data_3RDS # _entry.id 3RDS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RDS pdb_00003rds 10.2210/pdb3rds/pdb RCSB RCSB064806 ? ? WWPDB D_1000064806 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3RDM unspecified . PDB 3RDO unspecified . PDB 3RDQ unspecified . PDB 3RDU unspecified . PDB 3RDX unspecified . PDB 3RE5 unspecified . PDB 3RE6 unspecified . # _pdbx_database_status.entry_id 3RDS _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-04-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Magalhaes, M.' 2 'Czecster, C.M.' 3 'Guan, R.' 4 'Levy, M.' 5 'Almo, S.C.' 6 # _citation.id primary _citation.title 'Evolved streptavidin mutants reveal key role of loop residue in high-affinity binding.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 20 _citation.page_first 1145 _citation.page_last 1154 _citation.year 2011 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21520321 _citation.pdbx_database_id_DOI 10.1002/pro.642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Magalhaes, M.L.' 1 ? primary 'Czekster, C.M.' 2 ? primary 'Guan, R.' 3 ? primary 'Malashkevich, V.N.' 4 ? primary 'Almo, S.C.' 5 ? primary 'Levy, M.' 6 ? # _cell.entry_id 3RDS _cell.length_a 57.469 _cell.length_b 57.469 _cell.length_c 173.492 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RDS _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Streptavidin 15966.381 1 ? 'T90S, W108V, L110T, F29L, S52G, R53S' 'UNP Residues 37-164' ? 2 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 3 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSGSHHHHHHSSGIEGRGRLIKHMTAEAGITGTWYNQLGSTLIVTAGADGALTGTYESAVGNAEGSYVLTGRYDSAPATD GSGTALGWTVAWKNNYRNAHSASTWSGQYVGGAEARINTQVLTTSGTTEANAWKSTLVGHDTFTKVKPSAASI ; _entity_poly.pdbx_seq_one_letter_code_can ;MSGSHHHHHHSSGIEGRGRLIKHMTAEAGITGTWYNQLGSTLIVTAGADGALTGTYESAVGNAEGSYVLTGRYDSAPATD GSGTALGWTVAWKNNYRNAHSASTWSGQYVGGAEARINTQVLTTSGTTEANAWKSTLVGHDTFTKVKPSAASI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ILE n 1 15 GLU n 1 16 GLY n 1 17 ARG n 1 18 GLY n 1 19 ARG n 1 20 LEU n 1 21 ILE n 1 22 LYS n 1 23 HIS n 1 24 MET n 1 25 THR n 1 26 ALA n 1 27 GLU n 1 28 ALA n 1 29 GLY n 1 30 ILE n 1 31 THR n 1 32 GLY n 1 33 THR n 1 34 TRP n 1 35 TYR n 1 36 ASN n 1 37 GLN n 1 38 LEU n 1 39 GLY n 1 40 SER n 1 41 THR n 1 42 LEU n 1 43 ILE n 1 44 VAL n 1 45 THR n 1 46 ALA n 1 47 GLY n 1 48 ALA n 1 49 ASP n 1 50 GLY n 1 51 ALA n 1 52 LEU n 1 53 THR n 1 54 GLY n 1 55 THR n 1 56 TYR n 1 57 GLU n 1 58 SER n 1 59 ALA n 1 60 VAL n 1 61 GLY n 1 62 ASN n 1 63 ALA n 1 64 GLU n 1 65 GLY n 1 66 SER n 1 67 TYR n 1 68 VAL n 1 69 LEU n 1 70 THR n 1 71 GLY n 1 72 ARG n 1 73 TYR n 1 74 ASP n 1 75 SER n 1 76 ALA n 1 77 PRO n 1 78 ALA n 1 79 THR n 1 80 ASP n 1 81 GLY n 1 82 SER n 1 83 GLY n 1 84 THR n 1 85 ALA n 1 86 LEU n 1 87 GLY n 1 88 TRP n 1 89 THR n 1 90 VAL n 1 91 ALA n 1 92 TRP n 1 93 LYS n 1 94 ASN n 1 95 ASN n 1 96 TYR n 1 97 ARG n 1 98 ASN n 1 99 ALA n 1 100 HIS n 1 101 SER n 1 102 ALA n 1 103 SER n 1 104 THR n 1 105 TRP n 1 106 SER n 1 107 GLY n 1 108 GLN n 1 109 TYR n 1 110 VAL n 1 111 GLY n 1 112 GLY n 1 113 ALA n 1 114 GLU n 1 115 ALA n 1 116 ARG n 1 117 ILE n 1 118 ASN n 1 119 THR n 1 120 GLN n 1 121 VAL n 1 122 LEU n 1 123 THR n 1 124 THR n 1 125 SER n 1 126 GLY n 1 127 THR n 1 128 THR n 1 129 GLU n 1 130 ALA n 1 131 ASN n 1 132 ALA n 1 133 TRP n 1 134 LYS n 1 135 SER n 1 136 THR n 1 137 LEU n 1 138 VAL n 1 139 GLY n 1 140 HIS n 1 141 ASP n 1 142 THR n 1 143 PHE n 1 144 THR n 1 145 LYS n 1 146 VAL n 1 147 LYS n 1 148 PRO n 1 149 SER n 1 150 ALA n 1 151 ALA n 1 152 SER n 1 153 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces avidinii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1895 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)CODON+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCR2.1-TOPO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV_STRAV _struct_ref.pdbx_db_accession P22629 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTW SGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASI ; _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3RDS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 26 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22629 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 164 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 140 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RDS MET A 1 ? UNP P22629 ? ? 'expression tag' -12 1 1 3RDS SER A 2 ? UNP P22629 ? ? 'expression tag' -11 2 1 3RDS GLY A 3 ? UNP P22629 ? ? 'expression tag' -10 3 1 3RDS SER A 4 ? UNP P22629 ? ? 'expression tag' -9 4 1 3RDS HIS A 5 ? UNP P22629 ? ? 'expression tag' -8 5 1 3RDS HIS A 6 ? UNP P22629 ? ? 'expression tag' -7 6 1 3RDS HIS A 7 ? UNP P22629 ? ? 'expression tag' -6 7 1 3RDS HIS A 8 ? UNP P22629 ? ? 'expression tag' -5 8 1 3RDS HIS A 9 ? UNP P22629 ? ? 'expression tag' -4 9 1 3RDS HIS A 10 ? UNP P22629 ? ? 'expression tag' -3 10 1 3RDS SER A 11 ? UNP P22629 ? ? 'expression tag' -2 11 1 3RDS SER A 12 ? UNP P22629 ? ? 'expression tag' -1 12 1 3RDS GLY A 13 ? UNP P22629 ? ? 'expression tag' 0 13 1 3RDS ILE A 14 ? UNP P22629 ? ? 'expression tag' 1 14 1 3RDS GLU A 15 ? UNP P22629 ? ? 'expression tag' 2 15 1 3RDS GLY A 16 ? UNP P22629 ? ? 'expression tag' 3 16 1 3RDS ARG A 17 ? UNP P22629 ? ? 'expression tag' 4 17 1 3RDS GLY A 18 ? UNP P22629 ? ? 'expression tag' 5 18 1 3RDS ARG A 19 ? UNP P22629 ? ? 'expression tag' 6 19 1 3RDS LEU A 20 ? UNP P22629 ? ? 'expression tag' 7 20 1 3RDS ILE A 21 ? UNP P22629 ? ? 'expression tag' 8 21 1 3RDS LYS A 22 ? UNP P22629 ? ? 'expression tag' 9 22 1 3RDS HIS A 23 ? UNP P22629 ? ? 'expression tag' 10 23 1 3RDS MET A 24 ? UNP P22629 ? ? 'expression tag' 11 24 1 3RDS THR A 25 ? UNP P22629 ? ? 'expression tag' 12 25 1 3RDS LEU A 42 ? UNP P22629 PHE 53 'engineered mutation' 29 26 1 3RDS GLY A 65 ? UNP P22629 SER 76 'engineered mutation' 52 27 1 3RDS SER A 66 ? UNP P22629 ARG 77 'engineered mutation' 53 28 1 3RDS SER A 103 ? UNP P22629 THR 114 'engineered mutation' 90 29 1 3RDS VAL A 121 ? UNP P22629 TRP 132 'engineered mutation' 108 30 1 3RDS THR A 123 ? UNP P22629 LEU 134 'engineered mutation' 110 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3RDS _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '25% PEG 1500, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-10-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3RDS _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 50.000 _reflns.number_obs 22001 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_netI_over_sigmaI 14.800 _reflns.pdbx_chi_squared 1.456 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 92.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.550 ? ? ? 0.318 ? ? 0.864 5.200 ? 2075 88.800 1 1 1.550 1.620 ? ? ? 0.297 ? ? 0.915 6.400 ? 2162 93.000 2 2 1.620 1.690 ? ? ? 0.224 ? ? 0.916 7.100 ? 2220 94.100 3 3 1.690 1.780 ? ? ? 0.171 ? ? 1.021 7.500 ? 2213 94.500 4 4 1.780 1.890 ? ? ? 0.115 ? ? 1.219 7.500 ? 2213 93.900 5 5 1.890 2.040 ? ? ? 0.084 ? ? 1.466 7.600 ? 2222 93.500 6 6 2.040 2.240 ? ? ? 0.067 ? ? 1.709 7.600 ? 2210 93.100 7 7 2.240 2.560 ? ? ? 0.062 ? ? 2.050 7.600 ? 2194 91.500 8 8 2.560 3.230 ? ? ? 0.053 ? ? 2.409 7.500 ? 2224 91.200 9 9 3.230 50.000 ? ? ? 0.033 ? ? 1.610 7.100 ? 2268 87.700 10 10 # _refine.entry_id 3RDS _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 19.1300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.0700 _refine.ls_number_reflns_obs 21948 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1908 _refine.ls_R_factor_R_work 0.1896 _refine.ls_wR_factor_R_work 0.1933 _refine.ls_R_factor_R_free 0.2142 _refine.ls_wR_factor_R_free 0.2027 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_number_reflns_R_free 1132 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.140 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] -0.0100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9570 _refine.correlation_coeff_Fo_to_Fc_free 0.9310 _refine.overall_SU_R_Cruickshank_DPI 0.0767 _refine.overall_SU_R_free 0.0769 _refine.pdbx_overall_ESU_R_Free 0.0770 _refine.overall_SU_ML 0.0390 _refine.overall_SU_B 2.0200 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3RDM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8889 _refine.B_iso_max 84.730 _refine.B_iso_min 10.100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.077 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 898 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1041 _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 19.1300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 991 0.012 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1361 1.543 1.913 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 136 6.941 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 41 26.292 24.390 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 139 14.155 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 14.519 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 153 0.117 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 761 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 625 1.357 3.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1001 3.552 50.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 366 6.732 50.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 353 1.560 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.5390 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.8500 _refine_ls_shell.number_reflns_R_work 1438 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2740 _refine_ls_shell.R_factor_R_free 0.2870 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1514 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RDS _struct.title 'Crystal structure of the refolded R7-2 streptavidin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RDS _struct_keywords.text 'Streptavidin variants, improved desthiobiotin binding, opened loop destabilization, BIOTIN BINDING PROTEIN' _struct_keywords.pdbx_keywords 'BIOTIN BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 25 ? THR A 31 ? THR A 12 THR A 18 1 ? 7 HELX_P HELX_P2 2 THR A 128 ? LYS A 134 ? THR A 115 LYS A 121 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 32 ? TYR A 35 ? GLY A 19 TYR A 22 A 2 THR A 41 ? ALA A 46 ? THR A 28 ALA A 33 A 3 ALA A 51 ? GLU A 57 ? ALA A 38 GLU A 44 A 4 TYR A 67 ? TYR A 73 ? TYR A 54 TYR A 60 A 5 THR A 84 ? LYS A 93 ? THR A 71 LYS A 80 A 6 ASN A 98 ? VAL A 110 ? ASN A 85 VAL A 97 A 7 ARG A 116 ? SER A 125 ? ARG A 103 SER A 112 A 8 THR A 136 ? THR A 144 ? THR A 123 THR A 131 A 9 GLY A 32 ? TYR A 35 ? GLY A 19 TYR A 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 32 ? N GLY A 19 O VAL A 44 ? O VAL A 31 A 2 3 N THR A 45 ? N THR A 32 O THR A 53 ? O THR A 40 A 3 4 N TYR A 56 ? N TYR A 43 O TYR A 67 ? O TYR A 54 A 4 5 N THR A 70 ? N THR A 57 O THR A 89 ? O THR A 76 A 5 6 N TRP A 92 ? N TRP A 79 O SER A 101 ? O SER A 88 A 6 7 N VAL A 110 ? N VAL A 97 O ARG A 116 ? O ARG A 103 A 7 8 N ILE A 117 ? N ILE A 104 O PHE A 143 ? O PHE A 130 A 8 9 O THR A 144 ? O THR A 131 N TYR A 35 ? N TYR A 22 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 1PE _struct_site.pdbx_auth_seq_id 700 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE 1PE A 700' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 58 ? SER A 45 . ? 1_555 ? 2 AC1 9 VAL A 60 ? VAL A 47 . ? 1_555 ? 3 AC1 9 GLY A 61 ? GLY A 48 . ? 1_555 ? 4 AC1 9 ASN A 62 ? ASN A 49 . ? 1_555 ? 5 AC1 9 TRP A 92 ? TRP A 79 . ? 1_555 ? 6 AC1 9 SER A 101 ? SER A 88 . ? 1_555 ? 7 AC1 9 TRP A 133 ? TRP A 120 . ? 10_445 ? 8 AC1 9 ASP A 141 ? ASP A 128 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 267 . ? 1_555 ? # _atom_sites.entry_id 3RDS _atom_sites.fract_transf_matrix[1][1] 0.017401 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017401 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005764 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 SER 2 -11 ? ? ? A . n A 1 3 GLY 3 -10 ? ? ? A . n A 1 4 SER 4 -9 ? ? ? A . n A 1 5 HIS 5 -8 ? ? ? A . n A 1 6 HIS 6 -7 ? ? ? A . n A 1 7 HIS 7 -6 ? ? ? A . n A 1 8 HIS 8 -5 ? ? ? A . n A 1 9 HIS 9 -4 ? ? ? A . n A 1 10 HIS 10 -3 ? ? ? A . n A 1 11 SER 11 -2 ? ? ? A . n A 1 12 SER 12 -1 ? ? ? A . n A 1 13 GLY 13 0 ? ? ? A . n A 1 14 ILE 14 1 ? ? ? A . n A 1 15 GLU 15 2 ? ? ? A . n A 1 16 GLY 16 3 ? ? ? A . n A 1 17 ARG 17 4 ? ? ? A . n A 1 18 GLY 18 5 ? ? ? A . n A 1 19 ARG 19 6 ? ? ? A . n A 1 20 LEU 20 7 ? ? ? A . n A 1 21 ILE 21 8 ? ? ? A . n A 1 22 LYS 22 9 ? ? ? A . n A 1 23 HIS 23 10 ? ? ? A . n A 1 24 MET 24 11 ? ? ? A . n A 1 25 THR 25 12 12 THR THR A . n A 1 26 ALA 26 13 13 ALA ALA A . n A 1 27 GLU 27 14 14 GLU GLU A . n A 1 28 ALA 28 15 15 ALA ALA A . n A 1 29 GLY 29 16 16 GLY GLY A . n A 1 30 ILE 30 17 17 ILE ILE A . n A 1 31 THR 31 18 18 THR THR A . n A 1 32 GLY 32 19 19 GLY GLY A . n A 1 33 THR 33 20 20 THR THR A . n A 1 34 TRP 34 21 21 TRP TRP A . n A 1 35 TYR 35 22 22 TYR TYR A . n A 1 36 ASN 36 23 23 ASN ASN A . n A 1 37 GLN 37 24 24 GLN GLN A . n A 1 38 LEU 38 25 25 LEU LEU A . n A 1 39 GLY 39 26 26 GLY GLY A . n A 1 40 SER 40 27 27 SER SER A . n A 1 41 THR 41 28 28 THR THR A . n A 1 42 LEU 42 29 29 LEU LEU A . n A 1 43 ILE 43 30 30 ILE ILE A . n A 1 44 VAL 44 31 31 VAL VAL A . n A 1 45 THR 45 32 32 THR THR A . n A 1 46 ALA 46 33 33 ALA ALA A . n A 1 47 GLY 47 34 34 GLY GLY A . n A 1 48 ALA 48 35 35 ALA ALA A . n A 1 49 ASP 49 36 36 ASP ASP A . n A 1 50 GLY 50 37 37 GLY GLY A . n A 1 51 ALA 51 38 38 ALA ALA A . n A 1 52 LEU 52 39 39 LEU LEU A . n A 1 53 THR 53 40 40 THR THR A . n A 1 54 GLY 54 41 41 GLY GLY A . n A 1 55 THR 55 42 42 THR THR A . n A 1 56 TYR 56 43 43 TYR TYR A . n A 1 57 GLU 57 44 44 GLU GLU A . n A 1 58 SER 58 45 45 SER SER A . n A 1 59 ALA 59 46 46 ALA ALA A . n A 1 60 VAL 60 47 47 VAL VAL A . n A 1 61 GLY 61 48 48 GLY GLY A . n A 1 62 ASN 62 49 49 ASN ASN A . n A 1 63 ALA 63 50 50 ALA ALA A . n A 1 64 GLU 64 51 51 GLU GLU A . n A 1 65 GLY 65 52 52 GLY GLY A . n A 1 66 SER 66 53 53 SER SER A . n A 1 67 TYR 67 54 54 TYR TYR A . n A 1 68 VAL 68 55 55 VAL VAL A . n A 1 69 LEU 69 56 56 LEU LEU A . n A 1 70 THR 70 57 57 THR THR A . n A 1 71 GLY 71 58 58 GLY GLY A . n A 1 72 ARG 72 59 59 ARG ARG A . n A 1 73 TYR 73 60 60 TYR TYR A . n A 1 74 ASP 74 61 61 ASP ASP A . n A 1 75 SER 75 62 62 SER SER A . n A 1 76 ALA 76 63 63 ALA ALA A . n A 1 77 PRO 77 64 64 PRO PRO A . n A 1 78 ALA 78 65 65 ALA ALA A . n A 1 79 THR 79 66 66 THR THR A . n A 1 80 ASP 80 67 67 ASP ASP A . n A 1 81 GLY 81 68 68 GLY GLY A . n A 1 82 SER 82 69 69 SER SER A . n A 1 83 GLY 83 70 70 GLY GLY A . n A 1 84 THR 84 71 71 THR THR A . n A 1 85 ALA 85 72 72 ALA ALA A . n A 1 86 LEU 86 73 73 LEU LEU A . n A 1 87 GLY 87 74 74 GLY GLY A . n A 1 88 TRP 88 75 75 TRP TRP A . n A 1 89 THR 89 76 76 THR THR A . n A 1 90 VAL 90 77 77 VAL VAL A . n A 1 91 ALA 91 78 78 ALA ALA A . n A 1 92 TRP 92 79 79 TRP TRP A . n A 1 93 LYS 93 80 80 LYS LYS A . n A 1 94 ASN 94 81 81 ASN ASN A . n A 1 95 ASN 95 82 82 ASN ASN A . n A 1 96 TYR 96 83 83 TYR TYR A . n A 1 97 ARG 97 84 84 ARG ARG A . n A 1 98 ASN 98 85 85 ASN ASN A . n A 1 99 ALA 99 86 86 ALA ALA A . n A 1 100 HIS 100 87 87 HIS HIS A . n A 1 101 SER 101 88 88 SER SER A . n A 1 102 ALA 102 89 89 ALA ALA A . n A 1 103 SER 103 90 90 SER SER A . n A 1 104 THR 104 91 91 THR THR A . n A 1 105 TRP 105 92 92 TRP TRP A . n A 1 106 SER 106 93 93 SER SER A . n A 1 107 GLY 107 94 94 GLY GLY A . n A 1 108 GLN 108 95 95 GLN GLN A . n A 1 109 TYR 109 96 96 TYR TYR A . n A 1 110 VAL 110 97 97 VAL VAL A . n A 1 111 GLY 111 98 98 GLY GLY A . n A 1 112 GLY 112 99 99 GLY GLY A . n A 1 113 ALA 113 100 100 ALA ALA A . n A 1 114 GLU 114 101 101 GLU GLU A . n A 1 115 ALA 115 102 102 ALA ALA A . n A 1 116 ARG 116 103 103 ARG ARG A . n A 1 117 ILE 117 104 104 ILE ILE A . n A 1 118 ASN 118 105 105 ASN ASN A . n A 1 119 THR 119 106 106 THR THR A . n A 1 120 GLN 120 107 107 GLN GLN A . n A 1 121 VAL 121 108 108 VAL VAL A . n A 1 122 LEU 122 109 109 LEU LEU A . n A 1 123 THR 123 110 110 THR THR A . n A 1 124 THR 124 111 111 THR THR A . n A 1 125 SER 125 112 112 SER SER A . n A 1 126 GLY 126 113 113 GLY GLY A . n A 1 127 THR 127 114 114 THR THR A . n A 1 128 THR 128 115 115 THR THR A . n A 1 129 GLU 129 116 116 GLU GLU A . n A 1 130 ALA 130 117 117 ALA ALA A . n A 1 131 ASN 131 118 118 ASN ASN A . n A 1 132 ALA 132 119 119 ALA ALA A . n A 1 133 TRP 133 120 120 TRP TRP A . n A 1 134 LYS 134 121 121 LYS LYS A . n A 1 135 SER 135 122 122 SER SER A . n A 1 136 THR 136 123 123 THR THR A . n A 1 137 LEU 137 124 124 LEU LEU A . n A 1 138 VAL 138 125 125 VAL VAL A . n A 1 139 GLY 139 126 126 GLY GLY A . n A 1 140 HIS 140 127 127 HIS HIS A . n A 1 141 ASP 141 128 128 ASP ASP A . n A 1 142 THR 142 129 129 THR THR A . n A 1 143 PHE 143 130 130 PHE PHE A . n A 1 144 THR 144 131 131 THR THR A . n A 1 145 LYS 145 132 132 LYS LYS A . n A 1 146 VAL 146 133 133 VAL VAL A . n A 1 147 LYS 147 134 134 LYS LYS A . n A 1 148 PRO 148 135 ? ? ? A . n A 1 149 SER 149 136 ? ? ? A . n A 1 150 ALA 150 137 ? ? ? A . n A 1 151 ALA 151 138 ? ? ? A . n A 1 152 SER 152 139 ? ? ? A . n A 1 153 ILE 153 140 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE 1 700 700 1PE 1PE A . C 3 HOH 1 141 141 HOH HOH A . C 3 HOH 2 142 142 HOH HOH A . C 3 HOH 3 143 143 HOH HOH A . C 3 HOH 4 144 144 HOH HOH A . C 3 HOH 5 145 145 HOH HOH A . C 3 HOH 6 146 146 HOH HOH A . C 3 HOH 7 147 147 HOH HOH A . C 3 HOH 8 148 148 HOH HOH A . C 3 HOH 9 149 149 HOH HOH A . C 3 HOH 10 150 150 HOH HOH A . C 3 HOH 11 151 151 HOH HOH A . C 3 HOH 12 152 152 HOH HOH A . C 3 HOH 13 153 153 HOH HOH A . C 3 HOH 14 154 154 HOH HOH A . C 3 HOH 15 155 155 HOH HOH A . C 3 HOH 16 156 156 HOH HOH A . C 3 HOH 17 157 157 HOH HOH A . C 3 HOH 18 158 158 HOH HOH A . C 3 HOH 19 159 159 HOH HOH A . C 3 HOH 20 160 160 HOH HOH A . C 3 HOH 21 161 161 HOH HOH A . C 3 HOH 22 162 162 HOH HOH A . C 3 HOH 23 163 163 HOH HOH A . C 3 HOH 24 164 164 HOH HOH A . C 3 HOH 25 165 165 HOH HOH A . C 3 HOH 26 166 166 HOH HOH A . C 3 HOH 27 167 167 HOH HOH A . C 3 HOH 28 168 168 HOH HOH A . C 3 HOH 29 169 169 HOH HOH A . C 3 HOH 30 170 170 HOH HOH A . C 3 HOH 31 171 171 HOH HOH A . C 3 HOH 32 172 172 HOH HOH A . C 3 HOH 33 173 173 HOH HOH A . C 3 HOH 34 174 174 HOH HOH A . C 3 HOH 35 175 175 HOH HOH A . C 3 HOH 36 176 176 HOH HOH A . C 3 HOH 37 177 177 HOH HOH A . C 3 HOH 38 178 178 HOH HOH A . C 3 HOH 39 179 179 HOH HOH A . C 3 HOH 40 180 180 HOH HOH A . C 3 HOH 41 181 181 HOH HOH A . C 3 HOH 42 182 182 HOH HOH A . C 3 HOH 43 183 183 HOH HOH A . C 3 HOH 44 184 184 HOH HOH A . C 3 HOH 45 185 185 HOH HOH A . C 3 HOH 46 186 186 HOH HOH A . C 3 HOH 47 187 187 HOH HOH A . C 3 HOH 48 188 188 HOH HOH A . C 3 HOH 49 189 189 HOH HOH A . C 3 HOH 50 190 190 HOH HOH A . C 3 HOH 51 191 191 HOH HOH A . C 3 HOH 52 192 192 HOH HOH A . C 3 HOH 53 193 193 HOH HOH A . C 3 HOH 54 194 194 HOH HOH A . C 3 HOH 55 195 195 HOH HOH A . C 3 HOH 56 196 196 HOH HOH A . C 3 HOH 57 197 197 HOH HOH A . C 3 HOH 58 198 198 HOH HOH A . C 3 HOH 59 199 199 HOH HOH A . C 3 HOH 60 200 200 HOH HOH A . C 3 HOH 61 201 201 HOH HOH A . C 3 HOH 62 202 202 HOH HOH A . C 3 HOH 63 203 203 HOH HOH A . C 3 HOH 64 204 204 HOH HOH A . C 3 HOH 65 205 205 HOH HOH A . C 3 HOH 66 206 206 HOH HOH A . C 3 HOH 67 207 207 HOH HOH A . C 3 HOH 68 208 208 HOH HOH A . C 3 HOH 69 209 209 HOH HOH A . C 3 HOH 70 210 210 HOH HOH A . C 3 HOH 71 211 211 HOH HOH A . C 3 HOH 72 212 212 HOH HOH A . C 3 HOH 73 213 213 HOH HOH A . C 3 HOH 74 214 214 HOH HOH A . C 3 HOH 75 215 215 HOH HOH A . C 3 HOH 76 216 216 HOH HOH A . C 3 HOH 77 217 217 HOH HOH A . C 3 HOH 78 218 218 HOH HOH A . C 3 HOH 79 219 219 HOH HOH A . C 3 HOH 80 220 220 HOH HOH A . C 3 HOH 81 221 221 HOH HOH A . C 3 HOH 82 222 222 HOH HOH A . C 3 HOH 83 223 223 HOH HOH A . C 3 HOH 84 224 224 HOH HOH A . C 3 HOH 85 225 225 HOH HOH A . C 3 HOH 86 226 226 HOH HOH A . C 3 HOH 87 227 227 HOH HOH A . C 3 HOH 88 228 228 HOH HOH A . C 3 HOH 89 229 229 HOH HOH A . C 3 HOH 90 230 230 HOH HOH A . C 3 HOH 91 231 231 HOH HOH A . C 3 HOH 92 232 232 HOH HOH A . C 3 HOH 93 233 233 HOH HOH A . C 3 HOH 94 234 234 HOH HOH A . C 3 HOH 95 235 235 HOH HOH A . C 3 HOH 96 236 236 HOH HOH A . C 3 HOH 97 237 237 HOH HOH A . C 3 HOH 98 238 238 HOH HOH A . C 3 HOH 99 239 239 HOH HOH A . C 3 HOH 100 240 240 HOH HOH A . C 3 HOH 101 241 241 HOH HOH A . C 3 HOH 102 242 242 HOH HOH A . C 3 HOH 103 243 243 HOH HOH A . C 3 HOH 104 244 244 HOH HOH A . C 3 HOH 105 245 245 HOH HOH A . C 3 HOH 106 246 246 HOH HOH A . C 3 HOH 107 247 247 HOH HOH A . C 3 HOH 108 248 248 HOH HOH A . C 3 HOH 109 249 249 HOH HOH A . C 3 HOH 110 250 250 HOH HOH A . C 3 HOH 111 251 251 HOH HOH A . C 3 HOH 112 252 252 HOH HOH A . C 3 HOH 113 253 253 HOH HOH A . C 3 HOH 114 254 254 HOH HOH A . C 3 HOH 115 255 255 HOH HOH A . C 3 HOH 116 256 256 HOH HOH A . C 3 HOH 117 257 257 HOH HOH A . C 3 HOH 118 258 258 HOH HOH A . C 3 HOH 119 259 259 HOH HOH A . C 3 HOH 120 260 260 HOH HOH A . C 3 HOH 121 261 261 HOH HOH A . C 3 HOH 122 262 262 HOH HOH A . C 3 HOH 123 263 263 HOH HOH A . C 3 HOH 124 264 264 HOH HOH A . C 3 HOH 125 265 265 HOH HOH A . C 3 HOH 126 266 266 HOH HOH A . C 3 HOH 127 267 267 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2,3,4 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 11690 ? 2 MORE -71 ? 2 'SSA (A^2)' 18510 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0.0000000000 -1.0000000000 0.0000000000 -57.4690000000 -1.0000000000 0.0000000000 0.0000000000 -57.4690000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1.0000000000 0.0000000000 0.0000000000 -57.4690000000 0.0000000000 -1.0000000000 0.0000000000 -57.4690000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 15_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 145 ? C HOH . 2 1 A HOH 165 ? C HOH . 3 1 A HOH 177 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' diffrn 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' pdbx_struct_special_symmetry 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -13.9885 _pdbx_refine_tls.origin_y -24.7309 _pdbx_refine_tls.origin_z -2.5502 _pdbx_refine_tls.T[1][1] -0.0293 _pdbx_refine_tls.T[2][2] -0.0018 _pdbx_refine_tls.T[3][3] -0.0214 _pdbx_refine_tls.T[1][2] 0.0121 _pdbx_refine_tls.T[1][3] -0.0056 _pdbx_refine_tls.T[2][3] -0.0123 _pdbx_refine_tls.L[1][1] 0.8605 _pdbx_refine_tls.L[2][2] 0.6121 _pdbx_refine_tls.L[3][3] 0.5624 _pdbx_refine_tls.L[1][2] -0.0757 _pdbx_refine_tls.L[1][3] 0.0583 _pdbx_refine_tls.L[2][3] 0.0734 _pdbx_refine_tls.S[1][1] 0.0441 _pdbx_refine_tls.S[2][2] 0.0715 _pdbx_refine_tls.S[3][3] -0.1156 _pdbx_refine_tls.S[1][2] -0.0103 _pdbx_refine_tls.S[1][3] -0.0773 _pdbx_refine_tls.S[2][3] -0.0450 _pdbx_refine_tls.S[2][1] -0.0787 _pdbx_refine_tls.S[3][1] -0.0078 _pdbx_refine_tls.S[3][2] 0.1367 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 12 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 134 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 101 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -119.72 _pdbx_validate_torsion.psi 55.25 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A SER -11 ? A SER 2 3 1 Y 1 A GLY -10 ? A GLY 3 4 1 Y 1 A SER -9 ? A SER 4 5 1 Y 1 A HIS -8 ? A HIS 5 6 1 Y 1 A HIS -7 ? A HIS 6 7 1 Y 1 A HIS -6 ? A HIS 7 8 1 Y 1 A HIS -5 ? A HIS 8 9 1 Y 1 A HIS -4 ? A HIS 9 10 1 Y 1 A HIS -3 ? A HIS 10 11 1 Y 1 A SER -2 ? A SER 11 12 1 Y 1 A SER -1 ? A SER 12 13 1 Y 1 A GLY 0 ? A GLY 13 14 1 Y 1 A ILE 1 ? A ILE 14 15 1 Y 1 A GLU 2 ? A GLU 15 16 1 Y 1 A GLY 3 ? A GLY 16 17 1 Y 1 A ARG 4 ? A ARG 17 18 1 Y 1 A GLY 5 ? A GLY 18 19 1 Y 1 A ARG 6 ? A ARG 19 20 1 Y 1 A LEU 7 ? A LEU 20 21 1 Y 1 A ILE 8 ? A ILE 21 22 1 Y 1 A LYS 9 ? A LYS 22 23 1 Y 1 A HIS 10 ? A HIS 23 24 1 Y 1 A MET 11 ? A MET 24 25 1 Y 1 A PRO 135 ? A PRO 148 26 1 Y 1 A SER 136 ? A SER 149 27 1 Y 1 A ALA 137 ? A ALA 150 28 1 Y 1 A ALA 138 ? A ALA 151 29 1 Y 1 A SER 139 ? A SER 152 30 1 Y 1 A ILE 140 ? A ILE 153 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1PE OH2 O N N 1 1PE C12 C N N 2 1PE C22 C N N 3 1PE OH3 O N N 4 1PE C13 C N N 5 1PE C23 C N N 6 1PE OH4 O N N 7 1PE C14 C N N 8 1PE C24 C N N 9 1PE OH5 O N N 10 1PE C15 C N N 11 1PE C25 C N N 12 1PE OH6 O N N 13 1PE C16 C N N 14 1PE C26 C N N 15 1PE OH7 O N N 16 1PE HO2 H N N 17 1PE H121 H N N 18 1PE H122 H N N 19 1PE H221 H N N 20 1PE H222 H N N 21 1PE H131 H N N 22 1PE H132 H N N 23 1PE H231 H N N 24 1PE H232 H N N 25 1PE H141 H N N 26 1PE H142 H N N 27 1PE H241 H N N 28 1PE H242 H N N 29 1PE H151 H N N 30 1PE H152 H N N 31 1PE H251 H N N 32 1PE H252 H N N 33 1PE H161 H N N 34 1PE H162 H N N 35 1PE H261 H N N 36 1PE H262 H N N 37 1PE HO7 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PRO N N N N 297 PRO CA C N S 298 PRO C C N N 299 PRO O O N N 300 PRO CB C N N 301 PRO CG C N N 302 PRO CD C N N 303 PRO OXT O N N 304 PRO H H N N 305 PRO HA H N N 306 PRO HB2 H N N 307 PRO HB3 H N N 308 PRO HG2 H N N 309 PRO HG3 H N N 310 PRO HD2 H N N 311 PRO HD3 H N N 312 PRO HXT H N N 313 SER N N N N 314 SER CA C N S 315 SER C C N N 316 SER O O N N 317 SER CB C N N 318 SER OG O N N 319 SER OXT O N N 320 SER H H N N 321 SER H2 H N N 322 SER HA H N N 323 SER HB2 H N N 324 SER HB3 H N N 325 SER HG H N N 326 SER HXT H N N 327 THR N N N N 328 THR CA C N S 329 THR C C N N 330 THR O O N N 331 THR CB C N R 332 THR OG1 O N N 333 THR CG2 C N N 334 THR OXT O N N 335 THR H H N N 336 THR H2 H N N 337 THR HA H N N 338 THR HB H N N 339 THR HG1 H N N 340 THR HG21 H N N 341 THR HG22 H N N 342 THR HG23 H N N 343 THR HXT H N N 344 TRP N N N N 345 TRP CA C N S 346 TRP C C N N 347 TRP O O N N 348 TRP CB C N N 349 TRP CG C Y N 350 TRP CD1 C Y N 351 TRP CD2 C Y N 352 TRP NE1 N Y N 353 TRP CE2 C Y N 354 TRP CE3 C Y N 355 TRP CZ2 C Y N 356 TRP CZ3 C Y N 357 TRP CH2 C Y N 358 TRP OXT O N N 359 TRP H H N N 360 TRP H2 H N N 361 TRP HA H N N 362 TRP HB2 H N N 363 TRP HB3 H N N 364 TRP HD1 H N N 365 TRP HE1 H N N 366 TRP HE3 H N N 367 TRP HZ2 H N N 368 TRP HZ3 H N N 369 TRP HH2 H N N 370 TRP HXT H N N 371 TYR N N N N 372 TYR CA C N S 373 TYR C C N N 374 TYR O O N N 375 TYR CB C N N 376 TYR CG C Y N 377 TYR CD1 C Y N 378 TYR CD2 C Y N 379 TYR CE1 C Y N 380 TYR CE2 C Y N 381 TYR CZ C Y N 382 TYR OH O N N 383 TYR OXT O N N 384 TYR H H N N 385 TYR H2 H N N 386 TYR HA H N N 387 TYR HB2 H N N 388 TYR HB3 H N N 389 TYR HD1 H N N 390 TYR HD2 H N N 391 TYR HE1 H N N 392 TYR HE2 H N N 393 TYR HH H N N 394 TYR HXT H N N 395 VAL N N N N 396 VAL CA C N S 397 VAL C C N N 398 VAL O O N N 399 VAL CB C N N 400 VAL CG1 C N N 401 VAL CG2 C N N 402 VAL OXT O N N 403 VAL H H N N 404 VAL H2 H N N 405 VAL HA H N N 406 VAL HB H N N 407 VAL HG11 H N N 408 VAL HG12 H N N 409 VAL HG13 H N N 410 VAL HG21 H N N 411 VAL HG22 H N N 412 VAL HG23 H N N 413 VAL HXT H N N 414 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1PE OH2 C12 sing N N 1 1PE OH2 HO2 sing N N 2 1PE C12 C22 sing N N 3 1PE C12 H121 sing N N 4 1PE C12 H122 sing N N 5 1PE C22 OH3 sing N N 6 1PE C22 H221 sing N N 7 1PE C22 H222 sing N N 8 1PE OH3 C23 sing N N 9 1PE C13 C23 sing N N 10 1PE C13 OH4 sing N N 11 1PE C13 H131 sing N N 12 1PE C13 H132 sing N N 13 1PE C23 H231 sing N N 14 1PE C23 H232 sing N N 15 1PE OH4 C24 sing N N 16 1PE C14 C24 sing N N 17 1PE C14 OH5 sing N N 18 1PE C14 H141 sing N N 19 1PE C14 H142 sing N N 20 1PE C24 H241 sing N N 21 1PE C24 H242 sing N N 22 1PE OH5 C25 sing N N 23 1PE C15 C25 sing N N 24 1PE C15 OH6 sing N N 25 1PE C15 H151 sing N N 26 1PE C15 H152 sing N N 27 1PE C25 H251 sing N N 28 1PE C25 H252 sing N N 29 1PE OH6 C26 sing N N 30 1PE C16 C26 sing N N 31 1PE C16 OH7 sing N N 32 1PE C16 H161 sing N N 33 1PE C16 H162 sing N N 34 1PE C26 H261 sing N N 35 1PE C26 H262 sing N N 36 1PE OH7 HO7 sing N N 37 ALA N CA sing N N 38 ALA N H sing N N 39 ALA N H2 sing N N 40 ALA CA C sing N N 41 ALA CA CB sing N N 42 ALA CA HA sing N N 43 ALA C O doub N N 44 ALA C OXT sing N N 45 ALA CB HB1 sing N N 46 ALA CB HB2 sing N N 47 ALA CB HB3 sing N N 48 ALA OXT HXT sing N N 49 ARG N CA sing N N 50 ARG N H sing N N 51 ARG N H2 sing N N 52 ARG CA C sing N N 53 ARG CA CB sing N N 54 ARG CA HA sing N N 55 ARG C O doub N N 56 ARG C OXT sing N N 57 ARG CB CG sing N N 58 ARG CB HB2 sing N N 59 ARG CB HB3 sing N N 60 ARG CG CD sing N N 61 ARG CG HG2 sing N N 62 ARG CG HG3 sing N N 63 ARG CD NE sing N N 64 ARG CD HD2 sing N N 65 ARG CD HD3 sing N N 66 ARG NE CZ sing N N 67 ARG NE HE sing N N 68 ARG CZ NH1 sing N N 69 ARG CZ NH2 doub N N 70 ARG NH1 HH11 sing N N 71 ARG NH1 HH12 sing N N 72 ARG NH2 HH21 sing N N 73 ARG NH2 HH22 sing N N 74 ARG OXT HXT sing N N 75 ASN N CA sing N N 76 ASN N H sing N N 77 ASN N H2 sing N N 78 ASN CA C sing N N 79 ASN CA CB sing N N 80 ASN CA HA sing N N 81 ASN C O doub N N 82 ASN C OXT sing N N 83 ASN CB CG sing N N 84 ASN CB HB2 sing N N 85 ASN CB HB3 sing N N 86 ASN CG OD1 doub N N 87 ASN CG ND2 sing N N 88 ASN ND2 HD21 sing N N 89 ASN ND2 HD22 sing N N 90 ASN OXT HXT sing N N 91 ASP N CA sing N N 92 ASP N H sing N N 93 ASP N H2 sing N N 94 ASP CA C sing N N 95 ASP CA CB sing N N 96 ASP CA HA sing N N 97 ASP C O doub N N 98 ASP C OXT sing N N 99 ASP CB CG sing N N 100 ASP CB HB2 sing N N 101 ASP CB HB3 sing N N 102 ASP CG OD1 doub N N 103 ASP CG OD2 sing N N 104 ASP OD2 HD2 sing N N 105 ASP OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TRP N CA sing N N 330 TRP N H sing N N 331 TRP N H2 sing N N 332 TRP CA C sing N N 333 TRP CA CB sing N N 334 TRP CA HA sing N N 335 TRP C O doub N N 336 TRP C OXT sing N N 337 TRP CB CG sing N N 338 TRP CB HB2 sing N N 339 TRP CB HB3 sing N N 340 TRP CG CD1 doub Y N 341 TRP CG CD2 sing Y N 342 TRP CD1 NE1 sing Y N 343 TRP CD1 HD1 sing N N 344 TRP CD2 CE2 doub Y N 345 TRP CD2 CE3 sing Y N 346 TRP NE1 CE2 sing Y N 347 TRP NE1 HE1 sing N N 348 TRP CE2 CZ2 sing Y N 349 TRP CE3 CZ3 doub Y N 350 TRP CE3 HE3 sing N N 351 TRP CZ2 CH2 doub Y N 352 TRP CZ2 HZ2 sing N N 353 TRP CZ3 CH2 sing Y N 354 TRP CZ3 HZ3 sing N N 355 TRP CH2 HH2 sing N N 356 TRP OXT HXT sing N N 357 TYR N CA sing N N 358 TYR N H sing N N 359 TYR N H2 sing N N 360 TYR CA C sing N N 361 TYR CA CB sing N N 362 TYR CA HA sing N N 363 TYR C O doub N N 364 TYR C OXT sing N N 365 TYR CB CG sing N N 366 TYR CB HB2 sing N N 367 TYR CB HB3 sing N N 368 TYR CG CD1 doub Y N 369 TYR CG CD2 sing Y N 370 TYR CD1 CE1 sing Y N 371 TYR CD1 HD1 sing N N 372 TYR CD2 CE2 doub Y N 373 TYR CD2 HD2 sing N N 374 TYR CE1 CZ doub Y N 375 TYR CE1 HE1 sing N N 376 TYR CE2 CZ sing Y N 377 TYR CE2 HE2 sing N N 378 TYR CZ OH sing N N 379 TYR OH HH sing N N 380 TYR OXT HXT sing N N 381 VAL N CA sing N N 382 VAL N H sing N N 383 VAL N H2 sing N N 384 VAL CA C sing N N 385 VAL CA CB sing N N 386 VAL CA HA sing N N 387 VAL C O doub N N 388 VAL C OXT sing N N 389 VAL CB CG1 sing N N 390 VAL CB CG2 sing N N 391 VAL CB HB sing N N 392 VAL CG1 HG11 sing N N 393 VAL CG1 HG12 sing N N 394 VAL CG1 HG13 sing N N 395 VAL CG2 HG21 sing N N 396 VAL CG2 HG22 sing N N 397 VAL CG2 HG23 sing N N 398 VAL OXT HXT sing N N 399 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PENTAETHYLENE GLYCOL' 1PE 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3RDM _pdbx_initial_refinement_model.details 'PDB ENTRY 3RDM' #