HEADER DNA BINDING PROTEIN/LIGASE 25-FEB-11 3QVG TITLE XRCC1 BOUND TO DNA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE 3; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 924-1008; COMPND 5 SYNONYM: DNA LIGASE III, POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 3; COMPND 6 EC: 6.5.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA REPAIR PROTEIN XRCC1; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 531-631; COMPND 12 SYNONYM: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLA-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: XRCC-1, XRCC1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21-RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BRCT DOMAIN, DNA REPAIR, XRCC1, DNA LIGASE III-ALPHA, DNA BINDING KEYWDS 2 PROTEIN-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CUNEO,J.M.KRAHN,R.E.LONDON REVDAT 4 13-SEP-23 3QVG 1 SEQADV REVDAT 3 08-NOV-17 3QVG 1 REMARK REVDAT 2 02-NOV-11 3QVG 1 JRNL VERSN REVDAT 1 15-JUN-11 3QVG 0 JRNL AUTH M.J.CUNEO,S.A.GABEL,J.M.KRAHN,M.A.RICKER,R.E.LONDON JRNL TITL THE STRUCTURAL BASIS FOR PARTITIONING OF THE XRCC1/DNA JRNL TITL 2 LIGASE III-{ALPHA} BRCT-MEDIATED DIMER COMPLEXES. JRNL REF NUCLEIC ACIDS RES. V. 39 7816 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21652643 JRNL DOI 10.1093/NAR/GKR419 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 17331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0652 - 4.1050 0.99 3136 151 0.1591 0.2118 REMARK 3 2 4.1050 - 3.2591 0.92 2747 172 0.1967 0.2721 REMARK 3 3 3.2591 - 2.8474 0.98 2899 150 0.2104 0.2650 REMARK 3 4 2.8474 - 2.5871 0.97 2827 140 0.2074 0.2806 REMARK 3 5 2.5871 - 2.4018 0.96 2775 160 0.2341 0.3282 REMARK 3 6 2.4018 - 2.2602 0.71 2058 116 0.2960 0.3927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85990 REMARK 3 B22 (A**2) : 3.31360 REMARK 3 B33 (A**2) : -4.17360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3166 REMARK 3 ANGLE : 0.604 4337 REMARK 3 CHIRALITY : 0.045 451 REMARK 3 PLANARITY : 0.002 586 REMARK 3 DIHEDRAL : 10.712 1173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): -6.7672 8.9991 13.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.0365 REMARK 3 T33: 0.0833 T12: 0.0113 REMARK 3 T13: 0.0054 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.1489 L22: 3.4795 REMARK 3 L33: 3.0217 L12: 1.0256 REMARK 3 L13: 0.4049 L23: -0.4651 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.1536 S13: 0.0851 REMARK 3 S21: 0.1306 S22: 0.0252 S23: 0.1859 REMARK 3 S31: -0.0055 S32: -0.1018 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 528:536 AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): 9.3194 12.7220 12.8657 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.2136 REMARK 3 T33: 0.2318 T12: -0.0680 REMARK 3 T13: -0.0636 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.4660 L22: 0.4755 REMARK 3 L33: 0.1256 L12: -0.3370 REMARK 3 L13: -0.2295 L23: 0.1903 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.4716 S13: -0.1236 REMARK 3 S21: -0.5944 S22: 0.1678 S23: 0.6588 REMARK 3 S31: -0.1970 S32: 0.1418 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 537:631 AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): -9.4717 0.1714 -9.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.0573 REMARK 3 T33: 0.1355 T12: 0.0479 REMARK 3 T13: -0.0042 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.8183 L22: 1.3266 REMARK 3 L33: 4.2172 L12: 1.0810 REMARK 3 L13: 0.7109 L23: 0.6966 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: 0.0790 S13: -0.0482 REMARK 3 S21: 0.0462 S22: 0.0290 S23: 0.0875 REMARK 3 S31: 0.3229 S32: -0.0026 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): -8.6533 -7.8673 24.8252 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.1262 REMARK 3 T33: 0.1163 T12: 0.0031 REMARK 3 T13: -0.0078 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.3076 L22: 3.4863 REMARK 3 L33: 2.4785 L12: -0.0321 REMARK 3 L13: -0.6560 L23: -0.1195 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0160 S13: -0.2196 REMARK 3 S21: -0.0794 S22: -0.0699 S23: 0.1945 REMARK 3 S31: 0.1466 S32: -0.1183 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D AND RESID 528:536 AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): 9.0641 -7.7433 23.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.5845 REMARK 3 T33: 0.3681 T12: 0.2045 REMARK 3 T13: 0.0818 T23: 0.2310 REMARK 3 L TENSOR REMARK 3 L11: 0.8304 L22: 1.4162 REMARK 3 L33: 0.3358 L12: 0.8800 REMARK 3 L13: -0.1471 L23: -0.4633 REMARK 3 S TENSOR REMARK 3 S11: -0.3453 S12: 0.2269 S13: 0.4341 REMARK 3 S21: -1.3558 S22: 0.9070 S23: 0.0805 REMARK 3 S31: -0.0611 S32: 0.1113 S33: -0.0064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN D AND RESID 537:631 AND NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): -10.7896 -0.5017 48.5841 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1108 REMARK 3 T33: 0.1293 T12: -0.0135 REMARK 3 T13: -0.0092 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.6961 L22: 0.8508 REMARK 3 L33: 5.9361 L12: -0.4334 REMARK 3 L13: -1.2535 L23: 0.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0635 S13: -0.0198 REMARK 3 S21: 0.0191 S22: 0.0338 S23: 0.1303 REMARK 3 S31: -0.1853 S32: -0.3321 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3QVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000064153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3PC7, 3PC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG4000, 0.1 M TRIS, 0.2 M REMARK 280 NAACETATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 834 REMARK 465 ASN A 835 REMARK 465 SER A 836 REMARK 465 ALA A 837 REMARK 465 ASP A 838 REMARK 465 GLU A 839 REMARK 465 THR A 840 REMARK 465 MET B 526 REMARK 465 GLN B 527 REMARK 465 SER C 834 REMARK 465 ASN C 835 REMARK 465 SER C 836 REMARK 465 ALA C 837 REMARK 465 ASP C 838 REMARK 465 GLU C 839 REMARK 465 THR C 840 REMARK 465 LEU C 841 REMARK 465 CYS C 842 REMARK 465 GLN C 843 REMARK 465 THR C 844 REMARK 465 LYS C 845 REMARK 465 MET D 526 REMARK 465 GLN D 527 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 841 CG CD1 CD2 REMARK 470 GLN A 843 CG CD OE1 NE2 REMARK 470 THR A 844 OG1 CG2 REMARK 470 SER A 894 OG REMARK 470 ARG A 895 CD NE CZ NH1 NH2 REMARK 470 GLU B 528 CG CD OE1 OE2 REMARK 470 GLU B 587 CD OE1 OE2 REMARK 470 GLU B 594 CG CD OE1 OE2 REMARK 470 GLU B 598 CG CD OE1 OE2 REMARK 470 LYS B 616 CD CE NZ REMARK 470 GLN C 881 CG CD OE1 NE2 REMARK 470 ARG C 895 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 536 CG CD OE1 OE2 REMARK 470 GLU D 551 CG CD OE1 OE2 REMARK 470 ARG D 574 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 577 CD OE1 OE2 REMARK 470 MET D 597 CG SD CE REMARK 470 ARG D 608 CD NE CZ NH1 NH2 REMARK 470 GLU D 615 CD OE1 OE2 REMARK 470 LYS D 616 CG CD CE NZ REMARK 470 LYS D 618 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 875 35.04 -99.65 REMARK 500 SER A 894 95.12 -173.46 REMARK 500 ASN A 898 87.53 -156.94 REMARK 500 GLU B 542 54.05 39.35 REMARK 500 ASP C 876 17.98 80.04 REMARK 500 ASN D 576 -170.97 -68.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PC7 RELATED DB: PDB REMARK 900 LIGASE III ALPHA HOMODIMER REMARK 900 RELATED ID: 3PC6 RELATED DB: PDB REMARK 900 XRCC1 BRCT HOMODIMER REMARK 900 RELATED ID: 3PC8 RELATED DB: PDB REMARK 900 XRCC1 BRCT/LIGSAE III ALPHA HETERODIMER DBREF 3QVG A 837 921 UNP P49916 DNLI3_HUMAN 924 1008 DBREF 3QVG B 531 631 UNP Q60596 XRCC1_MOUSE 531 631 DBREF 3QVG C 837 921 UNP P49916 DNLI3_HUMAN 924 1008 DBREF 3QVG D 531 631 UNP Q60596 XRCC1_MOUSE 531 631 SEQADV 3QVG SER A 834 UNP P49916 EXPRESSION TAG SEQADV 3QVG ASN A 835 UNP P49916 EXPRESSION TAG SEQADV 3QVG SER A 836 UNP P49916 EXPRESSION TAG SEQADV 3QVG SER A 922 UNP P49916 EXPRESSION TAG SEQADV 3QVG MET B 526 UNP Q60596 EXPRESSION TAG SEQADV 3QVG GLN B 527 UNP Q60596 EXPRESSION TAG SEQADV 3QVG GLU B 528 UNP Q60596 EXPRESSION TAG SEQADV 3QVG PRO B 529 UNP Q60596 EXPRESSION TAG SEQADV 3QVG PRO B 530 UNP Q60596 EXPRESSION TAG SEQADV 3QVG VAL B 534 UNP Q60596 ILE 534 ENGINEERED MUTATION SEQADV 3QVG ARG B 574 UNP Q60596 TYR 574 ENGINEERED MUTATION SEQADV 3QVG SER C 834 UNP P49916 EXPRESSION TAG SEQADV 3QVG ASN C 835 UNP P49916 EXPRESSION TAG SEQADV 3QVG SER C 836 UNP P49916 EXPRESSION TAG SEQADV 3QVG SER C 922 UNP P49916 EXPRESSION TAG SEQADV 3QVG MET D 526 UNP Q60596 EXPRESSION TAG SEQADV 3QVG GLN D 527 UNP Q60596 EXPRESSION TAG SEQADV 3QVG GLU D 528 UNP Q60596 EXPRESSION TAG SEQADV 3QVG PRO D 529 UNP Q60596 EXPRESSION TAG SEQADV 3QVG PRO D 530 UNP Q60596 EXPRESSION TAG SEQADV 3QVG VAL D 534 UNP Q60596 ILE 534 ENGINEERED MUTATION SEQADV 3QVG ARG D 574 UNP Q60596 TYR 574 ENGINEERED MUTATION SEQRES 1 A 89 SER ASN SER ALA ASP GLU THR LEU CYS GLN THR LYS VAL SEQRES 2 A 89 LEU LEU ASP ILE PHE THR GLY VAL ARG LEU TYR LEU PRO SEQRES 3 A 89 PRO SER THR PRO ASP PHE SER ARG LEU ARG ARG TYR PHE SEQRES 4 A 89 VAL ALA PHE ASP GLY ASP LEU VAL GLN GLU PHE ASP MET SEQRES 5 A 89 THR SER ALA THR HIS VAL LEU GLY SER ARG ASP LYS ASN SEQRES 6 A 89 PRO ALA ALA GLN GLN VAL SER PRO GLU TRP ILE TRP ALA SEQRES 7 A 89 CYS ILE ARG LYS ARG ARG LEU VAL ALA PRO SER SEQRES 1 B 106 MET GLN GLU PRO PRO ASP LEU PRO VAL PRO GLU LEU PRO SEQRES 2 B 106 ASP PHE PHE GLU GLY LYS HIS PHE PHE LEU TYR GLY GLU SEQRES 3 B 106 PHE PRO GLY ASP GLU ARG ARG ARG LEU ILE ARG TYR VAL SEQRES 4 B 106 THR ALA PHE ASN GLY GLU LEU GLU ASP ARG MET ASN GLU SEQRES 5 B 106 ARG VAL GLN PHE VAL ILE THR ALA GLN GLU TRP ASP PRO SEQRES 6 B 106 ASN PHE GLU GLU ALA LEU MET GLU ASN PRO SER LEU ALA SEQRES 7 B 106 PHE VAL ARG PRO ARG TRP ILE TYR SER CYS ASN GLU LYS SEQRES 8 B 106 GLN LYS LEU LEU PRO HIS GLN LEU TYR GLY VAL VAL PRO SEQRES 9 B 106 GLN ALA SEQRES 1 C 89 SER ASN SER ALA ASP GLU THR LEU CYS GLN THR LYS VAL SEQRES 2 C 89 LEU LEU ASP ILE PHE THR GLY VAL ARG LEU TYR LEU PRO SEQRES 3 C 89 PRO SER THR PRO ASP PHE SER ARG LEU ARG ARG TYR PHE SEQRES 4 C 89 VAL ALA PHE ASP GLY ASP LEU VAL GLN GLU PHE ASP MET SEQRES 5 C 89 THR SER ALA THR HIS VAL LEU GLY SER ARG ASP LYS ASN SEQRES 6 C 89 PRO ALA ALA GLN GLN VAL SER PRO GLU TRP ILE TRP ALA SEQRES 7 C 89 CYS ILE ARG LYS ARG ARG LEU VAL ALA PRO SER SEQRES 1 D 106 MET GLN GLU PRO PRO ASP LEU PRO VAL PRO GLU LEU PRO SEQRES 2 D 106 ASP PHE PHE GLU GLY LYS HIS PHE PHE LEU TYR GLY GLU SEQRES 3 D 106 PHE PRO GLY ASP GLU ARG ARG ARG LEU ILE ARG TYR VAL SEQRES 4 D 106 THR ALA PHE ASN GLY GLU LEU GLU ASP ARG MET ASN GLU SEQRES 5 D 106 ARG VAL GLN PHE VAL ILE THR ALA GLN GLU TRP ASP PRO SEQRES 6 D 106 ASN PHE GLU GLU ALA LEU MET GLU ASN PRO SER LEU ALA SEQRES 7 D 106 PHE VAL ARG PRO ARG TRP ILE TYR SER CYS ASN GLU LYS SEQRES 8 D 106 GLN LYS LEU LEU PRO HIS GLN LEU TYR GLY VAL VAL PRO SEQRES 9 D 106 GLN ALA FORMUL 5 HOH *297(H2 O) HELIX 1 1 ASP A 864 PHE A 875 1 12 HELIX 2 2 GLN A 881 ALA A 888 5 8 HELIX 3 3 SER A 905 ARG A 916 1 12 HELIX 4 4 ASP B 555 PHE B 567 1 13 HELIX 5 5 ASP B 589 MET B 597 1 9 HELIX 6 6 ARG B 606 GLN B 617 1 12 HELIX 7 7 PRO B 621 GLY B 626 5 6 HELIX 8 8 ASP C 864 PHE C 875 1 12 HELIX 9 9 GLN C 881 ALA C 888 5 8 HELIX 10 10 SER C 905 ARG C 916 1 12 HELIX 11 11 ASP D 555 PHE D 567 1 13 HELIX 12 12 ASP D 589 ASN D 599 1 11 HELIX 13 13 ARG D 606 LYS D 616 1 11 HELIX 14 14 PRO D 621 GLY D 626 5 6 SHEET 1 A 4 ASP A 878 LEU A 879 0 SHEET 2 A 4 ARG A 855 TYR A 857 1 N LEU A 856 O ASP A 878 SHEET 3 A 4 HIS A 890 LEU A 892 1 O HIS A 890 N TYR A 857 SHEET 4 A 4 GLN A 902 VAL A 904 1 O GLN A 902 N VAL A 891 SHEET 1 B 4 GLU B 570 LEU B 571 0 SHEET 2 B 4 HIS B 545 TYR B 549 1 N PHE B 546 O GLU B 570 SHEET 3 B 4 PHE B 581 THR B 584 1 O ILE B 583 N TYR B 549 SHEET 4 B 4 ALA B 603 VAL B 605 1 O ALA B 603 N VAL B 582 SHEET 1 C 4 ASP C 878 LEU C 879 0 SHEET 2 C 4 ARG C 855 TYR C 857 1 N LEU C 856 O ASP C 878 SHEET 3 C 4 HIS C 890 LEU C 892 1 O LEU C 892 N TYR C 857 SHEET 4 C 4 GLN C 902 VAL C 904 1 O VAL C 904 N VAL C 891 SHEET 1 D 4 GLU D 570 LEU D 571 0 SHEET 2 D 4 HIS D 545 TYR D 549 1 N PHE D 546 O GLU D 570 SHEET 3 D 4 PHE D 581 THR D 584 1 O ILE D 583 N TYR D 549 SHEET 4 D 4 ALA D 603 VAL D 605 1 O ALA D 603 N VAL D 582 CRYST1 38.140 61.470 163.670 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006110 0.00000