data_3S91 # _entry.id 3S91 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S91 pdb_00003s91 10.2210/pdb3s91/pdb RCSB RCSB065913 ? ? WWPDB D_1000065913 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3S92 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3S91 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Qi, J.' 3 'Keates, T.' 4 'Felletar, I.' 5 'Fedorov, O.' 6 'Muniz, J.' 7 'von Delft, F.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Weigelt, J.' 11 'Bountra, C.' 12 'Bradner, J.E.' 13 'Knapp, S.' 14 'Structural Genomics Consortium (SGC)' 15 # _citation.id primary _citation.title 'Crystal Structure of the first bromodomain of human BRD3 in complex with the inhibitor JQ1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Qi, J.' 3 ? primary 'Keates, T.' 4 ? primary 'Felletar, I.' 5 ? primary 'Fedorov, O.' 6 ? primary 'Muniz, J.' 7 ? primary 'von Delft, F.' 8 ? primary 'Arrowsmith, C.H.' 9 ? primary 'Edwards, A.M.' 10 ? primary 'Weigelt, J.' 11 ? primary 'Bountra, C.' 12 ? primary 'Bradner, J.E.' 13 ? primary 'Knapp, S.' 14 ? # _cell.length_a 86.560 _cell.length_b 86.560 _cell.length_c 76.891 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3S91 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.entry_id 3S91 _symmetry.Int_Tables_number 179 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 3' 14586.843 1 ? ? ? ? 2 non-polymer syn ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; 457.996 1 ? ? ? ? 3 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RING3-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC MQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC MQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 PRO n 1 4 GLU n 1 5 VAL n 1 6 SER n 1 7 ASN n 1 8 PRO n 1 9 SER n 1 10 LYS n 1 11 PRO n 1 12 GLY n 1 13 ARG n 1 14 LYS n 1 15 THR n 1 16 ASN n 1 17 GLN n 1 18 LEU n 1 19 GLN n 1 20 TYR n 1 21 MET n 1 22 GLN n 1 23 ASN n 1 24 VAL n 1 25 VAL n 1 26 VAL n 1 27 LYS n 1 28 THR n 1 29 LEU n 1 30 TRP n 1 31 LYS n 1 32 HIS n 1 33 GLN n 1 34 PHE n 1 35 ALA n 1 36 TRP n 1 37 PRO n 1 38 PHE n 1 39 TYR n 1 40 GLN n 1 41 PRO n 1 42 VAL n 1 43 ASP n 1 44 ALA n 1 45 ILE n 1 46 LYS n 1 47 LEU n 1 48 ASN n 1 49 LEU n 1 50 PRO n 1 51 ASP n 1 52 TYR n 1 53 HIS n 1 54 LYS n 1 55 ILE n 1 56 ILE n 1 57 LYS n 1 58 ASN n 1 59 PRO n 1 60 MET n 1 61 ASP n 1 62 MET n 1 63 GLY n 1 64 THR n 1 65 ILE n 1 66 LYS n 1 67 LYS n 1 68 ARG n 1 69 LEU n 1 70 GLU n 1 71 ASN n 1 72 ASN n 1 73 TYR n 1 74 TYR n 1 75 TRP n 1 76 SER n 1 77 ALA n 1 78 SER n 1 79 GLU n 1 80 CYS n 1 81 MET n 1 82 GLN n 1 83 ASP n 1 84 PHE n 1 85 ASN n 1 86 THR n 1 87 MET n 1 88 PHE n 1 89 THR n 1 90 ASN n 1 91 CYS n 1 92 TYR n 1 93 ILE n 1 94 TYR n 1 95 ASN n 1 96 LYS n 1 97 PRO n 1 98 THR n 1 99 ASP n 1 100 ASP n 1 101 ILE n 1 102 VAL n 1 103 LEU n 1 104 MET n 1 105 ALA n 1 106 GLN n 1 107 ALA n 1 108 LEU n 1 109 GLU n 1 110 LYS n 1 111 ILE n 1 112 PHE n 1 113 LEU n 1 114 GLN n 1 115 LYS n 1 116 VAL n 1 117 ALA n 1 118 GLN n 1 119 MET n 1 120 PRO n 1 121 GLN n 1 122 GLU n 1 123 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD3, KIAA0043, RING3L' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD3_HUMAN _struct_ref.pdbx_db_accession Q15059 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEE ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S91 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15059 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3S91 SER A 1 ? UNP Q15059 ? ? 'expression tag' 22 1 1 3S91 MET A 2 ? UNP Q15059 ? ? 'expression tag' 23 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 JQ1 non-polymer . ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; ? 'C23 H26 Cl N4 O2 S 1' 457.996 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3S91 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '14% isopropanol, 0.14M CaCl2, 30% glycerol, 0.7M acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2010-04-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3S91 _reflns.d_resolution_high 2.060 _reflns.d_resolution_low 28.743 _reflns.number_all 11022 _reflns.number_obs 11011 _reflns.pdbx_netI_over_sigmaI 13.200 _reflns.pdbx_Rsym_value 0.097 _reflns.pdbx_redundancy 5.600 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.B_iso_Wilson_estimate 32.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.060 2.170 ? 8020 ? 0.809 1.000 0.809 ? 5.200 ? 1552 99.900 1 1 2.170 2.300 ? 8432 ? 0.612 1.300 0.612 ? 5.700 ? 1480 100.000 2 1 2.300 2.460 ? 8085 ? 0.430 1.800 0.430 ? 5.700 ? 1413 100.000 3 1 2.460 2.660 ? 7421 ? 0.301 2.600 0.301 ? 5.700 ? 1293 100.000 4 1 2.660 2.910 ? 6963 ? 0.178 4.400 0.178 ? 5.700 ? 1218 100.000 5 1 2.910 3.260 ? 6389 ? 0.113 6.900 0.113 ? 5.700 ? 1116 100.000 6 1 3.260 3.760 ? 5639 ? 0.062 12.000 0.062 ? 5.700 ? 989 100.000 7 1 3.760 4.610 ? 4786 ? 0.037 19.400 0.037 ? 5.600 ? 849 100.000 8 1 4.610 6.510 ? 3738 ? 0.034 21.800 0.034 ? 5.400 ? 689 100.000 9 1 6.510 28.743 ? 2014 ? 0.020 31.200 0.020 ? 4.900 ? 412 98.900 10 1 # _refine.entry_id 3S91 _refine.ls_d_res_high 2.0600 _refine.ls_d_res_low 28.7400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9500 _refine.ls_number_reflns_obs 10985 _refine.ls_number_reflns_all 10990 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED.' _refine.ls_R_factor_all 0.1968 _refine.ls_R_factor_obs 0.1968 _refine.ls_R_factor_R_work 0.1950 _refine.ls_wR_factor_R_work 0.1622 _refine.ls_R_factor_R_free 0.2325 _refine.ls_wR_factor_R_free 0.1906 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 526 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.3817 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.6900 _refine.aniso_B[2][2] 1.6900 _refine.aniso_B[3][3] -2.5300 _refine.aniso_B[1][2] 0.8400 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9560 _refine.correlation_coeff_Fo_to_Fc_free 0.9470 _refine.overall_SU_R_Cruickshank_DPI 0.1596 _refine.overall_SU_R_free 0.1500 _refine.pdbx_overall_ESU_R_Free 0.1500 _refine.overall_SU_ML 0.1180 _refine.overall_SU_B 8.0090 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2NXB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8489 _refine.B_iso_max 97.300 _refine.B_iso_min 9.650 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 879 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 988 _refine_hist.d_res_high 2.0600 _refine_hist.d_res_low 28.7400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 946 0.016 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 607 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1291 1.626 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1481 0.969 3.001 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 106 4.427 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 44 38.788 25.682 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 157 14.088 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 1 9.667 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 136 0.083 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1024 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 176 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0600 _refine_ls_shell.d_res_low 2.1130 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.4900 _refine_ls_shell.number_reflns_R_work 738 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3080 _refine_ls_shell.R_factor_R_free 0.3170 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 779 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S91 _struct.title 'Crystal Structure of the first bromodomain of human BRD3 in complex with the inhibitor JQ1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S91 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;BRD3, Bromodomain containing protein 3, ORFX, RING3 like gene, RING3L, JQ1, Structural Genomics, Structural Genomics Consortium, SGC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? VAL A 24 ? THR A 36 VAL A 45 1 ? 10 HELX_P HELX_P2 2 VAL A 24 ? HIS A 32 ? VAL A 45 HIS A 53 1 ? 9 HELX_P HELX_P3 3 ALA A 35 ? TYR A 39 ? ALA A 56 TYR A 60 5 ? 5 HELX_P HELX_P4 4 ASP A 51 ? ILE A 56 ? ASP A 72 ILE A 77 1 ? 6 HELX_P HELX_P5 5 ASP A 61 ? ASN A 71 ? ASP A 82 ASN A 92 1 ? 11 HELX_P HELX_P6 6 SER A 76 ? ASN A 95 ? SER A 97 ASN A 116 1 ? 20 HELX_P HELX_P7 7 ASP A 99 ? ALA A 117 ? ASP A 120 ALA A 138 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A JQ1 1 ? 10 'BINDING SITE FOR RESIDUE JQ1 A 1' AC2 Software A IPA 145 ? 4 'BINDING SITE FOR RESIDUE IPA A 145' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 HOH D . ? HOH A 5 . ? 1_555 ? 2 AC1 10 TRP A 36 ? TRP A 57 . ? 11_655 ? 3 AC1 10 TRP A 36 ? TRP A 57 . ? 1_555 ? 4 AC1 10 PRO A 37 ? PRO A 58 . ? 1_555 ? 5 AC1 10 VAL A 42 ? VAL A 63 . ? 1_555 ? 6 AC1 10 LEU A 47 ? LEU A 68 . ? 1_555 ? 7 AC1 10 LEU A 49 ? LEU A 70 . ? 1_555 ? 8 AC1 10 ASN A 95 ? ASN A 116 . ? 1_555 ? 9 AC1 10 ILE A 101 ? ILE A 122 . ? 1_555 ? 10 AC1 10 MET A 104 ? MET A 125 . ? 1_555 ? 11 AC2 4 TYR A 73 ? TYR A 94 . ? 1_555 ? 12 AC2 4 GLU A 79 ? GLU A 100 . ? 1_555 ? 13 AC2 4 HOH D . ? HOH A 198 . ? 1_555 ? 14 AC2 4 HOH D . ? HOH A 198 . ? 12_554 ? # _atom_sites.entry_id 3S91 _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0.006670 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013340 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013005 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 22 ? ? ? A . n A 1 2 MET 2 23 ? ? ? A . n A 1 3 PRO 3 24 ? ? ? A . n A 1 4 GLU 4 25 ? ? ? A . n A 1 5 VAL 5 26 ? ? ? A . n A 1 6 SER 6 27 ? ? ? A . n A 1 7 ASN 7 28 ? ? ? A . n A 1 8 PRO 8 29 ? ? ? A . n A 1 9 SER 9 30 ? ? ? A . n A 1 10 LYS 10 31 ? ? ? A . n A 1 11 PRO 11 32 ? ? ? A . n A 1 12 GLY 12 33 ? ? ? A . n A 1 13 ARG 13 34 ? ? ? A . n A 1 14 LYS 14 35 ? ? ? A . n A 1 15 THR 15 36 36 THR THR A . n A 1 16 ASN 16 37 37 ASN ASN A . n A 1 17 GLN 17 38 38 GLN GLN A . n A 1 18 LEU 18 39 39 LEU LEU A . n A 1 19 GLN 19 40 40 GLN GLN A . n A 1 20 TYR 20 41 41 TYR TYR A . n A 1 21 MET 21 42 42 MET MET A . n A 1 22 GLN 22 43 43 GLN GLN A . n A 1 23 ASN 23 44 44 ASN ASN A . n A 1 24 VAL 24 45 45 VAL VAL A . n A 1 25 VAL 25 46 46 VAL VAL A . n A 1 26 VAL 26 47 47 VAL VAL A . n A 1 27 LYS 27 48 48 LYS LYS A . n A 1 28 THR 28 49 49 THR THR A . n A 1 29 LEU 29 50 50 LEU LEU A . n A 1 30 TRP 30 51 51 TRP TRP A . n A 1 31 LYS 31 52 52 LYS LYS A . n A 1 32 HIS 32 53 53 HIS HIS A . n A 1 33 GLN 33 54 54 GLN GLN A . n A 1 34 PHE 34 55 55 PHE PHE A . n A 1 35 ALA 35 56 56 ALA ALA A . n A 1 36 TRP 36 57 57 TRP TRP A . n A 1 37 PRO 37 58 58 PRO PRO A . n A 1 38 PHE 38 59 59 PHE PHE A . n A 1 39 TYR 39 60 60 TYR TYR A . n A 1 40 GLN 40 61 61 GLN GLN A . n A 1 41 PRO 41 62 62 PRO PRO A . n A 1 42 VAL 42 63 63 VAL VAL A . n A 1 43 ASP 43 64 64 ASP ASP A . n A 1 44 ALA 44 65 65 ALA ALA A . n A 1 45 ILE 45 66 66 ILE ILE A . n A 1 46 LYS 46 67 67 LYS LYS A . n A 1 47 LEU 47 68 68 LEU LEU A . n A 1 48 ASN 48 69 69 ASN ASN A . n A 1 49 LEU 49 70 70 LEU LEU A . n A 1 50 PRO 50 71 71 PRO PRO A . n A 1 51 ASP 51 72 72 ASP ASP A . n A 1 52 TYR 52 73 73 TYR TYR A . n A 1 53 HIS 53 74 74 HIS HIS A . n A 1 54 LYS 54 75 75 LYS LYS A . n A 1 55 ILE 55 76 76 ILE ILE A . n A 1 56 ILE 56 77 77 ILE ILE A . n A 1 57 LYS 57 78 78 LYS LYS A . n A 1 58 ASN 58 79 79 ASN ASN A . n A 1 59 PRO 59 80 80 PRO PRO A . n A 1 60 MET 60 81 81 MET MET A . n A 1 61 ASP 61 82 82 ASP ASP A . n A 1 62 MET 62 83 83 MET MET A . n A 1 63 GLY 63 84 84 GLY GLY A . n A 1 64 THR 64 85 85 THR THR A . n A 1 65 ILE 65 86 86 ILE ILE A . n A 1 66 LYS 66 87 87 LYS LYS A . n A 1 67 LYS 67 88 88 LYS LYS A . n A 1 68 ARG 68 89 89 ARG ARG A . n A 1 69 LEU 69 90 90 LEU LEU A . n A 1 70 GLU 70 91 91 GLU GLU A . n A 1 71 ASN 71 92 92 ASN ASN A . n A 1 72 ASN 72 93 93 ASN ASN A . n A 1 73 TYR 73 94 94 TYR TYR A . n A 1 74 TYR 74 95 95 TYR TYR A . n A 1 75 TRP 75 96 96 TRP TRP A . n A 1 76 SER 76 97 97 SER SER A . n A 1 77 ALA 77 98 98 ALA ALA A . n A 1 78 SER 78 99 99 SER SER A . n A 1 79 GLU 79 100 100 GLU GLU A . n A 1 80 CYS 80 101 101 CYS CYS A . n A 1 81 MET 81 102 102 MET MET A . n A 1 82 GLN 82 103 103 GLN GLN A . n A 1 83 ASP 83 104 104 ASP ASP A . n A 1 84 PHE 84 105 105 PHE PHE A . n A 1 85 ASN 85 106 106 ASN ASN A . n A 1 86 THR 86 107 107 THR THR A . n A 1 87 MET 87 108 108 MET MET A . n A 1 88 PHE 88 109 109 PHE PHE A . n A 1 89 THR 89 110 110 THR THR A . n A 1 90 ASN 90 111 111 ASN ASN A . n A 1 91 CYS 91 112 112 CYS CYS A . n A 1 92 TYR 92 113 113 TYR TYR A . n A 1 93 ILE 93 114 114 ILE ILE A . n A 1 94 TYR 94 115 115 TYR TYR A . n A 1 95 ASN 95 116 116 ASN ASN A . n A 1 96 LYS 96 117 117 LYS LYS A . n A 1 97 PRO 97 118 118 PRO PRO A . n A 1 98 THR 98 119 119 THR THR A . n A 1 99 ASP 99 120 120 ASP ASP A . n A 1 100 ASP 100 121 121 ASP ASP A . n A 1 101 ILE 101 122 122 ILE ILE A . n A 1 102 VAL 102 123 123 VAL VAL A . n A 1 103 LEU 103 124 124 LEU LEU A . n A 1 104 MET 104 125 125 MET MET A . n A 1 105 ALA 105 126 126 ALA ALA A . n A 1 106 GLN 106 127 127 GLN GLN A . n A 1 107 ALA 107 128 128 ALA ALA A . n A 1 108 LEU 108 129 129 LEU LEU A . n A 1 109 GLU 109 130 130 GLU GLU A . n A 1 110 LYS 110 131 131 LYS LYS A . n A 1 111 ILE 111 132 132 ILE ILE A . n A 1 112 PHE 112 133 133 PHE PHE A . n A 1 113 LEU 113 134 134 LEU LEU A . n A 1 114 GLN 114 135 135 GLN GLN A . n A 1 115 LYS 115 136 136 LYS LYS A . n A 1 116 VAL 116 137 137 VAL VAL A . n A 1 117 ALA 117 138 138 ALA ALA A . n A 1 118 GLN 118 139 139 GLN GLN A . n A 1 119 MET 119 140 140 MET MET A . n A 1 120 PRO 120 141 141 PRO PRO A . n A 1 121 GLN 121 142 142 GLN GLN A . n A 1 122 GLU 122 143 ? ? ? A . n A 1 123 GLU 123 144 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQ1 1 1 1 JQ1 JQ1 A . C 3 IPA 1 145 1 IPA IPA A . D 4 HOH 1 2 2 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 10 10 HOH HOH A . D 4 HOH 10 11 11 HOH HOH A . D 4 HOH 11 12 12 HOH HOH A . D 4 HOH 12 13 13 HOH HOH A . D 4 HOH 13 14 14 HOH HOH A . D 4 HOH 14 15 15 HOH HOH A . D 4 HOH 15 16 16 HOH HOH A . D 4 HOH 16 17 17 HOH HOH A . D 4 HOH 17 18 18 HOH HOH A . D 4 HOH 18 19 19 HOH HOH A . D 4 HOH 19 20 20 HOH HOH A . D 4 HOH 20 21 21 HOH HOH A . D 4 HOH 21 146 1 HOH HOH A . D 4 HOH 22 147 22 HOH HOH A . D 4 HOH 23 148 23 HOH HOH A . D 4 HOH 24 149 24 HOH HOH A . D 4 HOH 25 150 25 HOH HOH A . D 4 HOH 26 151 26 HOH HOH A . D 4 HOH 27 152 27 HOH HOH A . D 4 HOH 28 153 28 HOH HOH A . D 4 HOH 29 154 29 HOH HOH A . D 4 HOH 30 155 30 HOH HOH A . D 4 HOH 31 156 31 HOH HOH A . D 4 HOH 32 157 32 HOH HOH A . D 4 HOH 33 158 33 HOH HOH A . D 4 HOH 34 159 34 HOH HOH A . D 4 HOH 35 160 35 HOH HOH A . D 4 HOH 36 161 36 HOH HOH A . D 4 HOH 37 162 37 HOH HOH A . D 4 HOH 38 163 38 HOH HOH A . D 4 HOH 39 164 39 HOH HOH A . D 4 HOH 40 165 40 HOH HOH A . D 4 HOH 41 166 41 HOH HOH A . D 4 HOH 42 167 42 HOH HOH A . D 4 HOH 43 168 43 HOH HOH A . D 4 HOH 44 169 44 HOH HOH A . D 4 HOH 45 170 45 HOH HOH A . D 4 HOH 46 171 46 HOH HOH A . D 4 HOH 47 172 47 HOH HOH A . D 4 HOH 48 173 48 HOH HOH A . D 4 HOH 49 174 49 HOH HOH A . D 4 HOH 50 175 50 HOH HOH A . D 4 HOH 51 176 51 HOH HOH A . D 4 HOH 52 177 52 HOH HOH A . D 4 HOH 53 178 53 HOH HOH A . D 4 HOH 54 179 54 HOH HOH A . D 4 HOH 55 180 55 HOH HOH A . D 4 HOH 56 181 56 HOH HOH A . D 4 HOH 57 182 57 HOH HOH A . D 4 HOH 58 183 58 HOH HOH A . D 4 HOH 59 184 59 HOH HOH A . D 4 HOH 60 185 60 HOH HOH A . D 4 HOH 61 186 61 HOH HOH A . D 4 HOH 62 187 62 HOH HOH A . D 4 HOH 63 188 63 HOH HOH A . D 4 HOH 64 189 64 HOH HOH A . D 4 HOH 65 190 65 HOH HOH A . D 4 HOH 66 191 66 HOH HOH A . D 4 HOH 67 192 67 HOH HOH A . D 4 HOH 68 193 68 HOH HOH A . D 4 HOH 69 194 69 HOH HOH A . D 4 HOH 70 195 70 HOH HOH A . D 4 HOH 71 196 71 HOH HOH A . D 4 HOH 72 197 72 HOH HOH A . D 4 HOH 73 198 73 HOH HOH A . D 4 HOH 74 199 74 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1960 ? 1 MORE -8 ? 1 'SSA (A^2)' 11330 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 173 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.060 _diffrn_reflns.pdbx_d_res_low 28.743 _diffrn_reflns.pdbx_number_obs 11011 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.097 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 7.70 _diffrn_reflns.pdbx_redundancy 5.60 _diffrn_reflns.pdbx_percent_possible_obs 99.90 _diffrn_reflns.number 61487 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.51 28.74 ? ? 0.020 0.020 ? 4.90 98.90 1 4.61 6.51 ? ? 0.034 0.034 ? 5.40 100.00 1 3.76 4.61 ? ? 0.037 0.037 ? 5.60 100.00 1 3.26 3.76 ? ? 0.062 0.062 ? 5.70 100.00 1 2.91 3.26 ? ? 0.113 0.113 ? 5.70 100.00 1 2.66 2.91 ? ? 0.178 0.178 ? 5.70 100.00 1 2.46 2.66 ? ? 0.301 0.301 ? 5.70 100.00 1 2.30 2.46 ? ? 0.430 0.430 ? 5.70 100.00 1 2.17 2.30 ? ? 0.612 0.612 ? 5.70 100.00 1 2.06 2.17 ? ? 0.809 0.809 ? 5.20 99.90 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 34.7477 8.8891 10.7011 0.0955 0.0271 0.0501 -0.0064 -0.0185 0.0135 3.9304 2.6743 6.0747 0.5248 0.2458 -0.6148 0.1580 -0.2313 0.0734 -0.0177 0.1755 -0.0779 0.1501 -0.4006 -0.1258 'X-RAY DIFFRACTION' 2 ? refined 33.4577 8.6423 4.0606 0.0508 0.0199 0.0418 -0.0134 -0.0181 0.0252 6.9110 3.5916 6.0495 -3.2910 2.4443 -0.4919 0.0109 -0.0602 0.0493 -0.0341 0.1390 -0.1052 0.1095 -0.2738 -0.0932 'X-RAY DIFFRACTION' 3 ? refined 26.4106 -1.5244 7.7978 0.1140 0.2062 0.0547 -0.0945 0.0020 -0.0005 16.7123 3.2110 16.8288 1.8459 7.5676 1.4052 0.0358 -0.1103 0.0745 -0.0825 0.0234 0.3424 0.2251 0.5297 -1.6473 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 36 A 77 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 78 A 123 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 124 A 142 ? . . . . ? # _pdbx_phasing_MR.entry_id 3S91 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 48.770 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 28.740 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 28.740 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 IPA _pdbx_validate_close_contact.auth_seq_id_1 145 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 198 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 112 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 112 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.704 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.108 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 70 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -118.44 _pdbx_validate_torsion.psi 78.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 36 ? OG1 ? A THR 15 OG1 2 1 Y 1 A THR 36 ? CG2 ? A THR 15 CG2 3 1 Y 1 A ASN 37 ? CG ? A ASN 16 CG 4 1 Y 1 A ASN 37 ? OD1 ? A ASN 16 OD1 5 1 Y 1 A ASN 37 ? ND2 ? A ASN 16 ND2 6 1 Y 1 A GLN 40 ? CD ? A GLN 19 CD 7 1 Y 1 A GLN 40 ? OE1 ? A GLN 19 OE1 8 1 Y 1 A GLN 40 ? NE2 ? A GLN 19 NE2 9 1 Y 1 A LYS 48 ? NZ ? A LYS 27 NZ 10 1 Y 1 A LYS 52 ? CD ? A LYS 31 CD 11 1 Y 1 A LYS 52 ? CE ? A LYS 31 CE 12 1 Y 1 A LYS 52 ? NZ ? A LYS 31 NZ 13 1 Y 1 A LYS 75 ? NZ ? A LYS 54 NZ 14 1 Y 1 A LYS 117 ? CD ? A LYS 96 CD 15 1 Y 1 A LYS 117 ? CE ? A LYS 96 CE 16 1 Y 1 A LYS 117 ? NZ ? A LYS 96 NZ 17 1 Y 1 A GLN 142 ? CG ? A GLN 121 CG 18 1 Y 1 A GLN 142 ? CD ? A GLN 121 CD 19 1 Y 1 A GLN 142 ? OE1 ? A GLN 121 OE1 20 1 Y 1 A GLN 142 ? NE2 ? A GLN 121 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 22 ? A SER 1 2 1 Y 1 A MET 23 ? A MET 2 3 1 Y 1 A PRO 24 ? A PRO 3 4 1 Y 1 A GLU 25 ? A GLU 4 5 1 Y 1 A VAL 26 ? A VAL 5 6 1 Y 1 A SER 27 ? A SER 6 7 1 Y 1 A ASN 28 ? A ASN 7 8 1 Y 1 A PRO 29 ? A PRO 8 9 1 Y 1 A SER 30 ? A SER 9 10 1 Y 1 A LYS 31 ? A LYS 10 11 1 Y 1 A PRO 32 ? A PRO 11 12 1 Y 1 A GLY 33 ? A GLY 12 13 1 Y 1 A ARG 34 ? A ARG 13 14 1 Y 1 A LYS 35 ? A LYS 14 15 1 Y 1 A GLU 143 ? A GLU 122 16 1 Y 1 A GLU 144 ? A GLU 123 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 IPA C1 C N N 183 IPA C2 C N N 184 IPA C3 C N N 185 IPA O2 O N N 186 IPA H11 H N N 187 IPA H12 H N N 188 IPA H13 H N N 189 IPA H2 H N N 190 IPA H31 H N N 191 IPA H32 H N N 192 IPA H33 H N N 193 IPA HO2 H N N 194 JQ1 CAA C N N 195 JQ1 CAB C N N 196 JQ1 CAC C N N 197 JQ1 CAD C N N 198 JQ1 CAE C N N 199 JQ1 CAF C N N 200 JQ1 OAG O N N 201 JQ1 CLAH CL N N 202 JQ1 CAI C Y N 203 JQ1 CAJ C Y N 204 JQ1 CAK C Y N 205 JQ1 CAL C Y N 206 JQ1 CAM C N N 207 JQ1 NAN N N N 208 JQ1 NAO N Y N 209 JQ1 NAP N Y N 210 JQ1 OAQ O N N 211 JQ1 SAR S Y N 212 JQ1 CAS C N N 213 JQ1 CAT C N N 214 JQ1 CAU C Y N 215 JQ1 CAV C Y N 216 JQ1 CAW C Y N 217 JQ1 CAX C Y N 218 JQ1 CAY C Y N 219 JQ1 CAZ C Y N 220 JQ1 CBA C Y N 221 JQ1 CBB C Y N 222 JQ1 CBC C N S 223 JQ1 NBD N Y N 224 JQ1 CBE C N N 225 JQ1 HAA H N N 226 JQ1 HAAA H N N 227 JQ1 HAAB H N N 228 JQ1 HAB H N N 229 JQ1 HABA H N N 230 JQ1 HABB H N N 231 JQ1 HAC H N N 232 JQ1 HACA H N N 233 JQ1 HACB H N N 234 JQ1 HAD H N N 235 JQ1 HADA H N N 236 JQ1 HADB H N N 237 JQ1 HAE H N N 238 JQ1 HAEA H N N 239 JQ1 HAEB H N N 240 JQ1 HAF H N N 241 JQ1 HAFA H N N 242 JQ1 HAFB H N N 243 JQ1 HAI H N N 244 JQ1 HAJ H N N 245 JQ1 HAK H N N 246 JQ1 HAL H N N 247 JQ1 HAM H N N 248 JQ1 HAMA H N N 249 JQ1 HNAP H N N 250 JQ1 HBC H N N 251 LEU N N N N 252 LEU CA C N S 253 LEU C C N N 254 LEU O O N N 255 LEU CB C N N 256 LEU CG C N N 257 LEU CD1 C N N 258 LEU CD2 C N N 259 LEU OXT O N N 260 LEU H H N N 261 LEU H2 H N N 262 LEU HA H N N 263 LEU HB2 H N N 264 LEU HB3 H N N 265 LEU HG H N N 266 LEU HD11 H N N 267 LEU HD12 H N N 268 LEU HD13 H N N 269 LEU HD21 H N N 270 LEU HD22 H N N 271 LEU HD23 H N N 272 LEU HXT H N N 273 LYS N N N N 274 LYS CA C N S 275 LYS C C N N 276 LYS O O N N 277 LYS CB C N N 278 LYS CG C N N 279 LYS CD C N N 280 LYS CE C N N 281 LYS NZ N N N 282 LYS OXT O N N 283 LYS H H N N 284 LYS H2 H N N 285 LYS HA H N N 286 LYS HB2 H N N 287 LYS HB3 H N N 288 LYS HG2 H N N 289 LYS HG3 H N N 290 LYS HD2 H N N 291 LYS HD3 H N N 292 LYS HE2 H N N 293 LYS HE3 H N N 294 LYS HZ1 H N N 295 LYS HZ2 H N N 296 LYS HZ3 H N N 297 LYS HXT H N N 298 MET N N N N 299 MET CA C N S 300 MET C C N N 301 MET O O N N 302 MET CB C N N 303 MET CG C N N 304 MET SD S N N 305 MET CE C N N 306 MET OXT O N N 307 MET H H N N 308 MET H2 H N N 309 MET HA H N N 310 MET HB2 H N N 311 MET HB3 H N N 312 MET HG2 H N N 313 MET HG3 H N N 314 MET HE1 H N N 315 MET HE2 H N N 316 MET HE3 H N N 317 MET HXT H N N 318 PHE N N N N 319 PHE CA C N S 320 PHE C C N N 321 PHE O O N N 322 PHE CB C N N 323 PHE CG C Y N 324 PHE CD1 C Y N 325 PHE CD2 C Y N 326 PHE CE1 C Y N 327 PHE CE2 C Y N 328 PHE CZ C Y N 329 PHE OXT O N N 330 PHE H H N N 331 PHE H2 H N N 332 PHE HA H N N 333 PHE HB2 H N N 334 PHE HB3 H N N 335 PHE HD1 H N N 336 PHE HD2 H N N 337 PHE HE1 H N N 338 PHE HE2 H N N 339 PHE HZ H N N 340 PHE HXT H N N 341 PRO N N N N 342 PRO CA C N S 343 PRO C C N N 344 PRO O O N N 345 PRO CB C N N 346 PRO CG C N N 347 PRO CD C N N 348 PRO OXT O N N 349 PRO H H N N 350 PRO HA H N N 351 PRO HB2 H N N 352 PRO HB3 H N N 353 PRO HG2 H N N 354 PRO HG3 H N N 355 PRO HD2 H N N 356 PRO HD3 H N N 357 PRO HXT H N N 358 SER N N N N 359 SER CA C N S 360 SER C C N N 361 SER O O N N 362 SER CB C N N 363 SER OG O N N 364 SER OXT O N N 365 SER H H N N 366 SER H2 H N N 367 SER HA H N N 368 SER HB2 H N N 369 SER HB3 H N N 370 SER HG H N N 371 SER HXT H N N 372 THR N N N N 373 THR CA C N S 374 THR C C N N 375 THR O O N N 376 THR CB C N R 377 THR OG1 O N N 378 THR CG2 C N N 379 THR OXT O N N 380 THR H H N N 381 THR H2 H N N 382 THR HA H N N 383 THR HB H N N 384 THR HG1 H N N 385 THR HG21 H N N 386 THR HG22 H N N 387 THR HG23 H N N 388 THR HXT H N N 389 TRP N N N N 390 TRP CA C N S 391 TRP C C N N 392 TRP O O N N 393 TRP CB C N N 394 TRP CG C Y N 395 TRP CD1 C Y N 396 TRP CD2 C Y N 397 TRP NE1 N Y N 398 TRP CE2 C Y N 399 TRP CE3 C Y N 400 TRP CZ2 C Y N 401 TRP CZ3 C Y N 402 TRP CH2 C Y N 403 TRP OXT O N N 404 TRP H H N N 405 TRP H2 H N N 406 TRP HA H N N 407 TRP HB2 H N N 408 TRP HB3 H N N 409 TRP HD1 H N N 410 TRP HE1 H N N 411 TRP HE3 H N N 412 TRP HZ2 H N N 413 TRP HZ3 H N N 414 TRP HH2 H N N 415 TRP HXT H N N 416 TYR N N N N 417 TYR CA C N S 418 TYR C C N N 419 TYR O O N N 420 TYR CB C N N 421 TYR CG C Y N 422 TYR CD1 C Y N 423 TYR CD2 C Y N 424 TYR CE1 C Y N 425 TYR CE2 C Y N 426 TYR CZ C Y N 427 TYR OH O N N 428 TYR OXT O N N 429 TYR H H N N 430 TYR H2 H N N 431 TYR HA H N N 432 TYR HB2 H N N 433 TYR HB3 H N N 434 TYR HD1 H N N 435 TYR HD2 H N N 436 TYR HE1 H N N 437 TYR HE2 H N N 438 TYR HH H N N 439 TYR HXT H N N 440 VAL N N N N 441 VAL CA C N S 442 VAL C C N N 443 VAL O O N N 444 VAL CB C N N 445 VAL CG1 C N N 446 VAL CG2 C N N 447 VAL OXT O N N 448 VAL H H N N 449 VAL H2 H N N 450 VAL HA H N N 451 VAL HB H N N 452 VAL HG11 H N N 453 VAL HG12 H N N 454 VAL HG13 H N N 455 VAL HG21 H N N 456 VAL HG22 H N N 457 VAL HG23 H N N 458 VAL HXT H N N 459 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 IPA C1 C2 sing N N 173 IPA C1 H11 sing N N 174 IPA C1 H12 sing N N 175 IPA C1 H13 sing N N 176 IPA C2 C3 sing N N 177 IPA C2 O2 sing N N 178 IPA C2 H2 sing N N 179 IPA C3 H31 sing N N 180 IPA C3 H32 sing N N 181 IPA C3 H33 sing N N 182 IPA O2 HO2 sing N N 183 JQ1 CAA CAV sing N N 184 JQ1 CAB CAX sing N N 185 JQ1 CAC CAY sing N N 186 JQ1 CAD CBE sing N N 187 JQ1 CAE CBE sing N N 188 JQ1 CAF CBE sing N N 189 JQ1 OAG CAS doub N N 190 JQ1 CLAH CAU sing N N 191 JQ1 CAI CAK doub Y N 192 JQ1 CAI CAU sing Y N 193 JQ1 CAJ CAL sing Y N 194 JQ1 CAJ CAU doub Y N 195 JQ1 CAK CAW sing Y N 196 JQ1 CAL CAW doub Y N 197 JQ1 CAM CAS sing N N 198 JQ1 CAM CBC sing N N 199 JQ1 NAN CAT doub N N 200 JQ1 NAN CBC sing N N 201 JQ1 NAO NAP sing Y N 202 JQ1 NAO CAV doub Y N 203 JQ1 NAP CAZ sing Y N 204 JQ1 OAQ CAS sing N N 205 JQ1 OAQ CBE sing N N 206 JQ1 SAR CAX sing Y N 207 JQ1 SAR CBB sing Y N 208 JQ1 CAT CAW sing N N 209 JQ1 CAT CBA sing N N 210 JQ1 CAV NBD sing Y N 211 JQ1 CAX CAY doub Y N 212 JQ1 CAY CBA sing Y N 213 JQ1 CAZ CBC sing N N 214 JQ1 CAZ NBD doub Y N 215 JQ1 CBA CBB doub Y N 216 JQ1 CBB NBD sing Y N 217 JQ1 CAA HAA sing N N 218 JQ1 CAA HAAA sing N N 219 JQ1 CAA HAAB sing N N 220 JQ1 CAB HAB sing N N 221 JQ1 CAB HABA sing N N 222 JQ1 CAB HABB sing N N 223 JQ1 CAC HAC sing N N 224 JQ1 CAC HACA sing N N 225 JQ1 CAC HACB sing N N 226 JQ1 CAD HAD sing N N 227 JQ1 CAD HADA sing N N 228 JQ1 CAD HADB sing N N 229 JQ1 CAE HAE sing N N 230 JQ1 CAE HAEA sing N N 231 JQ1 CAE HAEB sing N N 232 JQ1 CAF HAF sing N N 233 JQ1 CAF HAFA sing N N 234 JQ1 CAF HAFB sing N N 235 JQ1 CAI HAI sing N N 236 JQ1 CAJ HAJ sing N N 237 JQ1 CAK HAK sing N N 238 JQ1 CAL HAL sing N N 239 JQ1 CAM HAM sing N N 240 JQ1 CAM HAMA sing N N 241 JQ1 NAP HNAP sing N N 242 JQ1 CBC HBC sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MET N CA sing N N 289 MET N H sing N N 290 MET N H2 sing N N 291 MET CA C sing N N 292 MET CA CB sing N N 293 MET CA HA sing N N 294 MET C O doub N N 295 MET C OXT sing N N 296 MET CB CG sing N N 297 MET CB HB2 sing N N 298 MET CB HB3 sing N N 299 MET CG SD sing N N 300 MET CG HG2 sing N N 301 MET CG HG3 sing N N 302 MET SD CE sing N N 303 MET CE HE1 sing N N 304 MET CE HE2 sing N N 305 MET CE HE3 sing N N 306 MET OXT HXT sing N N 307 PHE N CA sing N N 308 PHE N H sing N N 309 PHE N H2 sing N N 310 PHE CA C sing N N 311 PHE CA CB sing N N 312 PHE CA HA sing N N 313 PHE C O doub N N 314 PHE C OXT sing N N 315 PHE CB CG sing N N 316 PHE CB HB2 sing N N 317 PHE CB HB3 sing N N 318 PHE CG CD1 doub Y N 319 PHE CG CD2 sing Y N 320 PHE CD1 CE1 sing Y N 321 PHE CD1 HD1 sing N N 322 PHE CD2 CE2 doub Y N 323 PHE CD2 HD2 sing N N 324 PHE CE1 CZ doub Y N 325 PHE CE1 HE1 sing N N 326 PHE CE2 CZ sing Y N 327 PHE CE2 HE2 sing N N 328 PHE CZ HZ sing N N 329 PHE OXT HXT sing N N 330 PRO N CA sing N N 331 PRO N CD sing N N 332 PRO N H sing N N 333 PRO CA C sing N N 334 PRO CA CB sing N N 335 PRO CA HA sing N N 336 PRO C O doub N N 337 PRO C OXT sing N N 338 PRO CB CG sing N N 339 PRO CB HB2 sing N N 340 PRO CB HB3 sing N N 341 PRO CG CD sing N N 342 PRO CG HG2 sing N N 343 PRO CG HG3 sing N N 344 PRO CD HD2 sing N N 345 PRO CD HD3 sing N N 346 PRO OXT HXT sing N N 347 SER N CA sing N N 348 SER N H sing N N 349 SER N H2 sing N N 350 SER CA C sing N N 351 SER CA CB sing N N 352 SER CA HA sing N N 353 SER C O doub N N 354 SER C OXT sing N N 355 SER CB OG sing N N 356 SER CB HB2 sing N N 357 SER CB HB3 sing N N 358 SER OG HG sing N N 359 SER OXT HXT sing N N 360 THR N CA sing N N 361 THR N H sing N N 362 THR N H2 sing N N 363 THR CA C sing N N 364 THR CA CB sing N N 365 THR CA HA sing N N 366 THR C O doub N N 367 THR C OXT sing N N 368 THR CB OG1 sing N N 369 THR CB CG2 sing N N 370 THR CB HB sing N N 371 THR OG1 HG1 sing N N 372 THR CG2 HG21 sing N N 373 THR CG2 HG22 sing N N 374 THR CG2 HG23 sing N N 375 THR OXT HXT sing N N 376 TRP N CA sing N N 377 TRP N H sing N N 378 TRP N H2 sing N N 379 TRP CA C sing N N 380 TRP CA CB sing N N 381 TRP CA HA sing N N 382 TRP C O doub N N 383 TRP C OXT sing N N 384 TRP CB CG sing N N 385 TRP CB HB2 sing N N 386 TRP CB HB3 sing N N 387 TRP CG CD1 doub Y N 388 TRP CG CD2 sing Y N 389 TRP CD1 NE1 sing Y N 390 TRP CD1 HD1 sing N N 391 TRP CD2 CE2 doub Y N 392 TRP CD2 CE3 sing Y N 393 TRP NE1 CE2 sing Y N 394 TRP NE1 HE1 sing N N 395 TRP CE2 CZ2 sing Y N 396 TRP CE3 CZ3 doub Y N 397 TRP CE3 HE3 sing N N 398 TRP CZ2 CH2 doub Y N 399 TRP CZ2 HZ2 sing N N 400 TRP CZ3 CH2 sing Y N 401 TRP CZ3 HZ3 sing N N 402 TRP CH2 HH2 sing N N 403 TRP OXT HXT sing N N 404 TYR N CA sing N N 405 TYR N H sing N N 406 TYR N H2 sing N N 407 TYR CA C sing N N 408 TYR CA CB sing N N 409 TYR CA HA sing N N 410 TYR C O doub N N 411 TYR C OXT sing N N 412 TYR CB CG sing N N 413 TYR CB HB2 sing N N 414 TYR CB HB3 sing N N 415 TYR CG CD1 doub Y N 416 TYR CG CD2 sing Y N 417 TYR CD1 CE1 sing Y N 418 TYR CD1 HD1 sing N N 419 TYR CD2 CE2 doub Y N 420 TYR CD2 HD2 sing N N 421 TYR CE1 CZ doub Y N 422 TYR CE1 HE1 sing N N 423 TYR CE2 CZ sing Y N 424 TYR CE2 HE2 sing N N 425 TYR CZ OH sing N N 426 TYR OH HH sing N N 427 TYR OXT HXT sing N N 428 VAL N CA sing N N 429 VAL N H sing N N 430 VAL N H2 sing N N 431 VAL CA C sing N N 432 VAL CA CB sing N N 433 VAL CA HA sing N N 434 VAL C O doub N N 435 VAL C OXT sing N N 436 VAL CB CG1 sing N N 437 VAL CB CG2 sing N N 438 VAL CB HB sing N N 439 VAL CG1 HG11 sing N N 440 VAL CG1 HG12 sing N N 441 VAL CG1 HG13 sing N N 442 VAL CG2 HG21 sing N N 443 VAL CG2 HG22 sing N N 444 VAL CG2 HG23 sing N N 445 VAL OXT HXT sing N N 446 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; JQ1 3 'ISOPROPYL ALCOHOL' IPA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NXB _pdbx_initial_refinement_model.details 'PDB entry 2NXB' #