data_3S01 # _entry.id 3S01 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S01 pdb_00003s01 10.2210/pdb3s01/pdb RCSB RCSB065589 ? ? WWPDB D_1000065589 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 421317 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3S01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for Stem Cell Biology (STEMCELL)' 2 'Partnership for T-Cell Biology (TCELL)' 3 # _citation.id primary _citation.title 'Crystal structure of a Heterogeneous nuclear ribonucleoprotein L (Hnrpl) from Mus musculuS at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for Stem Cell Biology (STEMCELL)' 2 ? primary 'Partnership for T-Cell Biology (TCELL)' 3 ? # _cell.entry_id 3S01 _cell.length_a 48.672 _cell.length_b 37.964 _cell.length_c 57.953 _cell.angle_alpha 90.00 _cell.angle_beta 105.44 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3S01 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heterogeneous nuclear ribonucleoprotein L' 24164.891 1 ? ? 'RRM 3 domain containg residues 376-586' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 2 ? ? ? ? 4 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hnRNP L' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GADSPVL(MSE)VYGLDQSK(MSE)NCDRVFNVFCLYGNVEKVKF(MSE)KSKPGAA(MSE)VE(MSE)ADGYAVDRAIT HLNNNF(MSE)FGQK(MSE)NVCVSKQPAI(MSE)PGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHF FNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ(MSE)KNPNGPYPYTLKLC FSTAQHAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 421317 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ASP n 1 4 SER n 1 5 PRO n 1 6 VAL n 1 7 LEU n 1 8 MSE n 1 9 VAL n 1 10 TYR n 1 11 GLY n 1 12 LEU n 1 13 ASP n 1 14 GLN n 1 15 SER n 1 16 LYS n 1 17 MSE n 1 18 ASN n 1 19 CYS n 1 20 ASP n 1 21 ARG n 1 22 VAL n 1 23 PHE n 1 24 ASN n 1 25 VAL n 1 26 PHE n 1 27 CYS n 1 28 LEU n 1 29 TYR n 1 30 GLY n 1 31 ASN n 1 32 VAL n 1 33 GLU n 1 34 LYS n 1 35 VAL n 1 36 LYS n 1 37 PHE n 1 38 MSE n 1 39 LYS n 1 40 SER n 1 41 LYS n 1 42 PRO n 1 43 GLY n 1 44 ALA n 1 45 ALA n 1 46 MSE n 1 47 VAL n 1 48 GLU n 1 49 MSE n 1 50 ALA n 1 51 ASP n 1 52 GLY n 1 53 TYR n 1 54 ALA n 1 55 VAL n 1 56 ASP n 1 57 ARG n 1 58 ALA n 1 59 ILE n 1 60 THR n 1 61 HIS n 1 62 LEU n 1 63 ASN n 1 64 ASN n 1 65 ASN n 1 66 PHE n 1 67 MSE n 1 68 PHE n 1 69 GLY n 1 70 GLN n 1 71 LYS n 1 72 MSE n 1 73 ASN n 1 74 VAL n 1 75 CYS n 1 76 VAL n 1 77 SER n 1 78 LYS n 1 79 GLN n 1 80 PRO n 1 81 ALA n 1 82 ILE n 1 83 MSE n 1 84 PRO n 1 85 GLY n 1 86 GLN n 1 87 SER n 1 88 TYR n 1 89 GLY n 1 90 LEU n 1 91 GLU n 1 92 ASP n 1 93 GLY n 1 94 SER n 1 95 CYS n 1 96 SER n 1 97 TYR n 1 98 LYS n 1 99 ASP n 1 100 PHE n 1 101 SER n 1 102 GLU n 1 103 SER n 1 104 ARG n 1 105 ASN n 1 106 ASN n 1 107 ARG n 1 108 PHE n 1 109 SER n 1 110 THR n 1 111 PRO n 1 112 GLU n 1 113 GLN n 1 114 ALA n 1 115 ALA n 1 116 LYS n 1 117 ASN n 1 118 ARG n 1 119 ILE n 1 120 GLN n 1 121 HIS n 1 122 PRO n 1 123 SER n 1 124 ASN n 1 125 VAL n 1 126 LEU n 1 127 HIS n 1 128 PHE n 1 129 PHE n 1 130 ASN n 1 131 ALA n 1 132 PRO n 1 133 LEU n 1 134 GLU n 1 135 VAL n 1 136 THR n 1 137 GLU n 1 138 GLU n 1 139 ASN n 1 140 PHE n 1 141 PHE n 1 142 GLU n 1 143 ILE n 1 144 CYS n 1 145 ASP n 1 146 GLU n 1 147 LEU n 1 148 GLY n 1 149 VAL n 1 150 LYS n 1 151 ARG n 1 152 PRO n 1 153 THR n 1 154 SER n 1 155 VAL n 1 156 LYS n 1 157 VAL n 1 158 PHE n 1 159 SER n 1 160 GLY n 1 161 LYS n 1 162 SER n 1 163 GLU n 1 164 ARG n 1 165 SER n 1 166 SER n 1 167 SER n 1 168 GLY n 1 169 LEU n 1 170 LEU n 1 171 GLU n 1 172 TRP n 1 173 ASP n 1 174 SER n 1 175 LYS n 1 176 SER n 1 177 ASP n 1 178 ALA n 1 179 LEU n 1 180 GLU n 1 181 THR n 1 182 LEU n 1 183 GLY n 1 184 PHE n 1 185 LEU n 1 186 ASN n 1 187 HIS n 1 188 TYR n 1 189 GLN n 1 190 MSE n 1 191 LYS n 1 192 ASN n 1 193 PRO n 1 194 ASN n 1 195 GLY n 1 196 PRO n 1 197 TYR n 1 198 PRO n 1 199 TYR n 1 200 THR n 1 201 LEU n 1 202 LYS n 1 203 LEU n 1 204 CYS n 1 205 PHE n 1 206 SER n 1 207 THR n 1 208 ALA n 1 209 GLN n 1 210 HIS n 1 211 ALA n 1 212 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC027206, Hnrnpl, Hnrpl' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNRPL_MOUSE _struct_ref.pdbx_db_accession Q8R081 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS ; _struct_ref.pdbx_align_begin 376 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S01 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 212 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8R081 _struct_ref_seq.db_align_beg 376 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 586 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 376 _struct_ref_seq.pdbx_auth_seq_align_end 586 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3S01 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8R081 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3S01 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.00% 2-propanol, 20.00% polyethylene glycol 4000, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-03-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97938 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97938 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3S01 _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 29.512 _reflns.number_obs 11314 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_netI_over_sigmaI 6.800 _reflns.percent_possible_obs 98.100 _reflns.B_iso_Wilson_estimate 26.714 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.150 2.230 4232 ? 2242 0.452 1.9 ? ? ? ? ? 96.500 1 1 2.230 2.320 4108 ? 2144 0.351 2.4 ? ? ? ? ? 99.000 2 1 2.320 2.420 3935 ? 2048 0.297 2.9 ? ? ? ? ? 100.000 3 1 2.420 2.550 4206 ? 2195 0.249 3.2 ? ? ? ? ? 98.900 4 1 2.550 2.710 4231 ? 2196 0.204 3.8 ? ? ? ? ? 99.000 5 1 2.710 2.920 4162 ? 2156 0.148 5.3 ? ? ? ? ? 99.200 6 1 2.920 3.210 4083 ? 2115 0.107 7.0 ? ? ? ? ? 98.200 7 1 3.210 3.670 4107 ? 2126 0.062 11.1 ? ? ? ? ? 97.500 8 1 3.670 4.610 4065 ? 2108 0.046 14.6 ? ? ? ? ? 97.500 9 1 4.610 29.512 4141 ? 2137 0.040 16.1 ? ? ? ? ? 95.700 10 1 # _refine.entry_id 3S01 _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 29.512 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 11283 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. 2-PROPANOL (IPA) AND GLYCEROL (GOL) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTIONS ARE MODELED. 5. THE MAD PHASES (HL COEFFICIENTS) WERE USED AS RESTRAINTS DURING REFINEMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1607 _refine.ls_R_factor_R_work 0.1586 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2056 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.7300 _refine.ls_number_reflns_R_free 534 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.8723 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -5.3714 _refine.aniso_B[2][2] 3.2102 _refine.aniso_B[3][3] 2.1612 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.5945 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9523 _refine.correlation_coeff_Fo_to_Fc_free 0.9262 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 105.560 _refine.B_iso_min 12.160 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1616 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 29.512 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 776 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 44 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 248 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1684 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 209 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2000 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1684 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2274 1.060 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.530 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.650 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1500 _refine_ls_shell.d_res_low 2.3500 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2526 _refine_ls_shell.R_factor_all 0.1810 _refine_ls_shell.R_factor_R_work 0.1771 _refine_ls_shell.R_factor_R_free 0.2478 _refine_ls_shell.percent_reflns_R_free 5.3200 _refine_ls_shell.number_reflns_R_free 142 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2668 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S01 _struct.title 'Crystal structure of a Heterogeneous nuclear ribonucleoprotein L (Hnrpl) from Mus musculus at 2.15 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ferredoxin-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA BINDING PROTEIN, Partnership for Stem Cell Biology, STEMCELL, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 3S01 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 18 ? CYS A 27 ? ASN A 392 CYS A 401 1 ? 10 HELX_P HELX_P2 2 ASP A 51 ? ASN A 63 ? ASP A 425 ASN A 437 1 ? 13 HELX_P HELX_P3 3 THR A 110 ? LYS A 116 ? THR A 484 LYS A 490 1 ? 7 HELX_P HELX_P4 4 THR A 136 ? GLY A 148 ? THR A 510 GLY A 522 1 ? 13 HELX_P HELX_P5 5 SER A 174 ? ASN A 186 ? SER A 548 ASN A 560 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 7 C ? ? ? 1_555 A MSE 8 N ? ? A LEU 381 A MSE 382 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A VAL 9 N ? ? A MSE 382 A VAL 383 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A LYS 16 C ? ? ? 1_555 A MSE 17 N ? ? A LYS 390 A MSE 391 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale4 covale both ? A MSE 17 C ? ? ? 1_555 A ASN 18 N ? ? A MSE 391 A ASN 392 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale5 covale both ? A PHE 37 C ? ? ? 1_555 A MSE 38 N ? ? A PHE 411 A MSE 412 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale6 covale both ? A MSE 38 C ? ? ? 1_555 A LYS 39 N ? ? A MSE 412 A LYS 413 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale7 covale both ? A ALA 45 C ? ? ? 1_555 A MSE 46 N ? ? A ALA 419 A MSE 420 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale8 covale both ? A MSE 46 C ? ? ? 1_555 A VAL 47 N ? ? A MSE 420 A VAL 421 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale9 covale both ? A GLU 48 C ? ? ? 1_555 A MSE 49 N ? ? A GLU 422 A MSE 423 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? A MSE 49 C ? ? ? 1_555 A ALA 50 N ? ? A MSE 423 A ALA 424 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale11 covale both ? A PHE 66 C ? ? ? 1_555 A MSE 67 N ? ? A PHE 440 A MSE 441 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale12 covale both ? A MSE 67 C ? ? ? 1_555 A PHE 68 N ? ? A MSE 441 A PHE 442 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale13 covale both ? A LYS 71 C ? ? ? 1_555 A MSE 72 N ? ? A LYS 445 A MSE 446 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale14 covale both ? A MSE 72 C ? ? ? 1_555 A ASN 73 N ? ? A MSE 446 A ASN 447 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale15 covale both ? A ILE 82 C ? ? ? 1_555 A MSE 83 N ? ? A ILE 456 A MSE 457 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale16 covale both ? A MSE 83 C ? ? ? 1_555 A PRO 84 N ? ? A MSE 457 A PRO 458 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale17 covale both ? A GLN 189 C ? ? ? 1_555 A MSE 190 N ? ? A GLN 563 A MSE 564 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale18 covale both ? A MSE 190 C ? ? ? 1_555 A LYS 191 N ? ? A MSE 564 A LYS 565 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 4 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 73 ? VAL A 76 ? ASN A 447 VAL A 450 A 2 VAL A 6 ? TYR A 10 ? VAL A 380 TYR A 384 A 3 ALA A 45 ? MSE A 49 ? ALA A 419 MSE A 423 A 4 VAL A 32 ? PHE A 37 ? VAL A 406 PHE A 411 A 5 TYR A 97 ? ASP A 99 ? TYR A 471 ASP A 473 B 1 PHE A 66 ? MSE A 67 ? PHE A 440 MSE A 441 B 2 GLN A 70 ? LYS A 71 ? GLN A 444 LYS A 445 C 1 SER A 154 ? VAL A 157 ? SER A 528 VAL A 531 C 2 SER A 166 ? GLU A 171 ? SER A 540 GLU A 545 C 3 VAL A 125 ? ALA A 131 ? VAL A 499 ALA A 505 C 4 LYS A 202 ? PHE A 205 ? LYS A 576 PHE A 579 D 1 GLN A 189 ? MSE A 190 ? GLN A 563 MSE A 564 D 2 TYR A 199 ? THR A 200 ? TYR A 573 THR A 574 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 75 ? O CYS A 449 N MSE A 8 ? N MSE A 382 A 2 3 N LEU A 7 ? N LEU A 381 O VAL A 47 ? O VAL A 421 A 3 4 O GLU A 48 ? O GLU A 422 N GLU A 33 ? N GLU A 407 A 4 5 N VAL A 35 ? N VAL A 409 O LYS A 98 ? O LYS A 472 B 1 2 N MSE A 67 ? N MSE A 441 O GLN A 70 ? O GLN A 444 C 1 2 N LYS A 156 ? N LYS A 530 O LEU A 169 ? O LEU A 543 C 2 3 O LEU A 170 ? O LEU A 544 N LEU A 126 ? N LEU A 500 C 3 4 N HIS A 127 ? N HIS A 501 O CYS A 204 ? O CYS A 578 D 1 2 N MSE A 190 ? N MSE A 564 O TYR A 199 ? O TYR A 573 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 600 ? 5 'BINDING SITE FOR RESIDUE GOL A 600' AC2 Software A IPA 601 ? 4 'BINDING SITE FOR RESIDUE IPA A 601' AC3 Software A IPA 602 ? 3 'BINDING SITE FOR RESIDUE IPA A 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 24 ? ASN A 398 . ? 1_555 ? 2 AC1 5 SER A 103 ? SER A 477 . ? 1_555 ? 3 AC1 5 ASN A 105 ? ASN A 479 . ? 1_555 ? 4 AC1 5 HIS A 187 ? HIS A 561 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 719 . ? 1_555 ? 6 AC2 4 ASP A 173 ? ASP A 547 . ? 1_555 ? 7 AC2 4 SER A 174 ? SER A 548 . ? 1_555 ? 8 AC2 4 LYS A 175 ? LYS A 549 . ? 1_555 ? 9 AC2 4 HOH E . ? HOH A 629 . ? 1_555 ? 10 AC3 3 TYR A 10 ? TYR A 384 . ? 1_555 ? 11 AC3 3 SER A 77 ? SER A 451 . ? 1_555 ? 12 AC3 3 LYS A 78 ? LYS A 452 . ? 1_555 ? # _atom_sites.entry_id 3S01 _atom_sites.fract_transf_matrix[1][1] 0.020546 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026341 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017901 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 ALA 2 376 376 ALA ALA A . n A 1 3 ASP 3 377 377 ASP ASP A . n A 1 4 SER 4 378 378 SER SER A . n A 1 5 PRO 5 379 379 PRO PRO A . n A 1 6 VAL 6 380 380 VAL VAL A . n A 1 7 LEU 7 381 381 LEU LEU A . n A 1 8 MSE 8 382 382 MSE MSE A . n A 1 9 VAL 9 383 383 VAL VAL A . n A 1 10 TYR 10 384 384 TYR TYR A . n A 1 11 GLY 11 385 385 GLY GLY A . n A 1 12 LEU 12 386 386 LEU LEU A . n A 1 13 ASP 13 387 387 ASP ASP A . n A 1 14 GLN 14 388 388 GLN GLN A . n A 1 15 SER 15 389 389 SER SER A . n A 1 16 LYS 16 390 390 LYS LYS A . n A 1 17 MSE 17 391 391 MSE MSE A . n A 1 18 ASN 18 392 392 ASN ASN A . n A 1 19 CYS 19 393 393 CYS CYS A . n A 1 20 ASP 20 394 394 ASP ASP A . n A 1 21 ARG 21 395 395 ARG ARG A . n A 1 22 VAL 22 396 396 VAL VAL A . n A 1 23 PHE 23 397 397 PHE PHE A . n A 1 24 ASN 24 398 398 ASN ASN A . n A 1 25 VAL 25 399 399 VAL VAL A . n A 1 26 PHE 26 400 400 PHE PHE A . n A 1 27 CYS 27 401 401 CYS CYS A . n A 1 28 LEU 28 402 402 LEU LEU A . n A 1 29 TYR 29 403 403 TYR TYR A . n A 1 30 GLY 30 404 404 GLY GLY A . n A 1 31 ASN 31 405 405 ASN ASN A . n A 1 32 VAL 32 406 406 VAL VAL A . n A 1 33 GLU 33 407 407 GLU GLU A . n A 1 34 LYS 34 408 408 LYS LYS A . n A 1 35 VAL 35 409 409 VAL VAL A . n A 1 36 LYS 36 410 410 LYS LYS A . n A 1 37 PHE 37 411 411 PHE PHE A . n A 1 38 MSE 38 412 412 MSE MSE A . n A 1 39 LYS 39 413 413 LYS LYS A . n A 1 40 SER 40 414 414 SER SER A . n A 1 41 LYS 41 415 415 LYS LYS A . n A 1 42 PRO 42 416 416 PRO PRO A . n A 1 43 GLY 43 417 417 GLY GLY A . n A 1 44 ALA 44 418 418 ALA ALA A . n A 1 45 ALA 45 419 419 ALA ALA A . n A 1 46 MSE 46 420 420 MSE MSE A . n A 1 47 VAL 47 421 421 VAL VAL A . n A 1 48 GLU 48 422 422 GLU GLU A . n A 1 49 MSE 49 423 423 MSE MSE A . n A 1 50 ALA 50 424 424 ALA ALA A . n A 1 51 ASP 51 425 425 ASP ASP A . n A 1 52 GLY 52 426 426 GLY GLY A . n A 1 53 TYR 53 427 427 TYR TYR A . n A 1 54 ALA 54 428 428 ALA ALA A . n A 1 55 VAL 55 429 429 VAL VAL A . n A 1 56 ASP 56 430 430 ASP ASP A . n A 1 57 ARG 57 431 431 ARG ARG A . n A 1 58 ALA 58 432 432 ALA ALA A . n A 1 59 ILE 59 433 433 ILE ILE A . n A 1 60 THR 60 434 434 THR THR A . n A 1 61 HIS 61 435 435 HIS HIS A . n A 1 62 LEU 62 436 436 LEU LEU A . n A 1 63 ASN 63 437 437 ASN ASN A . n A 1 64 ASN 64 438 438 ASN ASN A . n A 1 65 ASN 65 439 439 ASN ASN A . n A 1 66 PHE 66 440 440 PHE PHE A . n A 1 67 MSE 67 441 441 MSE MSE A . n A 1 68 PHE 68 442 442 PHE PHE A . n A 1 69 GLY 69 443 443 GLY GLY A . n A 1 70 GLN 70 444 444 GLN GLN A . n A 1 71 LYS 71 445 445 LYS LYS A . n A 1 72 MSE 72 446 446 MSE MSE A . n A 1 73 ASN 73 447 447 ASN ASN A . n A 1 74 VAL 74 448 448 VAL VAL A . n A 1 75 CYS 75 449 449 CYS CYS A . n A 1 76 VAL 76 450 450 VAL VAL A . n A 1 77 SER 77 451 451 SER SER A . n A 1 78 LYS 78 452 452 LYS LYS A . n A 1 79 GLN 79 453 453 GLN GLN A . n A 1 80 PRO 80 454 454 PRO PRO A . n A 1 81 ALA 81 455 455 ALA ALA A . n A 1 82 ILE 82 456 456 ILE ILE A . n A 1 83 MSE 83 457 457 MSE MSE A . n A 1 84 PRO 84 458 458 PRO PRO A . n A 1 85 GLY 85 459 459 GLY GLY A . n A 1 86 GLN 86 460 460 GLN GLN A . n A 1 87 SER 87 461 461 SER SER A . n A 1 88 TYR 88 462 462 TYR TYR A . n A 1 89 GLY 89 463 463 GLY GLY A . n A 1 90 LEU 90 464 464 LEU LEU A . n A 1 91 GLU 91 465 465 GLU GLU A . n A 1 92 ASP 92 466 466 ASP ASP A . n A 1 93 GLY 93 467 467 GLY GLY A . n A 1 94 SER 94 468 468 SER SER A . n A 1 95 CYS 95 469 469 CYS CYS A . n A 1 96 SER 96 470 470 SER SER A . n A 1 97 TYR 97 471 471 TYR TYR A . n A 1 98 LYS 98 472 472 LYS LYS A . n A 1 99 ASP 99 473 473 ASP ASP A . n A 1 100 PHE 100 474 474 PHE PHE A . n A 1 101 SER 101 475 475 SER SER A . n A 1 102 GLU 102 476 476 GLU GLU A . n A 1 103 SER 103 477 477 SER SER A . n A 1 104 ARG 104 478 478 ARG ARG A . n A 1 105 ASN 105 479 479 ASN ASN A . n A 1 106 ASN 106 480 480 ASN ASN A . n A 1 107 ARG 107 481 481 ARG ARG A . n A 1 108 PHE 108 482 482 PHE PHE A . n A 1 109 SER 109 483 483 SER SER A . n A 1 110 THR 110 484 484 THR THR A . n A 1 111 PRO 111 485 485 PRO PRO A . n A 1 112 GLU 112 486 486 GLU GLU A . n A 1 113 GLN 113 487 487 GLN GLN A . n A 1 114 ALA 114 488 488 ALA ALA A . n A 1 115 ALA 115 489 489 ALA ALA A . n A 1 116 LYS 116 490 490 LYS LYS A . n A 1 117 ASN 117 491 491 ASN ASN A . n A 1 118 ARG 118 492 492 ARG ARG A . n A 1 119 ILE 119 493 493 ILE ILE A . n A 1 120 GLN 120 494 494 GLN GLN A . n A 1 121 HIS 121 495 495 HIS HIS A . n A 1 122 PRO 122 496 496 PRO PRO A . n A 1 123 SER 123 497 497 SER SER A . n A 1 124 ASN 124 498 498 ASN ASN A . n A 1 125 VAL 125 499 499 VAL VAL A . n A 1 126 LEU 126 500 500 LEU LEU A . n A 1 127 HIS 127 501 501 HIS HIS A . n A 1 128 PHE 128 502 502 PHE PHE A . n A 1 129 PHE 129 503 503 PHE PHE A . n A 1 130 ASN 130 504 504 ASN ASN A . n A 1 131 ALA 131 505 505 ALA ALA A . n A 1 132 PRO 132 506 506 PRO PRO A . n A 1 133 LEU 133 507 507 LEU LEU A . n A 1 134 GLU 134 508 508 GLU GLU A . n A 1 135 VAL 135 509 509 VAL VAL A . n A 1 136 THR 136 510 510 THR THR A . n A 1 137 GLU 137 511 511 GLU GLU A . n A 1 138 GLU 138 512 512 GLU GLU A . n A 1 139 ASN 139 513 513 ASN ASN A . n A 1 140 PHE 140 514 514 PHE PHE A . n A 1 141 PHE 141 515 515 PHE PHE A . n A 1 142 GLU 142 516 516 GLU GLU A . n A 1 143 ILE 143 517 517 ILE ILE A . n A 1 144 CYS 144 518 518 CYS CYS A . n A 1 145 ASP 145 519 519 ASP ASP A . n A 1 146 GLU 146 520 520 GLU GLU A . n A 1 147 LEU 147 521 521 LEU LEU A . n A 1 148 GLY 148 522 522 GLY GLY A . n A 1 149 VAL 149 523 523 VAL VAL A . n A 1 150 LYS 150 524 524 LYS LYS A . n A 1 151 ARG 151 525 525 ARG ARG A . n A 1 152 PRO 152 526 526 PRO PRO A . n A 1 153 THR 153 527 527 THR THR A . n A 1 154 SER 154 528 528 SER SER A . n A 1 155 VAL 155 529 529 VAL VAL A . n A 1 156 LYS 156 530 530 LYS LYS A . n A 1 157 VAL 157 531 531 VAL VAL A . n A 1 158 PHE 158 532 532 PHE PHE A . n A 1 159 SER 159 533 533 SER SER A . n A 1 160 GLY 160 534 534 GLY GLY A . n A 1 161 LYS 161 535 ? ? ? A . n A 1 162 SER 162 536 ? ? ? A . n A 1 163 GLU 163 537 ? ? ? A . n A 1 164 ARG 164 538 538 ARG ARG A . n A 1 165 SER 165 539 539 SER SER A . n A 1 166 SER 166 540 540 SER SER A . n A 1 167 SER 167 541 541 SER SER A . n A 1 168 GLY 168 542 542 GLY GLY A . n A 1 169 LEU 169 543 543 LEU LEU A . n A 1 170 LEU 170 544 544 LEU LEU A . n A 1 171 GLU 171 545 545 GLU GLU A . n A 1 172 TRP 172 546 546 TRP TRP A . n A 1 173 ASP 173 547 547 ASP ASP A . n A 1 174 SER 174 548 548 SER SER A . n A 1 175 LYS 175 549 549 LYS LYS A . n A 1 176 SER 176 550 550 SER SER A . n A 1 177 ASP 177 551 551 ASP ASP A . n A 1 178 ALA 178 552 552 ALA ALA A . n A 1 179 LEU 179 553 553 LEU LEU A . n A 1 180 GLU 180 554 554 GLU GLU A . n A 1 181 THR 181 555 555 THR THR A . n A 1 182 LEU 182 556 556 LEU LEU A . n A 1 183 GLY 183 557 557 GLY GLY A . n A 1 184 PHE 184 558 558 PHE PHE A . n A 1 185 LEU 185 559 559 LEU LEU A . n A 1 186 ASN 186 560 560 ASN ASN A . n A 1 187 HIS 187 561 561 HIS HIS A . n A 1 188 TYR 188 562 562 TYR TYR A . n A 1 189 GLN 189 563 563 GLN GLN A . n A 1 190 MSE 190 564 564 MSE MSE A . n A 1 191 LYS 191 565 565 LYS LYS A . n A 1 192 ASN 192 566 566 ASN ASN A . n A 1 193 PRO 193 567 567 PRO PRO A . n A 1 194 ASN 194 568 568 ASN ASN A . n A 1 195 GLY 195 569 569 GLY GLY A . n A 1 196 PRO 196 570 570 PRO PRO A . n A 1 197 TYR 197 571 571 TYR TYR A . n A 1 198 PRO 198 572 572 PRO PRO A . n A 1 199 TYR 199 573 573 TYR TYR A . n A 1 200 THR 200 574 574 THR THR A . n A 1 201 LEU 201 575 575 LEU LEU A . n A 1 202 LYS 202 576 576 LYS LYS A . n A 1 203 LEU 203 577 577 LEU LEU A . n A 1 204 CYS 204 578 578 CYS CYS A . n A 1 205 PHE 205 579 579 PHE PHE A . n A 1 206 SER 206 580 580 SER SER A . n A 1 207 THR 207 581 581 THR THR A . n A 1 208 ALA 208 582 582 ALA ALA A . n A 1 209 GLN 209 583 583 GLN GLN A . n A 1 210 HIS 210 584 584 HIS HIS A . n A 1 211 ALA 211 585 585 ALA ALA A . n A 1 212 SER 212 586 586 SER SER A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL PSI:Biology 'Partnership for T-Cell Biology' 3 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 600 600 GOL GOL A . C 3 IPA 1 601 601 IPA IPA A . D 3 IPA 1 602 602 IPA IPA A . E 4 HOH 1 603 603 HOH HOH A . E 4 HOH 2 604 604 HOH HOH A . E 4 HOH 3 605 605 HOH HOH A . E 4 HOH 4 606 606 HOH HOH A . E 4 HOH 5 607 607 HOH HOH A . E 4 HOH 6 608 608 HOH HOH A . E 4 HOH 7 609 609 HOH HOH A . E 4 HOH 8 610 610 HOH HOH A . E 4 HOH 9 611 611 HOH HOH A . E 4 HOH 10 612 612 HOH HOH A . E 4 HOH 11 613 613 HOH HOH A . E 4 HOH 12 614 614 HOH HOH A . E 4 HOH 13 615 615 HOH HOH A . E 4 HOH 14 616 616 HOH HOH A . E 4 HOH 15 617 617 HOH HOH A . E 4 HOH 16 618 618 HOH HOH A . E 4 HOH 17 619 619 HOH HOH A . E 4 HOH 18 620 620 HOH HOH A . E 4 HOH 19 621 621 HOH HOH A . E 4 HOH 20 622 622 HOH HOH A . E 4 HOH 21 623 623 HOH HOH A . E 4 HOH 22 624 624 HOH HOH A . E 4 HOH 23 625 625 HOH HOH A . E 4 HOH 24 626 626 HOH HOH A . E 4 HOH 25 627 627 HOH HOH A . E 4 HOH 26 628 628 HOH HOH A . E 4 HOH 27 629 629 HOH HOH A . E 4 HOH 28 630 630 HOH HOH A . E 4 HOH 29 631 631 HOH HOH A . E 4 HOH 30 632 632 HOH HOH A . E 4 HOH 31 633 633 HOH HOH A . E 4 HOH 32 634 634 HOH HOH A . E 4 HOH 33 635 635 HOH HOH A . E 4 HOH 34 636 636 HOH HOH A . E 4 HOH 35 637 637 HOH HOH A . E 4 HOH 36 638 638 HOH HOH A . E 4 HOH 37 639 639 HOH HOH A . E 4 HOH 38 640 640 HOH HOH A . E 4 HOH 39 641 641 HOH HOH A . E 4 HOH 40 642 642 HOH HOH A . E 4 HOH 41 643 643 HOH HOH A . E 4 HOH 42 644 644 HOH HOH A . E 4 HOH 43 645 645 HOH HOH A . E 4 HOH 44 646 646 HOH HOH A . E 4 HOH 45 647 647 HOH HOH A . E 4 HOH 46 648 648 HOH HOH A . E 4 HOH 47 649 649 HOH HOH A . E 4 HOH 48 650 650 HOH HOH A . E 4 HOH 49 651 651 HOH HOH A . E 4 HOH 50 652 652 HOH HOH A . E 4 HOH 51 653 653 HOH HOH A . E 4 HOH 52 654 654 HOH HOH A . E 4 HOH 53 655 655 HOH HOH A . E 4 HOH 54 656 656 HOH HOH A . E 4 HOH 55 657 657 HOH HOH A . E 4 HOH 56 658 658 HOH HOH A . E 4 HOH 57 659 659 HOH HOH A . E 4 HOH 58 660 660 HOH HOH A . E 4 HOH 59 661 661 HOH HOH A . E 4 HOH 60 662 662 HOH HOH A . E 4 HOH 61 663 663 HOH HOH A . E 4 HOH 62 664 664 HOH HOH A . E 4 HOH 63 665 665 HOH HOH A . E 4 HOH 64 666 666 HOH HOH A . E 4 HOH 65 667 667 HOH HOH A . E 4 HOH 66 668 668 HOH HOH A . E 4 HOH 67 669 669 HOH HOH A . E 4 HOH 68 670 670 HOH HOH A . E 4 HOH 69 671 671 HOH HOH A . E 4 HOH 70 672 672 HOH HOH A . E 4 HOH 71 673 673 HOH HOH A . E 4 HOH 72 674 674 HOH HOH A . E 4 HOH 73 675 675 HOH HOH A . E 4 HOH 74 676 676 HOH HOH A . E 4 HOH 75 677 677 HOH HOH A . E 4 HOH 76 678 678 HOH HOH A . E 4 HOH 77 679 679 HOH HOH A . E 4 HOH 78 680 680 HOH HOH A . E 4 HOH 79 681 681 HOH HOH A . E 4 HOH 80 682 682 HOH HOH A . E 4 HOH 81 683 683 HOH HOH A . E 4 HOH 82 684 684 HOH HOH A . E 4 HOH 83 685 685 HOH HOH A . E 4 HOH 84 686 686 HOH HOH A . E 4 HOH 85 687 687 HOH HOH A . E 4 HOH 86 688 688 HOH HOH A . E 4 HOH 87 689 689 HOH HOH A . E 4 HOH 88 690 690 HOH HOH A . E 4 HOH 89 691 691 HOH HOH A . E 4 HOH 90 692 692 HOH HOH A . E 4 HOH 91 693 693 HOH HOH A . E 4 HOH 92 694 694 HOH HOH A . E 4 HOH 93 695 695 HOH HOH A . E 4 HOH 94 696 696 HOH HOH A . E 4 HOH 95 697 697 HOH HOH A . E 4 HOH 96 698 698 HOH HOH A . E 4 HOH 97 699 699 HOH HOH A . E 4 HOH 98 700 700 HOH HOH A . E 4 HOH 99 701 701 HOH HOH A . E 4 HOH 100 702 702 HOH HOH A . E 4 HOH 101 703 703 HOH HOH A . E 4 HOH 102 704 704 HOH HOH A . E 4 HOH 103 705 705 HOH HOH A . E 4 HOH 104 706 706 HOH HOH A . E 4 HOH 105 707 707 HOH HOH A . E 4 HOH 106 708 708 HOH HOH A . E 4 HOH 107 709 709 HOH HOH A . E 4 HOH 108 710 710 HOH HOH A . E 4 HOH 109 711 711 HOH HOH A . E 4 HOH 110 712 712 HOH HOH A . E 4 HOH 111 713 713 HOH HOH A . E 4 HOH 112 714 714 HOH HOH A . E 4 HOH 113 715 715 HOH HOH A . E 4 HOH 114 716 716 HOH HOH A . E 4 HOH 115 717 717 HOH HOH A . E 4 HOH 116 718 718 HOH HOH A . E 4 HOH 117 719 719 HOH HOH A . E 4 HOH 118 720 720 HOH HOH A . E 4 HOH 119 721 721 HOH HOH A . E 4 HOH 120 722 722 HOH HOH A . E 4 HOH 121 723 723 HOH HOH A . E 4 HOH 122 724 724 HOH HOH A . E 4 HOH 123 725 725 HOH HOH A . E 4 HOH 124 726 726 HOH HOH A . E 4 HOH 125 727 727 HOH HOH A . E 4 HOH 126 728 728 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 382 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 391 ? MET SELENOMETHIONINE 3 A MSE 38 A MSE 412 ? MET SELENOMETHIONINE 4 A MSE 46 A MSE 420 ? MET SELENOMETHIONINE 5 A MSE 49 A MSE 423 ? MET SELENOMETHIONINE 6 A MSE 67 A MSE 441 ? MET SELENOMETHIONINE 7 A MSE 72 A MSE 446 ? MET SELENOMETHIONINE 8 A MSE 83 A MSE 457 ? MET SELENOMETHIONINE 9 A MSE 190 A MSE 564 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-08-10 4 'Structure model' 1 3 2015-10-21 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' software 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_struct_ref_seq_dif.details' 5 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -7.8905 _pdbx_refine_tls.origin_y 12.0963 _pdbx_refine_tls.origin_z 13.1495 _pdbx_refine_tls.T[1][1] -0.0453 _pdbx_refine_tls.T[2][2] -0.0579 _pdbx_refine_tls.T[3][3] -0.0703 _pdbx_refine_tls.T[1][2] -0.0086 _pdbx_refine_tls.T[1][3] 0.0133 _pdbx_refine_tls.T[2][3] 0.0045 _pdbx_refine_tls.L[1][1] 1.2298 _pdbx_refine_tls.L[2][2] 1.1848 _pdbx_refine_tls.L[3][3] 1.1019 _pdbx_refine_tls.L[1][2] -0.2601 _pdbx_refine_tls.L[1][3] -0.1619 _pdbx_refine_tls.L[2][3] 0.2012 _pdbx_refine_tls.S[1][1] -0.0338 _pdbx_refine_tls.S[2][2] -0.0019 _pdbx_refine_tls.S[3][3] 0.0358 _pdbx_refine_tls.S[1][2] 0.0594 _pdbx_refine_tls.S[1][3] 0.0116 _pdbx_refine_tls.S[2][3] -0.0371 _pdbx_refine_tls.S[2][1] -0.0632 _pdbx_refine_tls.S[3][1] -0.0606 _pdbx_refine_tls.S[3][2] -0.0740 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 586 _pdbx_refine_tls_group.selection_details '{ A|0 - A|586 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3S01 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 376-586 OF THE TARGET SEQUENCE. NUMBERING IS BASED ON THE UNIPROTKB Q8R081 VERSION 2 SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 504 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.75 _pdbx_validate_torsion.psi 30.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 377 ? CG ? A ASP 3 CG 2 1 Y 1 A ASP 377 ? OD1 ? A ASP 3 OD1 3 1 Y 1 A ASP 377 ? OD2 ? A ASP 3 OD2 4 1 Y 1 A LYS 415 ? CD ? A LYS 41 CD 5 1 Y 1 A LYS 415 ? CE ? A LYS 41 CE 6 1 Y 1 A LYS 415 ? NZ ? A LYS 41 NZ 7 1 Y 1 A GLN 460 ? CG ? A GLN 86 CG 8 1 Y 1 A GLN 460 ? CD ? A GLN 86 CD 9 1 Y 1 A GLN 460 ? OE1 ? A GLN 86 OE1 10 1 Y 1 A GLN 460 ? NE2 ? A GLN 86 NE2 11 1 Y 1 A LEU 507 ? CG ? A LEU 133 CG 12 1 Y 1 A LEU 507 ? CD1 ? A LEU 133 CD1 13 1 Y 1 A LEU 507 ? CD2 ? A LEU 133 CD2 14 1 Y 1 A GLU 512 ? CD ? A GLU 138 CD 15 1 Y 1 A GLU 512 ? OE1 ? A GLU 138 OE1 16 1 Y 1 A GLU 512 ? OE2 ? A GLU 138 OE2 17 1 Y 1 A ARG 538 ? CG ? A ARG 164 CG 18 1 Y 1 A ARG 538 ? CD ? A ARG 164 CD 19 1 Y 1 A ARG 538 ? NE ? A ARG 164 NE 20 1 Y 1 A ARG 538 ? CZ ? A ARG 164 CZ 21 1 Y 1 A ARG 538 ? NH1 ? A ARG 164 NH1 22 1 Y 1 A ARG 538 ? NH2 ? A ARG 164 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 535 ? A LYS 161 2 1 Y 1 A SER 536 ? A SER 162 3 1 Y 1 A GLU 537 ? A GLU 163 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'ISOPROPYL ALCOHOL' IPA 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #