HEADER RNA 19-MAY-11 3S49 TITLE RNA CRYSTAL STRUCTURE WITH 2-SE-URIDINE MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3'); COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SHORT RNA WITH SELENIUM MODIFICATION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: 2-SE-U-PHOSPHORAMIDITE AND SOLID PHASE SYNTHESIS KEYWDS RNA, 2-SE-URIDINE EXPDTA X-RAY DIFFRACTION AUTHOR J.SHENG,J.GAN,H.SUN,A.E.H.HASSAN,S.JIANG,Z.HUANG REVDAT 2 13-SEP-23 3S49 1 REMARK LINK REVDAT 1 29-JUN-11 3S49 0 JRNL AUTH J.SHENG,J.GAN,H.SUN,A.E.H.HASSAN,S.JIANG,Z.HUANG JRNL TITL HIGHER SPECIFICITY OF RNA BASE PAIRING WITH 2-SELENOURIDINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 8206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1162 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -3.02000 REMARK 3 B12 (A**2) : 1.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1295 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2002 ; 1.169 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 567 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 491 ; 0.142 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 824 ; 0.262 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.125 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 0.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2002 ; 1.012 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2733 14.0425 7.9370 REMARK 3 T TENSOR REMARK 3 T11: -0.0923 T22: 0.0333 REMARK 3 T33: -0.0270 T12: -0.0135 REMARK 3 T13: -0.0144 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 2.7303 L22: 4.7287 REMARK 3 L33: 0.6036 L12: -1.2773 REMARK 3 L13: 1.2462 L23: -0.2039 REMARK 3 S TENSOR REMARK 3 S11: 0.3918 S12: 0.1433 S13: -0.1266 REMARK 3 S21: -0.3013 S22: 0.2902 S23: 0.2215 REMARK 3 S31: -0.0771 S32: -0.8166 S33: -0.6820 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6887 10.3080 12.0779 REMARK 3 T TENSOR REMARK 3 T11: -0.2136 T22: -0.1323 REMARK 3 T33: -0.0175 T12: 0.0201 REMARK 3 T13: -0.0559 T23: 0.1753 REMARK 3 L TENSOR REMARK 3 L11: 6.1868 L22: 2.9084 REMARK 3 L33: 12.4488 L12: 3.2519 REMARK 3 L13: 4.6571 L23: 2.9793 REMARK 3 S TENSOR REMARK 3 S11: 0.4692 S12: -0.4684 S13: -0.3901 REMARK 3 S21: 0.1424 S22: 0.1776 S23: 0.4591 REMARK 3 S31: 0.4488 S32: -0.9091 S33: -0.6468 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0883 12.4919 32.3518 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.1101 REMARK 3 T33: -0.0566 T12: -0.0338 REMARK 3 T13: 0.0987 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.4668 L22: 1.0167 REMARK 3 L33: 3.1135 L12: 1.1165 REMARK 3 L13: -0.1716 L23: -0.3309 REMARK 3 S TENSOR REMARK 3 S11: 0.4957 S12: -0.2034 S13: 0.4343 REMARK 3 S21: 0.4124 S22: -0.1636 S23: 0.2315 REMARK 3 S31: -0.5235 S32: 0.2837 S33: -0.3321 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 9 D 16 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7820 9.3647 28.2688 REMARK 3 T TENSOR REMARK 3 T11: -0.0188 T22: -0.0583 REMARK 3 T33: -0.0428 T12: -0.0367 REMARK 3 T13: 0.0559 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.8828 L22: 2.6032 REMARK 3 L33: 0.8608 L12: -0.8505 REMARK 3 L13: -1.4130 L23: 1.0460 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: 0.2463 S13: 0.3291 REMARK 3 S21: 0.0998 S22: 0.2351 S23: 0.0061 REMARK 3 S31: 0.0151 S32: 0.0751 S33: -0.4227 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 8 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5202 17.8838 53.0478 REMARK 3 T TENSOR REMARK 3 T11: -0.0228 T22: -0.0618 REMARK 3 T33: -0.1025 T12: 0.0792 REMARK 3 T13: -0.1177 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.6154 L22: 2.8128 REMARK 3 L33: 7.6197 L12: -0.8598 REMARK 3 L13: -0.6577 L23: 2.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.2032 S13: -0.1771 REMARK 3 S21: 0.5533 S22: 0.3929 S23: -0.3010 REMARK 3 S31: 0.5811 S32: 0.3231 S33: -0.4266 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 9 F 16 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0811 18.8752 49.0120 REMARK 3 T TENSOR REMARK 3 T11: -0.0726 T22: -0.1418 REMARK 3 T33: -0.1083 T12: 0.0101 REMARK 3 T13: -0.0825 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 4.7465 L22: 2.1977 REMARK 3 L33: 6.6472 L12: -1.6609 REMARK 3 L13: -0.1501 L23: 0.9313 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: -0.0768 S13: -0.2879 REMARK 3 S21: 0.2989 S22: 0.4707 S23: -0.4116 REMARK 3 S31: 0.4584 S32: -0.0613 S33: -0.3821 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 1 G 8 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4796 9.8632 73.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.7177 T22: 0.0064 REMARK 3 T33: 0.0253 T12: 0.3474 REMARK 3 T13: -0.2986 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 10.2321 L22: 4.6063 REMARK 3 L33: 16.4623 L12: 2.3248 REMARK 3 L13: 5.8636 L23: 3.9234 REMARK 3 S TENSOR REMARK 3 S11: 1.3394 S12: 0.0766 S13: -1.2797 REMARK 3 S21: 0.4680 S22: 0.4988 S23: -0.1637 REMARK 3 S31: 2.6977 S32: 0.4792 S33: -1.8381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.51090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 246D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD, 40 MM NA CACODYLATE (PH 7.0), REMARK 280 12MM SPERMINE TETRA-HCL, 80 MM POTASSIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 23.54750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 13.59516 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 141.55167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 23.54750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 13.59516 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 141.55167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 23.54750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 13.59516 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 141.55167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 23.54750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 13.59516 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.55167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 23.54750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 13.59516 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.55167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 23.54750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 13.59516 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.55167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 27.19031 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 283.10333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 27.19031 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 283.10333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 27.19031 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 283.10333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 27.19031 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 283.10333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 27.19031 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 283.10333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 27.19031 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 283.10333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 23.54750 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 13.59516 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 141.55167 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K F 2 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 21 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 42 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 10 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 93 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 18 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 84 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 14 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 18 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 131 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C F 16 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K F 2 DBREF 3S49 A 1 8 PDB 3S49 3S49 1 8 DBREF 3S49 B 9 16 PDB 3S49 3S49 9 16 DBREF 3S49 C 1 8 PDB 3S49 3S49 1 8 DBREF 3S49 D 9 16 PDB 3S49 3S49 9 16 DBREF 3S49 E 1 8 PDB 3S49 3S49 1 8 DBREF 3S49 F 9 16 PDB 3S49 3S49 9 16 DBREF 3S49 G 1 8 PDB 3S49 3S49 1 8 SEQRES 1 A 8 G U A U A RUS A C SEQRES 1 B 8 G U A U A RUS A C SEQRES 1 C 8 G U A U A RUS A C SEQRES 1 D 8 G U A U A RUS A C SEQRES 1 E 8 G U A U A RUS A C SEQRES 1 F 8 G U A U A RUS A C SEQRES 1 G 8 G U A U A RUS A C MODRES 3S49 RUS A 6 U MODRES 3S49 RUS B 14 U MODRES 3S49 RUS C 6 U MODRES 3S49 RUS D 14 U MODRES 3S49 RUS E 6 U MODRES 3S49 RUS F 14 U MODRES 3S49 RUS G 6 U HET RUS A 6 20 HET RUS B 14 20 HET RUS C 6 20 HET RUS D 14 20 HET RUS E 6 20 HET RUS F 14 20 HET RUS G 6 20 HET K C 9 1 HET K E 9 1 HET K F 2 1 HETNAM RUS 1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-2- HETNAM 2 RUS SELANYLPYRIMIDIN-4(1H)-ONE HETNAM K POTASSIUM ION FORMUL 1 RUS 7(C9 H13 N2 O8 P SE) FORMUL 8 K 3(K 1+) FORMUL 11 HOH *71(H2 O) LINK O3' A A 5 P RUS A 6 1555 1555 1.60 LINK O3' A B 13 P RUS B 14 1555 1555 1.61 LINK O3' A C 5 P RUS C 6 1555 1555 1.60 LINK O3' A D 13 P RUS D 14 1555 1555 1.60 LINK O3' A E 5 P RUS E 6 1555 1555 1.60 LINK O3' A F 13 P RUS F 14 1555 1555 1.59 LINK O3' A G 5 P RUS G 6 1555 1555 1.61 LINK K K E 9 O HOH F 131 1555 1555 3.43 LINK K K F 2 OP1 A F 13 1555 1555 3.38 SITE 1 AC1 1 A F 13 CRYST1 47.095 47.095 424.655 90.00 90.00 120.00 H 3 2 126 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021234 0.012259 0.000000 0.00000 SCALE2 0.000000 0.024519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002355 0.00000