data_3S49 # _entry.id 3S49 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S49 pdb_00003s49 10.2210/pdb3s49/pdb NDB NA1150 ? ? RCSB RCSB065741 ? ? WWPDB D_1000065741 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3S49 _pdbx_database_status.recvd_initial_deposition_date 2011-05-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Gan, J.' 2 'Sun, H.' 3 'Hassan, A.E.H.' 4 'Jiang, S.' 5 'Huang, Z.' 6 # _citation.id primary _citation.title 'Higher Specificity of RNA Base Pairing with 2-Selenouridine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheng, J.' 1 ? primary 'Gan, J.' 2 ? primary 'Sun, H.' 3 ? primary 'Hassan, A.E.H.' 4 ? primary 'Jiang, S.' 5 ? primary 'Huang, Z.' 6 ? # _cell.entry_id 3S49 _cell.length_a 47.095 _cell.length_b 47.095 _cell.length_c 424.655 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 126 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3S49 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3') ; 2574.506 7 ? ? ? 'short RNA with selenium modification' 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GUAUA(RUS)AC' _entity_poly.pdbx_seq_one_letter_code_can GUAUAXAC _entity_poly.pdbx_strand_id A,B,C,D,E,F,G _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 A n 1 4 U n 1 5 A n 1 6 RUS n 1 7 A n 1 8 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details '2-Se-U-phosphoramidite and solid phase synthesis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3S49 _struct_ref.pdbx_db_accession 3S49 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GUAUAXAC _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3S49 A 1 ? 8 ? 3S49 1 ? 8 ? 1 8 2 1 3S49 B 1 ? 8 ? 3S49 9 ? 16 ? 9 16 3 1 3S49 C 1 ? 8 ? 3S49 1 ? 8 ? 1 8 4 1 3S49 D 1 ? 8 ? 3S49 9 ? 16 ? 9 16 5 1 3S49 E 1 ? 8 ? 3S49 1 ? 8 ? 1 8 6 1 3S49 F 1 ? 8 ? 3S49 9 ? 16 ? 9 16 7 1 3S49 G 1 ? 8 ? 3S49 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 RUS 'RNA linking' n '1-(5-O-phosphono-beta-D-ribofuranosyl)-2-selanylpyrimidin-4(1H)-one' ? 'C9 H13 N2 O8 P Se' 387.142 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3S49 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;10% MPD, 40 mM Na Cacodylate (pH 7.0), 12mM Spermine Tetra-HCl, 80 mM Potassium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 1' _diffrn_detector.pdbx_collection_date 2010-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel-cut crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3S49 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.2 _reflns.number_obs 8288 _reflns.number_all 9870 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.5109 _reflns.pdbx_netI_over_sigmaI 22 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 18.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_Rsym_value ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.89 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 10.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 959 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3S49 _refine.ls_number_reflns_obs 8206 _refine.ls_number_reflns_all 8288 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.44 _refine.ls_R_factor_obs 0.21730 _refine.ls_R_factor_R_work 0.21484 _refine.ls_R_factor_R_free 0.26977 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 421 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.B_iso_mean 50.531 _refine.aniso_B[1][1] 2.01 _refine.aniso_B[2][2] 2.01 _refine.aniso_B[3][3] -3.02 _refine.aniso_B[1][2] 1.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 246D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.245 _refine.overall_SU_ML 0.174 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.327 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3S49 _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.174 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.245 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1162 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1236 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.021 ? 1295 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.169 3.000 ? 2002 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.053 0.200 ? 273 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.004 0.020 ? 567 ? 'X-RAY DIFFRACTION' r_nbd_refined 0.142 0.200 ? 491 ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.262 0.200 ? 824 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.120 0.200 ? 54 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.157 0.200 ? 53 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.125 0.200 ? 19 ? 'X-RAY DIFFRACTION' r_scbond_it 0.729 3.000 ? 1358 ? 'X-RAY DIFFRACTION' r_scangle_it 1.012 4.500 ? 2002 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 606 _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_obs 99.84 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S49 _struct.title 'RNA crystal structure with 2-Se-uridine modification' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S49 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, 2-Se-uridine' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 5 "O3'" ? ? ? 1_555 A RUS 6 P ? ? A A 5 A RUS 6 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? B A 5 "O3'" ? ? ? 1_555 B RUS 6 P ? ? B A 13 B RUS 14 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? C A 5 "O3'" ? ? ? 1_555 C RUS 6 P ? ? C A 5 C RUS 6 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale both ? D A 5 "O3'" ? ? ? 1_555 D RUS 6 P ? ? D A 13 D RUS 14 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale5 covale both ? E A 5 "O3'" ? ? ? 1_555 E RUS 6 P ? ? E A 5 E RUS 6 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale6 covale both ? F A 5 "O3'" ? ? ? 1_555 F RUS 6 P ? ? F A 13 F RUS 14 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale7 covale both ? G A 5 "O3'" ? ? ? 1_555 G RUS 6 P ? ? G A 5 G RUS 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? I K . K ? ? ? 1_555 P HOH . O ? ? E K 9 F HOH 131 1_555 ? ? ? ? ? ? ? 3.427 ? ? metalc2 metalc ? ? J K . K ? ? ? 1_555 F A 5 OP1 ? ? F K 2 F A 13 1_555 ? ? ? ? ? ? ? 3.380 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 2 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 4 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 4 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 7 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 7 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 7 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 7 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 8 N3 ? ? C G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 8 O2 ? ? C G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 8 N4 ? ? C G 1 D C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 2 D A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C U 2 O4 ? ? ? 1_555 D A 7 N6 ? ? C U 2 D A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C U 4 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 4 D A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C U 4 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 4 D A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 4 N3 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 4 O4 ? ? C A 5 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C A 7 N1 ? ? ? 1_555 D U 2 N3 ? ? C A 7 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C A 7 N6 ? ? ? 1_555 D U 2 O4 ? ? C A 7 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 8 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? E G 1 N1 ? ? ? 1_555 F C 8 N3 ? ? E G 1 F C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? E G 1 N2 ? ? ? 1_555 F C 8 O2 ? ? E G 1 F C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? E G 1 O6 ? ? ? 1_555 F C 8 N4 ? ? E G 1 F C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E U 2 N3 ? ? ? 1_555 F A 7 N1 ? ? E U 2 F A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E U 2 O4 ? ? ? 1_555 F A 7 N6 ? ? E U 2 F A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E U 4 N3 ? ? ? 1_555 F A 5 N1 ? ? E U 4 F A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E U 4 O4 ? ? ? 1_555 F A 5 N6 ? ? E U 4 F A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E A 5 N1 ? ? ? 1_555 F U 4 N3 ? ? E A 5 F U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E A 5 N6 ? ? ? 1_555 F U 4 O4 ? ? E A 5 F U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E A 7 N1 ? ? ? 1_555 F U 2 N3 ? ? E A 7 F U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E A 7 N6 ? ? ? 1_555 F U 2 O4 ? ? E A 7 F U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E C 8 N3 ? ? ? 1_555 F G 1 N1 ? ? E C 8 F G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E C 8 N4 ? ? ? 1_555 F G 1 O6 ? ? E C 8 F G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E C 8 O2 ? ? ? 1_555 F G 1 N2 ? ? E C 8 F G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? G G 1 N1 ? ? ? 1_555 G C 8 N3 ? ? G G 1 G C 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? G G 1 N2 ? ? ? 1_555 G C 8 O2 ? ? G G 1 G C 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? G G 1 O6 ? ? ? 1_555 G C 8 N4 ? ? G G 1 G C 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? G U 2 N3 ? ? ? 1_555 G A 7 N1 ? ? G U 2 G A 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? G U 2 O4 ? ? ? 1_555 G A 7 N6 ? ? G U 2 G A 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? G U 4 N3 ? ? ? 1_555 G A 5 N1 ? ? G U 4 G A 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? G U 4 O4 ? ? ? 1_555 G A 5 N6 ? ? G U 4 G A 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? G A 5 N1 ? ? ? 1_555 G U 4 N3 ? ? G A 5 G U 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? G A 5 N6 ? ? ? 1_555 G U 4 O4 ? ? G A 5 G U 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? G A 7 N1 ? ? ? 1_555 G U 2 N3 ? ? G A 7 G U 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? G A 7 N6 ? ? ? 1_555 G U 2 O4 ? ? G A 7 G U 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? G C 8 N3 ? ? ? 1_555 G G 1 N1 ? ? G C 8 G G 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? G C 8 N4 ? ? ? 1_555 G G 1 O6 ? ? G C 8 G G 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? G C 8 O2 ? ? ? 1_555 G G 1 N2 ? ? G C 8 G G 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id F _struct_site.pdbx_auth_comp_id K _struct_site.pdbx_auth_seq_id 2 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE K F 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 A F 5 ? A F 13 . ? 1_555 ? 2 AC1 3 A F 5 ? A F 13 . ? 3_565 ? 3 AC1 3 A F 5 ? A F 13 . ? 2_665 ? # _database_PDB_matrix.entry_id 3S49 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3S49 _atom_sites.fract_transf_matrix[1][1] 0.021234 _atom_sites.fract_transf_matrix[1][2] 0.012259 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024519 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 A 5 5 5 A A A . n A 1 6 RUS 6 6 6 RUS RUS A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n B 1 1 G 1 9 9 G G B . n B 1 2 U 2 10 10 U U B . n B 1 3 A 3 11 11 A A B . n B 1 4 U 4 12 12 U U B . n B 1 5 A 5 13 13 A A B . n B 1 6 RUS 6 14 14 RUS RUS B . n B 1 7 A 7 15 15 A A B . n B 1 8 C 8 16 16 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 U 2 2 2 U U C . n C 1 3 A 3 3 3 A A C . n C 1 4 U 4 4 4 U U C . n C 1 5 A 5 5 5 A A C . n C 1 6 RUS 6 6 6 RUS RUS C . n C 1 7 A 7 7 7 A A C . n C 1 8 C 8 8 8 C C C . n D 1 1 G 1 9 9 G G D . n D 1 2 U 2 10 10 U U D . n D 1 3 A 3 11 11 A A D . n D 1 4 U 4 12 12 U U D . n D 1 5 A 5 13 13 A A D . n D 1 6 RUS 6 14 14 RUS RUS D . n D 1 7 A 7 15 15 A A D . n D 1 8 C 8 16 16 C C D . n E 1 1 G 1 1 1 G G E . n E 1 2 U 2 2 2 U U E . n E 1 3 A 3 3 3 A A E . n E 1 4 U 4 4 4 U U E . n E 1 5 A 5 5 5 A A E . n E 1 6 RUS 6 6 6 RUS RUS E . n E 1 7 A 7 7 7 A A E . n E 1 8 C 8 8 8 C C E . n F 1 1 G 1 9 9 G G F . n F 1 2 U 2 10 10 U U F . n F 1 3 A 3 11 11 A A F . n F 1 4 U 4 12 12 U U F . n F 1 5 A 5 13 13 A A F . n F 1 6 RUS 6 14 14 RUS RUS F . n F 1 7 A 7 15 15 A A F . n F 1 8 C 8 16 16 C C F . n G 1 1 G 1 1 1 G G G . n G 1 2 U 2 2 2 U U G . n G 1 3 A 3 3 3 A A G . n G 1 4 U 4 4 4 U U G . n G 1 5 A 5 5 5 A A G . n G 1 6 RUS 6 6 6 RUS RUS G . n G 1 7 A 7 7 7 A A G . n G 1 8 C 8 8 8 C C G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 K 1 9 1 K K C . I 2 K 1 9 3 K K E . J 2 K 1 2 2 K K F . K 3 HOH 1 18 18 HOH HOH A . K 3 HOH 2 21 21 HOH HOH A . K 3 HOH 3 22 22 HOH HOH A . K 3 HOH 4 42 42 HOH HOH A . K 3 HOH 5 59 59 HOH HOH A . K 3 HOH 6 78 78 HOH HOH A . K 3 HOH 7 80 80 HOH HOH A . K 3 HOH 8 115 115 HOH HOH A . L 3 HOH 1 33 33 HOH HOH B . L 3 HOH 2 52 52 HOH HOH B . L 3 HOH 3 54 54 HOH HOH B . L 3 HOH 4 79 79 HOH HOH B . L 3 HOH 5 129 129 HOH HOH B . M 3 HOH 1 10 3 HOH HOH C . M 3 HOH 2 12 12 HOH HOH C . M 3 HOH 3 15 15 HOH HOH C . M 3 HOH 4 17 17 HOH HOH C . M 3 HOH 5 19 19 HOH HOH C . M 3 HOH 6 35 35 HOH HOH C . M 3 HOH 7 39 39 HOH HOH C . M 3 HOH 8 40 40 HOH HOH C . M 3 HOH 9 75 75 HOH HOH C . M 3 HOH 10 81 81 HOH HOH C . M 3 HOH 11 93 93 HOH HOH C . M 3 HOH 12 95 95 HOH HOH C . M 3 HOH 13 111 111 HOH HOH C . M 3 HOH 14 122 122 HOH HOH C . N 3 HOH 1 1 1 HOH HOH D . N 3 HOH 2 8 8 HOH HOH D . N 3 HOH 3 17 9 HOH HOH D . N 3 HOH 4 18 16 HOH HOH D . N 3 HOH 5 20 20 HOH HOH D . N 3 HOH 6 38 38 HOH HOH D . N 3 HOH 7 55 55 HOH HOH D . N 3 HOH 8 58 58 HOH HOH D . N 3 HOH 9 67 67 HOH HOH D . N 3 HOH 10 68 68 HOH HOH D . N 3 HOH 11 69 69 HOH HOH D . N 3 HOH 12 70 70 HOH HOH D . N 3 HOH 13 72 72 HOH HOH D . N 3 HOH 14 73 73 HOH HOH D . N 3 HOH 15 82 82 HOH HOH D . N 3 HOH 16 84 84 HOH HOH D . N 3 HOH 17 112 112 HOH HOH D . N 3 HOH 18 116 116 HOH HOH D . O 3 HOH 1 10 10 HOH HOH E . O 3 HOH 2 14 14 HOH HOH E . O 3 HOH 3 43 43 HOH HOH E . O 3 HOH 4 51 51 HOH HOH E . O 3 HOH 5 60 60 HOH HOH E . O 3 HOH 6 86 86 HOH HOH E . O 3 HOH 7 87 87 HOH HOH E . O 3 HOH 8 99 99 HOH HOH E . O 3 HOH 9 103 103 HOH HOH E . O 3 HOH 10 126 126 HOH HOH E . P 3 HOH 1 7 7 HOH HOH F . P 3 HOH 2 17 2 HOH HOH F . P 3 HOH 3 18 11 HOH HOH F . P 3 HOH 4 30 30 HOH HOH F . P 3 HOH 5 36 36 HOH HOH F . P 3 HOH 6 44 44 HOH HOH F . P 3 HOH 7 53 53 HOH HOH F . P 3 HOH 8 76 76 HOH HOH F . P 3 HOH 9 77 77 HOH HOH F . P 3 HOH 10 89 89 HOH HOH F . P 3 HOH 11 98 98 HOH HOH F . P 3 HOH 12 113 113 HOH HOH F . P 3 HOH 13 117 117 HOH HOH F . P 3 HOH 14 131 131 HOH HOH F . Q 3 HOH 1 41 41 HOH HOH G . Q 3 HOH 2 120 120 HOH HOH G . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A RUS 6 A RUS 6 ? U ? 2 B RUS 6 B RUS 14 ? U ? 3 C RUS 6 C RUS 6 ? U ? 4 D RUS 6 D RUS 14 ? U ? 5 E RUS 6 E RUS 6 ? U ? 6 F RUS 6 F RUS 14 ? U ? 7 G RUS 6 G RUS 6 ? U ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 4 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,K,L 2 1 C,D,H,M,N 3 1 E,F,I,J,O,P 4 1,2 G,Q # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 23.5475000000 -0.8660254038 0.5000000000 0.0000000000 13.5951554637 0.0000000000 0.0000000000 -1.0000000000 141.5516666667 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 C K 9 ? H K . 2 1 F K 2 ? J K . 3 1 A HOH 21 ? K HOH . 4 1 A HOH 42 ? K HOH . 5 1 C HOH 10 ? M HOH . 6 1 C HOH 93 ? M HOH . 7 1 D HOH 18 ? N HOH . 8 1 D HOH 84 ? N HOH . 9 1 E HOH 14 ? O HOH . 10 1 F HOH 18 ? P HOH . 11 1 F HOH 131 ? P HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_special_symmetry 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_conn_type 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 13.2733 14.0425 7.9370 -0.0923 0.0333 -0.0270 -0.0135 -0.0144 0.0993 2.7303 4.7287 0.6036 -1.2773 1.2462 -0.2039 0.3918 0.1433 -0.1266 -0.3013 0.2902 0.2215 -0.0771 -0.8166 -0.6820 'X-RAY DIFFRACTION' 2 ? refined 12.6887 10.3080 12.0779 -0.2136 -0.1323 -0.0175 0.0201 -0.0559 0.1753 6.1868 2.9084 12.4488 3.2519 4.6571 2.9793 0.4692 -0.4684 -0.3901 0.1424 0.1776 0.4591 0.4488 -0.9091 -0.6468 'X-RAY DIFFRACTION' 3 ? refined 1.0883 12.4919 32.3518 -0.0195 -0.1101 -0.0566 -0.0338 0.0987 -0.0314 2.4668 1.0167 3.1135 1.1165 -0.1716 -0.3309 0.4957 -0.2034 0.4343 0.4124 -0.1636 0.2315 -0.5235 0.2837 -0.3321 'X-RAY DIFFRACTION' 4 ? refined 2.7820 9.3647 28.2688 -0.0188 -0.0583 -0.0428 -0.0367 0.0559 0.0296 2.8828 2.6032 0.8608 -0.8505 -1.4130 1.0460 0.1876 0.2463 0.3291 0.0998 0.2351 0.0061 0.0151 0.0751 -0.4227 'X-RAY DIFFRACTION' 5 ? refined 8.5202 17.8838 53.0478 -0.0228 -0.0618 -0.1025 0.0792 -0.1177 -0.0512 0.6154 2.8128 7.6197 -0.8598 -0.6577 2.0769 0.0337 -0.2032 -0.1771 0.5533 0.3929 -0.3010 0.5811 0.3231 -0.4266 'X-RAY DIFFRACTION' 6 ? refined 5.0811 18.8752 49.0120 -0.0726 -0.1418 -0.1083 0.0101 -0.0825 -0.0711 4.7465 2.1977 6.6472 -1.6609 -0.1501 0.9313 -0.0886 -0.0768 -0.2879 0.2989 0.4707 -0.4116 0.4584 -0.0613 -0.3821 'X-RAY DIFFRACTION' 7 ? refined 8.4796 9.8632 73.2859 0.7177 0.0064 0.0253 0.3474 -0.2986 -0.0583 10.2321 4.6063 16.4623 2.3248 5.8636 3.9234 1.3394 0.0766 -1.2797 0.4680 0.4988 -0.1637 2.6977 0.4792 -1.8381 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 8 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 9 ? ? B 16 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 ? ? C 8 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 9 ? ? D 16 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 1 ? ? E 8 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 9 ? ? F 16 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 G 1 ? ? G 8 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASES phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 F _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 16 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 F _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 F _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.60 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 5.10 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 RUS P P N N 115 RUS N1 N N N 116 RUS C2 C N N 117 RUS SE2 SE N N 118 RUS N3 N N N 119 RUS C4 C N N 120 RUS O4 O N N 121 RUS C5 C N N 122 RUS C6 C N N 123 RUS "C1'" C N R 124 RUS O1P O N N 125 RUS "C2'" C N R 126 RUS "O2'" O N N 127 RUS O2P O N N 128 RUS "C3'" C N S 129 RUS "O3'" O N N 130 RUS O3P O N N 131 RUS "C4'" C N R 132 RUS "O4'" O N N 133 RUS "C5'" C N N 134 RUS "O5'" O N N 135 RUS H5 H N N 136 RUS H6 H N N 137 RUS "H1'" H N N 138 RUS "H2'" H N N 139 RUS "HO2'" H N N 140 RUS HO2P H N N 141 RUS "H3'" H N N 142 RUS "HO3'" H N N 143 RUS HO3P H N N 144 RUS "H4'" H N N 145 RUS "H5'" H N N 146 RUS "H5'A" H N N 147 RUS HSE2 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 RUS O1P P doub N N 118 RUS O2P P sing N N 119 RUS P "O5'" sing N N 120 RUS P O3P sing N N 121 RUS C6 N1 sing N N 122 RUS "C1'" N1 sing N N 123 RUS N1 C2 sing N N 124 RUS C2 N3 doub N N 125 RUS C2 SE2 sing N N 126 RUS C4 N3 sing N N 127 RUS C5 C4 sing N N 128 RUS C4 O4 doub N N 129 RUS C6 C5 doub N N 130 RUS C5 H5 sing N N 131 RUS C6 H6 sing N N 132 RUS "C2'" "C1'" sing N N 133 RUS "C1'" "O4'" sing N N 134 RUS "C1'" "H1'" sing N N 135 RUS "C3'" "C2'" sing N N 136 RUS "C2'" "O2'" sing N N 137 RUS "C2'" "H2'" sing N N 138 RUS "O2'" "HO2'" sing N N 139 RUS O2P HO2P sing N N 140 RUS "O3'" "C3'" sing N N 141 RUS "C3'" "C4'" sing N N 142 RUS "C3'" "H3'" sing N N 143 RUS "O3'" "HO3'" sing N N 144 RUS O3P HO3P sing N N 145 RUS "C5'" "C4'" sing N N 146 RUS "C4'" "O4'" sing N N 147 RUS "C4'" "H4'" sing N N 148 RUS "C5'" "O5'" sing N N 149 RUS "C5'" "H5'" sing N N 150 RUS "C5'" "H5'A" sing N N 151 RUS SE2 HSE2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3S49 'double helix' 3S49 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 A C 8 1_555 -0.509 -0.005 0.045 -7.415 -10.260 5.461 1 B_G9:C8_A B 9 ? A 8 ? 19 1 1 B U 2 1_555 A A 7 1_555 -0.141 -0.136 0.297 -1.540 -10.942 0.529 2 B_U10:A7_A B 10 ? A 7 ? 20 1 1 B U 4 1_555 A A 5 1_555 -0.071 -0.092 0.371 1.738 -14.572 6.828 3 B_U12:A5_A B 12 ? A 5 ? 20 1 1 B A 5 1_555 A U 4 1_555 0.046 -0.194 0.031 2.045 -13.230 3.190 4 B_A13:U4_A B 13 ? A 4 ? 20 1 1 B A 7 1_555 A U 2 1_555 -0.418 -0.244 0.106 -4.936 -10.364 1.556 5 B_A15:U2_A B 15 ? A 2 ? 20 1 1 B C 8 1_555 A G 1 1_555 0.152 -0.126 0.088 3.722 -8.506 3.132 6 B_C16:G1_A B 16 ? A 1 ? 19 1 1 C G 1 1_555 D C 8 1_555 -0.512 -0.088 0.191 -4.477 -7.414 2.728 7 C_G1:C16_D C 1 ? D 16 ? 19 1 1 C U 2 1_555 D A 7 1_555 -0.014 -0.142 0.103 -0.641 -12.782 -1.127 8 C_U2:A15_D C 2 ? D 15 ? 20 1 1 C U 4 1_555 D A 5 1_555 -0.135 -0.103 0.033 4.084 -12.145 -1.504 9 C_U4:A13_D C 4 ? D 13 ? 20 1 1 C A 5 1_555 D U 4 1_555 -0.171 -0.093 0.260 0.084 -20.255 5.016 10 C_A5:U12_D C 5 ? D 12 ? 20 1 1 C A 7 1_555 D U 2 1_555 0.057 -0.061 0.050 -1.693 -12.213 0.164 11 C_A7:U10_D C 7 ? D 10 ? 20 1 1 C C 8 1_555 D G 1 1_555 0.470 -0.112 0.115 5.763 -9.643 1.099 12 C_C8:G9_D C 8 ? D 9 ? 19 1 1 E G 1 1_555 F C 8 1_555 -0.397 -0.052 0.140 -5.349 -13.743 3.358 13 E_G1:C16_F E 1 ? F 16 ? 19 1 1 E U 2 1_555 F A 7 1_555 -0.297 -0.143 0.398 -4.230 -14.460 -0.117 14 E_U2:A15_F E 2 ? F 15 ? 20 1 1 E U 4 1_555 F A 5 1_555 0.190 -0.072 0.006 4.370 -14.256 0.083 15 E_U4:A13_F E 4 ? F 13 ? 20 1 1 E A 5 1_555 F U 4 1_555 -0.144 -0.054 0.111 -0.712 -18.337 5.552 16 E_A5:U12_F E 5 ? F 12 ? 20 1 1 E A 7 1_555 F U 2 1_555 0.055 -0.158 0.288 1.810 -15.180 1.312 17 E_A7:U10_F E 7 ? F 10 ? 20 1 1 E C 8 1_555 F G 1 1_555 0.529 -0.143 0.019 8.528 -11.341 0.310 18 E_C8:G9_F E 8 ? F 9 ? 19 1 1 G G 1 1_555 G C 8 12_555 -0.932 -0.230 -0.040 -7.264 -15.272 3.563 19 G_G1:C8_G G 1 ? G 8 ? 19 1 1 G U 2 1_555 G A 7 12_555 0.189 -0.141 0.103 -1.990 -17.047 0.141 20 G_U2:A7_G G 2 ? G 7 ? 20 1 1 G U 4 1_555 G A 5 12_555 0.192 -0.299 0.542 -4.604 -16.133 -0.362 21 G_U4:A5_G G 4 ? G 5 ? 20 1 1 G A 5 1_555 G U 4 12_555 -0.192 -0.299 0.542 4.604 -16.133 -0.362 22 G_A5:U4_G G 5 ? G 4 ? 20 1 1 G A 7 1_555 G U 2 12_555 -0.189 -0.141 0.103 1.990 -17.047 0.141 23 G_A7:U2_G G 7 ? G 2 ? 20 1 1 G C 8 1_555 G G 1 12_555 0.932 -0.230 -0.040 7.264 -15.272 3.563 24 G_C8:G1_G G 8 ? G 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 A C 8 1_555 B U 2 1_555 A A 7 1_555 -0.557 -1.474 3.092 -3.856 4.128 33.019 -3.190 0.377 2.935 7.197 6.723 33.485 1 BB_G9U10:A7C8_AA B 9 ? A 8 ? B 10 ? A 7 ? 1 B U 2 1_555 A A 7 1_555 B U 4 1_555 A A 5 1_555 0.617 -2.492 6.051 0.599 12.052 64.835 -3.171 -0.524 5.568 11.140 -0.554 65.828 2 BB_U10U12:A5A7_AA B 10 ? A 7 ? B 12 ? A 5 ? 1 B U 4 1_555 A A 5 1_555 B A 5 1_555 A U 4 1_555 -0.481 -1.376 2.997 0.931 14.987 33.125 -3.953 0.881 2.179 24.766 -1.539 36.282 3 BB_U12A13:U4A5_AA B 12 ? A 5 ? B 13 ? A 4 ? 1 B A 5 1_555 A U 4 1_555 B A 7 1_555 A U 2 1_555 0.277 -3.174 6.277 -0.247 22.361 61.886 -4.581 -0.274 4.995 21.026 0.232 65.424 4 BB_A13A15:U2U4_AA B 13 ? A 4 ? B 15 ? A 2 ? 1 B A 7 1_555 A U 2 1_555 B C 8 1_555 A G 1 1_555 0.314 -1.862 3.107 0.989 1.060 31.566 -3.604 -0.404 3.053 1.947 -1.817 31.599 5 BB_A15C16:G1U2_AA B 15 ? A 2 ? B 16 ? A 1 ? 1 B C 8 1_555 A G 1 1_555 C G 1 1_555 D C 8 1_555 -0.068 -3.930 3.474 -0.109 5.425 -17.443 8.606 -0.291 4.478 -17.353 -0.347 -18.261 6 BC_C16G1:C16G1_DA B 16 ? A 1 ? C 1 ? D 16 ? 1 C G 1 1_555 D C 8 1_555 C U 2 1_555 D A 7 1_555 -0.572 -1.609 3.269 0.096 1.266 32.380 -3.104 1.041 3.204 2.269 -0.172 32.405 7 CC_G1U2:A15C16_DD C 1 ? D 16 ? C 2 ? D 15 ? 1 C U 2 1_555 D A 7 1_555 C U 4 1_555 D A 5 1_555 -0.141 -2.363 6.152 0.007 15.006 65.221 -3.223 0.128 5.555 13.733 -0.007 66.738 8 CC_U2U4:A13A15_DD C 2 ? D 15 ? C 4 ? D 13 ? 1 C U 4 1_555 D A 5 1_555 C A 5 1_555 D U 4 1_555 0.726 -1.424 3.168 0.087 12.294 33.874 -3.877 -1.165 2.519 20.289 -0.143 35.975 9 CC_U4A5:U12A13_DD C 4 ? D 13 ? C 5 ? D 12 ? 1 C A 5 1_555 D U 4 1_555 C A 7 1_555 D U 2 1_555 -0.760 -2.373 5.999 -1.433 24.821 65.361 -3.650 0.577 4.948 22.171 1.280 69.437 10 CC_A5A7:U10U12_DD C 5 ? D 12 ? C 7 ? D 10 ? 1 C A 7 1_555 D U 2 1_555 C C 8 1_555 D G 1 1_555 0.629 -1.491 3.117 0.785 0.697 35.157 -2.566 -0.930 3.100 1.154 -1.299 35.173 11 CC_A7C8:G9U10_DD C 7 ? D 10 ? C 8 ? D 9 ? 1 C C 8 1_555 D G 1 1_555 E G 1 1_555 F C 8 1_555 0.106 -3.873 3.470 1.143 10.669 -12.419 2.462 1.564 5.135 -40.732 4.363 -16.399 12 CE_C8G1:C16G9_FD C 8 ? D 9 ? E 1 ? F 16 ? 1 E G 1 1_555 F C 8 1_555 E U 2 1_555 F A 7 1_555 -0.640 -1.527 3.243 -4.003 0.472 33.013 -2.747 0.450 3.274 0.826 7.012 33.251 13 EE_G1U2:A15C16_FF E 1 ? F 16 ? E 2 ? F 15 ? 1 E U 2 1_555 F A 7 1_555 E U 4 1_555 F A 5 1_555 -0.151 -2.397 6.009 2.067 12.361 65.547 -3.055 0.283 5.525 11.310 -1.891 66.603 14 EE_U2U4:A13A15_FF E 2 ? F 15 ? E 4 ? F 13 ? 1 E U 4 1_555 F A 5 1_555 E A 5 1_555 F U 4 1_555 0.583 -1.360 3.231 -0.897 12.660 33.316 -3.911 -1.073 2.547 21.151 1.499 35.587 15 EE_U4A5:U12A13_FF E 4 ? F 13 ? E 5 ? F 12 ? 1 E A 5 1_555 F U 4 1_555 E A 7 1_555 F U 2 1_555 -0.638 -2.261 5.902 -3.305 23.233 63.947 -3.561 0.355 4.947 21.203 3.016 67.686 16 EE_A5A7:U10U12_FF E 5 ? F 12 ? E 7 ? F 10 ? 1 E A 7 1_555 F U 2 1_555 E C 8 1_555 F G 1 1_555 0.412 -1.510 3.069 2.974 3.031 36.300 -2.795 -0.277 2.961 4.845 -4.753 36.539 17 EE_A7C8:G9U10_FF E 7 ? F 10 ? E 8 ? F 9 ? 1 G G 1 1_555 G C 8 12_555 G U 2 1_555 G A 7 12_555 -0.714 -1.255 3.176 -3.147 1.318 38.414 -2.060 0.702 3.180 1.998 4.772 38.560 18 GG_G1U2:A7C8_GG G 1 ? G 8 ? G 2 ? G 7 ? 1 G U 2 1_555 G A 7 12_555 G U 4 1_555 G A 5 12_555 -0.107 -2.575 6.170 -1.789 21.647 64.193 -3.818 -0.027 5.174 19.786 1.635 67.395 19 GG_U2U4:A5A7_GG G 2 ? G 7 ? G 4 ? G 5 ? 1 G U 4 1_555 G A 5 12_555 G A 5 1_555 G U 4 12_555 0.000 -1.766 2.764 0.000 11.851 31.435 -4.523 0.000 1.986 20.964 0.000 33.542 20 GG_U4A5:U4A5_GG G 4 ? G 5 ? G 5 ? G 4 ? 1 G A 5 1_555 G U 4 12_555 G A 7 1_555 G U 2 12_555 0.107 -2.575 6.170 1.789 21.647 64.193 -3.818 0.027 5.174 19.786 -1.635 67.395 21 GG_A5A7:U2U4_GG G 5 ? G 4 ? G 7 ? G 2 ? 1 G A 7 1_555 G U 2 12_555 G C 8 1_555 G G 1 12_555 0.714 -1.255 3.176 3.147 1.318 38.414 -2.060 -0.702 3.180 1.998 -4.772 38.560 22 GG_A7C8:G1U2_GG G 7 ? G 2 ? G 8 ? G 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 246D _pdbx_initial_refinement_model.details 'PDB entry 246D' #