HEADER HYDROLASE/HYDROLASE INHIBITOR 20-APR-11 3RM8 TITLE AMCASE IN COMPLEX WITH COMPOUND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACIDIC MAMMALIAN CHITINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN RESIDUES 22-408; COMPND 5 SYNONYM: AMCASE, LUNG-SPECIFIC PROTEIN TSA1902; COMPND 6 EC: 3.2.1.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHIA; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: OVARY KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OLLAND REVDAT 2 13-SEP-23 3RM8 1 REMARK SEQADV REVDAT 1 24-AUG-11 3RM8 0 JRNL AUTH D.C.COLE,A.M.OLLAND,J.JACOB,J.BROOKS,M.G.BURSAVICH, JRNL AUTH 2 R.CZERWINSKI,C.DECLERCQ,M.JOHNSON,D.JOSEPH-MCCARTHY, JRNL AUTH 3 J.W.ELLINGBOE,L.LIN,P.NOWAK,E.PRESMAN,J.STRAND,A.TAM, JRNL AUTH 4 C.M.M.WILLIAMS,S.YAO,D.H.H.TSAO,L.J.FITZ JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF ACIDIC MAMMALIAN JRNL TITL 2 CHITINASE INHIBITORS JRNL REF J.MED.CHEM. V. 53 6122 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20666458 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 59551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2763 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5940 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6195 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8452 ; 1.000 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 5.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;35.632 ;24.898 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 927 ;11.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 865 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4866 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3120 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4254 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 451 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3833 ; 0.343 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5996 ; 0.541 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2830 ; 0.869 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2454 ; 1.352 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5099 48.7066 74.2647 REMARK 3 T TENSOR REMARK 3 T11: -0.0302 T22: -0.0494 REMARK 3 T33: -0.0340 T12: -0.0090 REMARK 3 T13: -0.0041 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.5529 L22: 0.3763 REMARK 3 L33: 0.5545 L12: -0.2537 REMARK 3 L13: -0.0478 L23: 0.0794 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.0297 S13: -0.0384 REMARK 3 S21: -0.0160 S22: -0.0050 S23: -0.0066 REMARK 3 S31: 0.0044 S32: 0.0132 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 394 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1477 46.2512 40.9253 REMARK 3 T TENSOR REMARK 3 T11: -0.0326 T22: -0.0443 REMARK 3 T33: -0.0449 T12: 0.0027 REMARK 3 T13: -0.0110 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6358 L22: 0.6557 REMARK 3 L33: 0.4602 L12: 0.1012 REMARK 3 L13: -0.1914 L23: 0.1510 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0538 S13: -0.0221 REMARK 3 S21: 0.0229 S22: -0.0219 S23: 0.0583 REMARK 3 S31: 0.0000 S32: -0.0321 S33: 0.0280 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 705 REMARK 3 RESIDUE RANGE : B 501 B 735 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0491 47.9450 55.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: -0.0079 REMARK 3 T33: 0.0091 T12: 0.0000 REMARK 3 T13: 0.0091 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1846 L22: 0.0609 REMARK 3 L33: 0.3686 L12: -0.0242 REMARK 3 L13: -0.0146 L23: 0.0850 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0095 S13: -0.0198 REMARK 3 S21: 0.0031 S22: -0.0020 S23: 0.0115 REMARK 3 S31: -0.0116 S32: -0.0016 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 417 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7806 49.5122 68.7860 REMARK 3 T TENSOR REMARK 3 T11: -0.0010 T22: -0.0014 REMARK 3 T33: -0.0015 T12: -0.0005 REMARK 3 T13: 0.0003 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.2552 S13: 0.0472 REMARK 3 S21: -0.3118 S22: -0.2754 S23: -0.3335 REMARK 3 S31: -0.1169 S32: 0.4796 S33: 0.2630 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 417 B 417 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0890 47.8063 46.1036 REMARK 3 T TENSOR REMARK 3 T11: -0.0013 T22: -0.0012 REMARK 3 T33: -0.0020 T12: 0.0013 REMARK 3 T13: -0.0018 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 10.2770 REMARK 3 L33: 4.2637 L12: -0.3249 REMARK 3 L13: -0.2093 L23: 6.6195 REMARK 3 S TENSOR REMARK 3 S11: 0.2545 S12: -0.1294 S13: 0.4592 REMARK 3 S21: 0.2816 S22: -0.3967 S23: 0.5082 REMARK 3 S31: -0.0027 S32: -0.5633 S33: 0.1421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3FY1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.90200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.62400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.90200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.84200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.62400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 399 REMARK 465 PRO A 400 REMARK 465 ILE A 401 REMARK 465 GLU A 402 REMARK 465 PRO A 403 REMARK 465 ILE A 404 REMARK 465 THR A 405 REMARK 465 ALA A 406 REMARK 465 ALA A 407 REMARK 465 PRO A 408 REMARK 465 GLY A 409 REMARK 465 SER A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 THR B 395 REMARK 465 ALA B 396 REMARK 465 PRO B 397 REMARK 465 ALA B 398 REMARK 465 GLN B 399 REMARK 465 PRO B 400 REMARK 465 ILE B 401 REMARK 465 GLU B 402 REMARK 465 PRO B 403 REMARK 465 ILE B 404 REMARK 465 THR B 405 REMARK 465 ALA B 406 REMARK 465 ALA B 407 REMARK 465 PRO B 408 REMARK 465 GLY B 409 REMARK 465 SER B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 HIS B 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 69 -54.22 -122.89 REMARK 500 GLU A 131 43.02 70.81 REMARK 500 ASP A 138 52.82 -118.08 REMARK 500 ASP A 234 94.54 -68.92 REMARK 500 ILE B 69 -51.13 -121.86 REMARK 500 GLU B 131 42.39 71.20 REMARK 500 THR B 266 37.22 -94.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RM8 A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RM8 B 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RM4 RELATED DB: PDB REMARK 900 RELATED ID: 3RM9 RELATED DB: PDB REMARK 900 RELATED ID: 3RME RELATED DB: PDB DBREF 3RM8 A 22 408 UNP Q9BZP6 CHIA_HUMAN 22 408 DBREF 3RM8 B 22 408 UNP Q9BZP6 CHIA_HUMAN 22 408 SEQADV 3RM8 ASP A 45 UNP Q9BZP6 ASN 45 VARIANT SEQADV 3RM8 ASN A 47 UNP Q9BZP6 ASP 47 VARIANT SEQADV 3RM8 MET A 61 UNP Q9BZP6 ARG 61 VARIANT SEQADV 3RM8 VAL A 339 UNP Q9BZP6 ILE 339 VARIANT SEQADV 3RM8 GLY A 409 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 SER A 410 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 411 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 412 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 413 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 414 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 415 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS A 416 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 ASP B 45 UNP Q9BZP6 ASN 45 VARIANT SEQADV 3RM8 ASN B 47 UNP Q9BZP6 ASP 47 VARIANT SEQADV 3RM8 MET B 61 UNP Q9BZP6 ARG 61 VARIANT SEQADV 3RM8 VAL B 339 UNP Q9BZP6 ILE 339 VARIANT SEQADV 3RM8 GLY B 409 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 SER B 410 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 411 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 412 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 413 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 414 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 415 UNP Q9BZP6 EXPRESSION TAG SEQADV 3RM8 HIS B 416 UNP Q9BZP6 EXPRESSION TAG SEQRES 1 A 395 TYR GLN LEU THR CYS TYR PHE THR ASN TRP ALA GLN TYR SEQRES 2 A 395 ARG PRO GLY LEU GLY ARG PHE MET PRO ASP ASP ILE ASN SEQRES 3 A 395 PRO CYS LEU CYS THR HIS LEU ILE TYR ALA PHE ALA GLY SEQRES 4 A 395 MET GLN ASN ASN GLU ILE THR THR ILE GLU TRP ASN ASP SEQRES 5 A 395 VAL THR LEU TYR GLN ALA PHE ASN GLY LEU LYS ASN LYS SEQRES 6 A 395 ASN SER GLN LEU LYS THR LEU LEU ALA ILE GLY GLY TRP SEQRES 7 A 395 ASN PHE GLY THR ALA PRO PHE THR ALA MET VAL SER THR SEQRES 8 A 395 PRO GLU ASN ARG GLN THR PHE ILE THR SER VAL ILE LYS SEQRES 9 A 395 PHE LEU ARG GLN TYR GLU PHE ASP GLY LEU ASP PHE ASP SEQRES 10 A 395 TRP GLU TYR PRO GLY SER ARG GLY SER PRO PRO GLN ASP SEQRES 11 A 395 LYS HIS LEU PHE THR VAL LEU VAL GLN GLU MET ARG GLU SEQRES 12 A 395 ALA PHE GLU GLN GLU ALA LYS GLN ILE ASN LYS PRO ARG SEQRES 13 A 395 LEU MET VAL THR ALA ALA VAL ALA ALA GLY ILE SER ASN SEQRES 14 A 395 ILE GLN SER GLY TYR GLU ILE PRO GLN LEU SER GLN TYR SEQRES 15 A 395 LEU ASP TYR ILE HIS VAL MET THR TYR ASP LEU HIS GLY SEQRES 16 A 395 SER TRP GLU GLY TYR THR GLY GLU ASN SER PRO LEU TYR SEQRES 17 A 395 LYS TYR PRO THR ASP THR GLY SER ASN ALA TYR LEU ASN SEQRES 18 A 395 VAL ASP TYR VAL MET ASN TYR TRP LYS ASP ASN GLY ALA SEQRES 19 A 395 PRO ALA GLU LYS LEU ILE VAL GLY PHE PRO THR TYR GLY SEQRES 20 A 395 HIS ASN PHE ILE LEU SER ASN PRO SER ASN THR GLY ILE SEQRES 21 A 395 GLY ALA PRO THR SER GLY ALA GLY PRO ALA GLY PRO TYR SEQRES 22 A 395 ALA LYS GLU SER GLY ILE TRP ALA TYR TYR GLU ILE CYS SEQRES 23 A 395 THR PHE LEU LYS ASN GLY ALA THR GLN GLY TRP ASP ALA SEQRES 24 A 395 PRO GLN GLU VAL PRO TYR ALA TYR GLN GLY ASN VAL TRP SEQRES 25 A 395 VAL GLY TYR ASP ASN VAL LYS SER PHE ASP ILE LYS ALA SEQRES 26 A 395 GLN TRP LEU LYS HIS ASN LYS PHE GLY GLY ALA MET VAL SEQRES 27 A 395 TRP ALA ILE ASP LEU ASP ASP PHE THR GLY THR PHE CYS SEQRES 28 A 395 ASN GLN GLY LYS PHE PRO LEU ILE SER THR LEU LYS LYS SEQRES 29 A 395 ALA LEU GLY LEU GLN SER ALA SER CYS THR ALA PRO ALA SEQRES 30 A 395 GLN PRO ILE GLU PRO ILE THR ALA ALA PRO GLY SER HIS SEQRES 31 A 395 HIS HIS HIS HIS HIS SEQRES 1 B 395 TYR GLN LEU THR CYS TYR PHE THR ASN TRP ALA GLN TYR SEQRES 2 B 395 ARG PRO GLY LEU GLY ARG PHE MET PRO ASP ASP ILE ASN SEQRES 3 B 395 PRO CYS LEU CYS THR HIS LEU ILE TYR ALA PHE ALA GLY SEQRES 4 B 395 MET GLN ASN ASN GLU ILE THR THR ILE GLU TRP ASN ASP SEQRES 5 B 395 VAL THR LEU TYR GLN ALA PHE ASN GLY LEU LYS ASN LYS SEQRES 6 B 395 ASN SER GLN LEU LYS THR LEU LEU ALA ILE GLY GLY TRP SEQRES 7 B 395 ASN PHE GLY THR ALA PRO PHE THR ALA MET VAL SER THR SEQRES 8 B 395 PRO GLU ASN ARG GLN THR PHE ILE THR SER VAL ILE LYS SEQRES 9 B 395 PHE LEU ARG GLN TYR GLU PHE ASP GLY LEU ASP PHE ASP SEQRES 10 B 395 TRP GLU TYR PRO GLY SER ARG GLY SER PRO PRO GLN ASP SEQRES 11 B 395 LYS HIS LEU PHE THR VAL LEU VAL GLN GLU MET ARG GLU SEQRES 12 B 395 ALA PHE GLU GLN GLU ALA LYS GLN ILE ASN LYS PRO ARG SEQRES 13 B 395 LEU MET VAL THR ALA ALA VAL ALA ALA GLY ILE SER ASN SEQRES 14 B 395 ILE GLN SER GLY TYR GLU ILE PRO GLN LEU SER GLN TYR SEQRES 15 B 395 LEU ASP TYR ILE HIS VAL MET THR TYR ASP LEU HIS GLY SEQRES 16 B 395 SER TRP GLU GLY TYR THR GLY GLU ASN SER PRO LEU TYR SEQRES 17 B 395 LYS TYR PRO THR ASP THR GLY SER ASN ALA TYR LEU ASN SEQRES 18 B 395 VAL ASP TYR VAL MET ASN TYR TRP LYS ASP ASN GLY ALA SEQRES 19 B 395 PRO ALA GLU LYS LEU ILE VAL GLY PHE PRO THR TYR GLY SEQRES 20 B 395 HIS ASN PHE ILE LEU SER ASN PRO SER ASN THR GLY ILE SEQRES 21 B 395 GLY ALA PRO THR SER GLY ALA GLY PRO ALA GLY PRO TYR SEQRES 22 B 395 ALA LYS GLU SER GLY ILE TRP ALA TYR TYR GLU ILE CYS SEQRES 23 B 395 THR PHE LEU LYS ASN GLY ALA THR GLN GLY TRP ASP ALA SEQRES 24 B 395 PRO GLN GLU VAL PRO TYR ALA TYR GLN GLY ASN VAL TRP SEQRES 25 B 395 VAL GLY TYR ASP ASN VAL LYS SER PHE ASP ILE LYS ALA SEQRES 26 B 395 GLN TRP LEU LYS HIS ASN LYS PHE GLY GLY ALA MET VAL SEQRES 27 B 395 TRP ALA ILE ASP LEU ASP ASP PHE THR GLY THR PHE CYS SEQRES 28 B 395 ASN GLN GLY LYS PHE PRO LEU ILE SER THR LEU LYS LYS SEQRES 29 B 395 ALA LEU GLY LEU GLN SER ALA SER CYS THR ALA PRO ALA SEQRES 30 B 395 GLN PRO ILE GLU PRO ILE THR ALA ALA PRO GLY SER HIS SEQRES 31 B 395 HIS HIS HIS HIS HIS HET RM8 A 417 23 HET RM8 B 417 23 HETNAM RM8 2-METHYL-3-{[4-(PYRIDIN-2-YL)PIPERAZIN-1-YL]METHYL}-1H- HETNAM 2 RM8 INDOLE FORMUL 3 RM8 2(C19 H22 N4) FORMUL 5 HOH *440(H2 O) HELIX 1 1 TRP A 31 ARG A 35 5 5 HELIX 2 2 PRO A 36 ARG A 40 5 5 HELIX 3 3 MET A 42 ILE A 46 5 5 HELIX 4 4 ASN A 72 GLY A 82 1 11 HELIX 5 5 LEU A 83 LYS A 86 5 4 HELIX 6 6 THR A 103 SER A 111 1 9 HELIX 7 7 THR A 112 GLU A 131 1 20 HELIX 8 8 GLN A 150 ASN A 174 1 25 HELIX 9 9 GLY A 187 TYR A 195 1 9 HELIX 10 10 GLU A 196 LEU A 204 1 9 HELIX 11 11 GLY A 216 GLY A 220 5 5 HELIX 12 12 THR A 235 LEU A 241 5 7 HELIX 13 13 ASN A 242 ASN A 253 1 12 HELIX 14 14 PRO A 256 GLU A 258 5 3 HELIX 15 15 TYR A 303 ASN A 312 1 10 HELIX 16 16 ASN A 338 ASN A 352 1 15 HELIX 17 17 PHE A 377 LEU A 387 1 11 HELIX 18 18 TRP B 31 ARG B 35 5 5 HELIX 19 19 PRO B 36 ARG B 40 5 5 HELIX 20 20 MET B 42 ILE B 46 5 5 HELIX 21 21 ASN B 72 LEU B 83 1 12 HELIX 22 22 LYS B 84 LYS B 86 5 3 HELIX 23 23 THR B 103 SER B 111 1 9 HELIX 24 24 THR B 112 GLU B 131 1 20 HELIX 25 25 GLN B 150 ASN B 174 1 25 HELIX 26 26 GLY B 187 TYR B 195 1 9 HELIX 27 27 GLU B 196 LEU B 204 1 9 HELIX 28 28 GLY B 216 GLY B 220 5 5 HELIX 29 29 THR B 235 LEU B 241 5 7 HELIX 30 30 ASN B 242 ASN B 253 1 12 HELIX 31 31 PRO B 256 GLU B 258 5 3 HELIX 32 32 TYR B 303 ASN B 312 1 10 HELIX 33 33 ASN B 338 LYS B 353 1 16 HELIX 34 34 ALA B 361 ASP B 365 5 5 HELIX 35 35 PHE B 377 LEU B 387 1 11 SHEET 1 A10 GLU A 65 THR A 67 0 SHEET 2 A10 HIS A 53 GLN A 62 -1 N GLN A 62 O GLU A 65 SHEET 3 A10 LYS A 91 GLY A 97 1 O ALA A 95 N TYR A 56 SHEET 4 A10 GLY A 134 ASP A 138 1 O ASP A 136 N LEU A 94 SHEET 5 A10 MET A 179 VAL A 184 1 O THR A 181 N PHE A 137 SHEET 6 A10 TYR A 206 VAL A 209 1 O HIS A 208 N ALA A 182 SHEET 7 A10 LEU A 260 PRO A 265 1 O ILE A 261 N ILE A 207 SHEET 8 A10 GLY A 356 TRP A 360 1 O MET A 358 N VAL A 262 SHEET 9 A10 GLN A 23 THR A 29 1 N THR A 25 O ALA A 357 SHEET 10 A10 HIS A 53 GLN A 62 1 O ILE A 55 N PHE A 28 SHEET 1 B 3 THR A 285 ALA A 288 0 SHEET 2 B 3 TYR A 267 LEU A 273 -1 N ILE A 272 O GLY A 287 SHEET 3 B 3 ILE A 300 ALA A 302 -1 O TRP A 301 N GLY A 268 SHEET 1 C 5 THR A 285 ALA A 288 0 SHEET 2 C 5 TYR A 267 LEU A 273 -1 N ILE A 272 O GLY A 287 SHEET 3 C 5 VAL A 332 GLY A 335 -1 O GLY A 335 N HIS A 269 SHEET 4 C 5 VAL A 324 GLN A 329 -1 N ALA A 327 O VAL A 334 SHEET 5 C 5 THR A 315 ASP A 319 -1 N GLY A 317 O TYR A 326 SHEET 1 D10 GLU B 65 THR B 67 0 SHEET 2 D10 HIS B 53 GLN B 62 -1 N GLN B 62 O GLU B 65 SHEET 3 D10 LYS B 91 GLY B 97 1 O ALA B 95 N ALA B 59 SHEET 4 D10 GLY B 134 ASP B 138 1 O ASP B 136 N LEU B 94 SHEET 5 D10 MET B 179 VAL B 184 1 O THR B 181 N LEU B 135 SHEET 6 D10 TYR B 206 VAL B 209 1 O HIS B 208 N ALA B 182 SHEET 7 D10 LEU B 260 PRO B 265 1 O ILE B 261 N ILE B 207 SHEET 8 D10 GLY B 356 TRP B 360 1 O MET B 358 N VAL B 262 SHEET 9 D10 GLN B 23 THR B 29 1 N TYR B 27 O VAL B 359 SHEET 10 D10 HIS B 53 GLN B 62 1 O ILE B 55 N PHE B 28 SHEET 1 E 3 THR B 285 ALA B 288 0 SHEET 2 E 3 TYR B 267 LEU B 273 -1 N ILE B 272 O SER B 286 SHEET 3 E 3 ILE B 300 ALA B 302 -1 O TRP B 301 N GLY B 268 SHEET 1 F 5 THR B 285 ALA B 288 0 SHEET 2 F 5 TYR B 267 LEU B 273 -1 N ILE B 272 O SER B 286 SHEET 3 F 5 VAL B 332 GLY B 335 -1 O GLY B 335 N HIS B 269 SHEET 4 F 5 VAL B 324 GLN B 329 -1 N ALA B 327 O VAL B 334 SHEET 5 F 5 THR B 315 ASP B 319 -1 N GLY B 317 O TYR B 326 SSBOND 1 CYS A 26 CYS A 51 1555 1555 2.02 SSBOND 2 CYS A 49 CYS A 394 1555 1555 2.01 SSBOND 3 CYS A 307 CYS A 372 1555 1555 2.03 SSBOND 4 CYS B 26 CYS B 51 1555 1555 2.03 SSBOND 5 CYS B 49 CYS B 394 1555 1555 2.02 SSBOND 6 CYS B 307 CYS B 372 1555 1555 2.03 CISPEP 1 ALA A 57 PHE A 58 0 -2.07 CISPEP 2 GLU A 140 TYR A 141 0 -3.34 CISPEP 3 TRP A 360 ALA A 361 0 -2.11 CISPEP 4 ALA B 57 PHE B 58 0 -2.61 CISPEP 5 GLU B 140 TYR B 141 0 -4.63 CISPEP 6 TRP B 360 ALA B 361 0 -3.13 SITE 1 AC1 13 TRP A 99 ASP A 138 GLU A 140 MET A 210 SITE 2 AC1 13 TYR A 212 ASP A 213 TYR A 267 GLU A 297 SITE 3 AC1 13 ILE A 300 TRP A 360 LEU A 364 HOH A 584 SITE 4 AC1 13 HOH A 588 SITE 1 AC2 13 TRP B 99 ASP B 138 GLU B 140 ALA B 183 SITE 2 AC2 13 MET B 210 TYR B 212 ASP B 213 TYR B 267 SITE 3 AC2 13 GLU B 297 ILE B 300 TRP B 360 HOH B 595 SITE 4 AC2 13 HOH B 628 CRYST1 63.684 89.248 125.804 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007949 0.00000