HEADER HYDROLASE 26-MAY-11 3S7K TITLE STRUCTURE OF THROMBIN MUTANT Y225P IN THE E FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: THROMBIN LIGHT CHAIN; COMPND 5 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 6 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 7 CHAIN; COMPND 8 EC: 3.4.21.5; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PROTHROMBIN; COMPND 13 CHAIN: B, D; COMPND 14 FRAGMENT: THROMBIN HEAVY CHAIN; COMPND 15 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 16 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 17 CHAIN; COMPND 18 EC: 3.4.21.5; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: F2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.NIU,Z.CHEN,P.GANDHI,A.VOGT,N.POZZI,L.A.PELE,F.ZAPATA,E.DI CERA REVDAT 3 13-SEP-23 3S7K 1 REMARK SEQADV LINK REVDAT 2 24-AUG-11 3S7K 1 JRNL VERSN REVDAT 1 06-JUL-11 3S7K 0 JRNL AUTH W.NIU,Z.CHEN,P.S.GANDHI,A.D.VOGT,N.POZZI,L.A.PELC,F.ZAPATA, JRNL AUTH 2 E.DI CERA JRNL TITL CRYSTALLOGRAPHIC AND KINETIC EVIDENCE OF ALLOSTERY IN A JRNL TITL 2 TRYPSIN-LIKE PROTEASE. JRNL REF BIOCHEMISTRY V. 50 6301 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21707111 JRNL DOI 10.1021/BI200878C REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.O.PINEDA,C.J.CARRELL,L.A.BUSH,S.PRASAD,S.CACCIA,Z.W.CHEN, REMARK 1 AUTH 2 F.S.MATHEWS,E.DI CERA REMARK 1 TITL MOLECULAR DISSECTION OF NA+ BINDING TO THROMBIN. REMARK 1 REF J.BIOL.CHEM. V. 279 31842 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15152000 REMARK 1 DOI 10.1074/JBC.M401756200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : -0.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2179 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4713 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6362 ; 1.287 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 5.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;33.277 ;23.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 842 ;16.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;14.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3572 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2823 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4549 ; 1.169 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1890 ; 1.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1813 ; 2.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2270 10.7250 0.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.2364 REMARK 3 T33: 0.1524 T12: -0.0489 REMARK 3 T13: -0.0044 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 5.2391 L22: 5.8503 REMARK 3 L33: 9.4486 L12: 0.8170 REMARK 3 L13: -1.5322 L23: 3.2563 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: 0.6132 S13: 0.1106 REMARK 3 S21: -0.4458 S22: -0.0525 S23: 0.3272 REMARK 3 S31: -0.3295 S32: -0.5037 S33: 0.1832 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 8.624 -0.295 8.346 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2143 REMARK 3 T33: 0.2497 T12: -0.0403 REMARK 3 T13: 0.0391 T23: -0.0987 REMARK 3 L TENSOR REMARK 3 L11: 2.8068 L22: 3.8912 REMARK 3 L33: 6.9345 L12: 1.6143 REMARK 3 L13: -2.0921 L23: -1.5090 REMARK 3 S TENSOR REMARK 3 S11: -0.2515 S12: 0.4550 S13: -0.4259 REMARK 3 S21: -0.7393 S22: 0.1852 S23: -0.2602 REMARK 3 S31: 0.4200 S32: -0.0077 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8310 18.9520 10.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.1885 REMARK 3 T33: 0.2050 T12: -0.0641 REMARK 3 T13: 0.0355 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.0957 L22: 1.8038 REMARK 3 L33: 3.5308 L12: 0.7586 REMARK 3 L13: 0.3664 L23: 1.6232 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: 0.1805 S13: -0.0527 REMARK 3 S21: -0.1636 S22: 0.2273 S23: -0.2805 REMARK 3 S31: -0.2382 S32: 0.4393 S33: -0.1502 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 26.824 21.363 4.619 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.3323 REMARK 3 T33: 0.2348 T12: -0.1887 REMARK 3 T13: -0.0403 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 6.0255 L22: 19.5870 REMARK 3 L33: 5.2715 L12: 6.4363 REMARK 3 L13: 0.8984 L23: 6.8376 REMARK 3 S TENSOR REMARK 3 S11: 0.5499 S12: -0.4516 S13: -0.2479 REMARK 3 S21: 1.4957 S22: -0.2553 S23: -1.1891 REMARK 3 S31: -0.0213 S32: 0.6666 S33: -0.2946 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 18.199 18.739 11.588 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1548 REMARK 3 T33: 0.1921 T12: -0.0258 REMARK 3 T13: 0.0217 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.7310 L22: 2.0084 REMARK 3 L33: 1.6010 L12: 1.0247 REMARK 3 L13: 0.2827 L23: 0.4557 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: 0.1116 S13: 0.1065 REMARK 3 S21: -0.2572 S22: 0.0934 S23: -0.0623 REMARK 3 S31: -0.2755 S32: 0.1924 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 154 B 170 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5760 7.1770 23.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.1285 T22: 0.1668 REMARK 3 T33: 0.2134 T12: -0.0383 REMARK 3 T13: -0.0299 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.6554 L22: 3.2259 REMARK 3 L33: 6.6870 L12: 0.8680 REMARK 3 L13: -1.8460 L23: 0.2134 REMARK 3 S TENSOR REMARK 3 S11: 0.2075 S12: -0.3842 S13: -0.1762 REMARK 3 S21: 0.4585 S22: -0.1723 S23: -0.2015 REMARK 3 S31: 0.1842 S32: 0.2358 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 171 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9170 13.2100 29.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2745 REMARK 3 T33: 0.1850 T12: -0.0896 REMARK 3 T13: -0.0161 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 4.4025 L22: 4.1781 REMARK 3 L33: 4.3483 L12: 1.0454 REMARK 3 L13: 1.3122 L23: 1.3114 REMARK 3 S TENSOR REMARK 3 S11: 0.1867 S12: -0.6176 S13: -0.0384 REMARK 3 S21: 0.6109 S22: -0.1596 S23: -0.1461 REMARK 3 S31: 0.1648 S32: 0.1647 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 186 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7270 2.7240 23.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.5052 T22: 0.4084 REMARK 3 T33: 0.6911 T12: 0.1290 REMARK 3 T13: -0.1173 T23: 0.1967 REMARK 3 L TENSOR REMARK 3 L11: 14.3457 L22: 13.3358 REMARK 3 L33: 14.8684 L12: 4.7656 REMARK 3 L13: -2.1069 L23: -5.6734 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: -1.6206 S13: -2.1706 REMARK 3 S21: 0.5998 S22: -0.1253 S23: -1.4356 REMARK 3 S31: 1.6666 S32: 0.9220 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 194 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5070 11.8490 14.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0715 REMARK 3 T33: 0.1003 T12: -0.0198 REMARK 3 T13: 0.0088 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 6.4028 L22: 3.2256 REMARK 3 L33: 2.5096 L12: 2.9104 REMARK 3 L13: 2.0921 L23: 1.3653 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.0374 S13: -0.0953 REMARK 3 S21: 0.0073 S22: 0.0287 S23: -0.0723 REMARK 3 S31: -0.0607 S32: 0.0185 S33: 0.0005 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 219 B 246 REMARK 3 ORIGIN FOR THE GROUP (A): 12.280 20.452 19.414 REMARK 3 T TENSOR REMARK 3 T11: 0.4283 T22: 0.4763 REMARK 3 T33: 0.6301 T12: 0.0811 REMARK 3 T13: -0.1545 T23: 0.2248 REMARK 3 L TENSOR REMARK 3 L11: 4.4760 L22: 7.9227 REMARK 3 L33: 4.9571 L12: 0.1689 REMARK 3 L13: -0.5485 L23: -1.5609 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: -0.8768 S13: -0.7884 REMARK 3 S21: 0.9635 S22: -0.4357 S23: -1.7312 REMARK 3 S31: 0.7460 S32: 1.0543 S33: 0.5662 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 5.481 17.127 52.718 REMARK 3 T TENSOR REMARK 3 T11: 0.3873 T22: 0.3644 REMARK 3 T33: 0.3472 T12: -0.1161 REMARK 3 T13: -0.1829 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 10.0644 L22: 11.2223 REMARK 3 L33: 6.3390 L12: -6.7724 REMARK 3 L13: 3.8080 L23: -1.9159 REMARK 3 S TENSOR REMARK 3 S11: -0.9479 S12: 0.1370 S13: 0.2816 REMARK 3 S21: -0.2202 S22: 0.4492 S23: 0.6236 REMARK 3 S31: -0.8023 S32: -0.4940 S33: 0.4987 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 8.625 1.865 56.559 REMARK 3 T TENSOR REMARK 3 T11: 0.3555 T22: 0.3574 REMARK 3 T33: 0.2300 T12: -0.1169 REMARK 3 T13: 0.0348 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 2.3133 L22: 3.5241 REMARK 3 L33: 9.0274 L12: 1.3261 REMARK 3 L13: -1.6134 L23: -4.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.3235 S12: 0.6835 S13: -0.2517 REMARK 3 S21: -0.8012 S22: 0.1912 S23: -0.0657 REMARK 3 S31: 0.6651 S32: -0.1431 S33: 0.1323 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 35 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0400 12.4360 57.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.2332 T22: 0.3604 REMARK 3 T33: 0.2844 T12: -0.0959 REMARK 3 T13: 0.0497 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.0762 L22: 2.5774 REMARK 3 L33: 1.8337 L12: 0.3105 REMARK 3 L13: 0.0542 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.2898 S12: 0.2479 S13: -0.3396 REMARK 3 S21: -0.1216 S22: 0.1575 S23: -0.3832 REMARK 3 S31: 0.0162 S32: 0.5865 S33: 0.1323 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 36 D 60 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1130 25.6540 64.7520 REMARK 3 T TENSOR REMARK 3 T11: 0.3260 T22: 0.2337 REMARK 3 T33: 0.3207 T12: -0.1145 REMARK 3 T13: -0.0489 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 2.3313 L22: 0.9675 REMARK 3 L33: 3.6452 L12: 1.0225 REMARK 3 L13: 1.4651 L23: 1.6580 REMARK 3 S TENSOR REMARK 3 S11: -0.3568 S12: 0.3537 S13: 0.3436 REMARK 3 S21: -0.3167 S22: 0.2634 S23: -0.0363 REMARK 3 S31: -0.4960 S32: 0.3130 S33: 0.0935 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 61 D 73 REMARK 3 ORIGIN FOR THE GROUP (A): 25.756 23.043 55.615 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.3182 REMARK 3 T33: 0.2819 T12: -0.2209 REMARK 3 T13: -0.0357 T23: 0.1023 REMARK 3 L TENSOR REMARK 3 L11: 4.8552 L22: 21.3248 REMARK 3 L33: 6.7146 L12: 3.2130 REMARK 3 L13: 2.0982 L23: 10.0574 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.3442 S13: 0.0154 REMARK 3 S21: 0.1027 S22: 0.0942 S23: -1.2405 REMARK 3 S31: -0.2647 S32: 0.5087 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 74 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9540 25.7980 59.7890 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.2391 REMARK 3 T33: 0.2766 T12: -0.1372 REMARK 3 T13: -0.0372 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 2.6439 L22: 2.3588 REMARK 3 L33: 5.7227 L12: 1.1559 REMARK 3 L13: 0.0386 L23: 0.9412 REMARK 3 S TENSOR REMARK 3 S11: -0.2819 S12: 0.4224 S13: 0.3942 REMARK 3 S21: -0.4221 S22: 0.2504 S23: 0.0626 REMARK 3 S31: -0.5015 S32: 0.4385 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 139 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1550 18.1780 63.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1478 REMARK 3 T33: 0.2076 T12: -0.0211 REMARK 3 T13: -0.0252 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.2307 L22: 2.1777 REMARK 3 L33: 1.0767 L12: 1.1248 REMARK 3 L13: 0.2873 L23: 0.2752 REMARK 3 S TENSOR REMARK 3 S11: -0.1928 S12: 0.1882 S13: 0.2784 REMARK 3 S21: -0.1547 S22: 0.0719 S23: 0.1698 REMARK 3 S31: -0.2384 S32: -0.0207 S33: 0.1209 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 140 D 156 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4080 10.1780 63.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 1.0823 REMARK 3 T33: 1.0009 T12: -0.1821 REMARK 3 T13: -0.0017 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 9.5003 L22: 13.2329 REMARK 3 L33: 6.3804 L12: -2.7521 REMARK 3 L13: 2.4367 L23: 7.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.5017 S12: 0.4479 S13: 0.5231 REMARK 3 S21: 0.2779 S22: 1.6181 S23: -2.6043 REMARK 3 S31: -0.1215 S32: 1.7808 S33: -1.1165 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 157 D 171 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9140 6.2060 76.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.1615 REMARK 3 T33: 0.2012 T12: -0.0351 REMARK 3 T13: 0.0092 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.9241 L22: 3.1328 REMARK 3 L33: 7.2814 L12: 0.9935 REMARK 3 L13: -0.0475 L23: 1.4581 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: -0.3261 S13: -0.1267 REMARK 3 S21: 0.4915 S22: -0.0838 S23: -0.1436 REMARK 3 S31: 0.1513 S32: 0.0734 S33: 0.0032 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 172 D 190 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2890 7.3950 77.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2236 REMARK 3 T33: 0.2350 T12: -0.0145 REMARK 3 T13: -0.0209 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.9958 L22: 2.4756 REMARK 3 L33: 2.2477 L12: 0.6608 REMARK 3 L13: 0.7170 L23: -0.3684 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.2159 S13: -0.2255 REMARK 3 S21: 0.3105 S22: -0.0317 S23: -0.2501 REMARK 3 S31: 0.3085 S32: 0.1800 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 191 D 230 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9590 11.3980 68.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.1104 REMARK 3 T33: 0.1274 T12: -0.0162 REMARK 3 T13: 0.0053 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.6604 L22: 3.8161 REMARK 3 L33: 3.2640 L12: 1.9591 REMARK 3 L13: 0.6865 L23: 0.2908 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.0073 S13: -0.1123 REMARK 3 S21: 0.1158 S22: 0.0388 S23: -0.2248 REMARK 3 S31: -0.0403 S32: 0.2136 S33: 0.1199 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 231 D 246 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5770 27.7720 66.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.1743 REMARK 3 T33: 0.5414 T12: 0.0736 REMARK 3 T13: -0.1192 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 10.2556 L22: 12.4665 REMARK 3 L33: 7.3275 L12: 4.0047 REMARK 3 L13: -2.7026 L23: -4.2399 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.4617 S13: 1.5935 REMARK 3 S21: -0.2319 S22: -0.0678 S23: 1.2229 REMARK 3 S31: -0.6786 S32: -0.4788 S33: -0.1004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR+NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1SHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K FORMATE, 20 % PEG 3350, PH REMARK 280 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.96850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.40650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.96850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.40650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 402 LIES ON A SPECIAL POSITION. REMARK 375 K K C 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 1G REMARK 465 GLY A 1F REMARK 465 SER A 1E REMARK 465 GLY A 1D REMARK 465 THR B 149 REMARK 465 ALA B 149A REMARK 465 ASN B 149B REMARK 465 VAL B 149C REMARK 465 GLY B 149D REMARK 465 LYS B 149E REMARK 465 GLU B 247 REMARK 465 PHE C 1G REMARK 465 GLY C 1F REMARK 465 TRP D 148 REMARK 465 THR D 149 REMARK 465 ALA D 149A REMARK 465 ASN D 149B REMARK 465 VAL D 149C REMARK 465 GLY D 149D REMARK 465 LYS D 149E REMARK 465 GLU D 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 65 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU D 65 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -87.06 -126.99 REMARK 500 ASP A 14L 123.40 103.70 REMARK 500 ASN B 60G 83.80 -158.63 REMARK 500 HIS B 71 -55.08 -121.50 REMARK 500 ILE B 79 -56.31 -120.49 REMARK 500 ASN B 98 12.53 -145.47 REMARK 500 PHE C 7 -85.07 -132.49 REMARK 500 ASP C 14L 101.99 -164.75 REMARK 500 TYR D 60A 84.14 -151.58 REMARK 500 ASN D 60G 78.41 -158.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 14J O REMARK 620 2 HOH A 94 O 69.1 REMARK 620 3 TYR B 134 OH 74.9 89.4 REMARK 620 4 HOH B 381 O 137.0 74.7 82.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 14J O REMARK 620 2 TYR D 134 OH 75.7 REMARK 620 3 HOH D 295 O 156.9 81.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHH RELATED DB: PDB REMARK 900 SLOW FORM OF THROMBIN BOUND WITH PPACK REMARK 900 RELATED ID: 3S7H RELATED DB: PDB DBREF 3S7K A 1G 15 UNP P00734 THRB_HUMAN 329 363 DBREF 3S7K B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3S7K C 1G 15 UNP P00734 THRB_HUMAN 329 363 DBREF 3S7K D 16 247 UNP P00734 THRB_HUMAN 364 622 SEQADV 3S7K PRO B 225 UNP P00734 TYR 600 ENGINEERED MUTATION SEQADV 3S7K PRO D 225 UNP P00734 TYR 600 ENGINEERED MUTATION SEQRES 1 A 35 PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU SEQRES 2 A 35 PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU SEQRES 3 A 35 LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS PRO GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 35 PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU SEQRES 2 C 35 PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU SEQRES 3 C 35 LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS PRO GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU HET K A 402 1 HET TRS B 401 8 HET K C 402 1 HET TRS D 401 8 HETNAM K POTASSIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 K 2(K 1+) FORMUL 6 TRS 2(C4 H12 N O3 1+) FORMUL 9 HOH *384(H2 O) HELIX 1 1 PHE A 7 SER A 11 5 5 HELIX 2 2 THR A 14B ASP A 14L 1 11 HELIX 3 3 ALA B 55 CYS B 58 5 4 HELIX 4 4 PRO B 60B ASP B 60E 5 4 HELIX 5 5 THR B 60I ASN B 62 5 3 HELIX 6 6 ASP B 125 LEU B 130 1 9 HELIX 7 7 GLU B 164 SER B 171 1 8 HELIX 8 8 LEU B 234 GLY B 246 1 13 HELIX 9 9 GLY C 1D CYS C 1 5 5 HELIX 10 10 PHE C 7 SER C 11 5 5 HELIX 11 11 THR C 14B ASP C 14L 1 11 HELIX 12 12 ALA D 55 CYS D 58 5 4 HELIX 13 13 PRO D 60B ASP D 60E 5 4 HELIX 14 14 THR D 60I ASN D 62 5 3 HELIX 15 15 ASP D 125 LEU D 130 1 9 HELIX 16 16 GLU D 164 SER D 171 1 8 HELIX 17 17 LEU D 234 GLY D 246 1 13 SHEET 1 A 7 SER B 20 ASP B 21 0 SHEET 2 A 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 A 7 LYS B 135 GLY B 140 -1 N VAL B 138 O VAL B 158 SHEET 4 A 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 A 7 TRP B 207 TRP B 215 -1 O TYR B 208 N MET B 201 SHEET 6 A 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 A 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 B 7 LYS B 81 SER B 83 0 SHEET 2 B 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 3 B 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 4 B 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 5 B 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 6 B 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 7 B 7 LEU B 85 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 1 C 2 LEU B 60 TYR B 60A 0 SHEET 2 C 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 D 7 SER D 20 ASP D 21 0 SHEET 2 D 7 GLN D 156 PRO D 161 -1 O VAL D 157 N SER D 20 SHEET 3 D 7 LYS D 135 GLY D 140 -1 N GLY D 136 O LEU D 160 SHEET 4 D 7 PRO D 198 LYS D 202 -1 O VAL D 200 N ARG D 137 SHEET 5 D 7 TRP D 207 TRP D 215 -1 O TYR D 208 N MET D 201 SHEET 6 D 7 GLY D 226 HIS D 230 -1 O PHE D 227 N TRP D 215 SHEET 7 D 7 MET D 180 ALA D 183 -1 N PHE D 181 O TYR D 228 SHEET 1 E 7 LYS D 81 SER D 83 0 SHEET 2 E 7 LEU D 64 ILE D 68 -1 N ILE D 68 O LYS D 81 SHEET 3 E 7 GLN D 30 ARG D 35 -1 N PHE D 34 O LEU D 65 SHEET 4 E 7 GLU D 39 LEU D 46 -1 O LEU D 41 N LEU D 33 SHEET 5 E 7 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 6 E 7 ALA D 104 LEU D 108 -1 O ALA D 104 N THR D 54 SHEET 7 E 7 LEU D 85 ILE D 90 -1 N GLU D 86 O LYS D 107 SHEET 1 F 2 LEU D 60 TYR D 60A 0 SHEET 2 F 2 LYS D 60F ASN D 60G-1 O LYS D 60F N TYR D 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.08 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.04 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.06 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.05 SSBOND 5 CYS C 1 CYS D 122 1555 1555 2.06 SSBOND 6 CYS D 42 CYS D 58 1555 1555 2.03 SSBOND 7 CYS D 168 CYS D 182 1555 1555 2.03 SSBOND 8 CYS D 191 CYS D 220 1555 1555 2.07 LINK O TYR A 14J K K A 402 1555 1555 2.70 LINK O HOH A 94 K K A 402 1555 1555 3.18 LINK K K A 402 OH TYR B 134 1555 1555 2.76 LINK K K A 402 O HOH B 381 1555 1555 2.63 LINK O TYR C 14J K K C 402 1555 1555 2.61 LINK K K C 402 OH TYR D 134 1555 1555 2.68 LINK K K C 402 O HOH D 295 1555 1555 2.70 CISPEP 1 SER B 36A PRO B 37 0 -5.63 CISPEP 2 SER D 36A PRO D 37 0 -8.00 SITE 1 AC1 11 LEU B 130 ALA B 132 ILE B 162 VAL B 163 SITE 2 AC1 11 GLU B 164 ARG B 165 CYS B 168 PHE B 181 SITE 3 AC1 11 CYS B 182 HOH B 352 ASP D 60E SITE 1 AC2 3 TYR A 14J TYR B 134 HOH B 381 SITE 1 AC3 9 ASP B 60E ILE D 162 VAL D 163 ARG D 165 SITE 2 AC3 9 CYS D 168 PHE D 181 CYS D 182 HOH D 371 SITE 3 AC3 9 HOH D 372 SITE 1 AC4 3 TYR C 14J TYR D 134 HOH D 295 CRYST1 61.937 86.813 100.968 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009904 0.00000