data_3R1D # _entry.id 3R1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3R1D pdb_00003r1d 10.2210/pdb3r1d/pdb NDB NA1018 ? ? RCSB RCSB064366 ? ? WWPDB D_1000064366 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-09-14 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3R1D _pdbx_database_status.recvd_initial_deposition_date 2011-03-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3R1C . unspecified PDB 3R1E . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Kierzek, R.' 2 'Krzyzosiak, W.J.' 3 'Rypniewski, W.' 4 # _citation.id primary _citation.title 'Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 7308 _citation.page_last 7315 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21596781 _citation.pdbx_database_id_DOI 10.1093/nar/gkr368 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Kierzek, R.' 2 ? primary 'Krzyzosiak, W.J.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*CP*(GRB)P*GP*CP*GP*GP*CP*GP*GP*C)-3') ; 3671.106 5 ? ? ? ? 2 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 8 ? ? ? ? 4 water nat water 18.015 206 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GC(GRB)GCGGCGGC' _entity_poly.pdbx_seq_one_letter_code_can GCXGCGGCGGC _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BROMIDE ION' BR 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 GRB n 1 4 G n 1 5 C n 1 6 G n 1 7 G n 1 8 C n 1 9 G n 1 10 G n 1 11 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence is found in human mRNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GRB 'RNA linking' n ;8-bromoguanosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 Br N5 O8 P' 442.117 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 GRB 3 3 3 GRB GRB A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 GRB 3 3 3 GRB GRB B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 GRB 3 3 3 GRB GRB C . n C 1 4 G 4 4 4 G G C . n C 1 5 C 5 5 5 C C C . n C 1 6 G 6 6 6 G G C . n C 1 7 G 7 7 7 G G C . n C 1 8 C 8 8 8 C C C . n C 1 9 G 9 9 9 G G C . n C 1 10 G 10 10 10 G G C . n C 1 11 C 11 11 11 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 C 2 2 2 C C D . n D 1 3 GRB 3 3 3 GRB GRB D . n D 1 4 G 4 4 4 G G D . n D 1 5 C 5 5 5 C C D . n D 1 6 G 6 6 6 G G D . n D 1 7 G 7 7 7 G G D . n D 1 8 C 8 8 8 C C D . n D 1 9 G 9 9 9 G G D . n D 1 10 G 10 10 10 G G D . n D 1 11 C 11 11 11 C C D . n E 1 1 G 1 1 1 G G E . n E 1 2 C 2 2 2 C C E . n E 1 3 GRB 3 3 3 GRB GRB E . n E 1 4 G 4 4 4 G G E . n E 1 5 C 5 5 5 C C E . n E 1 6 G 6 6 6 G G E . n E 1 7 G 7 7 7 G G E . n E 1 8 C 8 8 8 C C E . n E 1 9 G 9 9 9 G G E . n E 1 10 G 10 10 10 G G E . n E 1 11 C 11 11 11 C C E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 BR 1 12 12 BR BR A . G 3 SO4 1 13 13 SO4 SO4 A . H 3 SO4 1 14 14 SO4 SO4 A . I 2 BR 1 12 12 BR BR B . J 3 SO4 1 13 13 SO4 SO4 B . K 3 SO4 1 12 12 SO4 SO4 C . L 3 SO4 1 13 13 SO4 SO4 C . M 3 SO4 1 12 12 SO4 SO4 D . N 3 SO4 1 12 12 SO4 SO4 E . O 3 SO4 1 13 13 SO4 SO4 E . P 4 HOH 1 15 15 HOH HOH A . P 4 HOH 2 16 16 HOH HOH A . P 4 HOH 3 17 17 HOH HOH A . P 4 HOH 4 18 18 HOH HOH A . P 4 HOH 5 19 19 HOH HOH A . P 4 HOH 6 20 20 HOH HOH A . P 4 HOH 7 21 21 HOH HOH A . P 4 HOH 8 22 22 HOH HOH A . P 4 HOH 9 24 24 HOH HOH A . P 4 HOH 10 25 25 HOH HOH A . P 4 HOH 11 26 26 HOH HOH A . P 4 HOH 12 27 27 HOH HOH A . P 4 HOH 13 30 30 HOH HOH A . P 4 HOH 14 31 31 HOH HOH A . P 4 HOH 15 34 34 HOH HOH A . P 4 HOH 16 38 38 HOH HOH A . P 4 HOH 17 40 40 HOH HOH A . P 4 HOH 18 49 49 HOH HOH A . P 4 HOH 19 51 51 HOH HOH A . P 4 HOH 20 52 52 HOH HOH A . P 4 HOH 21 53 53 HOH HOH A . P 4 HOH 22 56 56 HOH HOH A . P 4 HOH 23 64 64 HOH HOH A . P 4 HOH 24 65 65 HOH HOH A . P 4 HOH 25 68 68 HOH HOH A . P 4 HOH 26 71 71 HOH HOH A . P 4 HOH 27 73 73 HOH HOH A . P 4 HOH 28 79 79 HOH HOH A . P 4 HOH 29 81 81 HOH HOH A . P 4 HOH 30 85 85 HOH HOH A . P 4 HOH 31 91 91 HOH HOH A . P 4 HOH 32 93 93 HOH HOH A . P 4 HOH 33 125 125 HOH HOH A . P 4 HOH 34 127 127 HOH HOH A . P 4 HOH 35 133 133 HOH HOH A . P 4 HOH 36 139 139 HOH HOH A . P 4 HOH 37 149 149 HOH HOH A . P 4 HOH 38 151 151 HOH HOH A . P 4 HOH 39 168 168 HOH HOH A . P 4 HOH 40 171 171 HOH HOH A . P 4 HOH 41 176 176 HOH HOH A . P 4 HOH 42 231 231 HOH HOH A . P 4 HOH 43 232 232 HOH HOH A . P 4 HOH 44 233 233 HOH HOH A . P 4 HOH 45 234 234 HOH HOH A . P 4 HOH 46 241 241 HOH HOH A . P 4 HOH 47 244 244 HOH HOH A . Q 4 HOH 1 14 14 HOH HOH B . Q 4 HOH 2 15 15 HOH HOH B . Q 4 HOH 3 16 16 HOH HOH B . Q 4 HOH 4 17 17 HOH HOH B . Q 4 HOH 5 18 18 HOH HOH B . Q 4 HOH 6 19 19 HOH HOH B . Q 4 HOH 7 20 20 HOH HOH B . Q 4 HOH 8 21 21 HOH HOH B . Q 4 HOH 9 22 22 HOH HOH B . Q 4 HOH 10 23 23 HOH HOH B . Q 4 HOH 11 28 28 HOH HOH B . Q 4 HOH 12 33 33 HOH HOH B . Q 4 HOH 13 35 35 HOH HOH B . Q 4 HOH 14 37 37 HOH HOH B . Q 4 HOH 15 39 39 HOH HOH B . Q 4 HOH 16 41 41 HOH HOH B . Q 4 HOH 17 43 43 HOH HOH B . Q 4 HOH 18 47 47 HOH HOH B . Q 4 HOH 19 48 48 HOH HOH B . Q 4 HOH 20 50 50 HOH HOH B . Q 4 HOH 21 57 57 HOH HOH B . Q 4 HOH 22 58 58 HOH HOH B . Q 4 HOH 23 59 59 HOH HOH B . Q 4 HOH 24 60 60 HOH HOH B . Q 4 HOH 25 61 61 HOH HOH B . Q 4 HOH 26 63 63 HOH HOH B . Q 4 HOH 27 66 66 HOH HOH B . Q 4 HOH 28 69 69 HOH HOH B . Q 4 HOH 29 108 108 HOH HOH B . Q 4 HOH 30 124 124 HOH HOH B . Q 4 HOH 31 129 129 HOH HOH B . Q 4 HOH 32 131 131 HOH HOH B . Q 4 HOH 33 142 142 HOH HOH B . Q 4 HOH 34 144 144 HOH HOH B . Q 4 HOH 35 146 146 HOH HOH B . Q 4 HOH 36 161 161 HOH HOH B . Q 4 HOH 37 162 162 HOH HOH B . Q 4 HOH 38 163 163 HOH HOH B . Q 4 HOH 39 165 165 HOH HOH B . Q 4 HOH 40 167 167 HOH HOH B . Q 4 HOH 41 178 178 HOH HOH B . Q 4 HOH 42 205 205 HOH HOH B . Q 4 HOH 43 213 213 HOH HOH B . Q 4 HOH 44 230 230 HOH HOH B . Q 4 HOH 45 235 235 HOH HOH B . Q 4 HOH 46 239 239 HOH HOH B . Q 4 HOH 47 248 248 HOH HOH B . R 4 HOH 1 14 14 HOH HOH C . R 4 HOH 2 15 15 HOH HOH C . R 4 HOH 3 16 16 HOH HOH C . R 4 HOH 4 36 36 HOH HOH C . R 4 HOH 5 44 44 HOH HOH C . R 4 HOH 6 45 45 HOH HOH C . R 4 HOH 7 46 46 HOH HOH C . R 4 HOH 8 72 72 HOH HOH C . R 4 HOH 9 80 80 HOH HOH C . R 4 HOH 10 84 84 HOH HOH C . R 4 HOH 11 86 86 HOH HOH C . R 4 HOH 12 92 92 HOH HOH C . R 4 HOH 13 94 94 HOH HOH C . R 4 HOH 14 96 96 HOH HOH C . R 4 HOH 15 104 104 HOH HOH C . R 4 HOH 16 105 105 HOH HOH C . R 4 HOH 17 106 106 HOH HOH C . R 4 HOH 18 114 114 HOH HOH C . R 4 HOH 19 120 120 HOH HOH C . R 4 HOH 20 123 123 HOH HOH C . R 4 HOH 21 128 128 HOH HOH C . R 4 HOH 22 134 134 HOH HOH C . R 4 HOH 23 143 143 HOH HOH C . R 4 HOH 24 145 145 HOH HOH C . R 4 HOH 25 154 154 HOH HOH C . R 4 HOH 26 160 160 HOH HOH C . R 4 HOH 27 164 164 HOH HOH C . R 4 HOH 28 183 183 HOH HOH C . R 4 HOH 29 184 184 HOH HOH C . R 4 HOH 30 190 190 HOH HOH C . R 4 HOH 31 191 191 HOH HOH C . R 4 HOH 32 193 193 HOH HOH C . R 4 HOH 33 194 194 HOH HOH C . R 4 HOH 34 195 195 HOH HOH C . R 4 HOH 35 196 196 HOH HOH C . R 4 HOH 36 198 198 HOH HOH C . R 4 HOH 37 208 208 HOH HOH C . R 4 HOH 38 226 226 HOH HOH C . R 4 HOH 39 236 236 HOH HOH C . R 4 HOH 40 250 250 HOH HOH C . S 4 HOH 1 54 54 HOH HOH D . S 4 HOH 2 70 70 HOH HOH D . S 4 HOH 3 74 74 HOH HOH D . S 4 HOH 4 75 75 HOH HOH D . S 4 HOH 5 76 76 HOH HOH D . S 4 HOH 6 78 78 HOH HOH D . S 4 HOH 7 82 82 HOH HOH D . S 4 HOH 8 87 87 HOH HOH D . S 4 HOH 9 90 90 HOH HOH D . S 4 HOH 10 95 95 HOH HOH D . S 4 HOH 11 98 98 HOH HOH D . S 4 HOH 12 102 102 HOH HOH D . S 4 HOH 13 103 103 HOH HOH D . S 4 HOH 14 107 107 HOH HOH D . S 4 HOH 15 109 109 HOH HOH D . S 4 HOH 16 110 110 HOH HOH D . S 4 HOH 17 112 112 HOH HOH D . S 4 HOH 18 116 116 HOH HOH D . S 4 HOH 19 119 119 HOH HOH D . S 4 HOH 20 121 121 HOH HOH D . S 4 HOH 21 122 122 HOH HOH D . S 4 HOH 22 126 126 HOH HOH D . S 4 HOH 23 136 136 HOH HOH D . S 4 HOH 24 138 138 HOH HOH D . S 4 HOH 25 141 141 HOH HOH D . S 4 HOH 26 147 147 HOH HOH D . S 4 HOH 27 148 148 HOH HOH D . S 4 HOH 28 150 150 HOH HOH D . S 4 HOH 29 152 152 HOH HOH D . S 4 HOH 30 153 153 HOH HOH D . S 4 HOH 31 155 155 HOH HOH D . S 4 HOH 32 156 156 HOH HOH D . S 4 HOH 33 172 172 HOH HOH D . S 4 HOH 34 179 179 HOH HOH D . S 4 HOH 35 186 186 HOH HOH D . S 4 HOH 36 188 188 HOH HOH D . S 4 HOH 37 189 189 HOH HOH D . S 4 HOH 38 192 192 HOH HOH D . S 4 HOH 39 197 197 HOH HOH D . S 4 HOH 40 199 199 HOH HOH D . S 4 HOH 41 220 220 HOH HOH D . S 4 HOH 42 224 224 HOH HOH D . S 4 HOH 43 249 249 HOH HOH D . S 4 HOH 44 251 251 HOH HOH D . S 4 HOH 45 252 252 HOH HOH D . T 4 HOH 1 23 23 HOH HOH E . T 4 HOH 2 67 67 HOH HOH E . T 4 HOH 3 88 88 HOH HOH E . T 4 HOH 4 99 99 HOH HOH E . T 4 HOH 5 100 100 HOH HOH E . T 4 HOH 6 101 101 HOH HOH E . T 4 HOH 7 118 118 HOH HOH E . T 4 HOH 8 132 132 HOH HOH E . T 4 HOH 9 140 140 HOH HOH E . T 4 HOH 10 158 158 HOH HOH E . T 4 HOH 11 159 159 HOH HOH E . T 4 HOH 12 173 173 HOH HOH E . T 4 HOH 13 174 174 HOH HOH E . T 4 HOH 14 200 200 HOH HOH E . T 4 HOH 15 202 202 HOH HOH E . T 4 HOH 16 204 204 HOH HOH E . T 4 HOH 17 206 206 HOH HOH E . T 4 HOH 18 207 207 HOH HOH E . T 4 HOH 19 209 209 HOH HOH E . T 4 HOH 20 211 211 HOH HOH E . T 4 HOH 21 212 212 HOH HOH E . T 4 HOH 22 214 214 HOH HOH E . T 4 HOH 23 215 215 HOH HOH E . T 4 HOH 24 216 216 HOH HOH E . T 4 HOH 25 245 245 HOH HOH E . T 4 HOH 26 246 246 HOH HOH E . T 4 HOH 27 247 247 HOH HOH E . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3R1D _cell.length_a 118.565 _cell.length_b 28.612 _cell.length_c 61.833 _cell.angle_alpha 90.00 _cell.angle_beta 117.98 _cell.angle_gamma 90.00 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3R1D _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 3R1D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '10 mM MgCl2, cacodylate, 1.0 M Li2SO4, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-03-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8126 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8126 # _reflns.entry_id 3R1D _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.45 _reflns.number_obs 32941 _reflns.number_all 32941 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.112 _reflns.pdbx_netI_over_sigmaI 10.0 _reflns.B_iso_Wilson_estimate 21.2 _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 1.47 _reflns_shell.d_res_high 1.45 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.620 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1627 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3R1D _refine.ls_number_reflns_obs 32646 _refine.ls_number_reflns_all 32646 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.967 _refine.ls_d_res_high 1.450 _refine.ls_percent_reflns_obs 98.92 _refine.ls_R_factor_obs 0.2329 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2321 _refine.ls_R_factor_R_free 0.2702 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.06 _refine.ls_number_reflns_R_free 671 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.1309 _refine.aniso_B[2][2] 0.1020 _refine.aniso_B[3][3] 0.0289 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0486 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.331 _refine.solvent_model_param_bsol 45.966 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 27.35 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1195 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 206 _refine_hist.number_atoms_total 1443 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 19.967 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1846 ? 'X-RAY DIFFRACTION' f_angle_d 1.282 ? ? 2897 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.516 ? ? 730 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.051 ? ? 364 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 74 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4500 1.5620 6357 0.3049 99.00 0.3148 . . 120 . . . . 'X-RAY DIFFRACTION' . 1.5620 1.7191 6397 0.2411 100.00 0.3018 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.7191 1.9676 6277 0.2486 98.00 0.2901 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.9676 2.4783 6370 0.2407 99.00 0.3093 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.4783 19.9684 6574 0.2136 99.00 0.2429 . . 147 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3R1D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3R1D _struct.title 'Crystal structure of GC(8BrG)GCGGCGGC duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3R1D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'CGG repeats, fragile X mental retardation, 8-bromoguanosine, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3R1D _struct_ref.pdbx_db_accession 3R1D _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GCXGCGGCGGC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3R1D A 1 ? 11 ? 3R1D 1 ? 11 ? 1 11 2 1 3R1D B 1 ? 11 ? 3R1D 1 ? 11 ? 1 11 3 1 3R1D C 1 ? 11 ? 3R1D 1 ? 11 ? 1 11 4 1 3R1D D 1 ? 11 ? 3R1D 1 ? 11 ? 1 11 5 1 3R1D E 1 ? 11 ? 3R1D 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1130 ? 1 MORE -6 ? 1 'SSA (A^2)' 4240 ? 2 'ABSA (A^2)' 1120 ? 2 MORE -5 ? 2 'SSA (A^2)' 4200 ? 3 'ABSA (A^2)' 1120 ? 3 MORE -8 ? 3 'SSA (A^2)' 4260 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,F,G,H,I,J,P,Q 2 1 C,D,K,L,M,R,S 3 1,2 E,N,O,T # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 118.5650000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 "O3'" A ? ? 1_555 A GRB 3 P A ? A C 2 A GRB 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? A C 2 "O3'" B ? ? 1_555 A GRB 3 P B ? A C 2 A GRB 3 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale both ? B C 2 "O3'" A ? ? 1_555 B GRB 3 P ? ? B C 2 B GRB 3 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale4 covale both ? B C 2 "O3'" B ? ? 1_555 B GRB 3 P ? ? B C 2 B GRB 3 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? C C 2 "O3'" A ? ? 1_555 C GRB 3 P A ? C C 2 C GRB 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale6 covale both ? C C 2 "O3'" B ? ? 1_555 C GRB 3 P B ? C C 2 C GRB 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale7 covale both ? D C 2 "O3'" ? ? ? 1_555 D GRB 3 P ? ? D C 2 D GRB 3 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale8 covale both ? E C 2 "O3'" A ? ? 1_555 E GRB 3 P A ? E C 2 E GRB 3 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale9 covale both ? E C 2 "O3'" B ? ? 1_555 E GRB 3 P B ? E C 2 E GRB 3 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A G 1 N1 A ? ? 1_555 B C 11 N3 ? ? A G 1 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 A ? ? 1_555 B C 11 O2 ? ? A G 1 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 A ? ? 1_555 B C 11 N4 ? ? A G 1 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 A ? ? 1_555 B G 10 N1 ? ? A C 2 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 A ? ? 1_555 B G 10 O6 ? ? A C 2 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 A ? ? 1_555 B G 10 N2 ? ? A C 2 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 A ? ? 1_555 B C 8 N3 ? ? A G 4 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 A ? ? 1_555 B C 8 O2 ? ? A G 4 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 A ? ? 1_555 B C 8 N4 ? ? A G 4 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 5 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 5 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 5 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N7 ? ? ? 1_555 B G 6 N2 ? ? A G 6 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B G 6 N1 ? ? A G 6 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 7 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 7 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 7 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 8 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 8 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 8 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 2 N3 A ? A G 10 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 2 O2 A ? A G 10 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 2 N4 A ? A G 10 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 1 N1 A ? A C 11 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 1 O6 A ? A C 11 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 1 N2 A ? A C 11 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 1 N1 A ? ? 1_555 D C 11 N3 ? ? C G 1 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 1 N2 A ? ? 1_555 D C 11 O2 ? ? C G 1 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 1 O6 A ? ? 1_555 D C 11 N4 ? ? C G 1 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 2 N3 A ? ? 1_555 D G 10 N1 ? ? C C 2 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 2 N4 A ? ? 1_555 D G 10 O6 ? ? C C 2 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 2 O2 A ? ? 1_555 D G 10 N2 ? ? C C 2 D G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 4 N1 A ? ? 1_555 D C 8 N3 ? ? C G 4 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 4 N2 A ? ? 1_555 D C 8 O2 ? ? C G 4 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 4 O6 A ? ? 1_555 D C 8 N4 ? ? C G 4 D C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 7 N1 A ? C C 5 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 7 O6 A ? C C 5 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 7 N2 A ? C C 5 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 6 N1 A ? ? 1_555 D G 6 O6 A ? C G 6 D G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? C G 6 N2 A ? ? 1_555 D G 6 N7 A ? C G 6 D G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 7 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 7 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 7 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 8 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 8 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 8 D G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 10 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 10 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 10 D C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 11 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 11 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 11 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E G 1 N1 A ? ? 1_555 E C 11 N3 ? ? E G 1 E C 11 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E G 1 N2 A ? ? 1_555 E C 11 O2 ? ? E G 1 E C 11 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E G 1 O6 A ? ? 1_555 E C 11 N4 ? ? E G 1 E C 11 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E C 2 N3 A ? ? 1_555 E G 10 N1 ? ? E C 2 E G 10 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E C 2 N4 A ? ? 1_555 E G 10 O6 ? ? E C 2 E G 10 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E C 2 O2 A ? ? 1_555 E G 10 N2 ? ? E C 2 E G 10 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E G 4 N1 A ? ? 1_555 E C 8 N3 ? ? E G 4 E C 8 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E G 4 N2 A ? ? 1_555 E C 8 O2 ? ? E G 4 E C 8 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E G 4 O6 A ? ? 1_555 E C 8 N4 ? ? E G 4 E C 8 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E C 5 N3 ? ? ? 1_555 E G 7 N1 A ? E C 5 E G 7 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E C 5 N4 ? ? ? 1_555 E G 7 O6 A ? E C 5 E G 7 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E C 5 O2 ? ? ? 1_555 E G 7 N2 A ? E C 5 E G 7 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E G 7 N1 A ? ? 1_555 E C 5 N3 ? ? E G 7 E C 5 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E G 7 N2 A ? ? 1_555 E C 5 O2 ? ? E G 7 E C 5 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E G 7 O6 A ? ? 1_555 E C 5 N4 ? ? E G 7 E C 5 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E C 8 N3 ? ? ? 1_555 E G 4 N1 A ? E C 8 E G 4 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E C 8 N4 ? ? ? 1_555 E G 4 O6 A ? E C 8 E G 4 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E C 8 O2 ? ? ? 1_555 E G 4 N2 A ? E C 8 E G 4 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E G 10 N1 ? ? ? 1_555 E C 2 N3 A ? E G 10 E C 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E G 10 N2 ? ? ? 1_555 E C 2 O2 A ? E G 10 E C 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E G 10 O6 ? ? ? 1_555 E C 2 N4 A ? E G 10 E C 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E C 11 N3 ? ? ? 1_555 E G 1 N1 A ? E C 11 E G 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E C 11 N4 ? ? ? 1_555 E G 1 O6 A ? E C 11 E G 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E C 11 O2 ? ? ? 1_555 E G 1 N2 A ? E C 11 E G 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BR 12 ? 3 'BINDING SITE FOR RESIDUE BR A 12' AC2 Software A SO4 13 ? 3 'BINDING SITE FOR RESIDUE SO4 A 13' AC3 Software A SO4 14 ? 4 'BINDING SITE FOR RESIDUE SO4 A 14' AC4 Software B BR 12 ? 1 'BINDING SITE FOR RESIDUE BR B 12' AC5 Software B SO4 13 ? 3 'BINDING SITE FOR RESIDUE SO4 B 13' AC6 Software C SO4 12 ? 3 'BINDING SITE FOR RESIDUE SO4 C 12' AC7 Software C SO4 13 ? 3 'BINDING SITE FOR RESIDUE SO4 C 13' AC8 Software D SO4 12 ? 6 'BINDING SITE FOR RESIDUE SO4 D 12' AC9 Software E SO4 12 ? 3 'BINDING SITE FOR RESIDUE SO4 E 12' BC1 Software E SO4 13 ? 2 'BINDING SITE FOR RESIDUE SO4 E 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GRB A 3 ? GRB A 3 . ? 1_555 ? 2 AC1 3 G B 9 ? G B 9 . ? 1_555 ? 3 AC1 3 HOH Q . ? HOH B 60 . ? 1_555 ? 4 AC2 3 C A 5 ? C A 5 . ? 1_555 ? 5 AC2 3 G A 6 ? G A 6 . ? 1_555 ? 6 AC2 3 HOH P . ? HOH A 18 . ? 1_555 ? 7 AC3 4 C A 2 ? C A 2 . ? 1_555 ? 8 AC3 4 GRB A 3 ? GRB A 3 . ? 1_555 ? 9 AC3 4 HOH P . ? HOH A 38 . ? 1_555 ? 10 AC3 4 HOH P . ? HOH A 93 . ? 1_555 ? 11 AC4 1 GRB B 3 ? GRB B 3 . ? 1_555 ? 12 AC5 3 C B 2 ? C B 2 . ? 1_555 ? 13 AC5 3 GRB B 3 ? GRB B 3 . ? 1_555 ? 14 AC5 3 HOH Q . ? HOH B 15 . ? 1_555 ? 15 AC6 3 C C 2 ? C C 2 . ? 1_555 ? 16 AC6 3 GRB C 3 ? GRB C 3 . ? 1_555 ? 17 AC6 3 HOH R . ? HOH C 183 . ? 1_555 ? 18 AC7 3 C C 5 ? C C 5 . ? 1_555 ? 19 AC7 3 G C 6 ? G C 6 . ? 1_555 ? 20 AC7 3 HOH R . ? HOH C 184 . ? 1_555 ? 21 AC8 6 C D 2 ? C D 2 . ? 1_555 ? 22 AC8 6 GRB D 3 ? GRB D 3 . ? 1_555 ? 23 AC8 6 HOH S . ? HOH D 70 . ? 1_555 ? 24 AC8 6 HOH S . ? HOH D 152 . ? 1_555 ? 25 AC8 6 HOH S . ? HOH D 186 . ? 1_555 ? 26 AC8 6 HOH S . ? HOH D 220 . ? 1_555 ? 27 AC9 3 C E 2 ? C E 2 . ? 1_555 ? 28 AC9 3 GRB E 3 ? GRB E 3 . ? 1_555 ? 29 AC9 3 HOH T . ? HOH E 207 . ? 1_555 ? 30 BC1 2 C E 5 ? C E 5 . ? 1_555 ? 31 BC1 2 G E 6 ? G E 6 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GRB 3 A GRB 3 ? G ? 2 B GRB 3 B GRB 3 ? G ? 3 C GRB 3 C GRB 3 ? G ? 4 D GRB 3 D GRB 3 ? G ? 5 E GRB 3 E GRB 3 ? G ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id E _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 214 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id T _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BR BR BR N N 1 C OP3 O N N 2 C P P N N 3 C OP1 O N N 4 C OP2 O N N 5 C "O5'" O N N 6 C "C5'" C N N 7 C "C4'" C N R 8 C "O4'" O N N 9 C "C3'" C N S 10 C "O3'" O N N 11 C "C2'" C N R 12 C "O2'" O N N 13 C "C1'" C N R 14 C N1 N N N 15 C C2 C N N 16 C O2 O N N 17 C N3 N N N 18 C C4 C N N 19 C N4 N N N 20 C C5 C N N 21 C C6 C N N 22 C HOP3 H N N 23 C HOP2 H N N 24 C "H5'" H N N 25 C "H5''" H N N 26 C "H4'" H N N 27 C "H3'" H N N 28 C "HO3'" H N N 29 C "H2'" H N N 30 C "HO2'" H N N 31 C "H1'" H N N 32 C H41 H N N 33 C H42 H N N 34 C H5 H N N 35 C H6 H N N 36 G OP3 O N N 37 G P P N N 38 G OP1 O N N 39 G OP2 O N N 40 G "O5'" O N N 41 G "C5'" C N N 42 G "C4'" C N R 43 G "O4'" O N N 44 G "C3'" C N S 45 G "O3'" O N N 46 G "C2'" C N R 47 G "O2'" O N N 48 G "C1'" C N R 49 G N9 N Y N 50 G C8 C Y N 51 G N7 N Y N 52 G C5 C Y N 53 G C6 C N N 54 G O6 O N N 55 G N1 N N N 56 G C2 C N N 57 G N2 N N N 58 G N3 N N N 59 G C4 C Y N 60 G HOP3 H N N 61 G HOP2 H N N 62 G "H5'" H N N 63 G "H5''" H N N 64 G "H4'" H N N 65 G "H3'" H N N 66 G "HO3'" H N N 67 G "H2'" H N N 68 G "HO2'" H N N 69 G "H1'" H N N 70 G H8 H N N 71 G H1 H N N 72 G H21 H N N 73 G H22 H N N 74 GRB P P N N 75 GRB BR BR N N 76 GRB N1 N N N 77 GRB C2 C N N 78 GRB N2 N N N 79 GRB N3 N N N 80 GRB C4 C Y N 81 GRB C5 C Y N 82 GRB C6 C N N 83 GRB O6 O N N 84 GRB N7 N Y N 85 GRB C8 C Y N 86 GRB N9 N Y N 87 GRB "C1'" C N R 88 GRB "C2'" C N R 89 GRB "O2'" O N N 90 GRB "C3'" C N S 91 GRB "O3'" O N N 92 GRB "C4'" C N R 93 GRB "O4'" O N N 94 GRB "C5'" C N N 95 GRB "O5'" O N N 96 GRB OP1 O N N 97 GRB OP2 O N N 98 GRB OP3 O N N 99 GRB HN1 H N N 100 GRB HN2 H N N 101 GRB HN2A H N N 102 GRB "H1'" H N N 103 GRB "H2'" H N N 104 GRB "HO2'" H N N 105 GRB "H3'" H N N 106 GRB "HO3'" H N N 107 GRB "H4'" H N N 108 GRB "H5'" H N N 109 GRB "H5'A" H N N 110 GRB HOP1 H N N 111 GRB HOP3 H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 SO4 S S N N 116 SO4 O1 O N N 117 SO4 O2 O N N 118 SO4 O3 O N N 119 SO4 O4 O N N 120 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 GRB OP2 P doub N N 77 GRB OP1 P sing N N 78 GRB P OP3 sing N N 79 GRB P "O5'" sing N N 80 GRB C8 BR sing N N 81 GRB C2 N1 sing N N 82 GRB N1 C6 sing N N 83 GRB N1 HN1 sing N N 84 GRB N2 C2 sing N N 85 GRB C2 N3 doub N N 86 GRB N2 HN2 sing N N 87 GRB N2 HN2A sing N N 88 GRB N3 C4 sing N N 89 GRB C4 C5 doub Y N 90 GRB C4 N9 sing Y N 91 GRB C6 C5 sing N N 92 GRB C5 N7 sing Y N 93 GRB C6 O6 doub N N 94 GRB N7 C8 doub Y N 95 GRB N9 C8 sing Y N 96 GRB "C1'" N9 sing N N 97 GRB "O4'" "C1'" sing N N 98 GRB "C1'" "C2'" sing N N 99 GRB "C1'" "H1'" sing N N 100 GRB "C3'" "C2'" sing N N 101 GRB "C2'" "O2'" sing N N 102 GRB "C2'" "H2'" sing N N 103 GRB "O2'" "HO2'" sing N N 104 GRB "C4'" "C3'" sing N N 105 GRB "O3'" "C3'" sing N N 106 GRB "C3'" "H3'" sing N N 107 GRB "O3'" "HO3'" sing N N 108 GRB "C5'" "C4'" sing N N 109 GRB "C4'" "O4'" sing N N 110 GRB "C4'" "H4'" sing N N 111 GRB "O5'" "C5'" sing N N 112 GRB "C5'" "H5'" sing N N 113 GRB "C5'" "H5'A" sing N N 114 GRB OP1 HOP1 sing N N 115 GRB OP3 HOP3 sing N N 116 HOH O H1 sing N N 117 HOH O H2 sing N N 118 SO4 S O1 doub N N 119 SO4 S O2 doub N N 120 SO4 S O3 sing N N 121 SO4 S O4 sing N N 122 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3R1D 'double helix' 3R1D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A C 11 1_555 -0.674 -0.005 0.259 -2.469 -9.336 -2.677 1 B_G1:C11_A B 1 ? A 11 ? 19 1 1 B C 2 1_555 A G 10 1_555 0.196 0.191 0.527 -0.449 -7.148 -2.502 2 B_C2:G10_A B 2 ? A 10 ? 19 1 1 B G 4 1_555 A C 8 1_555 -0.108 -0.139 0.404 6.249 -8.438 -2.737 3 B_G4:C8_A B 4 ? A 8 ? 19 1 1 B C 5 1_555 A G 7 1_555 0.238 -0.135 0.076 4.075 -10.338 0.279 4 B_C5:G7_A B 5 ? A 7 ? 19 1 1 B G 6 1_555 A G 6 1_555 1.509 3.519 0.141 -12.427 2.749 -88.434 5 B_G6:G6_A B 6 ? A 6 ? 6 3 1 B G 7 1_555 A C 5 1_555 -0.165 -0.086 0.033 -4.515 -3.950 0.872 6 B_G7:C5_A B 7 ? A 5 ? 19 1 1 B C 8 1_555 A G 4 1_555 0.252 -0.077 -0.175 -0.298 -6.529 0.765 7 B_C8:G4_A B 8 ? A 4 ? 19 1 1 B G 10 1_555 A C 2 1_555 -0.127 -0.329 0.140 5.160 -11.050 1.044 8 B_G10:C2_A B 10 ? A 2 ? 19 1 1 B C 11 1_555 A G 1 1_555 0.073 -0.122 -0.144 4.857 -9.024 3.124 9 B_C11:G1_A B 11 ? A 1 ? 19 1 1 C G 1 1_555 D C 11 1_555 -0.427 -0.158 -0.241 -3.740 -11.342 7.402 10 C_G1:C11_D C 1 ? D 11 ? 19 1 1 C C 2 1_555 D G 10 1_555 0.120 -0.260 0.183 -5.819 -13.186 2.049 11 C_C2:G10_D C 2 ? D 10 ? 19 1 1 C G 4 1_555 D C 8 1_555 -0.435 0.075 0.147 -4.667 -2.518 -1.088 12 C_G4:C8_D C 4 ? D 8 ? 19 1 1 C C 5 1_555 D G 7 1_555 0.818 0.067 -0.067 1.846 -4.927 -0.021 13 C_C5:G7_D C 5 ? D 7 ? 19 1 1 C G 6 1_555 D G 6 1_555 1.517 3.504 0.235 -12.923 -0.431 -88.970 14 C_G6:G6_D C 6 ? D 6 ? 6 3 1 C G 7 1_555 D C 5 1_555 -0.107 -0.137 0.087 -3.856 -10.587 0.957 15 C_G7:C5_D C 7 ? D 5 ? 19 1 1 C C 8 1_555 D G 4 1_555 0.138 -0.120 0.207 1.346 -9.252 -2.519 16 C_C8:G4_D C 8 ? D 4 ? 19 1 1 C G 10 1_555 D C 2 1_555 -0.115 -0.127 0.082 2.000 -6.799 -1.999 17 C_G10:C2_D C 10 ? D 2 ? 19 1 1 C C 11 1_555 D G 1 1_555 0.464 -0.097 -0.051 7.406 -6.275 3.573 18 C_C11:G1_D C 11 ? D 1 ? 19 1 1 E G 1 1_555 E C 11 2_655 0.175 0.197 0.369 -3.893 -7.328 -3.185 19 E_G1:C11_E E 1 ? E 11 ? 19 1 1 E C 2 1_555 E G 10 2_655 0.923 -0.023 0.703 0.100 -6.691 -3.842 20 E_C2:G10_E E 2 ? E 10 ? 19 1 1 E G 1 1_555 E C 11 1_555 0.175 0.197 0.369 -3.893 -7.328 -3.185 21 E_G1:C11_E E 1 ? E 11 ? 19 1 1 E C 2 1_555 E G 10 1_555 0.923 -0.023 0.703 0.100 -6.691 -3.842 22 E_C2:G10_E E 2 ? E 10 ? 19 1 1 E G 4 1_555 E C 8 2_655 -0.285 -0.303 0.512 4.739 -5.851 -5.310 23 E_G4:C8_E E 4 ? E 8 ? 19 1 1 E C 5 1_555 E G 7 2_655 0.437 -0.428 -0.017 3.341 -8.246 -1.741 24 E_C5:G7_E E 5 ? E 7 ? 19 1 1 E G 4 1_555 E C 8 1_555 -0.285 -0.303 0.512 4.739 -5.851 -5.310 25 E_G4:C8_E E 4 ? E 8 ? 19 1 1 E C 5 1_555 E G 7 1_555 0.437 -0.428 -0.017 3.341 -8.246 -1.741 26 E_C5:G7_E E 5 ? E 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A C 11 1_555 B C 2 1_555 A G 10 1_555 0.271 -1.285 3.309 -1.681 4.462 34.316 -2.835 -0.710 3.106 7.518 2.832 34.636 1 BB_G1C2:G10C11_AA B 1 ? A 11 ? B 2 ? A 10 ? 1 B C 2 1_555 A G 10 1_555 B G 4 1_555 A C 8 1_555 -0.716 -4.629 5.825 -3.287 6.052 56.663 -5.419 0.439 5.377 6.350 3.449 57.046 2 BB_C2G4:C8G10_AA B 2 ? A 10 ? B 4 ? A 8 ? 1 B G 4 1_555 A C 8 1_555 B C 5 1_555 A G 7 1_555 0.574 -1.849 3.324 2.781 4.599 35.659 -3.633 -0.538 3.103 7.458 -4.509 36.048 3 BB_G4C5:G7C8_AA B 4 ? A 8 ? B 5 ? A 7 ? 1 B C 5 1_555 A G 7 1_555 B G 6 1_555 A G 6 1_555 0.806 -3.818 3.223 8.679 4.329 78.550 -3.114 -0.404 3.105 3.407 -6.830 79.050 4 BB_C5G6:G6G7_AA B 5 ? A 7 ? B 6 ? A 6 ? 1 B G 6 1_555 A G 6 1_555 B G 7 1_555 A C 5 1_555 -1.043 -0.459 3.319 0.428 2.555 -26.899 0.316 -2.122 3.363 -5.476 0.917 -27.021 5 BB_G6G7:C5G6_AA B 6 ? A 6 ? B 7 ? A 5 ? 1 B G 7 1_555 A C 5 1_555 B C 8 1_555 A G 4 1_555 -0.697 -1.720 3.371 -0.657 1.493 33.875 -3.194 1.088 3.307 2.561 1.126 33.913 6 BB_G7C8:G4C5_AA B 7 ? A 5 ? B 8 ? A 4 ? 1 B C 8 1_555 A G 4 1_555 B G 10 1_555 A C 2 1_555 0.187 -4.099 6.137 -3.373 9.311 55.415 -5.291 -0.540 5.420 9.924 3.595 56.224 7 BB_C8G10:C2G4_AA B 8 ? A 4 ? B 10 ? A 2 ? 1 B G 10 1_555 A C 2 1_555 B C 11 1_555 A G 1 1_555 0.214 -1.757 3.268 1.299 1.982 36.043 -3.110 -0.165 3.175 3.199 -2.097 36.118 8 BB_G10C11:G1C2_AA B 10 ? A 2 ? B 11 ? A 1 ? 1 B C 11 1_555 A G 1 1_555 C G 1 1_555 D C 11 1_555 0.294 -4.042 3.448 2.277 6.606 -17.078 7.979 2.513 4.596 -21.131 7.284 -18.443 9 BC_C11G1:C11G1_DA B 11 ? A 1 ? C 1 ? D 11 ? 1 C G 1 1_555 D C 11 1_555 C C 2 1_555 D G 10 1_555 -0.625 -2.244 3.331 -2.310 1.778 31.237 -4.487 0.718 3.238 3.292 4.279 31.370 10 CC_G1C2:G10C11_DD C 1 ? D 11 ? C 2 ? D 10 ? 1 C G 4 1_555 D C 8 1_555 C C 5 1_555 D G 7 1_555 0.191 -2.352 3.308 2.365 -3.045 33.448 -3.543 0.073 3.507 -5.270 -4.093 33.664 11 CC_G4C5:G7C8_DD C 4 ? D 8 ? C 5 ? D 7 ? 1 C C 5 1_555 D G 7 1_555 C G 6 1_555 D G 6 1_555 0.357 -3.728 3.213 4.095 3.678 76.319 -3.114 -0.173 3.071 2.973 -3.309 76.487 12 CC_C5G6:G6G7_DD C 5 ? D 7 ? C 6 ? D 6 ? 1 C G 6 1_555 D G 6 1_555 C G 7 1_555 D C 5 1_555 -1.376 0.259 3.191 -2.058 3.357 -19.226 -2.300 -4.980 2.940 -9.917 -6.078 -19.621 13 CC_G6G7:C5G6_DD C 6 ? D 6 ? C 7 ? D 5 ? 1 C G 7 1_555 D C 5 1_555 C C 8 1_555 D G 4 1_555 -0.456 -1.155 3.140 -1.909 6.558 34.753 -2.799 0.488 2.901 10.850 3.158 35.398 14 CC_G7C8:G4C5_DD C 7 ? D 5 ? C 8 ? D 4 ? 1 C C 8 1_555 D G 4 1_555 C G 10 1_555 D C 2 1_555 0.675 -3.645 6.231 2.022 10.264 62.405 -4.312 -0.481 5.649 9.832 -1.937 63.188 15 CC_C8G10:C2G4_DD C 8 ? D 4 ? C 10 ? D 2 ? 1 C G 10 1_555 D C 2 1_555 C C 11 1_555 D G 1 1_555 0.785 -1.957 3.222 0.155 0.384 30.967 -3.739 -1.441 3.202 0.720 -0.290 30.969 16 CC_G10C11:G1C2_DD C 10 ? D 2 ? C 11 ? D 1 ? 1 E G 1 1_555 E C 11 2_655 E C 2 1_555 E G 10 2_655 0.027 -1.321 3.270 0.022 4.569 35.765 -2.767 -0.040 3.083 7.402 -0.035 36.046 17 EE_G1C2:G10C11_EE E 1 ? E 11 ? E 2 ? E 10 ? 1 E G 1 1_555 E C 11 1_555 E C 2 1_555 E G 10 1_555 0.027 -1.321 3.270 0.022 4.569 35.765 -2.767 -0.040 3.083 7.402 -0.035 36.046 18 EE_G1C2:G10C11_EE E 1 ? E 11 ? E 2 ? E 10 ? 1 E G 4 1_555 E C 8 2_655 E C 5 1_555 E G 7 2_655 0.407 -1.947 3.346 2.488 4.068 38.383 -3.440 -0.309 3.150 6.159 -3.766 38.667 19 EE_G4C5:G7C8_EE E 4 ? E 8 ? E 5 ? E 7 ? 1 E G 4 1_555 E C 8 1_555 E C 5 1_555 E G 7 1_555 0.407 -1.947 3.346 2.487 4.068 38.383 -3.440 -0.309 3.150 6.159 -3.766 38.667 20 EE_G4C5:G7C8_EE E 4 ? E 8 ? E 5 ? E 7 ? # _atom_sites.entry_id 3R1D _atom_sites.fract_transf_matrix[1][1] 0.008434 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004481 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034950 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018313 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P S # loop_