data_3QSC # _entry.id 3QSC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QSC pdb_00003qsc 10.2210/pdb3qsc/pdb NDB NA0987 ? ? RCSB RCSB064041 ? ? WWPDB D_1000064041 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3CE5 'The same human telomeric G-quadruplex bound to an acridine ligand (Braco19)' unspecified PDB 3CCO 'The same human telomeric G-quadruplex bound to a nathphalene diimde ligand' unspecified PDB 3CDM 'The same human telomeric G-quadruplex bound to a nathphalene diimde ligand' unspecified PDB 1KF1 'The same human telomeric G-quadruplex in its native (ligand-free) form.' unspecified PDB 1K8P 'The same human telomeric G-quadruplex in its native (ligand-free) form.' unspecified PDB 2HRI 'The same human telomeric G-quadruplex bound to a porphyrin ligand' unspecified PDB 3qsf . unspecified # _pdbx_database_status.entry_id 3QSC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-02-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Campbell, N.H.' 1 'Abd Karim, N.H.' 2 'Parkinson, G.N.' 3 'Vilar, R.' 4 'Neidle, S.' 5 # _citation.id primary _citation.title 'Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 209 _citation.page_last 222 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22112241 _citation.pdbx_database_id_DOI 10.1021/jm201140v # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campbell, N.H.' 1 ? primary 'Karim, N.H.' 2 ? primary 'Parkinson, G.N.' 3 ? primary 'Gunaratnam, M.' 4 ? primary 'Petrucci, V.' 5 ? primary 'Todd, A.K.' 6 ? primary 'Vilar, R.' 7 ? primary 'Neidle, S.' 8 ? # _cell.length_a 43.753 _cell.length_b 54.786 _cell.length_c 33.430 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3QSC _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.entry_id 3QSC _symmetry.Int_Tables_number 21 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*AP*GP*GP*GP*TP*(BRU)P*AP*GP*GP*GP*TP*T)-3'" 3838.332 1 ? ? ? 'Human telomeric G-quadruplex DNA' 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn ;[2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappaO}(2-)]copper (II) ; 668.233 1 ? ? ? ? 4 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DA)(DG)(DG)(DG)(DT)(BRU)(DA)(DG)(DG)(DG)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AGGGTUAGGGTT _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 BRU n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in humans' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3QSC _struct_ref.pdbx_db_accession 3QSC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code AGGGTUAGGGTT _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3QSC _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3QSC _struct_ref_seq.db_align_beg 1001 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1012 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1001 _struct_ref_seq.pdbx_auth_seq_align_end 1012 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 CUF non-polymer . ;[2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappaO}(2-)]copper (II) ; 'N,N-Bis[4-[[1-(2-ethyl)piperidine]oxy]salicylidene]-4,5-difluoro-1,2-phenylenediamine-Copper (II)' 'C34 H38 Cu F2 N4 O4' 668.233 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.crystals_number 1 _exptl.entry_id 3QSC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;Initial conditions were 0.6 mM quadruplex DNA, 0.6 mM ligand, 0.4% PEG 2000 (w/v), 100mM potassium chloride, 100mM sodium chloride, 100mM lithium sulphate, 20mM potassium cacodylate, equilibrated against a reservoir well solution of 60% PEG 2000 (w/v), pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.90740 1.0 2 0.92060 1.0 3 0.92110 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.90740, 0.92060, 0.92110' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 # _reflns.entry_id 3QSC _reflns.d_resolution_high 2.254 _reflns.d_resolution_low 21.188 _reflns.number_all 2020 _reflns.number_obs 2020 _reflns.pdbx_netI_over_sigmaI 24.900 _reflns.pdbx_Rsym_value 0.034 _reflns.pdbx_redundancy 3.800 _reflns.percent_possible_obs 98.200 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.250 2.380 ? 701 ? 0.095 8.100 0.095 ? 2.600 ? 271 91.500 1 1 2.380 2.520 ? 1174 ? 0.062 11.800 0.062 ? 4.200 ? 282 99.900 2 1 2.520 2.690 ? 1080 ? 0.044 15.000 0.044 ? 4.300 ? 254 100.000 3 1 2.690 2.910 ? 1016 ? 0.039 16.200 0.039 ? 4.200 ? 243 100.000 4 1 2.910 3.190 ? 940 ? 0.031 16.200 0.031 ? 4.100 ? 227 100.000 5 1 3.190 3.560 ? 806 ? 0.032 14.300 0.032 ? 4.100 ? 199 98.800 6 1 3.560 4.120 ? 737 ? 0.028 19.800 0.028 ? 4.000 ? 185 99.800 7 1 4.120 5.040 ? 607 ? 0.036 15.800 0.036 ? 3.700 ? 162 99.600 8 1 5.040 7.130 ? 428 ? 0.030 17.300 0.030 ? 3.400 ? 127 98.800 9 1 7.130 21.876 ? 220 ? 0.031 18.500 0.031 ? 3.100 ? 70 90.200 10 1 # _refine.entry_id 3QSC _refine.ls_d_res_high 2.4000 _refine.ls_d_res_low 15.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.0600 _refine.ls_number_reflns_obs 1687 _refine.ls_number_reflns_all 1687 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2142 _refine.ls_R_factor_R_work 0.2132 _refine.ls_wR_factor_R_work 0.2426 _refine.ls_R_factor_R_free 0.2343 _refine.ls_wR_factor_R_free 0.2684 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 77 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.2997 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2500 _refine.aniso_B[2][2] 0.8400 _refine.aniso_B[3][3] -0.5800 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9390 _refine.correlation_coeff_Fo_to_Fc_free 0.9130 _refine.overall_SU_R_Cruickshank_DPI 0.4643 _refine.overall_SU_R_free 0.2498 _refine.pdbx_overall_ESU_R_Free 0.2500 _refine.overall_SU_ML 0.1810 _refine.overall_SU_B 8.6280 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1K8P _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7823 _refine.B_iso_max 67.480 _refine.B_iso_min 13.140 _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 231 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 306 _refine_hist.d_res_high 2.4000 _refine_hist.d_res_low 15.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 312 0.011 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 476 1.559 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 44 0.056 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 169 0.023 0.020 ? 'X-RAY DIFFRACTION' ? r_scbond_it 312 2.847 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 476 4.310 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.4000 _refine_ls_shell.d_res_low 2.4610 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 107 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3370 _refine_ls_shell.R_factor_R_free 0.2260 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 6 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 113 _refine_ls_shell.number_reflns_obs 107 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3QSC _struct.title 'The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a copper complex)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QSC _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Parallel, telomere, quadruplex, drug, DNA, metal complex, copper complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 5 "O3'" ? ? ? 1_555 A BRU 6 P ? ? X DT 1005 X BRU 1006 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale2 covale both ? A BRU 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? X BRU 1006 X DA 1007 1_555 ? ? ? ? ? ? ? 1.581 ? ? metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? X DG 1002 X K 2014 1_555 ? ? ? ? ? ? ? 2.872 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? X DG 1002 X K 2015 1_555 ? ? ? ? ? ? ? 2.633 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? X DG 1003 X K 2013 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? X DG 1003 X K 2014 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? X DG 1004 X K 2013 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 C K . K ? ? X DG 1008 X K 2014 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? X DG 1008 X K 2015 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? X DG 1009 X K 2013 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? X DG 1009 X K 2014 1_555 ? ? ? ? ? ? ? 3.043 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? X DG 1010 X K 2013 1_555 ? ? ? ? ? ? ? 2.705 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? X DG 1002 X DG 1008 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? X DG 1002 X DG 1008 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? X DG 1003 X DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? X DG 1003 X DG 1009 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? X DG 1004 X DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? X DG 1004 X DG 1010 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X K 2013 ? 10 'BINDING SITE FOR RESIDUE K X 2013' AC2 Software X K 2014 ? 14 'BINDING SITE FOR RESIDUE K X 2014' AC3 Software X K 2015 ? 12 'BINDING SITE FOR RESIDUE K X 2015' AC4 Software X CUF 3016 ? 7 'BINDING SITE FOR RESIDUE CUF X 3016' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 3 ? DG X 1003 . ? 1_555 ? 2 AC1 10 DG A 3 ? DG X 1003 . ? 2_665 ? 3 AC1 10 DG A 4 ? DG X 1004 . ? 1_555 ? 4 AC1 10 DG A 4 ? DG X 1004 . ? 2_665 ? 5 AC1 10 DG A 9 ? DG X 1009 . ? 1_555 ? 6 AC1 10 DG A 9 ? DG X 1009 . ? 2_665 ? 7 AC1 10 DG A 10 ? DG X 1010 . ? 2_665 ? 8 AC1 10 DG A 10 ? DG X 1010 . ? 1_555 ? 9 AC1 10 K C . ? K X 2014 . ? 2_665 ? 10 AC1 10 K C . ? K X 2014 . ? 1_555 ? 11 AC2 14 DG A 2 ? DG X 1002 . ? 1_555 ? 12 AC2 14 DG A 2 ? DG X 1002 . ? 2_665 ? 13 AC2 14 DG A 3 ? DG X 1003 . ? 2_665 ? 14 AC2 14 DG A 3 ? DG X 1003 . ? 1_555 ? 15 AC2 14 DG A 8 ? DG X 1008 . ? 1_555 ? 16 AC2 14 DG A 8 ? DG X 1008 . ? 2_665 ? 17 AC2 14 DG A 9 ? DG X 1009 . ? 1_555 ? 18 AC2 14 DG A 9 ? DG X 1009 . ? 2_665 ? 19 AC2 14 K B . ? K X 2013 . ? 2_665 ? 20 AC2 14 K B . ? K X 2013 . ? 1_555 ? 21 AC2 14 K D . ? K X 2015 . ? 2_665 ? 22 AC2 14 K D . ? K X 2015 . ? 3_656 ? 23 AC2 14 K D . ? K X 2015 . ? 4_566 ? 24 AC2 14 K D . ? K X 2015 . ? 1_555 ? 25 AC3 12 DG A 2 ? DG X 1002 . ? 1_555 ? 26 AC3 12 DG A 2 ? DG X 1002 . ? 2_665 ? 27 AC3 12 DG A 2 ? DG X 1002 . ? 3_656 ? 28 AC3 12 DG A 2 ? DG X 1002 . ? 4_566 ? 29 AC3 12 DG A 8 ? DG X 1008 . ? 3_656 ? 30 AC3 12 DG A 8 ? DG X 1008 . ? 4_566 ? 31 AC3 12 DG A 8 ? DG X 1008 . ? 1_555 ? 32 AC3 12 DG A 8 ? DG X 1008 . ? 2_665 ? 33 AC3 12 K C . ? K X 2014 . ? 3_656 ? 34 AC3 12 K C . ? K X 2014 . ? 2_665 ? 35 AC3 12 K C . ? K X 2014 . ? 4_566 ? 36 AC3 12 K C . ? K X 2014 . ? 1_555 ? 37 AC4 7 DG A 4 ? DG X 1004 . ? 1_555 ? 38 AC4 7 DG A 4 ? DG X 1004 . ? 2_665 ? 39 AC4 7 DG A 10 ? DG X 1010 . ? 2_665 ? 40 AC4 7 DG A 10 ? DG X 1010 . ? 1_555 ? 41 AC4 7 DT A 11 ? DT X 1011 . ? 1_555 ? 42 AC4 7 DT A 11 ? DT X 1011 . ? 4_565 ? 43 AC4 7 DT A 11 ? DT X 1011 . ? 2_665 ? # _atom_sites.entry_id 3QSC _atom_sites.fract_transf_matrix[1][1] 0.022856 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029913 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C CU F K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1001 1001 DA A X . n A 1 2 DG 2 1002 1002 DG G X . n A 1 3 DG 3 1003 1003 DG G X . n A 1 4 DG 4 1004 1004 DG G X . n A 1 5 DT 5 1005 1005 DT T X . n A 1 6 BRU 6 1006 1006 BRU BRU X . n A 1 7 DA 7 1007 1007 DA A X . n A 1 8 DG 8 1008 1008 DG G X . n A 1 9 DG 9 1009 1009 DG G X . n A 1 10 DG 10 1010 1010 DG G X . n A 1 11 DT 11 1011 1011 DT T X . n A 1 12 DT 12 1012 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 2013 2013 K K X . C 2 K 1 2014 2014 K K X . D 2 K 1 2015 2015 K K X . E 3 CUF 1 3016 3016 CUF CUF X . F 4 HOH 1 1 1 HOH HOH X . F 4 HOH 2 2 2 HOH HOH X . F 4 HOH 3 3 3 HOH HOH X . F 4 HOH 4 4 4 HOH HOH X . F 4 HOH 5 5 5 HOH HOH X . F 4 HOH 6 6 6 HOH HOH X . F 4 HOH 7 7 7 HOH HOH X . F 4 HOH 8 8 8 HOH HOH X . F 4 HOH 9 9 9 HOH HOH X . F 4 HOH 10 10 10 HOH HOH X . F 4 HOH 11 11 11 HOH HOH X . F 4 HOH 12 12 12 HOH HOH X . F 4 HOH 13 13 13 HOH HOH X . F 4 HOH 14 14 14 HOH HOH X . F 4 HOH 15 15 15 HOH HOH X . F 4 HOH 16 16 16 HOH HOH X . F 4 HOH 17 17 17 HOH HOH X . F 4 HOH 18 18 18 HOH HOH X . F 4 HOH 19 19 19 HOH HOH X . F 4 HOH 20 20 20 HOH HOH X . F 4 HOH 21 21 21 HOH HOH X . F 4 HOH 22 22 22 HOH HOH X . F 4 HOH 23 23 23 HOH HOH X . F 4 HOH 24 24 24 HOH HOH X . F 4 HOH 25 25 25 HOH HOH X . F 4 HOH 26 26 26 HOH HOH X . F 4 HOH 27 27 27 HOH HOH X . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id BRU _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id X _pdbx_struct_mod_residue.auth_comp_id BRU _pdbx_struct_mod_residue.auth_seq_id 1006 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2240 ? 1 MORE 3 ? 1 'SSA (A^2)' 4850 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 43.7530000000 0.0000000000 -1.0000000000 0.0000000000 54.7860000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 X K 2013 ? B K . 2 1 X K 2014 ? C K . 3 1 X K 2015 ? D K . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? X DG 1002 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 3 ? X DG 1003 ? 1_555 82.0 ? 2 O6 ? A DG 2 ? X DG 1002 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 8 ? X DG 1008 ? 1_555 70.3 ? 3 O6 ? A DG 3 ? X DG 1003 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 8 ? X DG 1008 ? 1_555 89.4 ? 4 O6 ? A DG 2 ? X DG 1002 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 9 ? X DG 1009 ? 1_555 139.0 ? 5 O6 ? A DG 3 ? X DG 1003 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 9 ? X DG 1009 ? 1_555 65.4 ? 6 O6 ? A DG 8 ? X DG 1008 ? 1_555 K ? C K . ? X K 2014 ? 1_555 O6 ? A DG 9 ? X DG 1009 ? 1_555 84.7 ? 7 O6 ? A DG 2 ? X DG 1002 ? 1_555 K ? D K . ? X K 2015 ? 1_555 O6 ? A DG 8 ? X DG 1008 ? 1_555 76.6 ? 8 O6 ? A DG 3 ? X DG 1003 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 4 ? X DG 1004 ? 1_555 67.8 ? 9 O6 ? A DG 3 ? X DG 1003 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 9 ? X DG 1009 ? 1_555 73.2 ? 10 O6 ? A DG 4 ? X DG 1004 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 9 ? X DG 1009 ? 1_555 89.7 ? 11 O6 ? A DG 3 ? X DG 1003 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 10 ? X DG 1010 ? 1_555 129.3 ? 12 O6 ? A DG 4 ? X DG 1004 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 10 ? X DG 1010 ? 1_555 78.6 ? 13 O6 ? A DG 9 ? X DG 1009 ? 1_555 K ? B K . ? X K 2013 ? 1_555 O6 ? A DG 10 ? X DG 1010 ? 1_555 69.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-07 2 'Structure model' 1 1 2012-04-18 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.352 _diffrn_reflns.pdbx_d_res_low 23.805 _diffrn_reflns.pdbx_number_obs 1774 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.101 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 3.40 _diffrn_reflns.pdbx_redundancy 3.60 _diffrn_reflns.pdbx_percent_possible_obs 99.30 _diffrn_reflns.number 6416 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.44 23.81 ? ? 0.030 0.030 ? 3.10 96.60 1 5.26 7.44 ? ? 0.051 0.051 ? 3.10 98.40 1 4.29 5.26 ? ? 0.061 0.061 ? 3.50 98.10 1 3.72 4.29 ? ? 0.074 0.074 ? 3.60 98.60 1 3.33 3.72 ? ? 0.107 0.107 ? 3.70 99.10 1 3.04 3.33 ? ? 0.177 0.177 ? 3.70 99.40 1 2.81 3.04 ? ? 0.214 0.214 ? 3.80 100.00 1 2.63 2.81 ? ? 0.273 0.273 ? 3.80 99.80 1 2.48 2.63 ? ? 0.356 0.356 ? 3.80 99.80 1 2.35 2.48 ? ? 0.418 0.418 ? 3.60 99.80 # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X DG 1004 ? ? "C1'" X DG 1004 ? ? N9 X DG 1004 ? ? 110.41 108.30 2.11 0.30 N 2 1 "O3'" X DT 1005 ? ? P X BRU 1006 ? ? OP1 X BRU 1006 ? ? 124.61 110.50 14.11 1.10 Y 3 1 "O4'" X DG 1008 ? ? "C1'" X DG 1008 ? ? N9 X DG 1008 ? ? 110.36 108.30 2.06 0.30 N 4 1 "O4'" X DG 1010 ? ? "C1'" X DG 1010 ? ? N9 X DG 1010 ? ? 110.52 108.30 2.22 0.30 N 5 1 "O4'" X DT 1011 ? ? "C1'" X DT 1011 ? ? N1 X DT 1011 ? ? 110.14 108.30 1.84 0.30 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id X _pdbx_unobs_or_zero_occ_residues.auth_comp_id DT _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1012 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id DT _pdbx_unobs_or_zero_occ_residues.label_seq_id 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 CUF C1 C Y N 34 CUF F1 F N N 35 CUF N1 N N N 36 CUF O1 O N N 37 CUF CU1 CU N N 38 CUF C2 C Y N 39 CUF F2 F N N 40 CUF N2 N N N 41 CUF O2 O N N 42 CUF C3 C Y N 43 CUF N3 N N N 44 CUF O3 O N N 45 CUF C4 C Y N 46 CUF N4 N N N 47 CUF O4 O N N 48 CUF C5 C Y N 49 CUF C6 C Y N 50 CUF C7 C N N 51 CUF C8 C Y N 52 CUF C9 C Y N 53 CUF C10 C Y N 54 CUF C11 C Y N 55 CUF C12 C Y N 56 CUF C13 C Y N 57 CUF C14 C N N 58 CUF C15 C Y N 59 CUF C16 C Y N 60 CUF C17 C Y N 61 CUF C18 C Y N 62 CUF C19 C Y N 63 CUF C20 C Y N 64 CUF C21 C N N 65 CUF C22 C N N 66 CUF C23 C N N 67 CUF C24 C N N 68 CUF C25 C N N 69 CUF C26 C N N 70 CUF C27 C N N 71 CUF C28 C N N 72 CUF C29 C N N 73 CUF C30 C N N 74 CUF C31 C N N 75 CUF C32 C N N 76 CUF C33 C N N 77 CUF C34 C N N 78 CUF H1 H N N 79 CUF H2 H N N 80 CUF H3 H N N 81 CUF H4 H N N 82 CUF H5 H N N 83 CUF H6 H N N 84 CUF H7 H N N 85 CUF H8 H N N 86 CUF H9 H N N 87 CUF H10 H N N 88 CUF H11 H N N 89 CUF H12 H N N 90 CUF H13 H N N 91 CUF H14 H N N 92 CUF H15 H N N 93 CUF H16 H N N 94 CUF H17 H N N 95 CUF H18 H N N 96 CUF H19 H N N 97 CUF H20 H N N 98 CUF H21 H N N 99 CUF H22 H N N 100 CUF H23 H N N 101 CUF H24 H N N 102 CUF H25 H N N 103 CUF H26 H N N 104 CUF H27 H N N 105 CUF H28 H N N 106 CUF H29 H N N 107 CUF H30 H N N 108 CUF H31 H N N 109 CUF H32 H N N 110 CUF H33 H N N 111 CUF H34 H N N 112 CUF H35 H N N 113 CUF H36 H N N 114 CUF H37 H N N 115 CUF H38 H N N 116 DA OP3 O N N 117 DA P P N N 118 DA OP1 O N N 119 DA OP2 O N N 120 DA "O5'" O N N 121 DA "C5'" C N N 122 DA "C4'" C N R 123 DA "O4'" O N N 124 DA "C3'" C N S 125 DA "O3'" O N N 126 DA "C2'" C N N 127 DA "C1'" C N R 128 DA N9 N Y N 129 DA C8 C Y N 130 DA N7 N Y N 131 DA C5 C Y N 132 DA C6 C Y N 133 DA N6 N N N 134 DA N1 N Y N 135 DA C2 C Y N 136 DA N3 N Y N 137 DA C4 C Y N 138 DA HOP3 H N N 139 DA HOP2 H N N 140 DA "H5'" H N N 141 DA "H5''" H N N 142 DA "H4'" H N N 143 DA "H3'" H N N 144 DA "HO3'" H N N 145 DA "H2'" H N N 146 DA "H2''" H N N 147 DA "H1'" H N N 148 DA H8 H N N 149 DA H61 H N N 150 DA H62 H N N 151 DA H2 H N N 152 DG OP3 O N N 153 DG P P N N 154 DG OP1 O N N 155 DG OP2 O N N 156 DG "O5'" O N N 157 DG "C5'" C N N 158 DG "C4'" C N R 159 DG "O4'" O N N 160 DG "C3'" C N S 161 DG "O3'" O N N 162 DG "C2'" C N N 163 DG "C1'" C N R 164 DG N9 N Y N 165 DG C8 C Y N 166 DG N7 N Y N 167 DG C5 C Y N 168 DG C6 C N N 169 DG O6 O N N 170 DG N1 N N N 171 DG C2 C N N 172 DG N2 N N N 173 DG N3 N N N 174 DG C4 C Y N 175 DG HOP3 H N N 176 DG HOP2 H N N 177 DG "H5'" H N N 178 DG "H5''" H N N 179 DG "H4'" H N N 180 DG "H3'" H N N 181 DG "HO3'" H N N 182 DG "H2'" H N N 183 DG "H2''" H N N 184 DG "H1'" H N N 185 DG H8 H N N 186 DG H1 H N N 187 DG H21 H N N 188 DG H22 H N N 189 DT OP3 O N N 190 DT P P N N 191 DT OP1 O N N 192 DT OP2 O N N 193 DT "O5'" O N N 194 DT "C5'" C N N 195 DT "C4'" C N R 196 DT "O4'" O N N 197 DT "C3'" C N S 198 DT "O3'" O N N 199 DT "C2'" C N N 200 DT "C1'" C N R 201 DT N1 N N N 202 DT C2 C N N 203 DT O2 O N N 204 DT N3 N N N 205 DT C4 C N N 206 DT O4 O N N 207 DT C5 C N N 208 DT C7 C N N 209 DT C6 C N N 210 DT HOP3 H N N 211 DT HOP2 H N N 212 DT "H5'" H N N 213 DT "H5''" H N N 214 DT "H4'" H N N 215 DT "H3'" H N N 216 DT "HO3'" H N N 217 DT "H2'" H N N 218 DT "H2''" H N N 219 DT "H1'" H N N 220 DT H3 H N N 221 DT H71 H N N 222 DT H72 H N N 223 DT H73 H N N 224 DT H6 H N N 225 HOH O O N N 226 HOH H1 H N N 227 HOH H2 H N N 228 K K K N N 229 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 CUF C1 O1 sing N N 35 CUF C1 C2 doub Y N 36 CUF C1 C6 sing Y N 37 CUF F1 C11 sing N N 38 CUF N1 C7 doub N N 39 CUF N1 C8 sing N N 40 CUF C2 C3 sing Y N 41 CUF C2 H1 sing N N 42 CUF F2 C10 sing N N 43 CUF N2 C13 sing N N 44 CUF N2 C14 doub N N 45 CUF O2 C20 sing N N 46 CUF C3 O3 sing N N 47 CUF C3 C4 doub Y N 48 CUF N3 C22 sing N N 49 CUF N3 C23 sing N N 50 CUF N3 C27 sing N N 51 CUF O3 C21 sing N N 52 CUF C4 C5 sing Y N 53 CUF C4 H2 sing N N 54 CUF N4 C29 sing N N 55 CUF N4 C30 sing N N 56 CUF N4 C34 sing N N 57 CUF O4 C18 sing N N 58 CUF O4 C28 sing N N 59 CUF C5 C6 doub Y N 60 CUF C5 H3 sing N N 61 CUF C6 C7 sing N N 62 CUF C7 H4 sing N N 63 CUF C8 C9 doub Y N 64 CUF C8 C13 sing Y N 65 CUF C9 C10 sing Y N 66 CUF C9 H5 sing N N 67 CUF C10 C11 doub Y N 68 CUF C11 C12 sing Y N 69 CUF C12 C13 doub Y N 70 CUF C12 H6 sing N N 71 CUF C14 C15 sing N N 72 CUF C14 H7 sing N N 73 CUF C15 C16 doub Y N 74 CUF C15 C20 sing Y N 75 CUF C16 C17 sing Y N 76 CUF C16 H8 sing N N 77 CUF C17 C18 doub Y N 78 CUF C17 H9 sing N N 79 CUF C18 C19 sing Y N 80 CUF C19 C20 doub Y N 81 CUF C19 H10 sing N N 82 CUF C21 C22 sing N N 83 CUF C21 H11 sing N N 84 CUF C21 H12 sing N N 85 CUF C22 H13 sing N N 86 CUF C22 H14 sing N N 87 CUF C23 C24 sing N N 88 CUF C23 H15 sing N N 89 CUF C23 H16 sing N N 90 CUF C24 C25 sing N N 91 CUF C24 H17 sing N N 92 CUF C24 H18 sing N N 93 CUF C25 C26 sing N N 94 CUF C25 H19 sing N N 95 CUF C25 H20 sing N N 96 CUF C26 C27 sing N N 97 CUF C26 H21 sing N N 98 CUF C26 H22 sing N N 99 CUF C27 H23 sing N N 100 CUF C27 H24 sing N N 101 CUF C28 C29 sing N N 102 CUF C28 H25 sing N N 103 CUF C28 H26 sing N N 104 CUF C29 H27 sing N N 105 CUF C29 H28 sing N N 106 CUF C30 C31 sing N N 107 CUF C30 H29 sing N N 108 CUF C30 H30 sing N N 109 CUF C31 C32 sing N N 110 CUF C31 H31 sing N N 111 CUF C31 H32 sing N N 112 CUF C32 C33 sing N N 113 CUF C32 H33 sing N N 114 CUF C32 H34 sing N N 115 CUF C33 C34 sing N N 116 CUF C33 H35 sing N N 117 CUF C33 H36 sing N N 118 CUF C34 H37 sing N N 119 CUF C34 H38 sing N N 120 CUF O2 CU1 sing N N 121 CUF O1 CU1 sing N N 122 CUF N1 CU1 sing N N 123 CUF N2 CU1 sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DG OP3 P sing N N 163 DG OP3 HOP3 sing N N 164 DG P OP1 doub N N 165 DG P OP2 sing N N 166 DG P "O5'" sing N N 167 DG OP2 HOP2 sing N N 168 DG "O5'" "C5'" sing N N 169 DG "C5'" "C4'" sing N N 170 DG "C5'" "H5'" sing N N 171 DG "C5'" "H5''" sing N N 172 DG "C4'" "O4'" sing N N 173 DG "C4'" "C3'" sing N N 174 DG "C4'" "H4'" sing N N 175 DG "O4'" "C1'" sing N N 176 DG "C3'" "O3'" sing N N 177 DG "C3'" "C2'" sing N N 178 DG "C3'" "H3'" sing N N 179 DG "O3'" "HO3'" sing N N 180 DG "C2'" "C1'" sing N N 181 DG "C2'" "H2'" sing N N 182 DG "C2'" "H2''" sing N N 183 DG "C1'" N9 sing N N 184 DG "C1'" "H1'" sing N N 185 DG N9 C8 sing Y N 186 DG N9 C4 sing Y N 187 DG C8 N7 doub Y N 188 DG C8 H8 sing N N 189 DG N7 C5 sing Y N 190 DG C5 C6 sing N N 191 DG C5 C4 doub Y N 192 DG C6 O6 doub N N 193 DG C6 N1 sing N N 194 DG N1 C2 sing N N 195 DG N1 H1 sing N N 196 DG C2 N2 sing N N 197 DG C2 N3 doub N N 198 DG N2 H21 sing N N 199 DG N2 H22 sing N N 200 DG N3 C4 sing N N 201 DT OP3 P sing N N 202 DT OP3 HOP3 sing N N 203 DT P OP1 doub N N 204 DT P OP2 sing N N 205 DT P "O5'" sing N N 206 DT OP2 HOP2 sing N N 207 DT "O5'" "C5'" sing N N 208 DT "C5'" "C4'" sing N N 209 DT "C5'" "H5'" sing N N 210 DT "C5'" "H5''" sing N N 211 DT "C4'" "O4'" sing N N 212 DT "C4'" "C3'" sing N N 213 DT "C4'" "H4'" sing N N 214 DT "O4'" "C1'" sing N N 215 DT "C3'" "O3'" sing N N 216 DT "C3'" "C2'" sing N N 217 DT "C3'" "H3'" sing N N 218 DT "O3'" "HO3'" sing N N 219 DT "C2'" "C1'" sing N N 220 DT "C2'" "H2'" sing N N 221 DT "C2'" "H2''" sing N N 222 DT "C1'" N1 sing N N 223 DT "C1'" "H1'" sing N N 224 DT N1 C2 sing N N 225 DT N1 C6 sing N N 226 DT C2 O2 doub N N 227 DT C2 N3 sing N N 228 DT N3 C4 sing N N 229 DT N3 H3 sing N N 230 DT C4 O4 doub N N 231 DT C4 C5 sing N N 232 DT C5 C7 sing N N 233 DT C5 C6 doub N N 234 DT C7 H71 sing N N 235 DT C7 H72 sing N N 236 DT C7 H73 sing N N 237 DT C6 H6 sing N N 238 HOH O H1 sing N N 239 HOH O H2 sing N N 240 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3QSC 'double helix' 3QSC 'parallel strands' 3QSC 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DG 8 1_555 1.683 3.337 0.106 -10.727 -7.835 -91.675 1 X_DG1002:DG1008_X X 1002 ? X 1008 ? 6 3 1 A DG 3 1_555 A DG 9 1_555 1.580 3.504 0.358 -13.710 11.153 -90.009 2 X_DG1003:DG1009_X X 1003 ? X 1009 ? 6 3 1 A DG 4 1_555 A DG 10 1_555 1.759 3.629 -0.317 4.514 -3.290 -87.550 3 X_DG1004:DG1010_X X 1004 ? X 1010 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DG 8 1_555 A DG 3 1_555 A DG 9 1_555 -0.770 -1.056 3.609 -1.664 -0.197 32.079 -1.870 1.060 3.649 -0.356 3.009 32.122 1 XX_DG1002DG1003:DG1009DG1008_XX X 1002 ? X 1008 ? X 1003 ? X 1009 ? 1 A DG 3 1_555 A DG 9 1_555 A DG 4 1_555 A DG 10 1_555 -0.565 -0.413 2.998 5.732 2.590 24.743 -1.594 2.738 2.743 5.922 -13.107 25.518 2 XX_DG1003DG1004:DG1010DG1009_XX X 1003 ? X 1009 ? X 1004 ? X 1010 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;[2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappaO}(2-)]copper (II) ; CUF 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1K8P _pdbx_initial_refinement_model.details ? #