HEADER SIGNALING PROTEIN 04-APR-11 3REF TITLE CRYSTAL STRUCTURE OF EHRHO1 BOUND TO GDP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-LIKE SMALL GTPASE; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 1-191; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 5759; SOURCE 4 STRAIN: HM1:IMSS; SOURCE 5 GENE: EHRHO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLIC-HIS KEYWDS CYTOSKELETON, NUCLEOTIDE-BINDING, GTP-BINDING, SIGNALING PROTEIN, KEYWDS 2 LIPOPROTEIN, PRENYLATION EXPDTA X-RAY DIFFRACTION AUTHOR D.E.BOSCH,C.QIU,D.P.SIDEROVSKI REVDAT 3 13-SEP-23 3REF 1 REMARK SEQADV LINK REVDAT 2 14-MAR-12 3REF 1 JRNL REVDAT 1 28-SEP-11 3REF 0 JRNL AUTH D.E.BOSCH,E.S.WITTCHEN,C.QIU,K.BURRIDGE,D.P.SIDEROVSKI JRNL TITL UNIQUE STRUCTURAL AND NUCLEOTIDE EXCHANGE FEATURES OF THE JRNL TITL 2 RHO1 GTPASE OF ENTAMOEBA HISTOLYTICA. JRNL REF J.BIOL.CHEM. V. 286 39236 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21930699 JRNL DOI 10.1074/JBC.M111.253898 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3267 - 4.1965 1.00 2726 170 0.1412 0.1536 REMARK 3 2 4.1965 - 3.3325 1.00 2635 142 0.1411 0.1663 REMARK 3 3 3.3325 - 2.9118 1.00 2586 146 0.1733 0.2467 REMARK 3 4 2.9118 - 2.6458 1.00 2562 132 0.1723 0.2205 REMARK 3 5 2.6458 - 2.4562 1.00 2569 146 0.1632 0.2075 REMARK 3 6 2.4562 - 2.3115 1.00 2551 128 0.1533 0.2424 REMARK 3 7 2.3115 - 2.1958 0.99 2542 132 0.1514 0.2048 REMARK 3 8 2.1958 - 2.1002 1.00 2539 123 0.1554 0.2303 REMARK 3 9 2.1002 - 2.0194 1.00 2545 124 0.1640 0.2257 REMARK 3 10 2.0194 - 1.9500 0.99 2537 123 0.1897 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07860 REMARK 3 B22 (A**2) : 0.12660 REMARK 3 B33 (A**2) : -0.04800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2881 REMARK 3 ANGLE : 1.260 3909 REMARK 3 CHIRALITY : 0.088 444 REMARK 3 PLANARITY : 0.006 484 REMARK 3 DIHEDRAL : 16.000 1041 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 15:48) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3863 4.2247 3.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.1492 REMARK 3 T33: 0.1953 T12: -0.0379 REMARK 3 T13: 0.0715 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.3348 L22: 0.5017 REMARK 3 L33: 3.0346 L12: 0.4950 REMARK 3 L13: -0.7047 L23: -1.1364 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: -0.1019 S13: 0.4130 REMARK 3 S21: 0.4002 S22: 0.0967 S23: -0.1752 REMARK 3 S31: -0.7379 S32: 0.2076 S33: -0.2980 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 49:64) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2665 1.9317 7.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.4164 REMARK 3 T33: 0.3700 T12: -0.1374 REMARK 3 T13: 0.0239 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 2.8053 L22: 4.9021 REMARK 3 L33: 7.0721 L12: -1.2879 REMARK 3 L13: 0.8853 L23: -0.5932 REMARK 3 S TENSOR REMARK 3 S11: 0.5460 S12: -0.2003 S13: 0.5258 REMARK 3 S21: 0.1535 S22: -0.2198 S23: -0.6221 REMARK 3 S31: -0.3994 S32: 1.3435 S33: -0.2898 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 65:92) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4793 2.3895 8.0432 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.1985 REMARK 3 T33: 0.2137 T12: -0.0220 REMARK 3 T13: 0.0412 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 1.2211 L22: 0.7531 REMARK 3 L33: 2.9399 L12: 0.1401 REMARK 3 L13: -1.1433 L23: 0.9548 REMARK 3 S TENSOR REMARK 3 S11: 0.2531 S12: -0.2191 S13: 0.1753 REMARK 3 S21: 0.1481 S22: -0.0219 S23: 0.1149 REMARK 3 S31: -0.6309 S32: 0.2525 S33: -0.2090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 93:144) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0619 -8.1515 -0.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1854 REMARK 3 T33: 0.1530 T12: 0.0128 REMARK 3 T13: -0.0094 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.3896 L22: 0.8079 REMARK 3 L33: 1.8144 L12: 0.2906 REMARK 3 L13: -0.4253 L23: -0.4860 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0798 S13: -0.0795 REMARK 3 S21: -0.0192 S22: 0.0479 S23: 0.1571 REMARK 3 S31: -0.0512 S32: -0.2439 S33: -0.0430 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 145:187) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5097 -2.5077 -7.8591 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.2348 REMARK 3 T33: 0.1693 T12: 0.0787 REMARK 3 T13: -0.0229 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.2540 L22: 1.4221 REMARK 3 L33: 1.6244 L12: -0.3243 REMARK 3 L13: -1.3061 L23: 0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.1578 S12: 0.3882 S13: 0.0269 REMARK 3 S21: -0.3174 S22: -0.0324 S23: 0.0766 REMARK 3 S31: -0.3050 S32: -0.3094 S33: -0.0957 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 15:80) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7044 -5.9967 -33.3799 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.2297 REMARK 3 T33: 0.2086 T12: -0.0189 REMARK 3 T13: -0.0273 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3269 L22: 2.9830 REMARK 3 L33: 2.6664 L12: 0.3703 REMARK 3 L13: -0.3088 L23: -0.5259 REMARK 3 S TENSOR REMARK 3 S11: -0.0939 S12: 0.1096 S13: -0.1605 REMARK 3 S21: -0.1595 S22: 0.1266 S23: 0.4540 REMARK 3 S31: 0.1453 S32: -0.5068 S33: -0.0461 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 81:94) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1189 -2.1933 -41.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.2147 REMARK 3 T33: 0.2084 T12: 0.0019 REMARK 3 T13: 0.0018 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.3708 L22: 0.8392 REMARK 3 L33: 0.1832 L12: 0.7022 REMARK 3 L13: -0.3962 L23: 0.0544 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.3481 S13: -0.0607 REMARK 3 S21: -0.3293 S22: -0.0062 S23: -0.0880 REMARK 3 S31: 0.1506 S32: 0.0533 S33: 0.0496 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 95:140) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8197 3.4654 -28.4191 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1357 REMARK 3 T33: 0.1893 T12: -0.0259 REMARK 3 T13: -0.0272 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5894 L22: 0.2146 REMARK 3 L33: 1.1856 L12: -0.0274 REMARK 3 L13: -0.4793 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: -0.0410 S13: 0.1892 REMARK 3 S21: 0.0951 S22: -0.0907 S23: -0.0396 REMARK 3 S31: -0.3886 S32: 0.1040 S33: 0.0616 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 141:179) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1300 2.9919 -19.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.2028 REMARK 3 T33: 0.1846 T12: -0.0118 REMARK 3 T13: -0.0051 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.5478 L22: 1.5945 REMARK 3 L33: 2.7232 L12: 0.9159 REMARK 3 L13: -0.8031 L23: 0.1882 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: -0.2332 S13: 0.2677 REMARK 3 S21: 0.3189 S22: -0.0498 S23: 0.0663 REMARK 3 S31: -0.3170 S32: 0.0824 S33: -0.0699 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 180:194) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4455 8.8453 -29.5332 REMARK 3 T TENSOR REMARK 3 T11: 0.1674 T22: 0.1845 REMARK 3 T33: 0.2235 T12: 0.1371 REMARK 3 T13: -0.0216 T23: 0.0719 REMARK 3 L TENSOR REMARK 3 L11: 0.2650 L22: 0.8861 REMARK 3 L33: 0.3521 L12: -0.0706 REMARK 3 L13: -0.0403 L23: 0.0558 REMARK 3 S TENSOR REMARK 3 S11: -0.3163 S12: -0.0764 S13: 0.0729 REMARK 3 S21: 0.0429 S22: 0.2907 S23: -0.3014 REMARK 3 S31: -0.0601 S32: -0.0202 S33: 0.0650 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3REF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000064828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : CUSTOM REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.324 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.18700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DPF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EHRHO1 AT 15 MG/ML IN CRYSTALLIZATION REMARK 280 BUFFER (50 MM TRIS PH 8.0, 250 MM NACL, 2.5% (V/V) GLYCEROL, 5 REMARK 280 MM DTT, 50 MICROM GDP, 1 MM MAGNESIUM CHLORIDE) WAS MIXED 1:1 REMARK 280 WITH AND EQUILIBRATED AGAINST CRYSTALLIZATION SOLUTION (1.5 M REMARK 280 AMMONIUM SULFATE, 100 MM TRIS PH 8.0), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.14250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.14250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ALA B 3 REMARK 465 PHE B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 MET B 7 REMARK 465 ASN B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 MET A 7 REMARK 465 ASN A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 SER A 185 REMARK 465 ASN A 186 REMARK 465 LYS A 187 REMARK 465 PRO A 188 REMARK 465 VAL A 189 REMARK 465 PRO A 190 REMARK 465 LYS A 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 16 -110.28 61.31 REMARK 500 ALA B 48 -70.42 -109.59 REMARK 500 LYS B 64 -112.74 60.01 REMARK 500 LYS B 113 -53.89 -120.85 REMARK 500 ILE B 122 59.78 -149.26 REMARK 500 SER B 141 -164.76 -113.37 REMARK 500 ASP B 142 51.17 -119.37 REMARK 500 ASN A 16 -64.25 -121.31 REMARK 500 ASP A 28 152.11 -49.38 REMARK 500 TYR A 63 -104.80 -128.42 REMARK 500 LYS A 64 -81.93 -45.81 REMARK 500 ASN A 65 23.69 -143.13 REMARK 500 GLU A 79 -141.36 53.57 REMARK 500 LYS A 113 -52.45 -124.05 REMARK 500 ILE A 122 64.61 -150.31 REMARK 500 SER A 141 -160.97 -114.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 550 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 34 OG1 REMARK 620 2 THR B 52 O 88.0 REMARK 620 3 HOH B 220 O 83.5 90.2 REMARK 620 4 HOH B 221 O 173.7 85.7 95.7 REMARK 620 5 HOH B 222 O 88.6 86.1 171.4 91.8 REMARK 620 6 GDP B 274 O3B 93.8 176.2 93.4 92.5 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 192 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 34 OG1 REMARK 620 2 THR A 52 O 90.8 REMARK 620 3 HOH A 205 O 82.0 91.7 REMARK 620 4 HOH A 207 O 82.8 91.3 164.5 REMARK 620 5 HOH A 256 O 176.7 91.8 100.0 95.2 REMARK 620 6 GDP A 274 O3B 83.7 173.1 83.4 92.2 93.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3REG RELATED DB: PDB REMARK 900 RELATED ID: 1FTN RELATED DB: PDB REMARK 900 HUMAN RHOA BOUND TO GDP DBREF 3REF B 1 191 UNP Q95TD4 Q95TD4_ENTHI 1 191 DBREF 3REF A 1 191 UNP Q95TD4 Q95TD4_ENTHI 1 191 SEQADV 3REF SER B -2 UNP Q95TD4 EXPRESSION TAG SEQADV 3REF ASN B -1 UNP Q95TD4 EXPRESSION TAG SEQADV 3REF ALA B 0 UNP Q95TD4 EXPRESSION TAG SEQADV 3REF SER A -2 UNP Q95TD4 EXPRESSION TAG SEQADV 3REF ASN A -1 UNP Q95TD4 EXPRESSION TAG SEQADV 3REF ALA A 0 UNP Q95TD4 EXPRESSION TAG SEQRES 1 B 194 SER ASN ALA MET LEU ALA PHE SER ASP MET ASN THR GLY SEQRES 2 B 194 ALA GLY LYS ILE GLU ASN GLY LYS LYS ALA LEU LYS ILE SEQRES 3 B 194 VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS THR CYS LEU SEQRES 4 B 194 LEU LEU ALA PHE SER LYS GLY GLU ILE PRO THR ALA TYR SEQRES 5 B 194 VAL PRO THR VAL PHE GLU ASN PHE SER HIS VAL MET LYS SEQRES 6 B 194 TYR LYS ASN GLU GLU PHE ILE LEU HIS LEU TRP ASP THR SEQRES 7 B 194 ALA GLY GLN GLU GLU TYR ASP ARG LEU ARG PRO LEU SER SEQRES 8 B 194 TYR ALA ASP SER ASP VAL VAL LEU LEU CYS PHE ALA VAL SEQRES 9 B 194 ASN ASN ARG THR SER PHE ASP ASN ILE SER THR LYS TRP SEQRES 10 B 194 GLU PRO GLU ILE LYS HIS TYR ILE ASP THR ALA LYS THR SEQRES 11 B 194 VAL LEU VAL GLY LEU LYS VAL ASP LEU ARG LYS ASP GLY SEQRES 12 B 194 SER ASP ASP VAL THR LYS GLN GLU GLY ASP ASP LEU CYS SEQRES 13 B 194 GLN LYS LEU GLY CYS VAL ALA TYR ILE GLU ALA SER SER SEQRES 14 B 194 VAL ALA LYS ILE GLY LEU ASN GLU VAL PHE GLU LYS SER SEQRES 15 B 194 VAL ASP CYS ILE PHE SER ASN LYS PRO VAL PRO LYS SEQRES 1 A 194 SER ASN ALA MET LEU ALA PHE SER ASP MET ASN THR GLY SEQRES 2 A 194 ALA GLY LYS ILE GLU ASN GLY LYS LYS ALA LEU LYS ILE SEQRES 3 A 194 VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS THR CYS LEU SEQRES 4 A 194 LEU LEU ALA PHE SER LYS GLY GLU ILE PRO THR ALA TYR SEQRES 5 A 194 VAL PRO THR VAL PHE GLU ASN PHE SER HIS VAL MET LYS SEQRES 6 A 194 TYR LYS ASN GLU GLU PHE ILE LEU HIS LEU TRP ASP THR SEQRES 7 A 194 ALA GLY GLN GLU GLU TYR ASP ARG LEU ARG PRO LEU SER SEQRES 8 A 194 TYR ALA ASP SER ASP VAL VAL LEU LEU CYS PHE ALA VAL SEQRES 9 A 194 ASN ASN ARG THR SER PHE ASP ASN ILE SER THR LYS TRP SEQRES 10 A 194 GLU PRO GLU ILE LYS HIS TYR ILE ASP THR ALA LYS THR SEQRES 11 A 194 VAL LEU VAL GLY LEU LYS VAL ASP LEU ARG LYS ASP GLY SEQRES 12 A 194 SER ASP ASP VAL THR LYS GLN GLU GLY ASP ASP LEU CYS SEQRES 13 A 194 GLN LYS LEU GLY CYS VAL ALA TYR ILE GLU ALA SER SER SEQRES 14 A 194 VAL ALA LYS ILE GLY LEU ASN GLU VAL PHE GLU LYS SER SEQRES 15 A 194 VAL ASP CYS ILE PHE SER ASN LYS PRO VAL PRO LYS HET GDP B 274 28 HET MG B 550 1 HET SO4 B 192 5 HET GDP A 274 28 HET MG A 192 1 HET SO4 A 193 5 HET SO4 A 194 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *213(H2 O) HELIX 1 1 GLY B 32 GLY B 43 1 12 HELIX 2 2 GLN B 78 ASP B 82 5 5 HELIX 3 3 LEU B 84 ALA B 90 5 7 HELIX 4 4 ASN B 103 LYS B 113 1 11 HELIX 5 5 LYS B 113 ILE B 122 1 10 HELIX 6 6 LYS B 133 ARG B 137 5 5 HELIX 7 7 THR B 145 GLY B 157 1 13 HELIX 8 8 GLY B 171 CYS B 182 1 12 HELIX 9 9 GLY A 32 GLY A 43 1 12 HELIX 10 10 GLU A 79 TYR A 89 1 11 HELIX 11 11 ASN A 103 LYS A 113 1 11 HELIX 12 12 LYS A 113 ILE A 122 1 10 HELIX 13 13 LYS A 133 ARG A 137 5 5 HELIX 14 14 THR A 145 GLY A 157 1 13 HELIX 15 15 GLY A 171 PHE A 184 1 14 SHEET 1 A 4 LYS B 13 GLU B 15 0 SHEET 2 A 4 LYS B 18 VAL B 26 -1 O LYS B 18 N GLU B 15 SHEET 3 A 4 GLU B 66 TRP B 73 1 O HIS B 71 N LEU B 21 SHEET 4 A 4 PHE B 57 TYR B 63 -1 N PHE B 57 O LEU B 72 SHEET 1 B 5 LYS B 13 GLU B 15 0 SHEET 2 B 5 LYS B 18 VAL B 26 -1 O LYS B 18 N GLU B 15 SHEET 3 B 5 VAL B 94 ALA B 100 1 O CYS B 98 N VAL B 26 SHEET 4 B 5 LYS B 126 LEU B 132 1 O LEU B 132 N PHE B 99 SHEET 5 B 5 TYR B 161 GLU B 163 1 O ILE B 162 N LEU B 129 SHEET 1 C 4 LYS A 13 ILE A 14 0 SHEET 2 C 4 LYS A 19 VAL A 26 -1 O ALA A 20 N LYS A 13 SHEET 3 C 4 GLU A 67 TRP A 73 1 O HIS A 71 N LEU A 21 SHEET 4 C 4 PHE A 57 LYS A 62 -1 N HIS A 59 O LEU A 70 SHEET 1 D 5 LYS A 13 ILE A 14 0 SHEET 2 D 5 LYS A 19 VAL A 26 -1 O ALA A 20 N LYS A 13 SHEET 3 D 5 VAL A 94 ALA A 100 1 O CYS A 98 N VAL A 26 SHEET 4 D 5 LYS A 126 LEU A 132 1 O LEU A 132 N PHE A 99 SHEET 5 D 5 TYR A 161 GLU A 163 1 O ILE A 162 N LEU A 129 LINK OG1 THR B 34 MG MG B 550 1555 1555 2.16 LINK O THR B 52 MG MG B 550 1555 1555 2.28 LINK O HOH B 220 MG MG B 550 1555 1555 2.15 LINK O HOH B 221 MG MG B 550 1555 1555 2.18 LINK O HOH B 222 MG MG B 550 1555 1555 2.17 LINK O3B GDP B 274 MG MG B 550 1555 1555 2.04 LINK OG1 THR A 34 MG MG A 192 1555 1555 2.34 LINK O THR A 52 MG MG A 192 1555 1555 2.32 LINK MG MG A 192 O HOH A 205 1555 1555 2.09 LINK MG MG A 192 O HOH A 207 1555 1555 2.11 LINK MG MG A 192 O HOH A 256 1555 1555 2.33 LINK MG MG A 192 O3B GDP A 274 1555 1555 2.32 CISPEP 1 LYS B 187 PRO B 188 0 9.76 SITE 1 AC1 26 ALA B 30 VAL B 31 GLY B 32 LYS B 33 SITE 2 AC1 26 THR B 34 CYS B 35 ALA B 48 VAL B 50 SITE 3 AC1 26 HIS B 120 LYS B 133 ASP B 135 LEU B 136 SITE 4 AC1 26 SER B 165 SER B 166 VAL B 167 HOH B 203 SITE 5 AC1 26 HOH B 216 HOH B 220 HOH B 221 HOH B 222 SITE 6 AC1 26 HOH B 224 HOH B 232 HOH B 249 HOH B 280 SITE 7 AC1 26 HOH B 308 MG B 550 SITE 1 AC2 6 THR B 34 THR B 52 HOH B 220 HOH B 221 SITE 2 AC2 6 HOH B 222 GDP B 274 SITE 1 AC3 6 GLY B 171 LEU B 172 ASN B 173 GLU B 174 SITE 2 AC3 6 HOH B 237 HOH B 268 SITE 1 AC4 25 ALA A 30 VAL A 31 GLY A 32 LYS A 33 SITE 2 AC4 25 THR A 34 CYS A 35 SER A 111 THR A 112 SITE 3 AC4 25 LYS A 133 ASP A 135 LEU A 136 SER A 165 SITE 4 AC4 25 SER A 166 VAL A 167 MG A 192 HOH A 201 SITE 5 AC4 25 HOH A 205 HOH A 207 HOH A 211 HOH A 212 SITE 6 AC4 25 HOH A 226 HOH A 227 HOH A 256 HOH A 283 SITE 7 AC4 25 HOH A 288 SITE 1 AC5 6 THR A 34 THR A 52 HOH A 205 HOH A 207 SITE 2 AC5 6 HOH A 256 GDP A 274 SITE 1 AC6 6 GLY A 171 LEU A 172 ASN A 173 GLU A 174 SITE 2 AC6 6 HOH A 245 LYS B 146 SITE 1 AC7 9 ASP A 28 GLY A 29 GLY A 77 TRP A 114 SITE 2 AC7 9 HOH A 198 HOH A 200 HOH A 223 HOH A 229 SITE 3 AC7 9 HOH A 238 CRYST1 50.300 54.476 132.285 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007559 0.00000