data_3S7R # _entry.id 3S7R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S7R pdb_00003s7r 10.2210/pdb3s7r/pdb RCSB RCSB065867 ? ? WWPDB D_1000065867 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 421663 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3S7R _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 'Partnership for Stem Cell Biology (STEMCELL)' 3 # _citation.id primary _citation.title 'Crystal structure of a Heterogeneous nuclear ribonucleoprotein A/B (HNRPAB) from Homo sapiens at 2.15 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? primary 'Partnership for Stem Cell Biology (STEMCELL)' 3 ? # _cell.entry_id 3S7R _cell.length_a 43.150 _cell.length_b 41.856 _cell.length_c 55.146 _cell.angle_alpha 90.00 _cell.angle_beta 92.65 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3S7R _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heterogeneous nuclear ribonucleoprotein A/B' 9809.822 2 ? ? 'sequence database residues 59-144' ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 2 ? ? ? ? 3 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hnRNP A/B, APOBEC1-binding protein 1, ABBP-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GINASKNEEDAGK(MSE)FVGGLSWDTSKKDLKDYFTKFGEVVDCTIK(MSE)DPNTGRSRGFGFILFKDAASVEKVLDQ KEHRLDGRVIDPKKA ; _entity_poly.pdbx_seq_one_letter_code_can ;GINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR VIDPKKA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 421663 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 ASN n 1 4 ALA n 1 5 SER n 1 6 LYS n 1 7 ASN n 1 8 GLU n 1 9 GLU n 1 10 ASP n 1 11 ALA n 1 12 GLY n 1 13 LYS n 1 14 MSE n 1 15 PHE n 1 16 VAL n 1 17 GLY n 1 18 GLY n 1 19 LEU n 1 20 SER n 1 21 TRP n 1 22 ASP n 1 23 THR n 1 24 SER n 1 25 LYS n 1 26 LYS n 1 27 ASP n 1 28 LEU n 1 29 LYS n 1 30 ASP n 1 31 TYR n 1 32 PHE n 1 33 THR n 1 34 LYS n 1 35 PHE n 1 36 GLY n 1 37 GLU n 1 38 VAL n 1 39 VAL n 1 40 ASP n 1 41 CYS n 1 42 THR n 1 43 ILE n 1 44 LYS n 1 45 MSE n 1 46 ASP n 1 47 PRO n 1 48 ASN n 1 49 THR n 1 50 GLY n 1 51 ARG n 1 52 SER n 1 53 ARG n 1 54 GLY n 1 55 PHE n 1 56 GLY n 1 57 PHE n 1 58 ILE n 1 59 LEU n 1 60 PHE n 1 61 LYS n 1 62 ASP n 1 63 ALA n 1 64 ALA n 1 65 SER n 1 66 VAL n 1 67 GLU n 1 68 LYS n 1 69 VAL n 1 70 LEU n 1 71 ASP n 1 72 GLN n 1 73 LYS n 1 74 GLU n 1 75 HIS n 1 76 ARG n 1 77 LEU n 1 78 ASP n 1 79 GLY n 1 80 ARG n 1 81 VAL n 1 82 ILE n 1 83 ASP n 1 84 PRO n 1 85 LYS n 1 86 LYS n 1 87 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ABBP1, BC009359, HNRNPAB, HNRPAB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ROAA_HUMAN _struct_ref.pdbx_db_accession Q99729 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;INASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV IDPKKA ; _struct_ref.pdbx_align_begin 59 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3S7R A 2 ? 87 ? Q99729 59 ? 144 ? 59 144 2 1 3S7R B 2 ? 87 ? Q99729 59 ? 144 ? 59 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3S7R GLY A 1 ? UNP Q99729 ? ? 'expression tag' 0 1 2 3S7R GLY B 1 ? UNP Q99729 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3S7R # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.00% polyethylene glycol 600, 0.1M CHES pH 9.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-03-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97934 1.0 3 0.97915 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97934,0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3S7R _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 30.028 _reflns.number_obs 10785 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_netI_over_sigmaI 7.050 _reflns.percent_possible_obs 97.300 _reflns.B_iso_Wilson_estimate 31.542 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.150 2.230 4069 ? 2151 0.571 1.6 ? ? ? ? ? 96.300 1 1 2.230 2.320 3858 ? 2004 0.502 1.8 ? ? ? ? ? 96.000 2 1 2.320 2.420 3702 ? 1922 0.412 2.1 ? ? ? ? ? 98.600 3 1 2.420 2.550 4123 ? 2133 0.284 2.8 ? ? ? ? ? 99.000 4 1 2.550 2.710 3889 ? 2020 0.210 3.8 ? ? ? ? ? 96.700 5 1 2.710 2.920 4009 ? 2066 0.155 4.9 ? ? ? ? ? 98.600 6 1 2.920 3.210 3982 ? 2052 0.095 7.7 ? ? ? ? ? 98.600 7 1 3.210 3.670 3859 ? 1992 0.063 11.0 ? ? ? ? ? 96.200 8 1 3.670 4.610 3917 ? 2021 0.041 16.2 ? ? ? ? ? 96.000 9 1 4.610 30.028 4000 ? 2061 0.034 18.6 ? ? ? ? ? 97.200 10 1 # _refine.entry_id 3S7R _refine.ls_d_res_high 2.1500 _refine.ls_d_res_low 30.028 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 10776 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS).4.AN UNKNOWN LIGAND (UNL) WAS MODELED AT THE PUTATIVE RNA BINDING SITE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1793 _refine.ls_R_factor_R_work 0.1771 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2253 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 517 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.0225 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.7607 _refine.aniso_B[2][2] 4.7593 _refine.aniso_B[3][3] -2.9986 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -3.3003 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9508 _refine.correlation_coeff_Fo_to_Fc_free 0.9218 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 107.150 _refine.B_iso_min 20.310 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1241 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1355 _refine_hist.d_res_high 2.1500 _refine_hist.d_res_low 30.028 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 612 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 33 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 191 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1286 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 163 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1500 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1286 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1731 1.040 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.350 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.750 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1500 _refine_ls_shell.d_res_low 2.4000 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2885 _refine_ls_shell.R_factor_all 0.2052 _refine_ls_shell.R_factor_R_work 0.2022 _refine_ls_shell.R_factor_R_free 0.2615 _refine_ls_shell.percent_reflns_R_free 4.8500 _refine_ls_shell.number_reflns_R_free 147 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3032 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S7R _struct.title 'Crystal structure of a Heterogeneous nuclear ribonucleoprotein A/B (HNRPAB) from HOMO SAPIENS at 2.15 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ferredoxin-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA BINDING PROTEIN, Partnership for T-Cell Biology, TCELL, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 3S7R # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? THR A 33 ? SER A 81 THR A 90 1 ? 10 HELX_P HELX_P2 2 ALA A 63 ? GLN A 72 ? ALA A 120 GLN A 129 1 ? 10 HELX_P HELX_P3 3 SER B 24 ? THR B 33 ? SER B 81 THR B 90 1 ? 10 HELX_P HELX_P4 4 ALA B 63 ? GLN B 72 ? ALA B 120 GLN B 129 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 13 C ? ? ? 1_555 A MSE 14 N ? ? A LYS 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A PHE 15 N ? ? A MSE 71 A PHE 72 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A LYS 44 C ? ? ? 1_555 A MSE 45 N ? ? A LYS 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A MSE 45 C ? ? ? 1_555 A ASP 46 N ? ? A MSE 102 A ASP 103 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale5 covale both ? B LYS 13 C ? ? ? 1_555 B MSE 14 N ? ? B LYS 70 B MSE 71 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale6 covale both ? B MSE 14 C ? ? ? 1_555 B PHE 15 N ? ? B MSE 71 B PHE 72 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? B LYS 44 C ? ? ? 1_555 B MSE 45 N ? ? B LYS 101 B MSE 102 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? B MSE 45 C ? ? ? 1_555 B ASP 46 N ? ? B MSE 102 B ASP 103 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 38 ? MSE A 45 ? VAL A 95 MSE A 102 A 2 SER A 52 ? PHE A 60 ? SER A 109 PHE A 117 A 3 LYS A 13 ? GLY A 17 ? LYS A 70 GLY A 74 A 4 ARG A 80 ? LYS A 86 ? ARG A 137 LYS A 143 A 5 HIS A 75 ? LEU A 77 ? HIS A 132 LEU A 134 B 1 VAL B 38 ? MSE B 45 ? VAL B 95 MSE B 102 B 2 SER B 52 ? PHE B 60 ? SER B 109 PHE B 117 B 3 LYS B 13 ? GLY B 17 ? LYS B 70 GLY B 74 B 4 ARG B 80 ? LYS B 86 ? ARG B 137 LYS B 143 B 5 HIS B 75 ? LEU B 77 ? HIS B 132 LEU B 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 44 ? N LYS A 101 O ARG A 53 ? O ARG A 110 A 2 3 O GLY A 56 ? O GLY A 113 N VAL A 16 ? N VAL A 73 A 3 4 N GLY A 17 ? N GLY A 74 O ASP A 83 ? O ASP A 140 A 4 5 O ILE A 82 ? O ILE A 139 N HIS A 75 ? N HIS A 132 B 1 2 N LYS B 44 ? N LYS B 101 O ARG B 53 ? O ARG B 110 B 2 3 O GLY B 56 ? O GLY B 113 N VAL B 16 ? N VAL B 73 B 3 4 N GLY B 17 ? N GLY B 74 O ASP B 83 ? O ASP B 140 B 4 5 O ARG B 80 ? O ARG B 137 N LEU B 77 ? N LEU B 134 # _atom_sites.entry_id 3S7R _atom_sites.fract_transf_matrix[1][1] 0.023175 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001073 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023891 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018153 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ILE 2 59 ? ? ? A . n A 1 3 ASN 3 60 ? ? ? A . n A 1 4 ALA 4 61 ? ? ? A . n A 1 5 SER 5 62 ? ? ? A . n A 1 6 LYS 6 63 ? ? ? A . n A 1 7 ASN 7 64 64 ASN ASN A . n A 1 8 GLU 8 65 65 GLU GLU A . n A 1 9 GLU 9 66 66 GLU GLU A . n A 1 10 ASP 10 67 67 ASP ASP A . n A 1 11 ALA 11 68 68 ALA ALA A . n A 1 12 GLY 12 69 69 GLY GLY A . n A 1 13 LYS 13 70 70 LYS LYS A . n A 1 14 MSE 14 71 71 MSE MSE A . n A 1 15 PHE 15 72 72 PHE PHE A . n A 1 16 VAL 16 73 73 VAL VAL A . n A 1 17 GLY 17 74 74 GLY GLY A . n A 1 18 GLY 18 75 75 GLY GLY A . n A 1 19 LEU 19 76 76 LEU LEU A . n A 1 20 SER 20 77 77 SER SER A . n A 1 21 TRP 21 78 78 TRP TRP A . n A 1 22 ASP 22 79 79 ASP ASP A . n A 1 23 THR 23 80 80 THR THR A . n A 1 24 SER 24 81 81 SER SER A . n A 1 25 LYS 25 82 82 LYS LYS A . n A 1 26 LYS 26 83 83 LYS LYS A . n A 1 27 ASP 27 84 84 ASP ASP A . n A 1 28 LEU 28 85 85 LEU LEU A . n A 1 29 LYS 29 86 86 LYS LYS A . n A 1 30 ASP 30 87 87 ASP ASP A . n A 1 31 TYR 31 88 88 TYR TYR A . n A 1 32 PHE 32 89 89 PHE PHE A . n A 1 33 THR 33 90 90 THR THR A . n A 1 34 LYS 34 91 91 LYS LYS A . n A 1 35 PHE 35 92 92 PHE PHE A . n A 1 36 GLY 36 93 93 GLY GLY A . n A 1 37 GLU 37 94 94 GLU GLU A . n A 1 38 VAL 38 95 95 VAL VAL A . n A 1 39 VAL 39 96 96 VAL VAL A . n A 1 40 ASP 40 97 97 ASP ASP A . n A 1 41 CYS 41 98 98 CYS CYS A . n A 1 42 THR 42 99 99 THR THR A . n A 1 43 ILE 43 100 100 ILE ILE A . n A 1 44 LYS 44 101 101 LYS LYS A . n A 1 45 MSE 45 102 102 MSE MSE A . n A 1 46 ASP 46 103 103 ASP ASP A . n A 1 47 PRO 47 104 104 PRO PRO A . n A 1 48 ASN 48 105 105 ASN ASN A . n A 1 49 THR 49 106 106 THR THR A . n A 1 50 GLY 50 107 107 GLY GLY A . n A 1 51 ARG 51 108 108 ARG ARG A . n A 1 52 SER 52 109 109 SER SER A . n A 1 53 ARG 53 110 110 ARG ARG A . n A 1 54 GLY 54 111 111 GLY GLY A . n A 1 55 PHE 55 112 112 PHE PHE A . n A 1 56 GLY 56 113 113 GLY GLY A . n A 1 57 PHE 57 114 114 PHE PHE A . n A 1 58 ILE 58 115 115 ILE ILE A . n A 1 59 LEU 59 116 116 LEU LEU A . n A 1 60 PHE 60 117 117 PHE PHE A . n A 1 61 LYS 61 118 118 LYS LYS A . n A 1 62 ASP 62 119 119 ASP ASP A . n A 1 63 ALA 63 120 120 ALA ALA A . n A 1 64 ALA 64 121 121 ALA ALA A . n A 1 65 SER 65 122 122 SER SER A . n A 1 66 VAL 66 123 123 VAL VAL A . n A 1 67 GLU 67 124 124 GLU GLU A . n A 1 68 LYS 68 125 125 LYS LYS A . n A 1 69 VAL 69 126 126 VAL VAL A . n A 1 70 LEU 70 127 127 LEU LEU A . n A 1 71 ASP 71 128 128 ASP ASP A . n A 1 72 GLN 72 129 129 GLN GLN A . n A 1 73 LYS 73 130 130 LYS LYS A . n A 1 74 GLU 74 131 131 GLU GLU A . n A 1 75 HIS 75 132 132 HIS HIS A . n A 1 76 ARG 76 133 133 ARG ARG A . n A 1 77 LEU 77 134 134 LEU LEU A . n A 1 78 ASP 78 135 135 ASP ASP A . n A 1 79 GLY 79 136 136 GLY GLY A . n A 1 80 ARG 80 137 137 ARG ARG A . n A 1 81 VAL 81 138 138 VAL VAL A . n A 1 82 ILE 82 139 139 ILE ILE A . n A 1 83 ASP 83 140 140 ASP ASP A . n A 1 84 PRO 84 141 141 PRO PRO A . n A 1 85 LYS 85 142 142 LYS LYS A . n A 1 86 LYS 86 143 143 LYS LYS A . n A 1 87 ALA 87 144 144 ALA ALA A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 ILE 2 59 ? ? ? B . n B 1 3 ASN 3 60 ? ? ? B . n B 1 4 ALA 4 61 ? ? ? B . n B 1 5 SER 5 62 ? ? ? B . n B 1 6 LYS 6 63 ? ? ? B . n B 1 7 ASN 7 64 ? ? ? B . n B 1 8 GLU 8 65 65 GLU GLU B . n B 1 9 GLU 9 66 66 GLU GLU B . n B 1 10 ASP 10 67 67 ASP ASP B . n B 1 11 ALA 11 68 68 ALA ALA B . n B 1 12 GLY 12 69 69 GLY GLY B . n B 1 13 LYS 13 70 70 LYS LYS B . n B 1 14 MSE 14 71 71 MSE MSE B . n B 1 15 PHE 15 72 72 PHE PHE B . n B 1 16 VAL 16 73 73 VAL VAL B . n B 1 17 GLY 17 74 74 GLY GLY B . n B 1 18 GLY 18 75 75 GLY GLY B . n B 1 19 LEU 19 76 76 LEU LEU B . n B 1 20 SER 20 77 77 SER SER B . n B 1 21 TRP 21 78 78 TRP TRP B . n B 1 22 ASP 22 79 79 ASP ASP B . n B 1 23 THR 23 80 80 THR THR B . n B 1 24 SER 24 81 81 SER SER B . n B 1 25 LYS 25 82 82 LYS LYS B . n B 1 26 LYS 26 83 83 LYS LYS B . n B 1 27 ASP 27 84 84 ASP ASP B . n B 1 28 LEU 28 85 85 LEU LEU B . n B 1 29 LYS 29 86 86 LYS LYS B . n B 1 30 ASP 30 87 87 ASP ASP B . n B 1 31 TYR 31 88 88 TYR TYR B . n B 1 32 PHE 32 89 89 PHE PHE B . n B 1 33 THR 33 90 90 THR THR B . n B 1 34 LYS 34 91 91 LYS LYS B . n B 1 35 PHE 35 92 92 PHE PHE B . n B 1 36 GLY 36 93 93 GLY GLY B . n B 1 37 GLU 37 94 94 GLU GLU B . n B 1 38 VAL 38 95 95 VAL VAL B . n B 1 39 VAL 39 96 96 VAL VAL B . n B 1 40 ASP 40 97 97 ASP ASP B . n B 1 41 CYS 41 98 98 CYS CYS B . n B 1 42 THR 42 99 99 THR THR B . n B 1 43 ILE 43 100 100 ILE ILE B . n B 1 44 LYS 44 101 101 LYS LYS B . n B 1 45 MSE 45 102 102 MSE MSE B . n B 1 46 ASP 46 103 103 ASP ASP B . n B 1 47 PRO 47 104 104 PRO PRO B . n B 1 48 ASN 48 105 105 ASN ASN B . n B 1 49 THR 49 106 106 THR THR B . n B 1 50 GLY 50 107 107 GLY GLY B . n B 1 51 ARG 51 108 108 ARG ARG B . n B 1 52 SER 52 109 109 SER SER B . n B 1 53 ARG 53 110 110 ARG ARG B . n B 1 54 GLY 54 111 111 GLY GLY B . n B 1 55 PHE 55 112 112 PHE PHE B . n B 1 56 GLY 56 113 113 GLY GLY B . n B 1 57 PHE 57 114 114 PHE PHE B . n B 1 58 ILE 58 115 115 ILE ILE B . n B 1 59 LEU 59 116 116 LEU LEU B . n B 1 60 PHE 60 117 117 PHE PHE B . n B 1 61 LYS 61 118 118 LYS LYS B . n B 1 62 ASP 62 119 119 ASP ASP B . n B 1 63 ALA 63 120 120 ALA ALA B . n B 1 64 ALA 64 121 121 ALA ALA B . n B 1 65 SER 65 122 122 SER SER B . n B 1 66 VAL 66 123 123 VAL VAL B . n B 1 67 GLU 67 124 124 GLU GLU B . n B 1 68 LYS 68 125 125 LYS LYS B . n B 1 69 VAL 69 126 126 VAL VAL B . n B 1 70 LEU 70 127 127 LEU LEU B . n B 1 71 ASP 71 128 128 ASP ASP B . n B 1 72 GLN 72 129 129 GLN GLN B . n B 1 73 LYS 73 130 130 LYS LYS B . n B 1 74 GLU 74 131 131 GLU GLU B . n B 1 75 HIS 75 132 132 HIS HIS B . n B 1 76 ARG 76 133 133 ARG ARG B . n B 1 77 LEU 77 134 134 LEU LEU B . n B 1 78 ASP 78 135 135 ASP ASP B . n B 1 79 GLY 79 136 136 GLY GLY B . n B 1 80 ARG 80 137 137 ARG ARG B . n B 1 81 VAL 81 138 138 VAL VAL B . n B 1 82 ILE 82 139 139 ILE ILE B . n B 1 83 ASP 83 140 140 ASP ASP B . n B 1 84 PRO 84 141 141 PRO PRO B . n B 1 85 LYS 85 142 142 LYS LYS B . n B 1 86 LYS 86 143 143 LYS LYS B . n B 1 87 ALA 87 144 144 ALA ALA B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL PSI:Biology 'Partnership for Stem Cell Biology' 3 STEMCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UNL 1 401 401 UNL UNL A . D 2 UNL 1 402 402 UNL UNL B . E 3 HOH 1 403 403 HOH HOH A . E 3 HOH 2 404 404 HOH HOH A . E 3 HOH 3 405 405 HOH HOH A . E 3 HOH 4 406 406 HOH HOH A . E 3 HOH 5 407 407 HOH HOH A . E 3 HOH 6 408 408 HOH HOH A . E 3 HOH 7 409 409 HOH HOH A . E 3 HOH 8 410 410 HOH HOH A . E 3 HOH 9 411 411 HOH HOH A . E 3 HOH 10 412 412 HOH HOH A . E 3 HOH 11 413 413 HOH HOH A . E 3 HOH 12 415 415 HOH HOH A . E 3 HOH 13 416 416 HOH HOH A . E 3 HOH 14 417 417 HOH HOH A . E 3 HOH 15 418 418 HOH HOH A . E 3 HOH 16 419 419 HOH HOH A . E 3 HOH 17 420 420 HOH HOH A . E 3 HOH 18 421 421 HOH HOH A . E 3 HOH 19 422 422 HOH HOH A . E 3 HOH 20 423 423 HOH HOH A . E 3 HOH 21 424 424 HOH HOH A . E 3 HOH 22 425 425 HOH HOH A . E 3 HOH 23 446 446 HOH HOH A . E 3 HOH 24 447 447 HOH HOH A . E 3 HOH 25 451 451 HOH HOH A . E 3 HOH 26 453 453 HOH HOH A . E 3 HOH 27 454 454 HOH HOH A . E 3 HOH 28 455 455 HOH HOH A . E 3 HOH 29 456 456 HOH HOH A . E 3 HOH 30 457 457 HOH HOH A . E 3 HOH 31 462 462 HOH HOH A . E 3 HOH 32 463 463 HOH HOH A . E 3 HOH 33 464 464 HOH HOH A . E 3 HOH 34 465 465 HOH HOH A . E 3 HOH 35 466 466 HOH HOH A . E 3 HOH 36 467 467 HOH HOH A . E 3 HOH 37 468 468 HOH HOH A . E 3 HOH 38 469 469 HOH HOH A . E 3 HOH 39 474 474 HOH HOH A . E 3 HOH 40 480 480 HOH HOH A . E 3 HOH 41 482 482 HOH HOH A . E 3 HOH 42 484 484 HOH HOH A . E 3 HOH 43 485 485 HOH HOH A . E 3 HOH 44 486 486 HOH HOH A . E 3 HOH 45 487 487 HOH HOH A . E 3 HOH 46 488 488 HOH HOH A . E 3 HOH 47 489 489 HOH HOH A . E 3 HOH 48 490 490 HOH HOH A . E 3 HOH 49 491 491 HOH HOH A . E 3 HOH 50 493 493 HOH HOH A . E 3 HOH 51 495 495 HOH HOH A . E 3 HOH 52 496 496 HOH HOH A . E 3 HOH 53 499 499 HOH HOH A . E 3 HOH 54 501 501 HOH HOH A . E 3 HOH 55 502 502 HOH HOH A . F 3 HOH 1 414 414 HOH HOH B . F 3 HOH 2 426 426 HOH HOH B . F 3 HOH 3 427 427 HOH HOH B . F 3 HOH 4 428 428 HOH HOH B . F 3 HOH 5 429 429 HOH HOH B . F 3 HOH 6 430 430 HOH HOH B . F 3 HOH 7 431 431 HOH HOH B . F 3 HOH 8 432 432 HOH HOH B . F 3 HOH 9 433 433 HOH HOH B . F 3 HOH 10 434 434 HOH HOH B . F 3 HOH 11 435 435 HOH HOH B . F 3 HOH 12 436 436 HOH HOH B . F 3 HOH 13 437 437 HOH HOH B . F 3 HOH 14 438 438 HOH HOH B . F 3 HOH 15 439 439 HOH HOH B . F 3 HOH 16 440 440 HOH HOH B . F 3 HOH 17 441 441 HOH HOH B . F 3 HOH 18 442 442 HOH HOH B . F 3 HOH 19 443 443 HOH HOH B . F 3 HOH 20 444 444 HOH HOH B . F 3 HOH 21 445 445 HOH HOH B . F 3 HOH 22 448 448 HOH HOH B . F 3 HOH 23 449 449 HOH HOH B . F 3 HOH 24 450 450 HOH HOH B . F 3 HOH 25 452 452 HOH HOH B . F 3 HOH 26 458 458 HOH HOH B . F 3 HOH 27 459 459 HOH HOH B . F 3 HOH 28 460 460 HOH HOH B . F 3 HOH 29 461 461 HOH HOH B . F 3 HOH 30 470 470 HOH HOH B . F 3 HOH 31 471 471 HOH HOH B . F 3 HOH 32 472 472 HOH HOH B . F 3 HOH 33 473 473 HOH HOH B . F 3 HOH 34 475 475 HOH HOH B . F 3 HOH 35 476 476 HOH HOH B . F 3 HOH 36 477 477 HOH HOH B . F 3 HOH 37 478 478 HOH HOH B . F 3 HOH 38 479 479 HOH HOH B . F 3 HOH 39 481 481 HOH HOH B . F 3 HOH 40 483 483 HOH HOH B . F 3 HOH 41 492 492 HOH HOH B . F 3 HOH 42 494 494 HOH HOH B . F 3 HOH 43 497 497 HOH HOH B . F 3 HOH 44 498 498 HOH HOH B . F 3 HOH 45 500 500 HOH HOH B . F 3 HOH 46 503 503 HOH HOH B . F 3 HOH 47 504 504 HOH HOH B . F 3 HOH 48 505 505 HOH HOH B . F 3 HOH 49 506 506 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 71 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 102 ? MET SELENOMETHIONINE 3 B MSE 14 B MSE 71 ? MET SELENOMETHIONINE 4 B MSE 45 B MSE 102 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-10 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 34.9420 -2.4224 27.5420 0.1509 -0.1570 -0.1133 0.0109 0.1901 -0.0249 2.8061 3.8723 2.5789 1.7986 -1.4503 -0.8127 -0.0938 0.0599 0.0339 0.1033 -0.1009 -0.0788 -0.1931 -0.0503 -0.1193 'X-RAY DIFFRACTION' 2 ? refined 17.6486 -4.3901 48.2866 0.1293 -0.1612 -0.0984 0.0301 0.2023 0.0044 1.1824 4.0160 4.3326 0.0832 -0.7247 -0.8476 0.0589 0.0440 -0.1029 0.0330 -0.0230 0.3664 0.1700 -0.1081 -0.1160 # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id A 1 A 64 A 7 A 144 B 87 all '{ A|64 - 144 }' 'X-RAY DIFFRACTION' B 2 B 65 B 8 B 144 A 87 all '{ B|65 - 144 }' 'X-RAY DIFFRACTION' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3S7R _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 59-144 OF THE TARGET SEQUENCE. NUMBERING IS BASED ON ISOFORM 1 OF UNIPROTKB Q99729. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 64 ? CG ? A ASN 7 CG 2 1 Y 1 A ASN 64 ? OD1 ? A ASN 7 OD1 3 1 Y 1 A ASN 64 ? ND2 ? A ASN 7 ND2 4 1 Y 1 A GLU 65 ? CG ? A GLU 8 CG 5 1 Y 1 A GLU 65 ? CD ? A GLU 8 CD 6 1 Y 1 A GLU 65 ? OE1 ? A GLU 8 OE1 7 1 Y 1 A GLU 65 ? OE2 ? A GLU 8 OE2 8 1 Y 1 A ASP 128 ? CG ? A ASP 71 CG 9 1 Y 1 A ASP 128 ? OD1 ? A ASP 71 OD1 10 1 Y 1 A ASP 128 ? OD2 ? A ASP 71 OD2 11 1 Y 1 A LYS 130 ? CG ? A LYS 73 CG 12 1 Y 1 A LYS 130 ? CD ? A LYS 73 CD 13 1 Y 1 A LYS 130 ? CE ? A LYS 73 CE 14 1 Y 1 A LYS 130 ? NZ ? A LYS 73 NZ 15 1 Y 1 A ARG 137 ? NE ? A ARG 80 NE 16 1 Y 1 A ARG 137 ? CZ ? A ARG 80 CZ 17 1 Y 1 A ARG 137 ? NH1 ? A ARG 80 NH1 18 1 Y 1 A ARG 137 ? NH2 ? A ARG 80 NH2 19 1 Y 1 A LYS 143 ? CE ? A LYS 86 CE 20 1 Y 1 A LYS 143 ? NZ ? A LYS 86 NZ 21 1 Y 1 B GLU 124 ? CG ? B GLU 67 CG 22 1 Y 1 B GLU 124 ? CD ? B GLU 67 CD 23 1 Y 1 B GLU 124 ? OE1 ? B GLU 67 OE1 24 1 Y 1 B GLU 124 ? OE2 ? B GLU 67 OE2 25 1 Y 1 B LYS 130 ? CG ? B LYS 73 CG 26 1 Y 1 B LYS 130 ? CD ? B LYS 73 CD 27 1 Y 1 B LYS 130 ? CE ? B LYS 73 CE 28 1 Y 1 B LYS 130 ? NZ ? B LYS 73 NZ 29 1 Y 1 B ARG 137 ? CZ ? B ARG 80 CZ 30 1 Y 1 B ARG 137 ? NH1 ? B ARG 80 NH1 31 1 Y 1 B ARG 137 ? NH2 ? B ARG 80 NH2 32 1 Y 1 B LYS 143 ? CG ? B LYS 86 CG 33 1 Y 1 B LYS 143 ? CD ? B LYS 86 CD 34 1 Y 1 B LYS 143 ? CE ? B LYS 86 CE 35 1 Y 1 B LYS 143 ? NZ ? B LYS 86 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ILE 59 ? A ILE 2 3 1 Y 1 A ASN 60 ? A ASN 3 4 1 Y 1 A ALA 61 ? A ALA 4 5 1 Y 1 A SER 62 ? A SER 5 6 1 Y 1 A LYS 63 ? A LYS 6 7 1 Y 1 B GLY 0 ? B GLY 1 8 1 Y 1 B ILE 59 ? B ILE 2 9 1 Y 1 B ASN 60 ? B ASN 3 10 1 Y 1 B ALA 61 ? B ALA 4 11 1 Y 1 B SER 62 ? B SER 5 12 1 Y 1 B LYS 63 ? B LYS 6 13 1 Y 1 B ASN 64 ? B ASN 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 water HOH #