data_3QZ8 # _entry.id 3QZ8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3QZ8 pdb_00003qz8 10.2210/pdb3qz8/pdb NDB NA1013 ? ? RCSB RCSB064289 ? ? WWPDB D_1000064289 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3QZ7 _pdbx_database_related.details 'T-3 ternary complex of Dpo4' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3QZ8 _pdbx_database_status.recvd_initial_deposition_date 2011-03-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pata, J.D.' 1 'Wu, Y.' 2 'Wilson, R.C.' 3 # _citation.id primary _citation.title 'The y-family DNA polymerase dpo4 uses a template slippage mechanism to create single-base deletions.' _citation.journal_abbrev J.Bacteriol. _citation.journal_volume 193 _citation.page_first 2630 _citation.page_last 2636 _citation.year 2011 _citation.journal_id_ASTM JOBAAY _citation.country US _citation.journal_id_ISSN 0021-9193 _citation.journal_id_CSD 0767 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21421759 _citation.pdbx_database_id_DOI 10.1128/JB.00012-11 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, Y.' 1 ? primary 'Wilson, R.C.' 2 ? primary 'Pata, J.D.' 3 ? # _cell.entry_id 3QZ8 _cell.length_a 98.906 _cell.length_b 102.694 _cell.length_c 52.617 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3QZ8 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 41200.852 1 2.7.7.7 ? ? ? 2 polymer syn "5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*GP*G)-3'" 4016.623 1 ? ? ? 'Primer DNA strand' 3 polymer syn "5'-D(*TP*TP*AP*CP*GP*CP*CP*TP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3'" 5771.734 1 ? ? ? 'Template DNA strand' 4 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 5 non-polymer syn "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 467.157 1 ? ? ? ? 6 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dpo4, Y-family DNA polymerase, Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDTGGHHHHHH ; ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDTGGHHHHHH ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DA)(DC)(DT)(DG)(DA)(DT)(DC)(DA)(DG)(DG)' GGCACTGATCAGG P ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DA)(DC)(DG)(DC)(DC)(DT)(DT)(DG)(DA)(DT)(DC)(DA)(DG)(DT)(DG)(DC)(DC)' TTACGCCTTGATCAGTGCC T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 TYR n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 SER n 1 23 LEU n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 VAL n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 PHE n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 PHE n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 ILE n 1 62 VAL n 1 63 GLU n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 ILE n 1 68 LEU n 1 69 PRO n 1 70 ASN n 1 71 ALA n 1 72 VAL n 1 73 TYR n 1 74 LEU n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 GLU n 1 80 VAL n 1 81 TYR n 1 82 GLN n 1 83 GLN n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 TYR n 1 96 SER n 1 97 GLU n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 ILE n 1 112 SER n 1 113 ASP n 1 114 LYS n 1 115 VAL n 1 116 ARG n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 GLU n 1 121 ALA n 1 122 TYR n 1 123 ASN n 1 124 LEU n 1 125 GLY n 1 126 LEU n 1 127 GLU n 1 128 ILE n 1 129 LYS n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 LYS n 1 136 GLU n 1 137 LYS n 1 138 ILE n 1 139 THR n 1 140 VAL n 1 141 THR n 1 142 VAL n 1 143 GLY n 1 144 ILE n 1 145 SER n 1 146 LYS n 1 147 ASN n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ILE n 1 154 ALA n 1 155 ALA n 1 156 ASP n 1 157 MET n 1 158 ALA n 1 159 LYS n 1 160 PRO n 1 161 ASN n 1 162 GLY n 1 163 ILE n 1 164 LYS n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 ASP n 1 169 GLU n 1 170 GLU n 1 171 VAL n 1 172 LYS n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 ARG n 1 177 GLU n 1 178 LEU n 1 179 ASP n 1 180 ILE n 1 181 ALA n 1 182 ASP n 1 183 VAL n 1 184 PRO n 1 185 GLY n 1 186 ILE n 1 187 GLY n 1 188 ASN n 1 189 ILE n 1 190 THR n 1 191 ALA n 1 192 GLU n 1 193 LYS n 1 194 LEU n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 GLY n 1 199 ILE n 1 200 ASN n 1 201 LYS n 1 202 LEU n 1 203 VAL n 1 204 ASP n 1 205 THR n 1 206 LEU n 1 207 SER n 1 208 ILE n 1 209 GLU n 1 210 PHE n 1 211 ASP n 1 212 LYS n 1 213 LEU n 1 214 LYS n 1 215 GLY n 1 216 MET n 1 217 ILE n 1 218 GLY n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 LEU n 1 229 ALA n 1 230 ARG n 1 231 ASP n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLU n 1 236 PRO n 1 237 ILE n 1 238 ARG n 1 239 THR n 1 240 ARG n 1 241 VAL n 1 242 ARG n 1 243 LYS n 1 244 SER n 1 245 ILE n 1 246 GLY n 1 247 ARG n 1 248 ILE n 1 249 VAL n 1 250 THR n 1 251 MET n 1 252 LYS n 1 253 ARG n 1 254 ASN n 1 255 SER n 1 256 ARG n 1 257 ASN n 1 258 LEU n 1 259 GLU n 1 260 GLU n 1 261 ILE n 1 262 LYS n 1 263 PRO n 1 264 TYR n 1 265 LEU n 1 266 PHE n 1 267 ARG n 1 268 ALA n 1 269 ILE n 1 270 GLU n 1 271 GLU n 1 272 SER n 1 273 TYR n 1 274 TYR n 1 275 LYS n 1 276 LEU n 1 277 ASP n 1 278 LYS n 1 279 ARG n 1 280 ILE n 1 281 PRO n 1 282 LYS n 1 283 ALA n 1 284 ILE n 1 285 HIS n 1 286 VAL n 1 287 VAL n 1 288 ALA n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 VAL n 1 297 SER n 1 298 ARG n 1 299 GLY n 1 300 ARG n 1 301 THR n 1 302 PHE n 1 303 PRO n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 LYS n 1 309 GLU n 1 310 THR n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLU n 1 315 SER n 1 316 VAL n 1 317 LYS n 1 318 LEU n 1 319 LEU n 1 320 GLN n 1 321 LYS n 1 322 ILE n 1 323 LEU n 1 324 GLU n 1 325 GLU n 1 326 ASP n 1 327 GLU n 1 328 ARG n 1 329 LYS n 1 330 ILE n 1 331 ARG n 1 332 ARG n 1 333 ILE n 1 334 GLY n 1 335 VAL n 1 336 ARG n 1 337 PHE n 1 338 SER n 1 339 LYS n 1 340 PHE n 1 341 ILE n 1 342 GLU n 1 343 ALA n 1 344 ILE n 1 345 GLY n 1 346 LEU n 1 347 ASP n 1 348 LYS n 1 349 PHE n 1 350 PHE n 1 351 ASP n 1 352 THR n 1 353 GLY n 1 354 GLY n 1 355 HIS n 1 356 HIS n 1 357 HIS n 1 358 HIS n 1 359 HIS n 1 360 HIS n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DG n 2 8 DA n 2 9 DT n 2 10 DC n 2 11 DA n 2 12 DG n 2 13 DG n 3 1 DT n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DG n 3 6 DC n 3 7 DC n 3 8 DT n 3 9 DT n 3 10 DG n 3 11 DA n 3 12 DT n 3 13 DC n 3 14 DA n 3 15 DG n 3 16 DT n 3 17 DG n 3 18 DC n 3 19 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, dpo4, SSO2448' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain P2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BLR(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKKT7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO42_SULSO Q97W02 1 ;MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ KILEEDERKIRRIGVRFSKFIEAIGLDKFFDT ; 1 ? 2 PDB 3QZ8 3QZ8 2 GGCACTGATCAGG ? ? 3 PDB 3QZ8 3QZ8 3 TTACGCCTTGATCAGTGCC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3QZ8 A 1 ? 352 ? Q97W02 1 ? 352 ? 1 352 2 2 3QZ8 P 1 ? 13 ? 3QZ8 1 ? 13 ? 1 13 3 3 3QZ8 T 1 ? 19 ? 3QZ8 1 ? 19 ? 1 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3QZ8 GLY A 353 ? UNP Q97W02 ? ? 'expression tag' 353 1 1 3QZ8 GLY A 354 ? UNP Q97W02 ? ? 'expression tag' 354 2 1 3QZ8 HIS A 355 ? UNP Q97W02 ? ? 'expression tag' 355 3 1 3QZ8 HIS A 356 ? UNP Q97W02 ? ? 'expression tag' 356 4 1 3QZ8 HIS A 357 ? UNP Q97W02 ? ? 'expression tag' 357 5 1 3QZ8 HIS A 358 ? UNP Q97W02 ? ? 'expression tag' 358 6 1 3QZ8 HIS A 359 ? UNP Q97W02 ? ? 'expression tag' 359 7 1 3QZ8 HIS A 360 ? UNP Q97W02 ? ? 'expression tag' 360 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCP non-polymer . "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O13 P3' 467.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3QZ8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_percent_sol 53.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.04 _exptl_crystal_grow.pdbx_details '12% PEG3350, 100 mM MES-Tris, 100 mM calcium acetate, 2.5% glycerol, pH 6.04, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 1.0809 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3QZ8 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.999 _reflns.number_obs 35093 _reflns.number_all 37073 _reflns.percent_possible_obs 94.7 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.percent_possible_all 58.2 _reflns_shell.Rmerge_I_obs 0.469 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1057 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3QZ8 _refine.ls_number_reflns_obs 33611 _refine.ls_number_reflns_all 33611 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.679 _refine.ls_d_res_high 1.999 _refine.ls_percent_reflns_obs 90.84 _refine.ls_R_factor_obs 0.2034 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2014 _refine.ls_R_factor_R_free 0.2420 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.97 _refine.ls_number_reflns_R_free 1670 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 8.6873 _refine.aniso_B[2][2] -3.7525 _refine.aniso_B[3][3] -4.9347 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.410 _refine.solvent_model_param_bsol 40.113 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.65 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1JX4' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ANISOTROPIC _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.24 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 25.72 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2743 _refine_hist.pdbx_number_atoms_nucleic_acid 572 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 3513 _refine_hist.d_res_high 1.999 _refine_hist.d_res_low 24.679 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 3461 'X-RAY DIFFRACTION' ? f_angle_d 1.577 ? ? 4782 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.763 ? ? 1373 'X-RAY DIFFRACTION' ? f_chiral_restr 0.190 ? ? 544 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 501 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.9993 2.0581 1532 0.2745 53.00 0.3983 . . 79 . . . . 'X-RAY DIFFRACTION' . 2.0581 2.1245 2123 0.2547 73.00 0.3087 . . 95 . . . . 'X-RAY DIFFRACTION' . 2.1245 2.2004 2502 0.2362 86.00 0.2399 . . 113 . . . . 'X-RAY DIFFRACTION' . 2.2004 2.2885 2647 0.2218 92.00 0.2781 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.2885 2.3925 2753 0.2213 95.00 0.2475 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.3925 2.5186 2769 0.2293 96.00 0.2710 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.5186 2.6762 2852 0.2285 98.00 0.2662 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.6762 2.8825 2820 0.2332 98.00 0.2837 . . 193 . . . . 'X-RAY DIFFRACTION' . 2.8825 3.1721 2903 0.2178 99.00 0.2837 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.1721 3.6298 2953 0.2058 100.00 0.2539 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.6298 4.5684 2986 0.1609 100.00 0.2144 . . 153 . . . . 'X-RAY DIFFRACTION' . 4.5684 24.6812 3101 0.1854 99.00 0.1893 . . 154 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3QZ8 _struct.title 'TT-4 ternary complex of Dpo4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3QZ8 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'lesion bypass, single-base deletion, -1 frameshift, REPLICATION-DNA complex, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? ASN A 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO A 21 ? LYS A 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN A 47 ? LYS A 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO A 60 ? LEU A 68 ? PRO A 60 LEU A 68 1 ? 9 HELX_P HELX_P5 5 ARG A 77 ? ARG A 93 ? ARG A 77 ARG A 93 1 ? 17 HELX_P HELX_P6 6 ASP A 117 ? LYS A 137 ? ASP A 117 LYS A 137 1 ? 21 HELX_P HELX_P7 7 ASN A 147 ? LYS A 159 ? ASN A 147 LYS A 159 1 ? 13 HELX_P HELX_P8 8 ASP A 167 ? LEU A 178 ? ASP A 167 LEU A 178 1 ? 12 HELX_P HELX_P9 9 ASP A 179 ? VAL A 183 ? ASP A 179 VAL A 183 5 ? 5 HELX_P HELX_P10 10 GLY A 187 ? LYS A 196 ? GLY A 187 LYS A 196 1 ? 10 HELX_P HELX_P11 11 VAL A 203 ? ILE A 208 ? VAL A 203 ILE A 208 1 ? 6 HELX_P HELX_P12 12 GLU A 209 ? GLY A 218 ? GLU A 209 GLY A 218 1 ? 10 HELX_P HELX_P13 13 GLY A 218 ? ARG A 230 ? GLY A 218 ARG A 230 1 ? 13 HELX_P HELX_P14 14 ASN A 257 ? ASP A 277 ? ASN A 257 ASP A 277 1 ? 21 HELX_P HELX_P15 15 SER A 307 ? ASP A 326 ? SER A 307 ASP A 326 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 7 A CA 361 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc2 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 7 A CA 362 1_555 ? ? ? ? ? ? ? 3.023 ? ? metalc3 metalc ? ? A PHE 8 O ? ? ? 1_555 D CA . CA ? ? A PHE 8 A CA 361 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc4 metalc ? ? A ASP 105 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 105 A CA 361 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc5 metalc ? ? A ASP 105 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 105 A CA 362 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc6 metalc ? ? A ALA 181 O ? ? ? 1_555 F CA . CA ? ? A ALA 181 A CA 363 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc7 metalc ? ? A ILE 186 O ? ? ? 1_555 F CA . CA ? ? A ILE 186 A CA 363 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 G DCP . O1B ? ? A CA 361 A DCP 364 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 G DCP . O2A ? ? A CA 361 A DCP 364 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 G DCP . O1G ? ? A CA 361 A DCP 364 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc11 metalc ? ? E CA . CA ? ? ? 1_555 G DCP . O2A ? ? A CA 362 A DCP 364 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 362 A HOH 432 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc13 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 363 A HOH 399 1_555 ? ? ? ? ? ? ? 2.576 ? ? metalc14 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 363 A HOH 456 1_555 ? ? ? ? ? ? ? 2.815 ? ? metalc15 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 363 A HOH 462 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc16 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 363 P HOH 133 1_555 ? ? ? ? ? ? ? 2.546 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 19 N3 ? ? P DG 1 T DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 19 O2 ? ? P DG 1 T DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 19 N4 ? ? P DG 1 T DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 18 N3 ? ? P DG 2 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 18 O2 ? ? P DG 2 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 18 N4 ? ? P DG 2 T DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 17 N1 ? ? P DC 3 T DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 17 O6 ? ? P DC 3 T DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 17 N2 ? ? P DC 3 T DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 16 N3 ? ? P DA 4 T DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 16 O4 ? ? P DA 4 T DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 15 N1 ? ? P DC 5 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 15 O6 ? ? P DC 5 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 15 N2 ? ? P DC 5 T DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 14 N1 ? ? P DT 6 T DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 14 N6 ? ? P DT 6 T DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 13 N3 ? ? P DG 7 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 13 O2 ? ? P DG 7 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 13 N4 ? ? P DG 7 T DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 12 N3 ? ? P DA 8 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 12 O4 ? ? P DA 8 T DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 11 N1 ? ? P DT 9 T DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 11 N6 ? ? P DT 9 T DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 10 N1 ? ? P DC 10 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 10 O6 ? ? P DC 10 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 10 N2 ? ? P DC 10 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 8 N3 ? ? P DA 11 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 8 O4 ? ? P DA 11 T DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 7 N3 ? ? P DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 7 O2 ? ? P DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 7 N4 ? ? P DG 12 T DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 6 N3 ? ? P DG 13 T DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 6 O2 ? ? P DG 13 T DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 6 N4 ? ? P DG 13 T DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 159 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 159 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 160 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 160 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 99 ? SER A 103 ? ILE A 99 SER A 103 A 2 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 A 3 VAL A 3 ? PHE A 8 ? VAL A 3 PHE A 8 A 4 VAL A 140 ? SER A 145 ? VAL A 140 SER A 145 A 5 ILE A 163 ? VAL A 165 ? ILE A 163 VAL A 165 B 1 GLY A 41 ? ALA A 46 ? GLY A 41 ALA A 46 B 2 VAL A 28 ? PHE A 33 ? VAL A 28 PHE A 33 B 3 VAL A 72 ? PRO A 75 ? VAL A 72 PRO A 75 C 1 SER A 244 ? SER A 255 ? SER A 244 SER A 255 C 2 ILE A 330 ? PHE A 340 ? ILE A 330 PHE A 340 C 3 PRO A 281 ? THR A 290 ? PRO A 281 THR A 290 C 4 ILE A 295 ? THR A 301 ? ILE A 295 THR A 301 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 100 ? N GLU A 100 O TYR A 108 ? O TYR A 108 A 2 3 O LEU A 109 ? O LEU A 109 N LEU A 4 ? N LEU A 4 A 3 4 N PHE A 5 ? N PHE A 5 O GLY A 143 ? O GLY A 143 A 4 5 N ILE A 144 ? N ILE A 144 O LYS A 164 ? O LYS A 164 B 1 2 O ALA A 44 ? O ALA A 44 N VAL A 30 ? N VAL A 30 B 2 3 N CYS A 31 ? N CYS A 31 O LEU A 74 ? O LEU A 74 C 1 2 N ILE A 245 ? N ILE A 245 O PHE A 337 ? O PHE A 337 C 2 3 O ARG A 331 ? O ARG A 331 N VAL A 289 ? N VAL A 289 C 3 4 N ALA A 288 ? N ALA A 288 O VAL A 296 ? O VAL A 296 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 361 ? 5 'BINDING SITE FOR RESIDUE CA A 361' AC2 Software A CA 362 ? 7 'BINDING SITE FOR RESIDUE CA A 362' AC3 Software A CA 363 ? 6 'BINDING SITE FOR RESIDUE CA A 363' AC4 Software A DCP 364 ? 18 'BINDING SITE FOR RESIDUE DCP A 364' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 7 ? ASP A 7 . ? 1_555 ? 2 AC1 5 PHE A 8 ? PHE A 8 . ? 1_555 ? 3 AC1 5 ASP A 105 ? ASP A 105 . ? 1_555 ? 4 AC1 5 CA E . ? CA A 362 . ? 1_555 ? 5 AC1 5 DCP G . ? DCP A 364 . ? 1_555 ? 6 AC2 7 ASP A 7 ? ASP A 7 . ? 1_555 ? 7 AC2 7 ASP A 105 ? ASP A 105 . ? 1_555 ? 8 AC2 7 GLU A 106 ? GLU A 106 . ? 1_555 ? 9 AC2 7 CA D . ? CA A 361 . ? 1_555 ? 10 AC2 7 DCP G . ? DCP A 364 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH A 432 . ? 1_555 ? 12 AC2 7 DG B 13 ? DG P 13 . ? 1_555 ? 13 AC3 6 ALA A 181 ? ALA A 181 . ? 1_555 ? 14 AC3 6 ILE A 186 ? ILE A 186 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 399 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 456 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 462 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH P 133 . ? 1_555 ? 19 AC4 18 ASP A 7 ? ASP A 7 . ? 1_555 ? 20 AC4 18 PHE A 8 ? PHE A 8 . ? 1_555 ? 21 AC4 18 ASP A 9 ? ASP A 9 . ? 1_555 ? 22 AC4 18 TYR A 10 ? TYR A 10 . ? 1_555 ? 23 AC4 18 PHE A 11 ? PHE A 11 . ? 1_555 ? 24 AC4 18 TYR A 12 ? TYR A 12 . ? 1_555 ? 25 AC4 18 ALA A 44 ? ALA A 44 . ? 1_555 ? 26 AC4 18 THR A 45 ? THR A 45 . ? 1_555 ? 27 AC4 18 TYR A 48 ? TYR A 48 . ? 1_555 ? 28 AC4 18 ARG A 51 ? ARG A 51 . ? 1_555 ? 29 AC4 18 ASP A 105 ? ASP A 105 . ? 1_555 ? 30 AC4 18 LYS A 159 ? LYS A 159 . ? 1_555 ? 31 AC4 18 CA D . ? CA A 361 . ? 1_555 ? 32 AC4 18 CA E . ? CA A 362 . ? 1_555 ? 33 AC4 18 HOH H . ? HOH A 378 . ? 1_555 ? 34 AC4 18 HOH H . ? HOH A 442 . ? 1_555 ? 35 AC4 18 DG B 13 ? DG P 13 . ? 1_555 ? 36 AC4 18 DG C 5 ? DG T 5 . ? 1_555 ? # _database_PDB_matrix.entry_id 3QZ8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3QZ8 _atom_sites.fract_transf_matrix[1][1] 0.010111 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009738 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019005 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASN 147 147 147 ASN ASN A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 LYS 193 193 193 LYS LYS A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 LYS 212 212 212 LYS LYS A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 MET 216 216 216 MET MET A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 ARG 240 240 240 ARG ARG A . n A 1 241 VAL 241 241 241 VAL VAL A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 ARG 247 247 247 ARG ARG A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 MET 251 251 251 MET MET A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ASN 254 254 254 ASN ASN A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 PRO 263 263 263 PRO PRO A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 ILE 269 269 269 ILE ILE A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 GLU 271 271 271 GLU GLU A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 LYS 278 278 278 LYS LYS A . n A 1 279 ARG 279 279 279 ARG ARG A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 THR 290 290 290 THR THR A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 VAL 296 296 296 VAL VAL A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 ARG 298 298 298 ARG ARG A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 THR 301 301 301 THR THR A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 HIS 304 304 304 HIS HIS A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 LYS 308 308 308 LYS LYS A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 THR 310 310 310 THR THR A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 VAL 316 316 316 VAL VAL A . n A 1 317 LYS 317 317 317 LYS LYS A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLN 320 320 320 GLN GLN A . n A 1 321 LYS 321 321 321 LYS LYS A . n A 1 322 ILE 322 322 322 ILE ILE A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 GLU 324 324 324 GLU GLU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 GLU 327 327 327 GLU GLU A . n A 1 328 ARG 328 328 328 ARG ARG A . n A 1 329 LYS 329 329 329 LYS LYS A . n A 1 330 ILE 330 330 330 ILE ILE A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 ARG 332 332 332 ARG ARG A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 VAL 335 335 335 VAL VAL A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 PHE 337 337 337 PHE PHE A . n A 1 338 SER 338 338 338 SER SER A . n A 1 339 LYS 339 339 339 LYS LYS A . n A 1 340 PHE 340 340 340 PHE PHE A . n A 1 341 ILE 341 341 341 ILE ILE A . n A 1 342 GLU 342 342 ? ? ? A . n A 1 343 ALA 343 343 ? ? ? A . n A 1 344 ILE 344 344 ? ? ? A . n A 1 345 GLY 345 345 ? ? ? A . n A 1 346 LEU 346 346 ? ? ? A . n A 1 347 ASP 347 347 ? ? ? A . n A 1 348 LYS 348 348 ? ? ? A . n A 1 349 PHE 349 349 ? ? ? A . n A 1 350 PHE 350 350 ? ? ? A . n A 1 351 ASP 351 351 ? ? ? A . n A 1 352 THR 352 352 ? ? ? A . n A 1 353 GLY 353 353 ? ? ? A . n A 1 354 GLY 354 354 ? ? ? A . n A 1 355 HIS 355 355 ? ? ? A . n A 1 356 HIS 356 356 ? ? ? A . n A 1 357 HIS 357 357 ? ? ? A . n A 1 358 HIS 358 358 ? ? ? A . n A 1 359 HIS 359 359 ? ? ? A . n A 1 360 HIS 360 360 ? ? ? A . n B 2 1 DG 1 1 1 DG DG P . n B 2 2 DG 2 2 2 DG DG P . n B 2 3 DC 3 3 3 DC DC P . n B 2 4 DA 4 4 4 DA DA P . n B 2 5 DC 5 5 5 DC DC P . n B 2 6 DT 6 6 6 DT DT P . n B 2 7 DG 7 7 7 DG DG P . n B 2 8 DA 8 8 8 DA DA P . n B 2 9 DT 9 9 9 DT DT P . n B 2 10 DC 10 10 10 DC DC P . n B 2 11 DA 11 11 11 DA DA P . n B 2 12 DG 12 12 12 DG DG P . n B 2 13 DG 13 13 13 DG DG P . n C 3 1 DT 1 1 ? ? ? T . n C 3 2 DT 2 2 ? ? ? T . n C 3 3 DA 3 3 ? ? ? T . n C 3 4 DC 4 4 ? ? ? T . n C 3 5 DG 5 5 5 DG DG T . n C 3 6 DC 6 6 6 DC DC T . n C 3 7 DC 7 7 7 DC DC T . n C 3 8 DT 8 8 8 DT DT T . n C 3 9 DT 9 9 9 DT DT T . n C 3 10 DG 10 10 10 DG DG T . n C 3 11 DA 11 11 11 DA DA T . n C 3 12 DT 12 12 12 DT DT T . n C 3 13 DC 13 13 13 DC DC T . n C 3 14 DA 14 14 14 DA DA T . n C 3 15 DG 15 15 15 DG DG T . n C 3 16 DT 16 16 16 DT DT T . n C 3 17 DG 17 17 17 DG DG T . n C 3 18 DC 18 18 18 DC DC T . n C 3 19 DC 19 19 19 DC DC T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 361 1 CA CA A . E 4 CA 1 362 2 CA CA A . F 4 CA 1 363 3 CA CA A . G 5 DCP 1 364 1 DCP DCP A . H 6 HOH 1 365 1 HOH HOH A . H 6 HOH 2 366 2 HOH HOH A . H 6 HOH 3 367 3 HOH HOH A . H 6 HOH 4 368 4 HOH HOH A . H 6 HOH 5 369 5 HOH HOH A . H 6 HOH 6 370 6 HOH HOH A . H 6 HOH 7 371 10 HOH HOH A . H 6 HOH 8 372 11 HOH HOH A . H 6 HOH 9 373 12 HOH HOH A . H 6 HOH 10 374 13 HOH HOH A . H 6 HOH 11 375 14 HOH HOH A . H 6 HOH 12 376 15 HOH HOH A . H 6 HOH 13 377 16 HOH HOH A . H 6 HOH 14 378 17 HOH HOH A . H 6 HOH 15 379 18 HOH HOH A . H 6 HOH 16 380 20 HOH HOH A . H 6 HOH 17 381 21 HOH HOH A . H 6 HOH 18 382 22 HOH HOH A . H 6 HOH 19 383 23 HOH HOH A . H 6 HOH 20 384 24 HOH HOH A . H 6 HOH 21 385 26 HOH HOH A . H 6 HOH 22 386 28 HOH HOH A . H 6 HOH 23 387 29 HOH HOH A . H 6 HOH 24 388 30 HOH HOH A . H 6 HOH 25 389 31 HOH HOH A . H 6 HOH 26 390 32 HOH HOH A . H 6 HOH 27 391 34 HOH HOH A . H 6 HOH 28 392 35 HOH HOH A . H 6 HOH 29 393 36 HOH HOH A . H 6 HOH 30 394 37 HOH HOH A . H 6 HOH 31 395 38 HOH HOH A . H 6 HOH 32 396 39 HOH HOH A . H 6 HOH 33 397 40 HOH HOH A . H 6 HOH 34 398 41 HOH HOH A . H 6 HOH 35 399 42 HOH HOH A . H 6 HOH 36 400 45 HOH HOH A . H 6 HOH 37 401 47 HOH HOH A . H 6 HOH 38 402 49 HOH HOH A . H 6 HOH 39 403 50 HOH HOH A . H 6 HOH 40 404 51 HOH HOH A . H 6 HOH 41 405 52 HOH HOH A . H 6 HOH 42 406 53 HOH HOH A . H 6 HOH 43 407 54 HOH HOH A . H 6 HOH 44 408 56 HOH HOH A . H 6 HOH 45 409 57 HOH HOH A . H 6 HOH 46 410 58 HOH HOH A . H 6 HOH 47 411 59 HOH HOH A . H 6 HOH 48 412 60 HOH HOH A . H 6 HOH 49 413 61 HOH HOH A . H 6 HOH 50 414 62 HOH HOH A . H 6 HOH 51 415 63 HOH HOH A . H 6 HOH 52 416 64 HOH HOH A . H 6 HOH 53 417 67 HOH HOH A . H 6 HOH 54 418 68 HOH HOH A . H 6 HOH 55 419 70 HOH HOH A . H 6 HOH 56 420 71 HOH HOH A . H 6 HOH 57 421 73 HOH HOH A . H 6 HOH 58 422 75 HOH HOH A . H 6 HOH 59 423 76 HOH HOH A . H 6 HOH 60 424 77 HOH HOH A . H 6 HOH 61 425 79 HOH HOH A . H 6 HOH 62 426 80 HOH HOH A . H 6 HOH 63 427 82 HOH HOH A . H 6 HOH 64 428 84 HOH HOH A . H 6 HOH 65 429 88 HOH HOH A . H 6 HOH 66 430 89 HOH HOH A . H 6 HOH 67 431 91 HOH HOH A . H 6 HOH 68 432 92 HOH HOH A . H 6 HOH 69 433 93 HOH HOH A . H 6 HOH 70 434 94 HOH HOH A . H 6 HOH 71 435 95 HOH HOH A . H 6 HOH 72 436 97 HOH HOH A . H 6 HOH 73 437 98 HOH HOH A . H 6 HOH 74 438 99 HOH HOH A . H 6 HOH 75 439 101 HOH HOH A . H 6 HOH 76 440 102 HOH HOH A . H 6 HOH 77 441 104 HOH HOH A . H 6 HOH 78 442 105 HOH HOH A . H 6 HOH 79 443 106 HOH HOH A . H 6 HOH 80 444 107 HOH HOH A . H 6 HOH 81 445 108 HOH HOH A . H 6 HOH 82 446 109 HOH HOH A . H 6 HOH 83 447 110 HOH HOH A . H 6 HOH 84 448 112 HOH HOH A . H 6 HOH 85 449 113 HOH HOH A . H 6 HOH 86 450 114 HOH HOH A . H 6 HOH 87 451 115 HOH HOH A . H 6 HOH 88 452 116 HOH HOH A . H 6 HOH 89 453 117 HOH HOH A . H 6 HOH 90 454 118 HOH HOH A . H 6 HOH 91 455 119 HOH HOH A . H 6 HOH 92 456 120 HOH HOH A . H 6 HOH 93 457 121 HOH HOH A . H 6 HOH 94 458 122 HOH HOH A . H 6 HOH 95 459 123 HOH HOH A . H 6 HOH 96 460 125 HOH HOH A . H 6 HOH 97 461 126 HOH HOH A . H 6 HOH 98 462 127 HOH HOH A . H 6 HOH 99 463 128 HOH HOH A . H 6 HOH 100 464 129 HOH HOH A . H 6 HOH 101 465 130 HOH HOH A . H 6 HOH 102 466 132 HOH HOH A . H 6 HOH 103 467 134 HOH HOH A . H 6 HOH 104 468 135 HOH HOH A . H 6 HOH 105 469 137 HOH HOH A . H 6 HOH 106 470 139 HOH HOH A . H 6 HOH 107 471 140 HOH HOH A . H 6 HOH 108 472 143 HOH HOH A . H 6 HOH 109 473 144 HOH HOH A . H 6 HOH 110 474 146 HOH HOH A . H 6 HOH 111 475 148 HOH HOH A . H 6 HOH 112 476 149 HOH HOH A . H 6 HOH 113 477 150 HOH HOH A . H 6 HOH 114 478 153 HOH HOH A . H 6 HOH 115 479 155 HOH HOH A . H 6 HOH 116 480 157 HOH HOH A . H 6 HOH 117 481 158 HOH HOH A . H 6 HOH 118 482 159 HOH HOH A . H 6 HOH 119 483 160 HOH HOH A . H 6 HOH 120 484 161 HOH HOH A . H 6 HOH 121 485 163 HOH HOH A . H 6 HOH 122 486 164 HOH HOH A . H 6 HOH 123 487 165 HOH HOH A . H 6 HOH 124 488 166 HOH HOH A . I 6 HOH 1 25 25 HOH HOH P . I 6 HOH 2 27 27 HOH HOH P . I 6 HOH 3 43 43 HOH HOH P . I 6 HOH 4 44 44 HOH HOH P . I 6 HOH 5 55 55 HOH HOH P . I 6 HOH 6 66 66 HOH HOH P . I 6 HOH 7 72 72 HOH HOH P . I 6 HOH 8 74 74 HOH HOH P . I 6 HOH 9 78 78 HOH HOH P . I 6 HOH 10 81 81 HOH HOH P . I 6 HOH 11 83 83 HOH HOH P . I 6 HOH 12 96 96 HOH HOH P . I 6 HOH 13 100 100 HOH HOH P . I 6 HOH 14 124 124 HOH HOH P . I 6 HOH 15 133 133 HOH HOH P . I 6 HOH 16 142 142 HOH HOH P . I 6 HOH 17 145 145 HOH HOH P . I 6 HOH 18 156 156 HOH HOH P . I 6 HOH 19 162 162 HOH HOH P . I 6 HOH 20 167 167 HOH HOH P . J 6 HOH 1 20 7 HOH HOH T . J 6 HOH 2 21 8 HOH HOH T . J 6 HOH 3 22 9 HOH HOH T . J 6 HOH 4 23 19 HOH HOH T . J 6 HOH 5 33 33 HOH HOH T . J 6 HOH 6 46 46 HOH HOH T . J 6 HOH 7 48 48 HOH HOH T . J 6 HOH 8 65 65 HOH HOH T . J 6 HOH 9 69 69 HOH HOH T . J 6 HOH 10 85 85 HOH HOH T . J 6 HOH 11 86 86 HOH HOH T . J 6 HOH 12 87 87 HOH HOH T . J 6 HOH 13 90 90 HOH HOH T . J 6 HOH 14 103 103 HOH HOH T . J 6 HOH 15 111 111 HOH HOH T . J 6 HOH 16 131 131 HOH HOH T . J 6 HOH 17 136 136 HOH HOH T . J 6 HOH 18 138 138 HOH HOH T . J 6 HOH 19 141 141 HOH HOH T . J 6 HOH 20 147 147 HOH HOH T . J 6 HOH 21 151 151 HOH HOH T . J 6 HOH 22 152 152 HOH HOH T . J 6 HOH 23 154 154 HOH HOH T . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5430 ? 1 MORE -66 ? 1 'SSA (A^2)' 19690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O ? A PHE 8 ? A PHE 8 ? 1_555 91.5 ? 2 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 86.9 ? 3 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 82.4 ? 4 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1B ? G DCP . ? A DCP 364 ? 1_555 174.1 ? 5 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1B ? G DCP . ? A DCP 364 ? 1_555 93.1 ? 6 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1B ? G DCP . ? A DCP 364 ? 1_555 90.1 ? 7 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 101.0 ? 8 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 161.1 ? 9 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 84.1 ? 10 O1B ? G DCP . ? A DCP 364 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 73.7 ? 11 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1G ? G DCP . ? A DCP 364 ? 1_555 103.6 ? 12 O ? A PHE 8 ? A PHE 8 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1G ? G DCP . ? A DCP 364 ? 1_555 107.6 ? 13 OD2 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1G ? G DCP . ? A DCP 364 ? 1_555 165.0 ? 14 O1B ? G DCP . ? A DCP 364 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1G ? G DCP . ? A DCP 364 ? 1_555 78.5 ? 15 O2A ? G DCP . ? A DCP 364 ? 1_555 CA ? D CA . ? A CA 361 ? 1_555 O1G ? G DCP . ? A DCP 364 ? 1_555 83.4 ? 16 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 93.5 ? 17 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 80.5 ? 18 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 O2A ? G DCP . ? A DCP 364 ? 1_555 95.2 ? 19 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 O ? H HOH . ? A HOH 432 ? 1_555 90.6 ? 20 OD1 ? A ASP 105 ? A ASP 105 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 O ? H HOH . ? A HOH 432 ? 1_555 163.6 ? 21 O2A ? G DCP . ? A DCP 364 ? 1_555 CA ? E CA . ? A CA 362 ? 1_555 O ? H HOH . ? A HOH 432 ? 1_555 101.2 ? 22 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? A ILE 186 ? A ILE 186 ? 1_555 92.8 ? 23 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 399 ? 1_555 85.5 ? 24 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 399 ? 1_555 71.7 ? 25 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 456 ? 1_555 94.7 ? 26 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 456 ? 1_555 138.0 ? 27 O ? H HOH . ? A HOH 399 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 456 ? 1_555 67.8 ? 28 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 462 ? 1_555 95.4 ? 29 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 462 ? 1_555 73.9 ? 30 O ? H HOH . ? A HOH 399 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 462 ? 1_555 145.7 ? 31 O ? H HOH . ? A HOH 456 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? H HOH . ? A HOH 462 ? 1_555 145.7 ? 32 O ? A ALA 181 ? A ALA 181 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? I HOH . ? P HOH 133 ? 1_555 175.8 ? 33 O ? A ILE 186 ? A ILE 186 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? I HOH . ? P HOH 133 ? 1_555 87.6 ? 34 O ? H HOH . ? A HOH 399 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? I HOH . ? P HOH 133 ? 1_555 90.7 ? 35 O ? H HOH . ? A HOH 456 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? I HOH . ? P HOH 133 ? 1_555 82.1 ? 36 O ? H HOH . ? A HOH 462 ? 1_555 CA ? F CA . ? A CA 363 ? 1_555 O ? I HOH . ? P HOH 133 ? 1_555 88.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_ref_seq_dif.details' 34 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 432 ? ? O A HOH 455 ? ? 1.85 2 1 O A HOH 482 ? ? O P HOH 162 ? ? 1.93 3 1 O T HOH 103 ? ? O T HOH 136 ? ? 1.94 4 1 O T HOH 131 ? ? O T HOH 136 ? ? 2.15 5 1 O A HOH 446 ? ? O A HOH 447 ? ? 2.17 6 1 O A HOH 473 ? ? O P HOH 156 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 481 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 P _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 72 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_546 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" P DG 1 ? ? "C1'" P DG 1 ? ? N9 P DG 1 ? ? 103.65 108.00 -4.35 0.70 N 2 1 "C1'" P DC 5 ? ? "O4'" P DC 5 ? ? "C4'" P DC 5 ? ? 103.74 110.10 -6.36 1.00 N 3 1 "O4'" P DT 9 ? ? "C1'" P DT 9 ? ? N1 P DT 9 ? ? 102.75 108.00 -5.25 0.70 N 4 1 "O4'" P DG 12 ? ? "C1'" P DG 12 ? ? N9 P DG 12 ? ? 112.78 108.30 4.48 0.30 N 5 1 "O4'" T DG 5 ? ? "C1'" T DG 5 ? ? N9 T DG 5 ? ? 103.79 108.00 -4.21 0.70 N 6 1 "O4'" T DT 9 ? ? "C1'" T DT 9 ? ? N1 T DT 9 ? ? 112.58 108.30 4.28 0.30 N 7 1 "O5'" T DG 10 ? ? "C5'" T DG 10 ? ? "C4'" T DG 10 ? ? 98.40 109.40 -11.00 0.80 N 8 1 "O4'" T DG 10 ? ? "C4'" T DG 10 ? ? "C3'" T DG 10 ? ? 109.78 106.00 3.78 0.60 N 9 1 "O4'" T DT 16 ? ? "C4'" T DT 16 ? ? "C3'" T DT 16 ? ? 101.02 104.50 -3.48 0.40 N 10 1 "O4'" T DT 16 ? ? "C1'" T DT 16 ? ? N1 T DT 16 ? ? 114.24 108.30 5.94 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 10 ? ? 25.75 55.14 2 1 ARG A 77 ? ? -119.97 74.88 3 1 SER A 96 ? ? -175.59 137.01 4 1 SER A 103 ? ? -174.11 -171.21 5 1 SER A 145 ? ? -166.26 -163.71 6 1 ASP A 277 ? ? 59.45 -108.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 342 ? A GLU 342 2 1 Y 1 A ALA 343 ? A ALA 343 3 1 Y 1 A ILE 344 ? A ILE 344 4 1 Y 1 A GLY 345 ? A GLY 345 5 1 Y 1 A LEU 346 ? A LEU 346 6 1 Y 1 A ASP 347 ? A ASP 347 7 1 Y 1 A LYS 348 ? A LYS 348 8 1 Y 1 A PHE 349 ? A PHE 349 9 1 Y 1 A PHE 350 ? A PHE 350 10 1 Y 1 A ASP 351 ? A ASP 351 11 1 Y 1 A THR 352 ? A THR 352 12 1 Y 1 A GLY 353 ? A GLY 353 13 1 Y 1 A GLY 354 ? A GLY 354 14 1 Y 1 A HIS 355 ? A HIS 355 15 1 Y 1 A HIS 356 ? A HIS 356 16 1 Y 1 A HIS 357 ? A HIS 357 17 1 Y 1 A HIS 358 ? A HIS 358 18 1 Y 1 A HIS 359 ? A HIS 359 19 1 Y 1 A HIS 360 ? A HIS 360 20 1 Y 1 T DT 1 ? C DT 1 21 1 Y 1 T DT 2 ? C DT 2 22 1 Y 1 T DA 3 ? C DA 3 23 1 Y 1 T DC 4 ? C DC 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DCP N1 N N N 159 DCP C2 C N N 160 DCP N3 N N N 161 DCP C4 C N N 162 DCP C5 C N N 163 DCP C6 C N N 164 DCP O2 O N N 165 DCP N4 N N N 166 DCP "C1'" C N R 167 DCP "C2'" C N N 168 DCP "C3'" C N S 169 DCP "C4'" C N R 170 DCP "O4'" O N N 171 DCP "O3'" O N N 172 DCP "C5'" C N N 173 DCP "O5'" O N N 174 DCP PA P N R 175 DCP O1A O N N 176 DCP O2A O N N 177 DCP O3A O N N 178 DCP PB P N S 179 DCP O1B O N N 180 DCP O2B O N N 181 DCP O3B O N N 182 DCP PG P N N 183 DCP O1G O N N 184 DCP O2G O N N 185 DCP O3G O N N 186 DCP H5 H N N 187 DCP H6 H N N 188 DCP HN41 H N N 189 DCP HN42 H N N 190 DCP "H1'" H N N 191 DCP "H2'1" H N N 192 DCP "H2'2" H N N 193 DCP "H3'" H N N 194 DCP "H4'" H N N 195 DCP "HO3'" H N N 196 DCP "H5'1" H N N 197 DCP "H5'2" H N N 198 DCP HOA2 H N N 199 DCP HOB2 H N N 200 DCP HOG2 H N N 201 DCP HOG3 H N N 202 DG OP3 O N N 203 DG P P N N 204 DG OP1 O N N 205 DG OP2 O N N 206 DG "O5'" O N N 207 DG "C5'" C N N 208 DG "C4'" C N R 209 DG "O4'" O N N 210 DG "C3'" C N S 211 DG "O3'" O N N 212 DG "C2'" C N N 213 DG "C1'" C N R 214 DG N9 N Y N 215 DG C8 C Y N 216 DG N7 N Y N 217 DG C5 C Y N 218 DG C6 C N N 219 DG O6 O N N 220 DG N1 N N N 221 DG C2 C N N 222 DG N2 N N N 223 DG N3 N N N 224 DG C4 C Y N 225 DG HOP3 H N N 226 DG HOP2 H N N 227 DG "H5'" H N N 228 DG "H5''" H N N 229 DG "H4'" H N N 230 DG "H3'" H N N 231 DG "HO3'" H N N 232 DG "H2'" H N N 233 DG "H2''" H N N 234 DG "H1'" H N N 235 DG H8 H N N 236 DG H1 H N N 237 DG H21 H N N 238 DG H22 H N N 239 DT OP3 O N N 240 DT P P N N 241 DT OP1 O N N 242 DT OP2 O N N 243 DT "O5'" O N N 244 DT "C5'" C N N 245 DT "C4'" C N R 246 DT "O4'" O N N 247 DT "C3'" C N S 248 DT "O3'" O N N 249 DT "C2'" C N N 250 DT "C1'" C N R 251 DT N1 N N N 252 DT C2 C N N 253 DT O2 O N N 254 DT N3 N N N 255 DT C4 C N N 256 DT O4 O N N 257 DT C5 C N N 258 DT C7 C N N 259 DT C6 C N N 260 DT HOP3 H N N 261 DT HOP2 H N N 262 DT "H5'" H N N 263 DT "H5''" H N N 264 DT "H4'" H N N 265 DT "H3'" H N N 266 DT "HO3'" H N N 267 DT "H2'" H N N 268 DT "H2''" H N N 269 DT "H1'" H N N 270 DT H3 H N N 271 DT H71 H N N 272 DT H72 H N N 273 DT H73 H N N 274 DT H6 H N N 275 GLN N N N N 276 GLN CA C N S 277 GLN C C N N 278 GLN O O N N 279 GLN CB C N N 280 GLN CG C N N 281 GLN CD C N N 282 GLN OE1 O N N 283 GLN NE2 N N N 284 GLN OXT O N N 285 GLN H H N N 286 GLN H2 H N N 287 GLN HA H N N 288 GLN HB2 H N N 289 GLN HB3 H N N 290 GLN HG2 H N N 291 GLN HG3 H N N 292 GLN HE21 H N N 293 GLN HE22 H N N 294 GLN HXT H N N 295 GLU N N N N 296 GLU CA C N S 297 GLU C C N N 298 GLU O O N N 299 GLU CB C N N 300 GLU CG C N N 301 GLU CD C N N 302 GLU OE1 O N N 303 GLU OE2 O N N 304 GLU OXT O N N 305 GLU H H N N 306 GLU H2 H N N 307 GLU HA H N N 308 GLU HB2 H N N 309 GLU HB3 H N N 310 GLU HG2 H N N 311 GLU HG3 H N N 312 GLU HE2 H N N 313 GLU HXT H N N 314 GLY N N N N 315 GLY CA C N N 316 GLY C C N N 317 GLY O O N N 318 GLY OXT O N N 319 GLY H H N N 320 GLY H2 H N N 321 GLY HA2 H N N 322 GLY HA3 H N N 323 GLY HXT H N N 324 HIS N N N N 325 HIS CA C N S 326 HIS C C N N 327 HIS O O N N 328 HIS CB C N N 329 HIS CG C Y N 330 HIS ND1 N Y N 331 HIS CD2 C Y N 332 HIS CE1 C Y N 333 HIS NE2 N Y N 334 HIS OXT O N N 335 HIS H H N N 336 HIS H2 H N N 337 HIS HA H N N 338 HIS HB2 H N N 339 HIS HB3 H N N 340 HIS HD1 H N N 341 HIS HD2 H N N 342 HIS HE1 H N N 343 HIS HE2 H N N 344 HIS HXT H N N 345 HOH O O N N 346 HOH H1 H N N 347 HOH H2 H N N 348 ILE N N N N 349 ILE CA C N S 350 ILE C C N N 351 ILE O O N N 352 ILE CB C N S 353 ILE CG1 C N N 354 ILE CG2 C N N 355 ILE CD1 C N N 356 ILE OXT O N N 357 ILE H H N N 358 ILE H2 H N N 359 ILE HA H N N 360 ILE HB H N N 361 ILE HG12 H N N 362 ILE HG13 H N N 363 ILE HG21 H N N 364 ILE HG22 H N N 365 ILE HG23 H N N 366 ILE HD11 H N N 367 ILE HD12 H N N 368 ILE HD13 H N N 369 ILE HXT H N N 370 LEU N N N N 371 LEU CA C N S 372 LEU C C N N 373 LEU O O N N 374 LEU CB C N N 375 LEU CG C N N 376 LEU CD1 C N N 377 LEU CD2 C N N 378 LEU OXT O N N 379 LEU H H N N 380 LEU H2 H N N 381 LEU HA H N N 382 LEU HB2 H N N 383 LEU HB3 H N N 384 LEU HG H N N 385 LEU HD11 H N N 386 LEU HD12 H N N 387 LEU HD13 H N N 388 LEU HD21 H N N 389 LEU HD22 H N N 390 LEU HD23 H N N 391 LEU HXT H N N 392 LYS N N N N 393 LYS CA C N S 394 LYS C C N N 395 LYS O O N N 396 LYS CB C N N 397 LYS CG C N N 398 LYS CD C N N 399 LYS CE C N N 400 LYS NZ N N N 401 LYS OXT O N N 402 LYS H H N N 403 LYS H2 H N N 404 LYS HA H N N 405 LYS HB2 H N N 406 LYS HB3 H N N 407 LYS HG2 H N N 408 LYS HG3 H N N 409 LYS HD2 H N N 410 LYS HD3 H N N 411 LYS HE2 H N N 412 LYS HE3 H N N 413 LYS HZ1 H N N 414 LYS HZ2 H N N 415 LYS HZ3 H N N 416 LYS HXT H N N 417 MET N N N N 418 MET CA C N S 419 MET C C N N 420 MET O O N N 421 MET CB C N N 422 MET CG C N N 423 MET SD S N N 424 MET CE C N N 425 MET OXT O N N 426 MET H H N N 427 MET H2 H N N 428 MET HA H N N 429 MET HB2 H N N 430 MET HB3 H N N 431 MET HG2 H N N 432 MET HG3 H N N 433 MET HE1 H N N 434 MET HE2 H N N 435 MET HE3 H N N 436 MET HXT H N N 437 PHE N N N N 438 PHE CA C N S 439 PHE C C N N 440 PHE O O N N 441 PHE CB C N N 442 PHE CG C Y N 443 PHE CD1 C Y N 444 PHE CD2 C Y N 445 PHE CE1 C Y N 446 PHE CE2 C Y N 447 PHE CZ C Y N 448 PHE OXT O N N 449 PHE H H N N 450 PHE H2 H N N 451 PHE HA H N N 452 PHE HB2 H N N 453 PHE HB3 H N N 454 PHE HD1 H N N 455 PHE HD2 H N N 456 PHE HE1 H N N 457 PHE HE2 H N N 458 PHE HZ H N N 459 PHE HXT H N N 460 PRO N N N N 461 PRO CA C N S 462 PRO C C N N 463 PRO O O N N 464 PRO CB C N N 465 PRO CG C N N 466 PRO CD C N N 467 PRO OXT O N N 468 PRO H H N N 469 PRO HA H N N 470 PRO HB2 H N N 471 PRO HB3 H N N 472 PRO HG2 H N N 473 PRO HG3 H N N 474 PRO HD2 H N N 475 PRO HD3 H N N 476 PRO HXT H N N 477 SER N N N N 478 SER CA C N S 479 SER C C N N 480 SER O O N N 481 SER CB C N N 482 SER OG O N N 483 SER OXT O N N 484 SER H H N N 485 SER H2 H N N 486 SER HA H N N 487 SER HB2 H N N 488 SER HB3 H N N 489 SER HG H N N 490 SER HXT H N N 491 THR N N N N 492 THR CA C N S 493 THR C C N N 494 THR O O N N 495 THR CB C N R 496 THR OG1 O N N 497 THR CG2 C N N 498 THR OXT O N N 499 THR H H N N 500 THR H2 H N N 501 THR HA H N N 502 THR HB H N N 503 THR HG1 H N N 504 THR HG21 H N N 505 THR HG22 H N N 506 THR HG23 H N N 507 THR HXT H N N 508 TYR N N N N 509 TYR CA C N S 510 TYR C C N N 511 TYR O O N N 512 TYR CB C N N 513 TYR CG C Y N 514 TYR CD1 C Y N 515 TYR CD2 C Y N 516 TYR CE1 C Y N 517 TYR CE2 C Y N 518 TYR CZ C Y N 519 TYR OH O N N 520 TYR OXT O N N 521 TYR H H N N 522 TYR H2 H N N 523 TYR HA H N N 524 TYR HB2 H N N 525 TYR HB3 H N N 526 TYR HD1 H N N 527 TYR HD2 H N N 528 TYR HE1 H N N 529 TYR HE2 H N N 530 TYR HH H N N 531 TYR HXT H N N 532 VAL N N N N 533 VAL CA C N S 534 VAL C C N N 535 VAL O O N N 536 VAL CB C N N 537 VAL CG1 C N N 538 VAL CG2 C N N 539 VAL OXT O N N 540 VAL H H N N 541 VAL H2 H N N 542 VAL HA H N N 543 VAL HB H N N 544 VAL HG11 H N N 545 VAL HG12 H N N 546 VAL HG13 H N N 547 VAL HG21 H N N 548 VAL HG22 H N N 549 VAL HG23 H N N 550 VAL HXT H N N 551 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DCP N1 C2 sing N N 156 DCP N1 C6 sing N N 157 DCP N1 "C1'" sing N N 158 DCP C2 N3 sing N N 159 DCP C2 O2 doub N N 160 DCP N3 C4 doub N N 161 DCP C4 C5 sing N N 162 DCP C4 N4 sing N N 163 DCP C5 C6 doub N N 164 DCP C5 H5 sing N N 165 DCP C6 H6 sing N N 166 DCP N4 HN41 sing N N 167 DCP N4 HN42 sing N N 168 DCP "C1'" "C2'" sing N N 169 DCP "C1'" "O4'" sing N N 170 DCP "C1'" "H1'" sing N N 171 DCP "C2'" "C3'" sing N N 172 DCP "C2'" "H2'1" sing N N 173 DCP "C2'" "H2'2" sing N N 174 DCP "C3'" "C4'" sing N N 175 DCP "C3'" "O3'" sing N N 176 DCP "C3'" "H3'" sing N N 177 DCP "C4'" "O4'" sing N N 178 DCP "C4'" "C5'" sing N N 179 DCP "C4'" "H4'" sing N N 180 DCP "O3'" "HO3'" sing N N 181 DCP "C5'" "O5'" sing N N 182 DCP "C5'" "H5'1" sing N N 183 DCP "C5'" "H5'2" sing N N 184 DCP "O5'" PA sing N N 185 DCP PA O1A doub N N 186 DCP PA O2A sing N N 187 DCP PA O3A sing N N 188 DCP O2A HOA2 sing N N 189 DCP O3A PB sing N N 190 DCP PB O1B doub N N 191 DCP PB O2B sing N N 192 DCP PB O3B sing N N 193 DCP O2B HOB2 sing N N 194 DCP O3B PG sing N N 195 DCP PG O1G doub N N 196 DCP PG O2G sing N N 197 DCP PG O3G sing N N 198 DCP O2G HOG2 sing N N 199 DCP O3G HOG3 sing N N 200 DG OP3 P sing N N 201 DG OP3 HOP3 sing N N 202 DG P OP1 doub N N 203 DG P OP2 sing N N 204 DG P "O5'" sing N N 205 DG OP2 HOP2 sing N N 206 DG "O5'" "C5'" sing N N 207 DG "C5'" "C4'" sing N N 208 DG "C5'" "H5'" sing N N 209 DG "C5'" "H5''" sing N N 210 DG "C4'" "O4'" sing N N 211 DG "C4'" "C3'" sing N N 212 DG "C4'" "H4'" sing N N 213 DG "O4'" "C1'" sing N N 214 DG "C3'" "O3'" sing N N 215 DG "C3'" "C2'" sing N N 216 DG "C3'" "H3'" sing N N 217 DG "O3'" "HO3'" sing N N 218 DG "C2'" "C1'" sing N N 219 DG "C2'" "H2'" sing N N 220 DG "C2'" "H2''" sing N N 221 DG "C1'" N9 sing N N 222 DG "C1'" "H1'" sing N N 223 DG N9 C8 sing Y N 224 DG N9 C4 sing Y N 225 DG C8 N7 doub Y N 226 DG C8 H8 sing N N 227 DG N7 C5 sing Y N 228 DG C5 C6 sing N N 229 DG C5 C4 doub Y N 230 DG C6 O6 doub N N 231 DG C6 N1 sing N N 232 DG N1 C2 sing N N 233 DG N1 H1 sing N N 234 DG C2 N2 sing N N 235 DG C2 N3 doub N N 236 DG N2 H21 sing N N 237 DG N2 H22 sing N N 238 DG N3 C4 sing N N 239 DT OP3 P sing N N 240 DT OP3 HOP3 sing N N 241 DT P OP1 doub N N 242 DT P OP2 sing N N 243 DT P "O5'" sing N N 244 DT OP2 HOP2 sing N N 245 DT "O5'" "C5'" sing N N 246 DT "C5'" "C4'" sing N N 247 DT "C5'" "H5'" sing N N 248 DT "C5'" "H5''" sing N N 249 DT "C4'" "O4'" sing N N 250 DT "C4'" "C3'" sing N N 251 DT "C4'" "H4'" sing N N 252 DT "O4'" "C1'" sing N N 253 DT "C3'" "O3'" sing N N 254 DT "C3'" "C2'" sing N N 255 DT "C3'" "H3'" sing N N 256 DT "O3'" "HO3'" sing N N 257 DT "C2'" "C1'" sing N N 258 DT "C2'" "H2'" sing N N 259 DT "C2'" "H2''" sing N N 260 DT "C1'" N1 sing N N 261 DT "C1'" "H1'" sing N N 262 DT N1 C2 sing N N 263 DT N1 C6 sing N N 264 DT C2 O2 doub N N 265 DT C2 N3 sing N N 266 DT N3 C4 sing N N 267 DT N3 H3 sing N N 268 DT C4 O4 doub N N 269 DT C4 C5 sing N N 270 DT C5 C7 sing N N 271 DT C5 C6 doub N N 272 DT C7 H71 sing N N 273 DT C7 H72 sing N N 274 DT C7 H73 sing N N 275 DT C6 H6 sing N N 276 GLN N CA sing N N 277 GLN N H sing N N 278 GLN N H2 sing N N 279 GLN CA C sing N N 280 GLN CA CB sing N N 281 GLN CA HA sing N N 282 GLN C O doub N N 283 GLN C OXT sing N N 284 GLN CB CG sing N N 285 GLN CB HB2 sing N N 286 GLN CB HB3 sing N N 287 GLN CG CD sing N N 288 GLN CG HG2 sing N N 289 GLN CG HG3 sing N N 290 GLN CD OE1 doub N N 291 GLN CD NE2 sing N N 292 GLN NE2 HE21 sing N N 293 GLN NE2 HE22 sing N N 294 GLN OXT HXT sing N N 295 GLU N CA sing N N 296 GLU N H sing N N 297 GLU N H2 sing N N 298 GLU CA C sing N N 299 GLU CA CB sing N N 300 GLU CA HA sing N N 301 GLU C O doub N N 302 GLU C OXT sing N N 303 GLU CB CG sing N N 304 GLU CB HB2 sing N N 305 GLU CB HB3 sing N N 306 GLU CG CD sing N N 307 GLU CG HG2 sing N N 308 GLU CG HG3 sing N N 309 GLU CD OE1 doub N N 310 GLU CD OE2 sing N N 311 GLU OE2 HE2 sing N N 312 GLU OXT HXT sing N N 313 GLY N CA sing N N 314 GLY N H sing N N 315 GLY N H2 sing N N 316 GLY CA C sing N N 317 GLY CA HA2 sing N N 318 GLY CA HA3 sing N N 319 GLY C O doub N N 320 GLY C OXT sing N N 321 GLY OXT HXT sing N N 322 HIS N CA sing N N 323 HIS N H sing N N 324 HIS N H2 sing N N 325 HIS CA C sing N N 326 HIS CA CB sing N N 327 HIS CA HA sing N N 328 HIS C O doub N N 329 HIS C OXT sing N N 330 HIS CB CG sing N N 331 HIS CB HB2 sing N N 332 HIS CB HB3 sing N N 333 HIS CG ND1 sing Y N 334 HIS CG CD2 doub Y N 335 HIS ND1 CE1 doub Y N 336 HIS ND1 HD1 sing N N 337 HIS CD2 NE2 sing Y N 338 HIS CD2 HD2 sing N N 339 HIS CE1 NE2 sing Y N 340 HIS CE1 HE1 sing N N 341 HIS NE2 HE2 sing N N 342 HIS OXT HXT sing N N 343 HOH O H1 sing N N 344 HOH O H2 sing N N 345 ILE N CA sing N N 346 ILE N H sing N N 347 ILE N H2 sing N N 348 ILE CA C sing N N 349 ILE CA CB sing N N 350 ILE CA HA sing N N 351 ILE C O doub N N 352 ILE C OXT sing N N 353 ILE CB CG1 sing N N 354 ILE CB CG2 sing N N 355 ILE CB HB sing N N 356 ILE CG1 CD1 sing N N 357 ILE CG1 HG12 sing N N 358 ILE CG1 HG13 sing N N 359 ILE CG2 HG21 sing N N 360 ILE CG2 HG22 sing N N 361 ILE CG2 HG23 sing N N 362 ILE CD1 HD11 sing N N 363 ILE CD1 HD12 sing N N 364 ILE CD1 HD13 sing N N 365 ILE OXT HXT sing N N 366 LEU N CA sing N N 367 LEU N H sing N N 368 LEU N H2 sing N N 369 LEU CA C sing N N 370 LEU CA CB sing N N 371 LEU CA HA sing N N 372 LEU C O doub N N 373 LEU C OXT sing N N 374 LEU CB CG sing N N 375 LEU CB HB2 sing N N 376 LEU CB HB3 sing N N 377 LEU CG CD1 sing N N 378 LEU CG CD2 sing N N 379 LEU CG HG sing N N 380 LEU CD1 HD11 sing N N 381 LEU CD1 HD12 sing N N 382 LEU CD1 HD13 sing N N 383 LEU CD2 HD21 sing N N 384 LEU CD2 HD22 sing N N 385 LEU CD2 HD23 sing N N 386 LEU OXT HXT sing N N 387 LYS N CA sing N N 388 LYS N H sing N N 389 LYS N H2 sing N N 390 LYS CA C sing N N 391 LYS CA CB sing N N 392 LYS CA HA sing N N 393 LYS C O doub N N 394 LYS C OXT sing N N 395 LYS CB CG sing N N 396 LYS CB HB2 sing N N 397 LYS CB HB3 sing N N 398 LYS CG CD sing N N 399 LYS CG HG2 sing N N 400 LYS CG HG3 sing N N 401 LYS CD CE sing N N 402 LYS CD HD2 sing N N 403 LYS CD HD3 sing N N 404 LYS CE NZ sing N N 405 LYS CE HE2 sing N N 406 LYS CE HE3 sing N N 407 LYS NZ HZ1 sing N N 408 LYS NZ HZ2 sing N N 409 LYS NZ HZ3 sing N N 410 LYS OXT HXT sing N N 411 MET N CA sing N N 412 MET N H sing N N 413 MET N H2 sing N N 414 MET CA C sing N N 415 MET CA CB sing N N 416 MET CA HA sing N N 417 MET C O doub N N 418 MET C OXT sing N N 419 MET CB CG sing N N 420 MET CB HB2 sing N N 421 MET CB HB3 sing N N 422 MET CG SD sing N N 423 MET CG HG2 sing N N 424 MET CG HG3 sing N N 425 MET SD CE sing N N 426 MET CE HE1 sing N N 427 MET CE HE2 sing N N 428 MET CE HE3 sing N N 429 MET OXT HXT sing N N 430 PHE N CA sing N N 431 PHE N H sing N N 432 PHE N H2 sing N N 433 PHE CA C sing N N 434 PHE CA CB sing N N 435 PHE CA HA sing N N 436 PHE C O doub N N 437 PHE C OXT sing N N 438 PHE CB CG sing N N 439 PHE CB HB2 sing N N 440 PHE CB HB3 sing N N 441 PHE CG CD1 doub Y N 442 PHE CG CD2 sing Y N 443 PHE CD1 CE1 sing Y N 444 PHE CD1 HD1 sing N N 445 PHE CD2 CE2 doub Y N 446 PHE CD2 HD2 sing N N 447 PHE CE1 CZ doub Y N 448 PHE CE1 HE1 sing N N 449 PHE CE2 CZ sing Y N 450 PHE CE2 HE2 sing N N 451 PHE CZ HZ sing N N 452 PHE OXT HXT sing N N 453 PRO N CA sing N N 454 PRO N CD sing N N 455 PRO N H sing N N 456 PRO CA C sing N N 457 PRO CA CB sing N N 458 PRO CA HA sing N N 459 PRO C O doub N N 460 PRO C OXT sing N N 461 PRO CB CG sing N N 462 PRO CB HB2 sing N N 463 PRO CB HB3 sing N N 464 PRO CG CD sing N N 465 PRO CG HG2 sing N N 466 PRO CG HG3 sing N N 467 PRO CD HD2 sing N N 468 PRO CD HD3 sing N N 469 PRO OXT HXT sing N N 470 SER N CA sing N N 471 SER N H sing N N 472 SER N H2 sing N N 473 SER CA C sing N N 474 SER CA CB sing N N 475 SER CA HA sing N N 476 SER C O doub N N 477 SER C OXT sing N N 478 SER CB OG sing N N 479 SER CB HB2 sing N N 480 SER CB HB3 sing N N 481 SER OG HG sing N N 482 SER OXT HXT sing N N 483 THR N CA sing N N 484 THR N H sing N N 485 THR N H2 sing N N 486 THR CA C sing N N 487 THR CA CB sing N N 488 THR CA HA sing N N 489 THR C O doub N N 490 THR C OXT sing N N 491 THR CB OG1 sing N N 492 THR CB CG2 sing N N 493 THR CB HB sing N N 494 THR OG1 HG1 sing N N 495 THR CG2 HG21 sing N N 496 THR CG2 HG22 sing N N 497 THR CG2 HG23 sing N N 498 THR OXT HXT sing N N 499 TYR N CA sing N N 500 TYR N H sing N N 501 TYR N H2 sing N N 502 TYR CA C sing N N 503 TYR CA CB sing N N 504 TYR CA HA sing N N 505 TYR C O doub N N 506 TYR C OXT sing N N 507 TYR CB CG sing N N 508 TYR CB HB2 sing N N 509 TYR CB HB3 sing N N 510 TYR CG CD1 doub Y N 511 TYR CG CD2 sing Y N 512 TYR CD1 CE1 sing Y N 513 TYR CD1 HD1 sing N N 514 TYR CD2 CE2 doub Y N 515 TYR CD2 HD2 sing N N 516 TYR CE1 CZ doub Y N 517 TYR CE1 HE1 sing N N 518 TYR CE2 CZ sing Y N 519 TYR CE2 HE2 sing N N 520 TYR CZ OH sing N N 521 TYR OH HH sing N N 522 TYR OXT HXT sing N N 523 VAL N CA sing N N 524 VAL N H sing N N 525 VAL N H2 sing N N 526 VAL CA C sing N N 527 VAL CA CB sing N N 528 VAL CA HA sing N N 529 VAL C O doub N N 530 VAL C OXT sing N N 531 VAL CB CG1 sing N N 532 VAL CB CG2 sing N N 533 VAL CB HB sing N N 534 VAL CG1 HG11 sing N N 535 VAL CG1 HG12 sing N N 536 VAL CG1 HG13 sing N N 537 VAL CG2 HG21 sing N N 538 VAL CG2 HG22 sing N N 539 VAL CG2 HG23 sing N N 540 VAL OXT HXT sing N N 541 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3QZ8 'b-form double helix' 3QZ8 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 19 1_555 -0.367 -0.127 -0.030 -0.655 -6.521 -2.637 1 P_DG1:DC19_T P 1 ? T 19 ? 19 1 1 B DG 2 1_555 C DC 18 1_555 -0.249 -0.085 0.110 11.214 -6.836 4.212 2 P_DG2:DC18_T P 2 ? T 18 ? 19 1 1 B DC 3 1_555 C DG 17 1_555 0.259 -0.100 -0.025 4.597 -9.644 0.252 3 P_DC3:DG17_T P 3 ? T 17 ? 19 1 1 B DA 4 1_555 C DT 16 1_555 -0.155 0.010 0.151 5.523 -13.897 4.116 4 P_DA4:DT16_T P 4 ? T 16 ? 20 1 1 B DC 5 1_555 C DG 15 1_555 -0.098 -0.124 0.003 2.732 -10.262 -0.653 5 P_DC5:DG15_T P 5 ? T 15 ? 19 1 1 B DT 6 1_555 C DA 14 1_555 0.058 -0.097 0.263 -3.703 -8.308 1.452 6 P_DT6:DA14_T P 6 ? T 14 ? 20 1 1 B DG 7 1_555 C DC 13 1_555 -0.291 -0.054 -0.028 7.393 -11.871 5.867 7 P_DG7:DC13_T P 7 ? T 13 ? 19 1 1 B DA 8 1_555 C DT 12 1_555 0.191 -0.141 -0.214 -5.971 -9.365 1.922 8 P_DA8:DT12_T P 8 ? T 12 ? 20 1 1 B DT 9 1_555 C DA 11 1_555 0.073 -0.186 0.026 -3.397 -8.873 3.136 9 P_DT9:DA11_T P 9 ? T 11 ? 20 1 1 B DC 10 1_555 C DG 10 1_555 0.060 -0.299 -0.255 0.266 -3.641 -1.639 10 P_DC10:DG10_T P 10 ? T 10 ? 19 1 1 B DA 11 1_555 C DT 8 1_555 -0.093 -0.164 -0.224 -3.113 -2.773 0.492 11 P_DA11:DT8_T P 11 ? T 8 ? 20 1 1 B DG 12 1_555 C DC 7 1_555 -0.218 -0.238 -0.075 9.587 -1.586 -2.412 12 P_DG12:DC7_T P 12 ? T 7 ? 19 1 1 B DG 13 1_555 C DC 6 1_555 -0.269 -0.211 -0.354 -7.334 -7.937 -0.432 13 P_DG13:DC6_T P 13 ? T 6 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 19 1_555 B DG 2 1_555 C DC 18 1_555 0.524 0.075 3.115 -1.873 3.910 32.055 -0.521 -1.255 3.067 7.041 3.372 32.339 1 PP_DG1DG2:DC18DC19_TT P 1 ? T 19 ? P 2 ? T 18 ? 1 B DG 2 1_555 C DC 18 1_555 B DC 3 1_555 C DG 17 1_555 -1.171 -0.119 3.496 -1.681 -0.020 39.456 -0.173 1.520 3.541 -0.029 2.489 39.490 2 PP_DG2DC3:DG17DC18_TT P 2 ? T 18 ? P 3 ? T 17 ? 1 B DC 3 1_555 C DG 17 1_555 B DA 4 1_555 C DT 16 1_555 0.280 -0.126 3.206 -0.064 8.352 34.375 -1.413 -0.470 3.091 13.879 0.107 35.345 3 PP_DC3DA4:DT16DG17_TT P 3 ? T 17 ? P 4 ? T 16 ? 1 B DA 4 1_555 C DT 16 1_555 B DC 5 1_555 C DG 15 1_555 -0.255 -0.706 3.364 -0.731 4.903 28.924 -2.463 0.345 3.209 9.726 1.450 29.337 4 PP_DA4DC5:DG15DT16_TT P 4 ? T 16 ? P 5 ? T 15 ? 1 B DC 5 1_555 C DG 15 1_555 B DT 6 1_555 C DA 14 1_555 0.014 -0.344 3.455 1.634 8.427 35.443 -1.773 0.215 3.287 13.597 -2.637 36.435 5 PP_DC5DT6:DA14DG15_TT P 5 ? T 15 ? P 6 ? T 14 ? 1 B DT 6 1_555 C DA 14 1_555 B DG 7 1_555 C DC 13 1_555 0.388 0.817 3.137 2.381 11.574 31.879 -0.473 -0.279 3.249 20.224 -4.161 33.945 6 PP_DT6DG7:DC13DA14_TT P 6 ? T 14 ? P 7 ? T 13 ? 1 B DG 7 1_555 C DC 13 1_555 B DA 8 1_555 C DT 12 1_555 -0.083 0.029 3.554 -0.575 1.224 44.047 -0.087 0.052 3.554 1.631 0.766 44.067 7 PP_DG7DA8:DT12DC13_TT P 7 ? T 13 ? P 8 ? T 12 ? 1 B DA 8 1_555 C DT 12 1_555 B DT 9 1_555 C DA 11 1_555 -0.062 -0.645 3.267 -1.621 1.956 30.504 -1.606 -0.202 3.219 3.710 3.074 30.607 8 PP_DA8DT9:DA11DT12_TT P 8 ? T 12 ? P 9 ? T 11 ? 1 B DT 9 1_555 C DA 11 1_555 B DC 10 1_555 C DG 10 1_555 0.259 0.086 3.272 3.706 -0.901 35.563 0.271 0.114 3.278 -1.470 -6.046 35.761 9 PP_DT9DC10:DG10DA11_TT P 9 ? T 11 ? P 10 ? T 10 ? 1 B DC 10 1_555 C DG 10 1_555 B DA 11 1_555 C DT 8 1_555 0.688 -0.838 3.472 -0.066 7.579 30.311 -3.042 -1.290 3.173 14.218 0.123 31.223 10 PP_DC10DA11:DT8DG10_TT P 10 ? T 10 ? P 11 ? T 8 ? 1 B DA 11 1_555 C DT 8 1_555 B DG 12 1_555 C DC 7 1_555 0.198 -0.525 3.234 -1.963 6.991 27.381 -2.640 -0.845 2.989 14.450 4.058 28.309 11 PP_DA11DG12:DC7DT8_TT P 11 ? T 8 ? P 12 ? T 7 ? 1 B DG 12 1_555 C DC 7 1_555 B DG 13 1_555 C DC 6 1_555 -0.205 -0.720 3.770 0.609 6.554 34.162 -2.337 0.449 3.571 11.029 -1.025 34.772 12 PP_DG12DG13:DC6DC7_TT P 12 ? T 7 ? P 13 ? T 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" DCP 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JX4 _pdbx_initial_refinement_model.details 'PDB ENTRY 1JX4' #