data_3S92 # _entry.id 3S92 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S92 pdb_00003s92 10.2210/pdb3s92/pdb RCSB RCSB065914 ? ? WWPDB D_1000065914 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3S91 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3S92 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Qi, J.' 3 'Keates, T.' 4 'Felletar, I.' 5 'Fedorov, O.' 6 'Muniz, J.' 7 'von Delft, F.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Weigelt, J.' 11 'Bountra, C.' 12 'Bradner, J.E.' 13 'Knapp, S.' 14 'Structural Genomics Consortium (SGC)' 15 # _citation.id primary _citation.title 'Crystal Structure of the second bromodomain of human BRD3 in complex with the inhibitor JQ1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Qi, J.' 3 ? primary 'Keates, T.' 4 ? primary 'Felletar, I.' 5 ? primary 'Fedorov, O.' 6 ? primary 'Muniz, J.' 7 ? primary 'von Delft, F.' 8 ? primary 'Arrowsmith, C.H.' 9 ? primary 'Edwards, A.M.' 10 ? primary 'Weigelt, J.' 11 ? primary 'Bountra, C.' 12 ? primary 'Bradner, J.E.' 13 ? primary 'Knapp, S.' 14 ? # _cell.entry_id 3S92 _cell.length_a 33.360 _cell.length_b 38.020 _cell.length_c 85.790 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S92 _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 3' 13307.399 1 ? ? ? ? 2 non-polymer syn ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; 457.996 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 193 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RING3-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLM FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLM FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 HIS n 1 9 LEU n 1 10 ARG n 1 11 TYR n 1 12 CYS n 1 13 ASP n 1 14 SER n 1 15 ILE n 1 16 LEU n 1 17 ARG n 1 18 GLU n 1 19 MET n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 GLU n 1 39 ALA n 1 40 LEU n 1 41 GLU n 1 42 LEU n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 ASP n 1 64 GLY n 1 65 ARG n 1 66 GLU n 1 67 TYR n 1 68 PRO n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLY n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 GLU n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 MET n 1 108 ARG n 1 109 PHE n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD3, KIAA0043, RING3L' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD3_HUMAN _struct_ref.pdbx_db_accession Q15059 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFS NCYKYNPPDHEVVAMARKLQDVFEMRFAKMP ; _struct_ref.pdbx_align_begin 306 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S92 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15059 _struct_ref_seq.db_align_beg 306 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 416 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 306 _struct_ref_seq.pdbx_auth_seq_align_end 416 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3S92 SER A 1 ? UNP Q15059 ? ? 'expression tag' 304 1 1 3S92 MET A 2 ? UNP Q15059 ? ? 'expression tag' 305 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JQ1 non-polymer . ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; ? 'C23 H26 Cl N4 O2 S 1' 457.996 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3S92 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.83 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2M (NH4)2Hcit, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-02-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 # _reflns.entry_id 3S92 _reflns.d_resolution_high 1.360 _reflns.d_resolution_low 28.452 _reflns.number_all 24205 _reflns.number_obs 24181 _reflns.pdbx_netI_over_sigmaI 11.400 _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_redundancy 4.400 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.B_iso_Wilson_estimate 13.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.360 1.430 ? 15374 ? 0.730 1.100 0.730 ? 4.500 ? 3446 99.900 1 1 1.430 1.520 ? 14789 ? 0.465 1.700 0.465 ? 4.500 ? 3292 100.000 2 1 1.520 1.630 ? 13883 ? 0.298 2.600 0.298 ? 4.500 ? 3093 99.900 3 1 1.630 1.760 ? 13061 ? 0.193 3.900 0.193 ? 4.500 ? 2907 100.000 4 1 1.760 1.920 ? 11826 ? 0.114 6.600 0.114 ? 4.400 ? 2666 99.900 5 1 1.920 2.150 ? 10708 ? 0.068 10.400 0.068 ? 4.400 ? 2423 99.900 6 1 2.150 2.480 ? 9377 ? 0.065 9.700 0.065 ? 4.300 ? 2174 100.000 7 1 2.480 3.040 ? 7390 ? 0.063 9.700 0.063 ? 4.000 ? 1846 99.700 8 1 3.040 4.300 ? 6707 ? 0.025 22.400 0.025 ? 4.600 ? 1472 100.000 9 1 4.300 28.452 ? 3586 ? 0.021 23.700 0.021 ? 4.200 ? 862 98.800 10 1 # _refine.entry_id 3S92 _refine.ls_d_res_high 1.3600 _refine.ls_d_res_low 28.4500 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7900 _refine.ls_number_reflns_obs 24149 _refine.ls_number_reflns_all 24200 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.ls_R_factor_all 0.1342 _refine.ls_R_factor_obs 0.1342 _refine.ls_R_factor_R_work 0.1314 _refine.ls_wR_factor_R_work 0.1269 _refine.ls_R_factor_R_free 0.1865 _refine.ls_wR_factor_R_free 0.1820 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1233 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.1558 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.2800 _refine.aniso_B[2][2] -0.0500 _refine.aniso_B[3][3] -0.2300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9780 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.overall_SU_R_Cruickshank_DPI 0.0568 _refine.overall_SU_R_free 0.0588 _refine.pdbx_overall_ESU_R_Free 0.0590 _refine.overall_SU_ML 0.0350 _refine.overall_SU_B 1.9550 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2OO1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9046 _refine.B_iso_max 103.310 _refine.B_iso_min 3.880 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 903 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 193 _refine_hist.number_atoms_total 1131 _refine_hist.d_res_high 1.3600 _refine_hist.d_res_low 28.4500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1029 0.014 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 714 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1397 1.642 1.996 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1715 0.974 3.001 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 116 5.529 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 49 31.565 22.449 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 176 12.453 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 24.897 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 140 0.092 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1128 0.010 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 217 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 586 3.884 3.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 224 2.344 3.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 949 4.990 5.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 443 6.998 8.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 448 8.545 11.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1743 3.359 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 193 14.772 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1711 6.524 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.3600 _refine_ls_shell.d_res_low 1.3950 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.7100 _refine_ls_shell.number_reflns_R_work 1669 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2810 _refine_ls_shell.R_factor_R_free 0.3460 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1745 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S92 _struct.title 'Crystal Structure of the second bromodomain of human BRD3 in complex with the inhibitor JQ1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S92 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text ;BRD3, Bromodomain containing protein 3, ORFX, RING3 like gene, RING3L, JQ1, Structural Genomics, Structural Genomics Consortium, SGC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? SER A 21 ? SER A 309 SER A 324 1 ? 16 HELX_P HELX_P2 2 HIS A 24 ? TRP A 29 ? HIS A 327 TRP A 332 1 ? 6 HELX_P HELX_P3 3 PRO A 30 ? TYR A 32 ? PRO A 333 TYR A 335 5 ? 3 HELX_P HELX_P4 4 ASP A 44 ? ILE A 49 ? ASP A 347 ILE A 352 1 ? 6 HELX_P HELX_P5 5 ASP A 54 ? GLY A 64 ? ASP A 357 GLY A 367 1 ? 11 HELX_P HELX_P6 6 ASP A 69 ? ASN A 88 ? ASP A 372 ASN A 391 1 ? 20 HELX_P HELX_P7 7 HIS A 92 ? LYS A 111 ? HIS A 395 LYS A 414 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A JQ1 1 ? 14 'BINDING SITE FOR RESIDUE JQ1 A 1' AC2 Software A EDO 417 ? 6 'BINDING SITE FOR RESIDUE EDO A 417' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 HOH D . ? HOH A 2 . ? 1_555 ? 2 AC1 14 HOH D . ? HOH A 116 . ? 1_555 ? 3 AC1 14 PRO A 30 ? PRO A 333 . ? 1_555 ? 4 AC1 14 VAL A 35 ? VAL A 338 . ? 1_555 ? 5 AC1 14 ALA A 39 ? ALA A 342 . ? 3_755 ? 6 AC1 14 LEU A 40 ? LEU A 343 . ? 3_755 ? 7 AC1 14 LEU A 40 ? LEU A 343 . ? 1_555 ? 8 AC1 14 GLU A 41 ? GLU A 344 . ? 3_755 ? 9 AC1 14 LEU A 42 ? LEU A 345 . ? 1_555 ? 10 AC1 14 ASN A 88 ? ASN A 391 . ? 1_555 ? 11 AC1 14 HIS A 92 ? HIS A 395 . ? 1_555 ? 12 AC1 14 GLU A 93 ? GLU A 396 . ? 1_555 ? 13 AC1 14 VAL A 94 ? VAL A 397 . ? 1_555 ? 14 AC1 14 MET A 97 ? MET A 400 . ? 1_555 ? 15 AC2 6 HOH D . ? HOH A 154 . ? 1_555 ? 16 AC2 6 HOH D . ? HOH A 154 . ? 4_565 ? 17 AC2 6 GLN A 102 ? GLN A 405 . ? 4_565 ? 18 AC2 6 GLN A 102 ? GLN A 405 . ? 1_555 ? 19 AC2 6 ASP A 103 ? ASP A 406 . ? 1_555 ? 20 AC2 6 ASP A 103 ? ASP A 406 . ? 4_565 ? # _atom_sites.entry_id 3S92 _atom_sites.fract_transf_matrix[1][1] 0.029976 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026302 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011656 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 304 ? ? ? A . n A 1 2 MET 2 305 ? ? ? A . n A 1 3 GLY 3 306 ? ? ? A . n A 1 4 LYS 4 307 307 LYS LYS A . n A 1 5 LEU 5 308 308 LEU LEU A . n A 1 6 SER 6 309 309 SER SER A . n A 1 7 GLU 7 310 310 GLU GLU A . n A 1 8 HIS 8 311 311 HIS HIS A . n A 1 9 LEU 9 312 312 LEU LEU A . n A 1 10 ARG 10 313 313 ARG ARG A . n A 1 11 TYR 11 314 314 TYR TYR A . n A 1 12 CYS 12 315 315 CYS CYS A . n A 1 13 ASP 13 316 316 ASP ASP A . n A 1 14 SER 14 317 317 SER SER A . n A 1 15 ILE 15 318 318 ILE ILE A . n A 1 16 LEU 16 319 319 LEU LEU A . n A 1 17 ARG 17 320 320 ARG ARG A . n A 1 18 GLU 18 321 321 GLU GLU A . n A 1 19 MET 19 322 322 MET MET A . n A 1 20 LEU 20 323 323 LEU LEU A . n A 1 21 SER 21 324 324 SER SER A . n A 1 22 LYS 22 325 325 LYS LYS A . n A 1 23 LYS 23 326 326 LYS LYS A . n A 1 24 HIS 24 327 327 HIS HIS A . n A 1 25 ALA 25 328 328 ALA ALA A . n A 1 26 ALA 26 329 329 ALA ALA A . n A 1 27 TYR 27 330 330 TYR TYR A . n A 1 28 ALA 28 331 331 ALA ALA A . n A 1 29 TRP 29 332 332 TRP TRP A . n A 1 30 PRO 30 333 333 PRO PRO A . n A 1 31 PHE 31 334 334 PHE PHE A . n A 1 32 TYR 32 335 335 TYR TYR A . n A 1 33 LYS 33 336 336 LYS LYS A . n A 1 34 PRO 34 337 337 PRO PRO A . n A 1 35 VAL 35 338 338 VAL VAL A . n A 1 36 ASP 36 339 339 ASP ASP A . n A 1 37 ALA 37 340 340 ALA ALA A . n A 1 38 GLU 38 341 341 GLU GLU A . n A 1 39 ALA 39 342 342 ALA ALA A . n A 1 40 LEU 40 343 343 LEU LEU A . n A 1 41 GLU 41 344 344 GLU GLU A . n A 1 42 LEU 42 345 345 LEU LEU A . n A 1 43 HIS 43 346 346 HIS HIS A . n A 1 44 ASP 44 347 347 ASP ASP A . n A 1 45 TYR 45 348 348 TYR TYR A . n A 1 46 HIS 46 349 349 HIS HIS A . n A 1 47 ASP 47 350 350 ASP ASP A . n A 1 48 ILE 48 351 351 ILE ILE A . n A 1 49 ILE 49 352 352 ILE ILE A . n A 1 50 LYS 50 353 353 LYS LYS A . n A 1 51 HIS 51 354 354 HIS HIS A . n A 1 52 PRO 52 355 355 PRO PRO A . n A 1 53 MET 53 356 356 MET MET A . n A 1 54 ASP 54 357 357 ASP ASP A . n A 1 55 LEU 55 358 358 LEU LEU A . n A 1 56 SER 56 359 359 SER SER A . n A 1 57 THR 57 360 360 THR THR A . n A 1 58 VAL 58 361 361 VAL VAL A . n A 1 59 LYS 59 362 362 LYS LYS A . n A 1 60 ARG 60 363 363 ARG ARG A . n A 1 61 LYS 61 364 364 LYS LYS A . n A 1 62 MET 62 365 365 MET MET A . n A 1 63 ASP 63 366 366 ASP ASP A . n A 1 64 GLY 64 367 367 GLY GLY A . n A 1 65 ARG 65 368 368 ARG ARG A . n A 1 66 GLU 66 369 369 GLU GLU A . n A 1 67 TYR 67 370 370 TYR TYR A . n A 1 68 PRO 68 371 371 PRO PRO A . n A 1 69 ASP 69 372 372 ASP ASP A . n A 1 70 ALA 70 373 373 ALA ALA A . n A 1 71 GLN 71 374 374 GLN GLN A . n A 1 72 GLY 72 375 375 GLY GLY A . n A 1 73 PHE 73 376 376 PHE PHE A . n A 1 74 ALA 74 377 377 ALA ALA A . n A 1 75 ALA 75 378 378 ALA ALA A . n A 1 76 ASP 76 379 379 ASP ASP A . n A 1 77 VAL 77 380 380 VAL VAL A . n A 1 78 ARG 78 381 381 ARG ARG A . n A 1 79 LEU 79 382 382 LEU LEU A . n A 1 80 MET 80 383 383 MET MET A . n A 1 81 PHE 81 384 384 PHE PHE A . n A 1 82 SER 82 385 385 SER SER A . n A 1 83 ASN 83 386 386 ASN ASN A . n A 1 84 CYS 84 387 387 CYS CYS A . n A 1 85 TYR 85 388 388 TYR TYR A . n A 1 86 LYS 86 389 389 LYS LYS A . n A 1 87 TYR 87 390 390 TYR TYR A . n A 1 88 ASN 88 391 391 ASN ASN A . n A 1 89 PRO 89 392 392 PRO PRO A . n A 1 90 PRO 90 393 393 PRO PRO A . n A 1 91 ASP 91 394 394 ASP ASP A . n A 1 92 HIS 92 395 395 HIS HIS A . n A 1 93 GLU 93 396 396 GLU GLU A . n A 1 94 VAL 94 397 397 VAL VAL A . n A 1 95 VAL 95 398 398 VAL VAL A . n A 1 96 ALA 96 399 399 ALA ALA A . n A 1 97 MET 97 400 400 MET MET A . n A 1 98 ALA 98 401 401 ALA ALA A . n A 1 99 ARG 99 402 402 ARG ARG A . n A 1 100 LYS 100 403 403 LYS LYS A . n A 1 101 LEU 101 404 404 LEU LEU A . n A 1 102 GLN 102 405 405 GLN GLN A . n A 1 103 ASP 103 406 406 ASP ASP A . n A 1 104 VAL 104 407 407 VAL VAL A . n A 1 105 PHE 105 408 408 PHE PHE A . n A 1 106 GLU 106 409 409 GLU GLU A . n A 1 107 MET 107 410 410 MET MET A . n A 1 108 ARG 108 411 411 ARG ARG A . n A 1 109 PHE 109 412 412 PHE PHE A . n A 1 110 ALA 110 413 413 ALA ALA A . n A 1 111 LYS 111 414 414 LYS LYS A . n A 1 112 MET 112 415 415 MET MET A . n A 1 113 PRO 113 416 416 PRO PRO A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQ1 1 1 1 JQ1 JQ1 A . C 3 EDO 1 417 417 EDO EDO A . D 4 HOH 1 2 2 HOH HOH A . D 4 HOH 2 3 3 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 10 10 HOH HOH A . D 4 HOH 10 11 11 HOH HOH A . D 4 HOH 11 12 12 HOH HOH A . D 4 HOH 12 13 13 HOH HOH A . D 4 HOH 13 14 14 HOH HOH A . D 4 HOH 14 15 15 HOH HOH A . D 4 HOH 15 16 16 HOH HOH A . D 4 HOH 16 17 17 HOH HOH A . D 4 HOH 17 18 18 HOH HOH A . D 4 HOH 18 19 19 HOH HOH A . D 4 HOH 19 20 20 HOH HOH A . D 4 HOH 20 21 21 HOH HOH A . D 4 HOH 21 22 22 HOH HOH A . D 4 HOH 22 23 23 HOH HOH A . D 4 HOH 23 24 24 HOH HOH A . D 4 HOH 24 25 25 HOH HOH A . D 4 HOH 25 26 26 HOH HOH A . D 4 HOH 26 27 27 HOH HOH A . D 4 HOH 27 28 28 HOH HOH A . D 4 HOH 28 29 29 HOH HOH A . D 4 HOH 29 30 30 HOH HOH A . D 4 HOH 30 31 31 HOH HOH A . D 4 HOH 31 32 32 HOH HOH A . D 4 HOH 32 33 33 HOH HOH A . D 4 HOH 33 34 34 HOH HOH A . D 4 HOH 34 35 35 HOH HOH A . D 4 HOH 35 36 36 HOH HOH A . D 4 HOH 36 37 37 HOH HOH A . D 4 HOH 37 38 38 HOH HOH A . D 4 HOH 38 39 39 HOH HOH A . D 4 HOH 39 40 40 HOH HOH A . D 4 HOH 40 41 41 HOH HOH A . D 4 HOH 41 42 42 HOH HOH A . D 4 HOH 42 43 43 HOH HOH A . D 4 HOH 43 44 44 HOH HOH A . D 4 HOH 44 45 45 HOH HOH A . D 4 HOH 45 46 46 HOH HOH A . D 4 HOH 46 47 47 HOH HOH A . D 4 HOH 47 48 48 HOH HOH A . D 4 HOH 48 49 49 HOH HOH A . D 4 HOH 49 50 50 HOH HOH A . D 4 HOH 50 51 51 HOH HOH A . D 4 HOH 51 52 52 HOH HOH A . D 4 HOH 52 53 53 HOH HOH A . D 4 HOH 53 54 54 HOH HOH A . D 4 HOH 54 55 55 HOH HOH A . D 4 HOH 55 56 56 HOH HOH A . D 4 HOH 56 57 57 HOH HOH A . D 4 HOH 57 58 58 HOH HOH A . D 4 HOH 58 59 59 HOH HOH A . D 4 HOH 59 60 60 HOH HOH A . D 4 HOH 60 61 61 HOH HOH A . D 4 HOH 61 62 62 HOH HOH A . D 4 HOH 62 63 63 HOH HOH A . D 4 HOH 63 64 64 HOH HOH A . D 4 HOH 64 65 65 HOH HOH A . D 4 HOH 65 66 66 HOH HOH A . D 4 HOH 66 67 67 HOH HOH A . D 4 HOH 67 68 68 HOH HOH A . D 4 HOH 68 69 69 HOH HOH A . D 4 HOH 69 70 70 HOH HOH A . D 4 HOH 70 71 71 HOH HOH A . D 4 HOH 71 72 72 HOH HOH A . D 4 HOH 72 73 73 HOH HOH A . D 4 HOH 73 74 74 HOH HOH A . D 4 HOH 74 75 75 HOH HOH A . D 4 HOH 75 76 76 HOH HOH A . D 4 HOH 76 77 77 HOH HOH A . D 4 HOH 77 78 78 HOH HOH A . D 4 HOH 78 79 79 HOH HOH A . D 4 HOH 79 80 80 HOH HOH A . D 4 HOH 80 81 81 HOH HOH A . D 4 HOH 81 82 82 HOH HOH A . D 4 HOH 82 83 83 HOH HOH A . D 4 HOH 83 84 84 HOH HOH A . D 4 HOH 84 85 85 HOH HOH A . D 4 HOH 85 86 86 HOH HOH A . D 4 HOH 86 87 87 HOH HOH A . D 4 HOH 87 88 88 HOH HOH A . D 4 HOH 88 89 89 HOH HOH A . D 4 HOH 89 90 90 HOH HOH A . D 4 HOH 90 91 91 HOH HOH A . D 4 HOH 91 92 92 HOH HOH A . D 4 HOH 92 93 93 HOH HOH A . D 4 HOH 93 94 94 HOH HOH A . D 4 HOH 94 95 95 HOH HOH A . D 4 HOH 95 96 96 HOH HOH A . D 4 HOH 96 97 97 HOH HOH A . D 4 HOH 97 98 98 HOH HOH A . D 4 HOH 98 99 99 HOH HOH A . D 4 HOH 99 100 100 HOH HOH A . D 4 HOH 100 101 101 HOH HOH A . D 4 HOH 101 102 102 HOH HOH A . D 4 HOH 102 103 103 HOH HOH A . D 4 HOH 103 104 104 HOH HOH A . D 4 HOH 104 105 105 HOH HOH A . D 4 HOH 105 106 106 HOH HOH A . D 4 HOH 106 107 107 HOH HOH A . D 4 HOH 107 108 108 HOH HOH A . D 4 HOH 108 109 109 HOH HOH A . D 4 HOH 109 110 110 HOH HOH A . D 4 HOH 110 111 111 HOH HOH A . D 4 HOH 111 112 112 HOH HOH A . D 4 HOH 112 113 113 HOH HOH A . D 4 HOH 113 114 114 HOH HOH A . D 4 HOH 114 115 115 HOH HOH A . D 4 HOH 115 116 116 HOH HOH A . D 4 HOH 116 117 117 HOH HOH A . D 4 HOH 117 118 118 HOH HOH A . D 4 HOH 118 119 119 HOH HOH A . D 4 HOH 119 120 120 HOH HOH A . D 4 HOH 120 121 121 HOH HOH A . D 4 HOH 121 122 122 HOH HOH A . D 4 HOH 122 123 123 HOH HOH A . D 4 HOH 123 124 124 HOH HOH A . D 4 HOH 124 125 125 HOH HOH A . D 4 HOH 125 126 126 HOH HOH A . D 4 HOH 126 127 127 HOH HOH A . D 4 HOH 127 128 128 HOH HOH A . D 4 HOH 128 129 129 HOH HOH A . D 4 HOH 129 130 130 HOH HOH A . D 4 HOH 130 131 131 HOH HOH A . D 4 HOH 131 132 132 HOH HOH A . D 4 HOH 132 133 133 HOH HOH A . D 4 HOH 133 134 134 HOH HOH A . D 4 HOH 134 135 135 HOH HOH A . D 4 HOH 135 136 136 HOH HOH A . D 4 HOH 136 137 137 HOH HOH A . D 4 HOH 137 138 138 HOH HOH A . D 4 HOH 138 139 139 HOH HOH A . D 4 HOH 139 140 140 HOH HOH A . D 4 HOH 140 141 141 HOH HOH A . D 4 HOH 141 142 142 HOH HOH A . D 4 HOH 142 143 143 HOH HOH A . D 4 HOH 143 144 144 HOH HOH A . D 4 HOH 144 145 145 HOH HOH A . D 4 HOH 145 146 146 HOH HOH A . D 4 HOH 146 147 147 HOH HOH A . D 4 HOH 147 148 148 HOH HOH A . D 4 HOH 148 149 149 HOH HOH A . D 4 HOH 149 150 150 HOH HOH A . D 4 HOH 150 151 151 HOH HOH A . D 4 HOH 151 152 152 HOH HOH A . D 4 HOH 152 153 153 HOH HOH A . D 4 HOH 153 154 154 HOH HOH A . D 4 HOH 154 155 155 HOH HOH A . D 4 HOH 155 156 156 HOH HOH A . D 4 HOH 156 157 157 HOH HOH A . D 4 HOH 157 158 158 HOH HOH A . D 4 HOH 158 159 159 HOH HOH A . D 4 HOH 159 160 160 HOH HOH A . D 4 HOH 160 161 161 HOH HOH A . D 4 HOH 161 162 162 HOH HOH A . D 4 HOH 162 163 163 HOH HOH A . D 4 HOH 163 164 164 HOH HOH A . D 4 HOH 164 165 165 HOH HOH A . D 4 HOH 165 166 166 HOH HOH A . D 4 HOH 166 167 167 HOH HOH A . D 4 HOH 167 168 168 HOH HOH A . D 4 HOH 168 169 169 HOH HOH A . D 4 HOH 169 170 170 HOH HOH A . D 4 HOH 170 171 171 HOH HOH A . D 4 HOH 171 172 172 HOH HOH A . D 4 HOH 172 173 173 HOH HOH A . D 4 HOH 173 174 174 HOH HOH A . D 4 HOH 174 175 175 HOH HOH A . D 4 HOH 175 176 176 HOH HOH A . D 4 HOH 176 177 177 HOH HOH A . D 4 HOH 177 178 178 HOH HOH A . D 4 HOH 178 179 179 HOH HOH A . D 4 HOH 179 180 180 HOH HOH A . D 4 HOH 180 181 181 HOH HOH A . D 4 HOH 181 182 182 HOH HOH A . D 4 HOH 182 183 183 HOH HOH A . D 4 HOH 183 184 184 HOH HOH A . D 4 HOH 184 185 185 HOH HOH A . D 4 HOH 185 186 186 HOH HOH A . D 4 HOH 186 187 187 HOH HOH A . D 4 HOH 187 188 188 HOH HOH A . D 4 HOH 188 189 189 HOH HOH A . D 4 HOH 189 190 190 HOH HOH A . D 4 HOH 190 191 191 HOH HOH A . D 4 HOH 191 192 192 HOH HOH A . D 4 HOH 192 193 193 HOH HOH A . D 4 HOH 193 418 418 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 22 ? D HOH . 2 1 A HOH 80 ? D HOH . 3 1 A HOH 173 ? D HOH . 4 1 A HOH 177 ? D HOH . 5 1 A HOH 180 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.360 _diffrn_reflns.pdbx_d_res_low 28.452 _diffrn_reflns.pdbx_number_obs 24181 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.068 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 8.40 _diffrn_reflns.pdbx_redundancy 4.40 _diffrn_reflns.pdbx_percent_possible_obs 99.90 _diffrn_reflns.number 106701 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.30 28.45 ? ? 0.021 0.021 ? 4.20 98.80 1 3.04 4.30 ? ? 0.025 0.025 ? 4.60 100.00 1 2.48 3.04 ? ? 0.063 0.063 ? 4.00 99.70 1 2.15 2.48 ? ? 0.065 0.065 ? 4.30 100.00 1 1.92 2.15 ? ? 0.068 0.068 ? 4.40 99.90 1 1.76 1.92 ? ? 0.114 0.114 ? 4.40 99.90 1 1.63 1.76 ? ? 0.193 0.193 ? 4.50 100.00 1 1.52 1.63 ? ? 0.298 0.298 ? 4.50 99.90 1 1.43 1.52 ? ? 0.465 0.465 ? 4.50 100.00 1 1.36 1.43 ? ? 0.730 0.730 ? 4.50 99.90 # _pdbx_phasing_MR.entry_id 3S92 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 50.940 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 28.450 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 28.450 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 DNA . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH A TYR 314 ? A O A HOH 141 ? ? 1.41 2 1 O A HOH 21 ? ? O A HOH 156 ? ? 2.04 3 1 O A HOH 54 ? ? O A HOH 182 ? ? 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 309 ? A -40.57 150.80 2 1 LEU A 345 ? ? -100.73 77.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 307 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 307 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 307 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 307 ? NZ ? A LYS 4 NZ 5 1 Y 1 A GLU 310 ? CG ? A GLU 7 CG 6 1 Y 1 A GLU 310 ? CD ? A GLU 7 CD 7 1 Y 1 A GLU 310 ? OE1 ? A GLU 7 OE1 8 1 Y 1 A GLU 310 ? OE2 ? A GLU 7 OE2 9 1 Y 1 A LYS 325 ? CE ? A LYS 22 CE 10 1 Y 1 A LYS 325 ? NZ ? A LYS 22 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 304 ? A SER 1 2 1 Y 1 A MET 305 ? A MET 2 3 1 Y 1 A GLY 306 ? A GLY 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 JQ1 CAA C N N 193 JQ1 CAB C N N 194 JQ1 CAC C N N 195 JQ1 CAD C N N 196 JQ1 CAE C N N 197 JQ1 CAF C N N 198 JQ1 OAG O N N 199 JQ1 CLAH CL N N 200 JQ1 CAI C Y N 201 JQ1 CAJ C Y N 202 JQ1 CAK C Y N 203 JQ1 CAL C Y N 204 JQ1 CAM C N N 205 JQ1 NAN N N N 206 JQ1 NAO N Y N 207 JQ1 NAP N Y N 208 JQ1 OAQ O N N 209 JQ1 SAR S Y N 210 JQ1 CAS C N N 211 JQ1 CAT C N N 212 JQ1 CAU C Y N 213 JQ1 CAV C Y N 214 JQ1 CAW C Y N 215 JQ1 CAX C Y N 216 JQ1 CAY C Y N 217 JQ1 CAZ C Y N 218 JQ1 CBA C Y N 219 JQ1 CBB C Y N 220 JQ1 CBC C N S 221 JQ1 NBD N Y N 222 JQ1 CBE C N N 223 JQ1 HAA H N N 224 JQ1 HAAA H N N 225 JQ1 HAAB H N N 226 JQ1 HAB H N N 227 JQ1 HABA H N N 228 JQ1 HABB H N N 229 JQ1 HAC H N N 230 JQ1 HACA H N N 231 JQ1 HACB H N N 232 JQ1 HAD H N N 233 JQ1 HADA H N N 234 JQ1 HADB H N N 235 JQ1 HAE H N N 236 JQ1 HAEA H N N 237 JQ1 HAEB H N N 238 JQ1 HAF H N N 239 JQ1 HAFA H N N 240 JQ1 HAFB H N N 241 JQ1 HAI H N N 242 JQ1 HAJ H N N 243 JQ1 HAK H N N 244 JQ1 HAL H N N 245 JQ1 HAM H N N 246 JQ1 HAMA H N N 247 JQ1 HNAP H N N 248 JQ1 HBC H N N 249 LEU N N N N 250 LEU CA C N S 251 LEU C C N N 252 LEU O O N N 253 LEU CB C N N 254 LEU CG C N N 255 LEU CD1 C N N 256 LEU CD2 C N N 257 LEU OXT O N N 258 LEU H H N N 259 LEU H2 H N N 260 LEU HA H N N 261 LEU HB2 H N N 262 LEU HB3 H N N 263 LEU HG H N N 264 LEU HD11 H N N 265 LEU HD12 H N N 266 LEU HD13 H N N 267 LEU HD21 H N N 268 LEU HD22 H N N 269 LEU HD23 H N N 270 LEU HXT H N N 271 LYS N N N N 272 LYS CA C N S 273 LYS C C N N 274 LYS O O N N 275 LYS CB C N N 276 LYS CG C N N 277 LYS CD C N N 278 LYS CE C N N 279 LYS NZ N N N 280 LYS OXT O N N 281 LYS H H N N 282 LYS H2 H N N 283 LYS HA H N N 284 LYS HB2 H N N 285 LYS HB3 H N N 286 LYS HG2 H N N 287 LYS HG3 H N N 288 LYS HD2 H N N 289 LYS HD3 H N N 290 LYS HE2 H N N 291 LYS HE3 H N N 292 LYS HZ1 H N N 293 LYS HZ2 H N N 294 LYS HZ3 H N N 295 LYS HXT H N N 296 MET N N N N 297 MET CA C N S 298 MET C C N N 299 MET O O N N 300 MET CB C N N 301 MET CG C N N 302 MET SD S N N 303 MET CE C N N 304 MET OXT O N N 305 MET H H N N 306 MET H2 H N N 307 MET HA H N N 308 MET HB2 H N N 309 MET HB3 H N N 310 MET HG2 H N N 311 MET HG3 H N N 312 MET HE1 H N N 313 MET HE2 H N N 314 MET HE3 H N N 315 MET HXT H N N 316 PHE N N N N 317 PHE CA C N S 318 PHE C C N N 319 PHE O O N N 320 PHE CB C N N 321 PHE CG C Y N 322 PHE CD1 C Y N 323 PHE CD2 C Y N 324 PHE CE1 C Y N 325 PHE CE2 C Y N 326 PHE CZ C Y N 327 PHE OXT O N N 328 PHE H H N N 329 PHE H2 H N N 330 PHE HA H N N 331 PHE HB2 H N N 332 PHE HB3 H N N 333 PHE HD1 H N N 334 PHE HD2 H N N 335 PHE HE1 H N N 336 PHE HE2 H N N 337 PHE HZ H N N 338 PHE HXT H N N 339 PRO N N N N 340 PRO CA C N S 341 PRO C C N N 342 PRO O O N N 343 PRO CB C N N 344 PRO CG C N N 345 PRO CD C N N 346 PRO OXT O N N 347 PRO H H N N 348 PRO HA H N N 349 PRO HB2 H N N 350 PRO HB3 H N N 351 PRO HG2 H N N 352 PRO HG3 H N N 353 PRO HD2 H N N 354 PRO HD3 H N N 355 PRO HXT H N N 356 SER N N N N 357 SER CA C N S 358 SER C C N N 359 SER O O N N 360 SER CB C N N 361 SER OG O N N 362 SER OXT O N N 363 SER H H N N 364 SER H2 H N N 365 SER HA H N N 366 SER HB2 H N N 367 SER HB3 H N N 368 SER HG H N N 369 SER HXT H N N 370 THR N N N N 371 THR CA C N S 372 THR C C N N 373 THR O O N N 374 THR CB C N R 375 THR OG1 O N N 376 THR CG2 C N N 377 THR OXT O N N 378 THR H H N N 379 THR H2 H N N 380 THR HA H N N 381 THR HB H N N 382 THR HG1 H N N 383 THR HG21 H N N 384 THR HG22 H N N 385 THR HG23 H N N 386 THR HXT H N N 387 TRP N N N N 388 TRP CA C N S 389 TRP C C N N 390 TRP O O N N 391 TRP CB C N N 392 TRP CG C Y N 393 TRP CD1 C Y N 394 TRP CD2 C Y N 395 TRP NE1 N Y N 396 TRP CE2 C Y N 397 TRP CE3 C Y N 398 TRP CZ2 C Y N 399 TRP CZ3 C Y N 400 TRP CH2 C Y N 401 TRP OXT O N N 402 TRP H H N N 403 TRP H2 H N N 404 TRP HA H N N 405 TRP HB2 H N N 406 TRP HB3 H N N 407 TRP HD1 H N N 408 TRP HE1 H N N 409 TRP HE3 H N N 410 TRP HZ2 H N N 411 TRP HZ3 H N N 412 TRP HH2 H N N 413 TRP HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 VAL N N N N 439 VAL CA C N S 440 VAL C C N N 441 VAL O O N N 442 VAL CB C N N 443 VAL CG1 C N N 444 VAL CG2 C N N 445 VAL OXT O N N 446 VAL H H N N 447 VAL H2 H N N 448 VAL HA H N N 449 VAL HB H N N 450 VAL HG11 H N N 451 VAL HG12 H N N 452 VAL HG13 H N N 453 VAL HG21 H N N 454 VAL HG22 H N N 455 VAL HG23 H N N 456 VAL HXT H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 JQ1 CAA CAV sing N N 182 JQ1 CAB CAX sing N N 183 JQ1 CAC CAY sing N N 184 JQ1 CAD CBE sing N N 185 JQ1 CAE CBE sing N N 186 JQ1 CAF CBE sing N N 187 JQ1 OAG CAS doub N N 188 JQ1 CLAH CAU sing N N 189 JQ1 CAI CAK doub Y N 190 JQ1 CAI CAU sing Y N 191 JQ1 CAJ CAL sing Y N 192 JQ1 CAJ CAU doub Y N 193 JQ1 CAK CAW sing Y N 194 JQ1 CAL CAW doub Y N 195 JQ1 CAM CAS sing N N 196 JQ1 CAM CBC sing N N 197 JQ1 NAN CAT doub N N 198 JQ1 NAN CBC sing N N 199 JQ1 NAO NAP sing Y N 200 JQ1 NAO CAV doub Y N 201 JQ1 NAP CAZ sing Y N 202 JQ1 OAQ CAS sing N N 203 JQ1 OAQ CBE sing N N 204 JQ1 SAR CAX sing Y N 205 JQ1 SAR CBB sing Y N 206 JQ1 CAT CAW sing N N 207 JQ1 CAT CBA sing N N 208 JQ1 CAV NBD sing Y N 209 JQ1 CAX CAY doub Y N 210 JQ1 CAY CBA sing Y N 211 JQ1 CAZ CBC sing N N 212 JQ1 CAZ NBD doub Y N 213 JQ1 CBA CBB doub Y N 214 JQ1 CBB NBD sing Y N 215 JQ1 CAA HAA sing N N 216 JQ1 CAA HAAA sing N N 217 JQ1 CAA HAAB sing N N 218 JQ1 CAB HAB sing N N 219 JQ1 CAB HABA sing N N 220 JQ1 CAB HABB sing N N 221 JQ1 CAC HAC sing N N 222 JQ1 CAC HACA sing N N 223 JQ1 CAC HACB sing N N 224 JQ1 CAD HAD sing N N 225 JQ1 CAD HADA sing N N 226 JQ1 CAD HADB sing N N 227 JQ1 CAE HAE sing N N 228 JQ1 CAE HAEA sing N N 229 JQ1 CAE HAEB sing N N 230 JQ1 CAF HAF sing N N 231 JQ1 CAF HAFA sing N N 232 JQ1 CAF HAFB sing N N 233 JQ1 CAI HAI sing N N 234 JQ1 CAJ HAJ sing N N 235 JQ1 CAK HAK sing N N 236 JQ1 CAL HAL sing N N 237 JQ1 CAM HAM sing N N 238 JQ1 CAM HAMA sing N N 239 JQ1 NAP HNAP sing N N 240 JQ1 CBC HBC sing N N 241 LEU N CA sing N N 242 LEU N H sing N N 243 LEU N H2 sing N N 244 LEU CA C sing N N 245 LEU CA CB sing N N 246 LEU CA HA sing N N 247 LEU C O doub N N 248 LEU C OXT sing N N 249 LEU CB CG sing N N 250 LEU CB HB2 sing N N 251 LEU CB HB3 sing N N 252 LEU CG CD1 sing N N 253 LEU CG CD2 sing N N 254 LEU CG HG sing N N 255 LEU CD1 HD11 sing N N 256 LEU CD1 HD12 sing N N 257 LEU CD1 HD13 sing N N 258 LEU CD2 HD21 sing N N 259 LEU CD2 HD22 sing N N 260 LEU CD2 HD23 sing N N 261 LEU OXT HXT sing N N 262 LYS N CA sing N N 263 LYS N H sing N N 264 LYS N H2 sing N N 265 LYS CA C sing N N 266 LYS CA CB sing N N 267 LYS CA HA sing N N 268 LYS C O doub N N 269 LYS C OXT sing N N 270 LYS CB CG sing N N 271 LYS CB HB2 sing N N 272 LYS CB HB3 sing N N 273 LYS CG CD sing N N 274 LYS CG HG2 sing N N 275 LYS CG HG3 sing N N 276 LYS CD CE sing N N 277 LYS CD HD2 sing N N 278 LYS CD HD3 sing N N 279 LYS CE NZ sing N N 280 LYS CE HE2 sing N N 281 LYS CE HE3 sing N N 282 LYS NZ HZ1 sing N N 283 LYS NZ HZ2 sing N N 284 LYS NZ HZ3 sing N N 285 LYS OXT HXT sing N N 286 MET N CA sing N N 287 MET N H sing N N 288 MET N H2 sing N N 289 MET CA C sing N N 290 MET CA CB sing N N 291 MET CA HA sing N N 292 MET C O doub N N 293 MET C OXT sing N N 294 MET CB CG sing N N 295 MET CB HB2 sing N N 296 MET CB HB3 sing N N 297 MET CG SD sing N N 298 MET CG HG2 sing N N 299 MET CG HG3 sing N N 300 MET SD CE sing N N 301 MET CE HE1 sing N N 302 MET CE HE2 sing N N 303 MET CE HE3 sing N N 304 MET OXT HXT sing N N 305 PHE N CA sing N N 306 PHE N H sing N N 307 PHE N H2 sing N N 308 PHE CA C sing N N 309 PHE CA CB sing N N 310 PHE CA HA sing N N 311 PHE C O doub N N 312 PHE C OXT sing N N 313 PHE CB CG sing N N 314 PHE CB HB2 sing N N 315 PHE CB HB3 sing N N 316 PHE CG CD1 doub Y N 317 PHE CG CD2 sing Y N 318 PHE CD1 CE1 sing Y N 319 PHE CD1 HD1 sing N N 320 PHE CD2 CE2 doub Y N 321 PHE CD2 HD2 sing N N 322 PHE CE1 CZ doub Y N 323 PHE CE1 HE1 sing N N 324 PHE CE2 CZ sing Y N 325 PHE CE2 HE2 sing N N 326 PHE CZ HZ sing N N 327 PHE OXT HXT sing N N 328 PRO N CA sing N N 329 PRO N CD sing N N 330 PRO N H sing N N 331 PRO CA C sing N N 332 PRO CA CB sing N N 333 PRO CA HA sing N N 334 PRO C O doub N N 335 PRO C OXT sing N N 336 PRO CB CG sing N N 337 PRO CB HB2 sing N N 338 PRO CB HB3 sing N N 339 PRO CG CD sing N N 340 PRO CG HG2 sing N N 341 PRO CG HG3 sing N N 342 PRO CD HD2 sing N N 343 PRO CD HD3 sing N N 344 PRO OXT HXT sing N N 345 SER N CA sing N N 346 SER N H sing N N 347 SER N H2 sing N N 348 SER CA C sing N N 349 SER CA CB sing N N 350 SER CA HA sing N N 351 SER C O doub N N 352 SER C OXT sing N N 353 SER CB OG sing N N 354 SER CB HB2 sing N N 355 SER CB HB3 sing N N 356 SER OG HG sing N N 357 SER OXT HXT sing N N 358 THR N CA sing N N 359 THR N H sing N N 360 THR N H2 sing N N 361 THR CA C sing N N 362 THR CA CB sing N N 363 THR CA HA sing N N 364 THR C O doub N N 365 THR C OXT sing N N 366 THR CB OG1 sing N N 367 THR CB CG2 sing N N 368 THR CB HB sing N N 369 THR OG1 HG1 sing N N 370 THR CG2 HG21 sing N N 371 THR CG2 HG22 sing N N 372 THR CG2 HG23 sing N N 373 THR OXT HXT sing N N 374 TRP N CA sing N N 375 TRP N H sing N N 376 TRP N H2 sing N N 377 TRP CA C sing N N 378 TRP CA CB sing N N 379 TRP CA HA sing N N 380 TRP C O doub N N 381 TRP C OXT sing N N 382 TRP CB CG sing N N 383 TRP CB HB2 sing N N 384 TRP CB HB3 sing N N 385 TRP CG CD1 doub Y N 386 TRP CG CD2 sing Y N 387 TRP CD1 NE1 sing Y N 388 TRP CD1 HD1 sing N N 389 TRP CD2 CE2 doub Y N 390 TRP CD2 CE3 sing Y N 391 TRP NE1 CE2 sing Y N 392 TRP NE1 HE1 sing N N 393 TRP CE2 CZ2 sing Y N 394 TRP CE3 CZ3 doub Y N 395 TRP CE3 HE3 sing N N 396 TRP CZ2 CH2 doub Y N 397 TRP CZ2 HZ2 sing N N 398 TRP CZ3 CH2 sing Y N 399 TRP CZ3 HZ3 sing N N 400 TRP CH2 HH2 sing N N 401 TRP OXT HXT sing N N 402 TYR N CA sing N N 403 TYR N H sing N N 404 TYR N H2 sing N N 405 TYR CA C sing N N 406 TYR CA CB sing N N 407 TYR CA HA sing N N 408 TYR C O doub N N 409 TYR C OXT sing N N 410 TYR CB CG sing N N 411 TYR CB HB2 sing N N 412 TYR CB HB3 sing N N 413 TYR CG CD1 doub Y N 414 TYR CG CD2 sing Y N 415 TYR CD1 CE1 sing Y N 416 TYR CD1 HD1 sing N N 417 TYR CD2 CE2 doub Y N 418 TYR CD2 HD2 sing N N 419 TYR CE1 CZ doub Y N 420 TYR CE1 HE1 sing N N 421 TYR CE2 CZ sing Y N 422 TYR CE2 HE2 sing N N 423 TYR CZ OH sing N N 424 TYR OH HH sing N N 425 TYR OXT HXT sing N N 426 VAL N CA sing N N 427 VAL N H sing N N 428 VAL N H2 sing N N 429 VAL CA C sing N N 430 VAL CA CB sing N N 431 VAL CA HA sing N N 432 VAL C O doub N N 433 VAL C OXT sing N N 434 VAL CB CG1 sing N N 435 VAL CB CG2 sing N N 436 VAL CB HB sing N N 437 VAL CG1 HG11 sing N N 438 VAL CG1 HG12 sing N N 439 VAL CG1 HG13 sing N N 440 VAL CG2 HG21 sing N N 441 VAL CG2 HG22 sing N N 442 VAL CG2 HG23 sing N N 443 VAL OXT HXT sing N N 444 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(6S)-6-(2-tert-butoxy-2-oxoethyl)-4-(4-chlorophenyl)-2,3,9-trimethyl-6,7-dihydrothieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-10-ium ; JQ1 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2OO1 _pdbx_initial_refinement_model.details 'PDB entry 2OO1' #