data_3SBL # _entry.id 3SBL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SBL pdb_00003sbl 10.2210/pdb3sbl/pdb RCSB RCSB066004 ? ? WWPDB D_1000066004 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3RKJ 'the different construct of the same protein d-38 (38 N-terminal residues were deleted)' unspecified PDB 3RKK 'The same construct of the same protein but different crystal form' unspecified TargetDB APC105101 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SBL _pdbx_database_status.recvd_initial_deposition_date 2011-06-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Tesar, C.' 2 'Jedrzejczak, R.' 3 'Babnigg, J.' 4 'Binkowski, T.A.' 5 'Mire, J.' 6 'Sacchettini, J.' 7 'Joachimiak, A.' 8 'Midwest Center for Structural Genomics (MCSG)' 9 'Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)' 10 # _citation.id primary _citation.title 'Structure of Apo- and Monometalated Forms of NDM-1 A Highly Potent Carbapenem-Hydrolyzing Metallo-beta-Lactamase' _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e24621 _citation.page_last e24621 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21931780 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0024621 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, Y.' 1 ? primary 'Tesar, C.' 2 ? primary 'Mire, J.' 3 ? primary 'Jedrzejczak, R.' 4 ? primary 'Binkowski, A.' 5 ? primary 'Babnigg, G.' 6 ? primary 'Sacchettini, J.' 7 ? primary 'Joachimiak, A.' 8 ? # _cell.entry_id 3SBL _cell.length_a 66.050 _cell.length_b 83.269 _cell.length_c 105.401 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SBL _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-lactamase NDM-1' 25100.152 1 3.5.2.6 ? 'sequence database residues 39-270' ? 2 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 3 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDM-1, Metallo-beta-lactamase NDM-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPV ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDN ITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPV ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDN ITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC105101 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ASN n 1 5 TYR n 1 6 MET n 1 7 GLU n 1 8 THR n 1 9 GLY n 1 10 ASP n 1 11 GLN n 1 12 ARG n 1 13 PHE n 1 14 GLY n 1 15 ASP n 1 16 LEU n 1 17 VAL n 1 18 PHE n 1 19 ARG n 1 20 GLN n 1 21 LEU n 1 22 ALA n 1 23 PRO n 1 24 ASN n 1 25 VAL n 1 26 TRP n 1 27 GLN n 1 28 HIS n 1 29 THR n 1 30 SER n 1 31 TYR n 1 32 LEU n 1 33 ASP n 1 34 MET n 1 35 PRO n 1 36 GLY n 1 37 PHE n 1 38 GLY n 1 39 ALA n 1 40 VAL n 1 41 ALA n 1 42 SER n 1 43 ASN n 1 44 GLY n 1 45 LEU n 1 46 ILE n 1 47 VAL n 1 48 ARG n 1 49 ASP n 1 50 GLY n 1 51 GLY n 1 52 ARG n 1 53 VAL n 1 54 LEU n 1 55 VAL n 1 56 VAL n 1 57 ASP n 1 58 THR n 1 59 ALA n 1 60 TRP n 1 61 THR n 1 62 ASP n 1 63 ASP n 1 64 GLN n 1 65 THR n 1 66 ALA n 1 67 GLN n 1 68 ILE n 1 69 LEU n 1 70 ASN n 1 71 TRP n 1 72 ILE n 1 73 LYS n 1 74 GLN n 1 75 GLU n 1 76 ILE n 1 77 ASN n 1 78 LEU n 1 79 PRO n 1 80 VAL n 1 81 ALA n 1 82 LEU n 1 83 ALA n 1 84 VAL n 1 85 VAL n 1 86 THR n 1 87 HIS n 1 88 ALA n 1 89 HIS n 1 90 GLN n 1 91 ASP n 1 92 LYS n 1 93 MET n 1 94 GLY n 1 95 GLY n 1 96 MET n 1 97 ASP n 1 98 ALA n 1 99 LEU n 1 100 HIS n 1 101 ALA n 1 102 ALA n 1 103 GLY n 1 104 ILE n 1 105 ALA n 1 106 THR n 1 107 TYR n 1 108 ALA n 1 109 ASN n 1 110 ALA n 1 111 LEU n 1 112 SER n 1 113 ASN n 1 114 GLN n 1 115 LEU n 1 116 ALA n 1 117 PRO n 1 118 GLN n 1 119 GLU n 1 120 GLY n 1 121 MET n 1 122 VAL n 1 123 ALA n 1 124 ALA n 1 125 GLN n 1 126 HIS n 1 127 SER n 1 128 LEU n 1 129 THR n 1 130 PHE n 1 131 ALA n 1 132 ALA n 1 133 ASN n 1 134 GLY n 1 135 TRP n 1 136 VAL n 1 137 GLU n 1 138 PRO n 1 139 ALA n 1 140 THR n 1 141 ALA n 1 142 PRO n 1 143 ASN n 1 144 PHE n 1 145 GLY n 1 146 PRO n 1 147 LEU n 1 148 LYS n 1 149 VAL n 1 150 PHE n 1 151 TYR n 1 152 PRO n 1 153 GLY n 1 154 PRO n 1 155 GLY n 1 156 HIS n 1 157 THR n 1 158 SER n 1 159 ASP n 1 160 ASN n 1 161 ILE n 1 162 THR n 1 163 VAL n 1 164 GLY n 1 165 ILE n 1 166 ASP n 1 167 GLY n 1 168 THR n 1 169 ASP n 1 170 ILE n 1 171 ALA n 1 172 PHE n 1 173 GLY n 1 174 GLY n 1 175 CYS n 1 176 LEU n 1 177 ILE n 1 178 LYS n 1 179 ASP n 1 180 SER n 1 181 LYS n 1 182 ALA n 1 183 LYS n 1 184 SER n 1 185 LEU n 1 186 GLY n 1 187 ASN n 1 188 LEU n 1 189 GLY n 1 190 ASP n 1 191 ALA n 1 192 ASP n 1 193 THR n 1 194 GLU n 1 195 HIS n 1 196 TYR n 1 197 ALA n 1 198 ALA n 1 199 SER n 1 200 ALA n 1 201 ARG n 1 202 ALA n 1 203 PHE n 1 204 GLY n 1 205 ALA n 1 206 ALA n 1 207 PHE n 1 208 PRO n 1 209 LYS n 1 210 ALA n 1 211 SER n 1 212 MET n 1 213 ILE n 1 214 VAL n 1 215 MET n 1 216 SER n 1 217 HIS n 1 218 SER n 1 219 ALA n 1 220 PRO n 1 221 ASP n 1 222 SER n 1 223 ARG n 1 224 ALA n 1 225 ALA n 1 226 ILE n 1 227 THR n 1 228 HIS n 1 229 THR n 1 230 ALA n 1 231 ARG n 1 232 MET n 1 233 ALA n 1 234 ASP n 1 235 LYS n 1 236 LEU n 1 237 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene blaNDM-1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Klebsiella pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 573 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BM21 magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLAN1_KLEPN _struct_ref.pdbx_db_accession C7C422 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;METGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVV THAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGI DGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SBL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 237 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C7C422 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 270 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 39 _struct_ref_seq.pdbx_auth_seq_align_end 270 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SBL SER A 1 ? UNP C7C422 ? ? 'expression tag' 34 1 1 3SBL ASN A 2 ? UNP C7C422 ? ? 'expression tag' 35 2 1 3SBL ALA A 3 ? UNP C7C422 ? ? 'expression tag' 36 3 1 3SBL ASN A 4 ? UNP C7C422 ? ? 'expression tag' 37 4 1 3SBL TYR A 5 ? UNP C7C422 ? ? 'expression tag' 38 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3SBL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;1.8 M Ammonium citrate dibasic, 0.1 M Sodium acetate trihydrate pH 4.6, 10 mM aztreonam, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-04-22 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97918 # _reflns.entry_id 3SBL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.3 _reflns.number_obs 12326 _reflns.number_all 12326 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.091 _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate 36.45 _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 84.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.334 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 528 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SBL _refine.ls_number_reflns_obs 12300 _refine.ls_number_reflns_all 12300 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.923 _refine.ls_d_res_high 2.310 _refine.ls_percent_reflns_obs 93.93 _refine.ls_R_factor_obs 0.203 _refine.ls_R_factor_all 0.203 _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free 0.260 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.85 _refine.ls_number_reflns_R_free 596 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.6 _refine.aniso_B[1][1] -18.9206 _refine.aniso_B[2][2] 2.3617 _refine.aniso_B[3][3] 16.5589 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.322 _refine.solvent_model_param_bsol 34.585 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.06 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB 3RKK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model mixed _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.68 _refine.pdbx_overall_phase_error 32.21 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1726 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 1800 _refine_hist.d_res_high 2.310 _refine_hist.d_res_low 36.923 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.012 ? ? 1800 ? 'X-RAY DIFFRACTION' f_angle_d 1.520 ? ? 2456 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.639 ? ? 625 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.104 ? ? 270 ? 'X-RAY DIFFRACTION' f_plane_restr 0.009 ? ? 327 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3102 2.5426 2499 0.3026 81.00 0.4231 . . 114 . . 2613 . 'X-RAY DIFFRACTION' . 2.5426 2.9104 2983 0.2546 97.00 0.2527 . . 157 . . 3140 . 'X-RAY DIFFRACTION' . 2.9104 3.6663 3065 0.1945 99.00 0.3117 . . 153 . . 3218 . 'X-RAY DIFFRACTION' . 3.6663 36.9280 3157 0.1663 98.00 0.2086 . . 172 . . 3329 . 'X-RAY DIFFRACTION' # _struct.entry_id 3SBL _struct.title 'Crystal Structure of New Delhi Metal-beta-lactamase-1 from Klebsiella pneumoniae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SBL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, alpha-beta structure, hydrolase, Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors, MTBI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 61 ? ILE A 76 ? THR A 94 ILE A 109 1 ? 16 HELX_P HELX_P2 2 HIS A 89 ? GLY A 94 ? HIS A 122 GLY A 127 1 ? 6 HELX_P HELX_P3 3 GLY A 95 ? ALA A 102 ? GLY A 128 ALA A 135 1 ? 8 HELX_P HELX_P4 4 ALA A 110 ? ALA A 116 ? ALA A 143 ALA A 149 1 ? 7 HELX_P HELX_P5 5 GLU A 137 ? ALA A 141 ? GLU A 170 ALA A 174 5 ? 5 HELX_P HELX_P6 6 HIS A 195 ? PHE A 207 ? HIS A 228 PHE A 240 1 ? 13 HELX_P HELX_P7 7 ARG A 223 ? LYS A 235 ? ARG A 256 LYS A 268 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 11 ? PHE A 13 ? GLN A 44 PHE A 46 A 2 LEU A 16 ? ALA A 22 ? LEU A 49 ALA A 55 A 3 VAL A 25 ? MET A 34 ? VAL A 58 MET A 67 A 4 GLY A 38 ? ASP A 49 ? GLY A 71 ASP A 82 A 5 ARG A 52 ? VAL A 56 ? ARG A 85 VAL A 89 A 6 VAL A 80 ? VAL A 85 ? VAL A 113 VAL A 118 A 7 ALA A 105 ? ASN A 109 ? ALA A 138 ASN A 142 A 8 HIS A 126 ? LEU A 128 ? HIS A 159 LEU A 161 B 1 LEU A 147 ? PHE A 150 ? LEU A 180 PHE A 183 B 2 THR A 162 ? ILE A 165 ? THR A 195 ILE A 198 B 3 ILE A 170 ? GLY A 174 ? ILE A 203 GLY A 207 B 4 MET A 212 ? MET A 215 ? MET A 245 MET A 248 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 11 ? N GLN A 44 O PHE A 18 ? O PHE A 51 A 2 3 N ARG A 19 ? N ARG A 52 O GLN A 27 ? O GLN A 60 A 3 4 N TRP A 26 ? N TRP A 59 O ILE A 46 ? O ILE A 79 A 4 5 N LEU A 45 ? N LEU A 78 O VAL A 56 ? O VAL A 89 A 5 6 N VAL A 55 ? N VAL A 88 O VAL A 84 ? O VAL A 117 A 6 7 N ALA A 83 ? N ALA A 116 O TYR A 107 ? O TYR A 140 A 7 8 N ALA A 108 ? N ALA A 141 O LEU A 128 ? O LEU A 161 B 1 2 N LYS A 148 ? N LYS A 181 O GLY A 164 ? O GLY A 197 B 2 3 N VAL A 163 ? N VAL A 196 O PHE A 172 ? O PHE A 205 B 3 4 N ALA A 171 ? N ALA A 204 O VAL A 214 ? O VAL A 247 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CIT _struct_site.pdbx_auth_seq_id 281 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE CIT A 281' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 ASP A 10 ? ASP A 43 . ? 1_555 ? 2 AC1 11 VAL A 17 ? VAL A 50 . ? 1_555 ? 3 AC1 11 ARG A 19 ? ARG A 52 . ? 1_555 ? 4 AC1 11 GLN A 27 ? GLN A 60 . ? 1_555 ? 5 AC1 11 THR A 29 ? THR A 62 . ? 1_555 ? 6 AC1 11 ASN A 43 ? ASN A 76 . ? 1_555 ? 7 AC1 11 SER A 218 ? SER A 251 . ? 1_555 ? 8 AC1 11 ALA A 219 ? ALA A 252 . ? 3_554 ? 9 AC1 11 ALA A 219 ? ALA A 252 . ? 1_555 ? 10 AC1 11 PRO A 220 ? PRO A 253 . ? 1_555 ? 11 AC1 11 HOH C . ? HOH A 299 . ? 3_554 ? # _database_PDB_matrix.entry_id 3SBL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SBL _atom_sites.fract_transf_matrix[1][1] 0.015140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009488 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 34 ? ? ? A . n A 1 2 ASN 2 35 ? ? ? A . n A 1 3 ALA 3 36 ? ? ? A . n A 1 4 ASN 4 37 ? ? ? A . n A 1 5 TYR 5 38 38 TYR TYR A . n A 1 6 MET 6 39 39 MET MET A . n A 1 7 GLU 7 40 40 GLU GLU A . n A 1 8 THR 8 41 41 THR THR A . n A 1 9 GLY 9 42 42 GLY GLY A . n A 1 10 ASP 10 43 43 ASP ASP A . n A 1 11 GLN 11 44 44 GLN GLN A . n A 1 12 ARG 12 45 45 ARG ARG A . n A 1 13 PHE 13 46 46 PHE PHE A . n A 1 14 GLY 14 47 47 GLY GLY A . n A 1 15 ASP 15 48 48 ASP ASP A . n A 1 16 LEU 16 49 49 LEU LEU A . n A 1 17 VAL 17 50 50 VAL VAL A . n A 1 18 PHE 18 51 51 PHE PHE A . n A 1 19 ARG 19 52 52 ARG ARG A . n A 1 20 GLN 20 53 53 GLN GLN A . n A 1 21 LEU 21 54 54 LEU LEU A . n A 1 22 ALA 22 55 55 ALA ALA A . n A 1 23 PRO 23 56 56 PRO PRO A . n A 1 24 ASN 24 57 57 ASN ASN A . n A 1 25 VAL 25 58 58 VAL VAL A . n A 1 26 TRP 26 59 59 TRP TRP A . n A 1 27 GLN 27 60 60 GLN GLN A . n A 1 28 HIS 28 61 61 HIS HIS A . n A 1 29 THR 29 62 62 THR THR A . n A 1 30 SER 30 63 63 SER SER A . n A 1 31 TYR 31 64 64 TYR TYR A . n A 1 32 LEU 32 65 65 LEU LEU A . n A 1 33 ASP 33 66 66 ASP ASP A . n A 1 34 MET 34 67 67 MET MET A . n A 1 35 PRO 35 68 68 PRO PRO A . n A 1 36 GLY 36 69 69 GLY GLY A . n A 1 37 PHE 37 70 70 PHE PHE A . n A 1 38 GLY 38 71 71 GLY GLY A . n A 1 39 ALA 39 72 72 ALA ALA A . n A 1 40 VAL 40 73 73 VAL VAL A . n A 1 41 ALA 41 74 74 ALA ALA A . n A 1 42 SER 42 75 75 SER SER A . n A 1 43 ASN 43 76 76 ASN ASN A . n A 1 44 GLY 44 77 77 GLY GLY A . n A 1 45 LEU 45 78 78 LEU LEU A . n A 1 46 ILE 46 79 79 ILE ILE A . n A 1 47 VAL 47 80 80 VAL VAL A . n A 1 48 ARG 48 81 81 ARG ARG A . n A 1 49 ASP 49 82 82 ASP ASP A . n A 1 50 GLY 50 83 83 GLY GLY A . n A 1 51 GLY 51 84 84 GLY GLY A . n A 1 52 ARG 52 85 85 ARG ARG A . n A 1 53 VAL 53 86 86 VAL VAL A . n A 1 54 LEU 54 87 87 LEU LEU A . n A 1 55 VAL 55 88 88 VAL VAL A . n A 1 56 VAL 56 89 89 VAL VAL A . n A 1 57 ASP 57 90 90 ASP ASP A . n A 1 58 THR 58 91 91 THR THR A . n A 1 59 ALA 59 92 92 ALA ALA A . n A 1 60 TRP 60 93 93 TRP TRP A . n A 1 61 THR 61 94 94 THR THR A . n A 1 62 ASP 62 95 95 ASP ASP A . n A 1 63 ASP 63 96 96 ASP ASP A . n A 1 64 GLN 64 97 97 GLN GLN A . n A 1 65 THR 65 98 98 THR THR A . n A 1 66 ALA 66 99 99 ALA ALA A . n A 1 67 GLN 67 100 100 GLN GLN A . n A 1 68 ILE 68 101 101 ILE ILE A . n A 1 69 LEU 69 102 102 LEU LEU A . n A 1 70 ASN 70 103 103 ASN ASN A . n A 1 71 TRP 71 104 104 TRP TRP A . n A 1 72 ILE 72 105 105 ILE ILE A . n A 1 73 LYS 73 106 106 LYS LYS A . n A 1 74 GLN 74 107 107 GLN GLN A . n A 1 75 GLU 75 108 108 GLU GLU A . n A 1 76 ILE 76 109 109 ILE ILE A . n A 1 77 ASN 77 110 110 ASN ASN A . n A 1 78 LEU 78 111 111 LEU LEU A . n A 1 79 PRO 79 112 112 PRO PRO A . n A 1 80 VAL 80 113 113 VAL VAL A . n A 1 81 ALA 81 114 114 ALA ALA A . n A 1 82 LEU 82 115 115 LEU LEU A . n A 1 83 ALA 83 116 116 ALA ALA A . n A 1 84 VAL 84 117 117 VAL VAL A . n A 1 85 VAL 85 118 118 VAL VAL A . n A 1 86 THR 86 119 119 THR THR A . n A 1 87 HIS 87 120 120 HIS HIS A . n A 1 88 ALA 88 121 121 ALA ALA A . n A 1 89 HIS 89 122 122 HIS HIS A . n A 1 90 GLN 90 123 123 GLN GLN A . n A 1 91 ASP 91 124 124 ASP ASP A . n A 1 92 LYS 92 125 125 LYS LYS A . n A 1 93 MET 93 126 126 MET MET A . n A 1 94 GLY 94 127 127 GLY GLY A . n A 1 95 GLY 95 128 128 GLY GLY A . n A 1 96 MET 96 129 129 MET MET A . n A 1 97 ASP 97 130 130 ASP ASP A . n A 1 98 ALA 98 131 131 ALA ALA A . n A 1 99 LEU 99 132 132 LEU LEU A . n A 1 100 HIS 100 133 133 HIS HIS A . n A 1 101 ALA 101 134 134 ALA ALA A . n A 1 102 ALA 102 135 135 ALA ALA A . n A 1 103 GLY 103 136 136 GLY GLY A . n A 1 104 ILE 104 137 137 ILE ILE A . n A 1 105 ALA 105 138 138 ALA ALA A . n A 1 106 THR 106 139 139 THR THR A . n A 1 107 TYR 107 140 140 TYR TYR A . n A 1 108 ALA 108 141 141 ALA ALA A . n A 1 109 ASN 109 142 142 ASN ASN A . n A 1 110 ALA 110 143 143 ALA ALA A . n A 1 111 LEU 111 144 144 LEU LEU A . n A 1 112 SER 112 145 145 SER SER A . n A 1 113 ASN 113 146 146 ASN ASN A . n A 1 114 GLN 114 147 147 GLN GLN A . n A 1 115 LEU 115 148 148 LEU LEU A . n A 1 116 ALA 116 149 149 ALA ALA A . n A 1 117 PRO 117 150 150 PRO PRO A . n A 1 118 GLN 118 151 151 GLN GLN A . n A 1 119 GLU 119 152 152 GLU GLU A . n A 1 120 GLY 120 153 153 GLY GLY A . n A 1 121 MET 121 154 154 MET MET A . n A 1 122 VAL 122 155 155 VAL VAL A . n A 1 123 ALA 123 156 156 ALA ALA A . n A 1 124 ALA 124 157 157 ALA ALA A . n A 1 125 GLN 125 158 158 GLN GLN A . n A 1 126 HIS 126 159 159 HIS HIS A . n A 1 127 SER 127 160 160 SER SER A . n A 1 128 LEU 128 161 161 LEU LEU A . n A 1 129 THR 129 162 162 THR THR A . n A 1 130 PHE 130 163 163 PHE PHE A . n A 1 131 ALA 131 164 164 ALA ALA A . n A 1 132 ALA 132 165 165 ALA ALA A . n A 1 133 ASN 133 166 166 ASN ASN A . n A 1 134 GLY 134 167 167 GLY GLY A . n A 1 135 TRP 135 168 168 TRP TRP A . n A 1 136 VAL 136 169 169 VAL VAL A . n A 1 137 GLU 137 170 170 GLU GLU A . n A 1 138 PRO 138 171 171 PRO PRO A . n A 1 139 ALA 139 172 172 ALA ALA A . n A 1 140 THR 140 173 173 THR THR A . n A 1 141 ALA 141 174 174 ALA ALA A . n A 1 142 PRO 142 175 175 PRO PRO A . n A 1 143 ASN 143 176 176 ASN ASN A . n A 1 144 PHE 144 177 177 PHE PHE A . n A 1 145 GLY 145 178 178 GLY GLY A . n A 1 146 PRO 146 179 179 PRO PRO A . n A 1 147 LEU 147 180 180 LEU LEU A . n A 1 148 LYS 148 181 181 LYS LYS A . n A 1 149 VAL 149 182 182 VAL VAL A . n A 1 150 PHE 150 183 183 PHE PHE A . n A 1 151 TYR 151 184 184 TYR TYR A . n A 1 152 PRO 152 185 185 PRO PRO A . n A 1 153 GLY 153 186 186 GLY GLY A . n A 1 154 PRO 154 187 187 PRO PRO A . n A 1 155 GLY 155 188 188 GLY GLY A . n A 1 156 HIS 156 189 189 HIS HIS A . n A 1 157 THR 157 190 190 THR THR A . n A 1 158 SER 158 191 191 SER SER A . n A 1 159 ASP 159 192 192 ASP ASP A . n A 1 160 ASN 160 193 193 ASN ASN A . n A 1 161 ILE 161 194 194 ILE ILE A . n A 1 162 THR 162 195 195 THR THR A . n A 1 163 VAL 163 196 196 VAL VAL A . n A 1 164 GLY 164 197 197 GLY GLY A . n A 1 165 ILE 165 198 198 ILE ILE A . n A 1 166 ASP 166 199 199 ASP ASP A . n A 1 167 GLY 167 200 200 GLY GLY A . n A 1 168 THR 168 201 201 THR THR A . n A 1 169 ASP 169 202 202 ASP ASP A . n A 1 170 ILE 170 203 203 ILE ILE A . n A 1 171 ALA 171 204 204 ALA ALA A . n A 1 172 PHE 172 205 205 PHE PHE A . n A 1 173 GLY 173 206 206 GLY GLY A . n A 1 174 GLY 174 207 207 GLY GLY A . n A 1 175 CYS 175 208 208 CYS CYS A . n A 1 176 LEU 176 209 209 LEU LEU A . n A 1 177 ILE 177 210 210 ILE ILE A . n A 1 178 LYS 178 211 211 LYS LYS A . n A 1 179 ASP 179 212 212 ASP ASP A . n A 1 180 SER 180 213 213 SER SER A . n A 1 181 LYS 181 214 214 LYS LYS A . n A 1 182 ALA 182 215 215 ALA ALA A . n A 1 183 LYS 183 216 216 LYS LYS A . n A 1 184 SER 184 217 217 SER SER A . n A 1 185 LEU 185 218 218 LEU LEU A . n A 1 186 GLY 186 219 219 GLY GLY A . n A 1 187 ASN 187 220 220 ASN ASN A . n A 1 188 LEU 188 221 221 LEU LEU A . n A 1 189 GLY 189 222 222 GLY GLY A . n A 1 190 ASP 190 223 223 ASP ASP A . n A 1 191 ALA 191 224 224 ALA ALA A . n A 1 192 ASP 192 225 225 ASP ASP A . n A 1 193 THR 193 226 226 THR THR A . n A 1 194 GLU 194 227 227 GLU GLU A . n A 1 195 HIS 195 228 228 HIS HIS A . n A 1 196 TYR 196 229 229 TYR TYR A . n A 1 197 ALA 197 230 230 ALA ALA A . n A 1 198 ALA 198 231 231 ALA ALA A . n A 1 199 SER 199 232 232 SER SER A . n A 1 200 ALA 200 233 233 ALA ALA A . n A 1 201 ARG 201 234 234 ARG ARG A . n A 1 202 ALA 202 235 235 ALA ALA A . n A 1 203 PHE 203 236 236 PHE PHE A . n A 1 204 GLY 204 237 237 GLY GLY A . n A 1 205 ALA 205 238 238 ALA ALA A . n A 1 206 ALA 206 239 239 ALA ALA A . n A 1 207 PHE 207 240 240 PHE PHE A . n A 1 208 PRO 208 241 241 PRO PRO A . n A 1 209 LYS 209 242 242 LYS LYS A . n A 1 210 ALA 210 243 243 ALA ALA A . n A 1 211 SER 211 244 244 SER SER A . n A 1 212 MET 212 245 245 MET MET A . n A 1 213 ILE 213 246 246 ILE ILE A . n A 1 214 VAL 214 247 247 VAL VAL A . n A 1 215 MET 215 248 248 MET MET A . n A 1 216 SER 216 249 249 SER SER A . n A 1 217 HIS 217 250 250 HIS HIS A . n A 1 218 SER 218 251 251 SER SER A . n A 1 219 ALA 219 252 252 ALA ALA A . n A 1 220 PRO 220 253 253 PRO PRO A . n A 1 221 ASP 221 254 254 ASP ASP A . n A 1 222 SER 222 255 255 SER SER A . n A 1 223 ARG 223 256 256 ARG ARG A . n A 1 224 ALA 224 257 257 ALA ALA A . n A 1 225 ALA 225 258 258 ALA ALA A . n A 1 226 ILE 226 259 259 ILE ILE A . n A 1 227 THR 227 260 260 THR THR A . n A 1 228 HIS 228 261 261 HIS HIS A . n A 1 229 THR 229 262 262 THR THR A . n A 1 230 ALA 230 263 263 ALA ALA A . n A 1 231 ARG 231 264 264 ARG ARG A . n A 1 232 MET 232 265 265 MET MET A . n A 1 233 ALA 233 266 266 ALA ALA A . n A 1 234 ASP 234 267 267 ASP ASP A . n A 1 235 LYS 235 268 268 LYS LYS A . n A 1 236 LEU 236 269 269 LEU LEU A . n A 1 237 ARG 237 270 ? ? ? A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'Midwest Center for Structural Genomics' MCSG 2 PSI:Biology 'Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors' MTBI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT 1 281 281 CIT CIT A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 271 34 HOH HOH A . C 3 HOH 35 272 35 HOH HOH A . C 3 HOH 36 273 36 HOH HOH A . C 3 HOH 37 274 37 HOH HOH A . C 3 HOH 38 275 38 HOH HOH A . C 3 HOH 39 276 39 HOH HOH A . C 3 HOH 40 277 40 HOH HOH A . C 3 HOH 41 278 41 HOH HOH A . C 3 HOH 42 279 42 HOH HOH A . C 3 HOH 43 280 43 HOH HOH A . C 3 HOH 44 282 44 HOH HOH A . C 3 HOH 45 283 45 HOH HOH A . C 3 HOH 46 284 46 HOH HOH A . C 3 HOH 47 285 47 HOH HOH A . C 3 HOH 48 286 48 HOH HOH A . C 3 HOH 49 287 49 HOH HOH A . C 3 HOH 50 288 50 HOH HOH A . C 3 HOH 51 289 51 HOH HOH A . C 3 HOH 52 290 52 HOH HOH A . C 3 HOH 53 291 53 HOH HOH A . C 3 HOH 54 292 54 HOH HOH A . C 3 HOH 55 293 55 HOH HOH A . C 3 HOH 56 294 56 HOH HOH A . C 3 HOH 57 295 57 HOH HOH A . C 3 HOH 58 296 58 HOH HOH A . C 3 HOH 59 297 59 HOH HOH A . C 3 HOH 60 298 60 HOH HOH A . C 3 HOH 61 299 61 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2,3,4 A,B,C 3 1,2 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 10010 ? 2 MORE -36 ? 2 'SSA (A^2)' 32520 ? 3 'ABSA (A^2)' 2240 ? 3 MORE -16 ? 3 'SSA (A^2)' 18410 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -105.4010000000 4 'crystal symmetry operation' 4_554 x,-y,-z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -105.4010000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-09-21 4 'Structure model' 1 3 2012-03-28 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -8.0321 -18.2812 -49.9851 0.1907 0.3762 0.3909 -0.0203 0.0096 0.0819 4.6534 3.6783 4.4615 -0.0275 -0.0827 -1.7089 -0.1572 0.4323 -0.1042 -0.2448 0.2660 -0.0231 0.0526 -0.1347 -0.0497 'X-RAY DIFFRACTION' 2 ? refined -13.6370 -15.8996 -40.1375 0.1878 0.2710 0.3180 0.0160 -0.0018 0.0578 4.8974 3.1524 3.5721 1.1958 -1.1284 -0.0841 0.1815 0.1926 0.2211 0.0002 0.1089 0.2502 -0.1699 -0.3170 -0.2451 'X-RAY DIFFRACTION' 3 ? refined -6.4270 -16.9236 -25.8326 0.3430 0.3084 0.3381 -0.0315 0.0847 -0.0373 8.1091 1.3942 4.2565 -1.7112 0.6768 -0.8387 0.0900 -0.4958 0.0953 -0.0510 0.1786 -0.0452 -0.3314 0.1740 -0.2895 'X-RAY DIFFRACTION' 4 ? refined 1.8923 -20.6758 -37.7643 0.2245 0.3250 0.2376 0.0849 -0.0050 0.0300 7.1782 9.2479 5.1065 4.2083 0.3763 1.9365 -0.3415 -0.4050 0.0821 0.0647 -0.0167 0.3634 -0.0018 -0.2141 0.3395 'X-RAY DIFFRACTION' 5 ? refined 9.1522 -13.1311 -35.2146 0.2373 0.3284 0.4501 0.0304 -0.0401 0.0541 3.8725 2.8156 5.4249 1.7421 2.0658 -0.6000 -0.3566 0.0920 0.7686 0.1199 -0.0999 -0.0690 -0.4368 0.3202 0.4751 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 38:67) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 68:137) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 138:194) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 195:212) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 213:269) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 phasing . ? 3 MOLREP phasing . ? 4 PHENIX refinement '(phenix.refine: dev_761)' ? 5 HKL-3000 'data reduction' . ? 6 HKL-3000 'data scaling' . ? 7 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 TYR _pdbx_validate_rmsd_angle.auth_seq_id_1 184 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 185 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 185 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.57 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.27 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 90 ? ? 50.21 -154.52 2 1 ILE A 109 ? ? -127.71 -56.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 34 ? A SER 1 2 1 Y 1 A ASN 35 ? A ASN 2 3 1 Y 1 A ALA 36 ? A ALA 3 4 1 Y 1 A ASN 37 ? A ASN 4 5 1 Y 1 A ARG 270 ? A ARG 237 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CIT C1 C N N 74 CIT O1 O N N 75 CIT O2 O N N 76 CIT C2 C N N 77 CIT C3 C N N 78 CIT O7 O N N 79 CIT C4 C N N 80 CIT C5 C N N 81 CIT O3 O N N 82 CIT O4 O N N 83 CIT C6 C N N 84 CIT O5 O N N 85 CIT O6 O N N 86 CIT HO2 H N N 87 CIT H21 H N N 88 CIT H22 H N N 89 CIT HO7 H N N 90 CIT H41 H N N 91 CIT H42 H N N 92 CIT HO4 H N N 93 CIT HO6 H N N 94 CYS N N N N 95 CYS CA C N R 96 CYS C C N N 97 CYS O O N N 98 CYS CB C N N 99 CYS SG S N N 100 CYS OXT O N N 101 CYS H H N N 102 CYS H2 H N N 103 CYS HA H N N 104 CYS HB2 H N N 105 CYS HB3 H N N 106 CYS HG H N N 107 CYS HXT H N N 108 GLN N N N N 109 GLN CA C N S 110 GLN C C N N 111 GLN O O N N 112 GLN CB C N N 113 GLN CG C N N 114 GLN CD C N N 115 GLN OE1 O N N 116 GLN NE2 N N N 117 GLN OXT O N N 118 GLN H H N N 119 GLN H2 H N N 120 GLN HA H N N 121 GLN HB2 H N N 122 GLN HB3 H N N 123 GLN HG2 H N N 124 GLN HG3 H N N 125 GLN HE21 H N N 126 GLN HE22 H N N 127 GLN HXT H N N 128 GLU N N N N 129 GLU CA C N S 130 GLU C C N N 131 GLU O O N N 132 GLU CB C N N 133 GLU CG C N N 134 GLU CD C N N 135 GLU OE1 O N N 136 GLU OE2 O N N 137 GLU OXT O N N 138 GLU H H N N 139 GLU H2 H N N 140 GLU HA H N N 141 GLU HB2 H N N 142 GLU HB3 H N N 143 GLU HG2 H N N 144 GLU HG3 H N N 145 GLU HE2 H N N 146 GLU HXT H N N 147 GLY N N N N 148 GLY CA C N N 149 GLY C C N N 150 GLY O O N N 151 GLY OXT O N N 152 GLY H H N N 153 GLY H2 H N N 154 GLY HA2 H N N 155 GLY HA3 H N N 156 GLY HXT H N N 157 HIS N N N N 158 HIS CA C N S 159 HIS C C N N 160 HIS O O N N 161 HIS CB C N N 162 HIS CG C Y N 163 HIS ND1 N Y N 164 HIS CD2 C Y N 165 HIS CE1 C Y N 166 HIS NE2 N Y N 167 HIS OXT O N N 168 HIS H H N N 169 HIS H2 H N N 170 HIS HA H N N 171 HIS HB2 H N N 172 HIS HB3 H N N 173 HIS HD1 H N N 174 HIS HD2 H N N 175 HIS HE1 H N N 176 HIS HE2 H N N 177 HIS HXT H N N 178 HOH O O N N 179 HOH H1 H N N 180 HOH H2 H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MET N N N N 251 MET CA C N S 252 MET C C N N 253 MET O O N N 254 MET CB C N N 255 MET CG C N N 256 MET SD S N N 257 MET CE C N N 258 MET OXT O N N 259 MET H H N N 260 MET H2 H N N 261 MET HA H N N 262 MET HB2 H N N 263 MET HB3 H N N 264 MET HG2 H N N 265 MET HG3 H N N 266 MET HE1 H N N 267 MET HE2 H N N 268 MET HE3 H N N 269 MET HXT H N N 270 PHE N N N N 271 PHE CA C N S 272 PHE C C N N 273 PHE O O N N 274 PHE CB C N N 275 PHE CG C Y N 276 PHE CD1 C Y N 277 PHE CD2 C Y N 278 PHE CE1 C Y N 279 PHE CE2 C Y N 280 PHE CZ C Y N 281 PHE OXT O N N 282 PHE H H N N 283 PHE H2 H N N 284 PHE HA H N N 285 PHE HB2 H N N 286 PHE HB3 H N N 287 PHE HD1 H N N 288 PHE HD2 H N N 289 PHE HE1 H N N 290 PHE HE2 H N N 291 PHE HZ H N N 292 PHE HXT H N N 293 PRO N N N N 294 PRO CA C N S 295 PRO C C N N 296 PRO O O N N 297 PRO CB C N N 298 PRO CG C N N 299 PRO CD C N N 300 PRO OXT O N N 301 PRO H H N N 302 PRO HA H N N 303 PRO HB2 H N N 304 PRO HB3 H N N 305 PRO HG2 H N N 306 PRO HG3 H N N 307 PRO HD2 H N N 308 PRO HD3 H N N 309 PRO HXT H N N 310 SER N N N N 311 SER CA C N S 312 SER C C N N 313 SER O O N N 314 SER CB C N N 315 SER OG O N N 316 SER OXT O N N 317 SER H H N N 318 SER H2 H N N 319 SER HA H N N 320 SER HB2 H N N 321 SER HB3 H N N 322 SER HG H N N 323 SER HXT H N N 324 THR N N N N 325 THR CA C N S 326 THR C C N N 327 THR O O N N 328 THR CB C N R 329 THR OG1 O N N 330 THR CG2 C N N 331 THR OXT O N N 332 THR H H N N 333 THR H2 H N N 334 THR HA H N N 335 THR HB H N N 336 THR HG1 H N N 337 THR HG21 H N N 338 THR HG22 H N N 339 THR HG23 H N N 340 THR HXT H N N 341 TRP N N N N 342 TRP CA C N S 343 TRP C C N N 344 TRP O O N N 345 TRP CB C N N 346 TRP CG C Y N 347 TRP CD1 C Y N 348 TRP CD2 C Y N 349 TRP NE1 N Y N 350 TRP CE2 C Y N 351 TRP CE3 C Y N 352 TRP CZ2 C Y N 353 TRP CZ3 C Y N 354 TRP CH2 C Y N 355 TRP OXT O N N 356 TRP H H N N 357 TRP H2 H N N 358 TRP HA H N N 359 TRP HB2 H N N 360 TRP HB3 H N N 361 TRP HD1 H N N 362 TRP HE1 H N N 363 TRP HE3 H N N 364 TRP HZ2 H N N 365 TRP HZ3 H N N 366 TRP HH2 H N N 367 TRP HXT H N N 368 TYR N N N N 369 TYR CA C N S 370 TYR C C N N 371 TYR O O N N 372 TYR CB C N N 373 TYR CG C Y N 374 TYR CD1 C Y N 375 TYR CD2 C Y N 376 TYR CE1 C Y N 377 TYR CE2 C Y N 378 TYR CZ C Y N 379 TYR OH O N N 380 TYR OXT O N N 381 TYR H H N N 382 TYR H2 H N N 383 TYR HA H N N 384 TYR HB2 H N N 385 TYR HB3 H N N 386 TYR HD1 H N N 387 TYR HD2 H N N 388 TYR HE1 H N N 389 TYR HE2 H N N 390 TYR HH H N N 391 TYR HXT H N N 392 VAL N N N N 393 VAL CA C N S 394 VAL C C N N 395 VAL O O N N 396 VAL CB C N N 397 VAL CG1 C N N 398 VAL CG2 C N N 399 VAL OXT O N N 400 VAL H H N N 401 VAL H2 H N N 402 VAL HA H N N 403 VAL HB H N N 404 VAL HG11 H N N 405 VAL HG12 H N N 406 VAL HG13 H N N 407 VAL HG21 H N N 408 VAL HG22 H N N 409 VAL HG23 H N N 410 VAL HXT H N N 411 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CIT C1 O1 doub N N 70 CIT C1 O2 sing N N 71 CIT C1 C2 sing N N 72 CIT O2 HO2 sing N N 73 CIT C2 C3 sing N N 74 CIT C2 H21 sing N N 75 CIT C2 H22 sing N N 76 CIT C3 O7 sing N N 77 CIT C3 C4 sing N N 78 CIT C3 C6 sing N N 79 CIT O7 HO7 sing N N 80 CIT C4 C5 sing N N 81 CIT C4 H41 sing N N 82 CIT C4 H42 sing N N 83 CIT C5 O3 doub N N 84 CIT C5 O4 sing N N 85 CIT O4 HO4 sing N N 86 CIT C6 O5 doub N N 87 CIT C6 O6 sing N N 88 CIT O6 HO6 sing N N 89 CYS N CA sing N N 90 CYS N H sing N N 91 CYS N H2 sing N N 92 CYS CA C sing N N 93 CYS CA CB sing N N 94 CYS CA HA sing N N 95 CYS C O doub N N 96 CYS C OXT sing N N 97 CYS CB SG sing N N 98 CYS CB HB2 sing N N 99 CYS CB HB3 sing N N 100 CYS SG HG sing N N 101 CYS OXT HXT sing N N 102 GLN N CA sing N N 103 GLN N H sing N N 104 GLN N H2 sing N N 105 GLN CA C sing N N 106 GLN CA CB sing N N 107 GLN CA HA sing N N 108 GLN C O doub N N 109 GLN C OXT sing N N 110 GLN CB CG sing N N 111 GLN CB HB2 sing N N 112 GLN CB HB3 sing N N 113 GLN CG CD sing N N 114 GLN CG HG2 sing N N 115 GLN CG HG3 sing N N 116 GLN CD OE1 doub N N 117 GLN CD NE2 sing N N 118 GLN NE2 HE21 sing N N 119 GLN NE2 HE22 sing N N 120 GLN OXT HXT sing N N 121 GLU N CA sing N N 122 GLU N H sing N N 123 GLU N H2 sing N N 124 GLU CA C sing N N 125 GLU CA CB sing N N 126 GLU CA HA sing N N 127 GLU C O doub N N 128 GLU C OXT sing N N 129 GLU CB CG sing N N 130 GLU CB HB2 sing N N 131 GLU CB HB3 sing N N 132 GLU CG CD sing N N 133 GLU CG HG2 sing N N 134 GLU CG HG3 sing N N 135 GLU CD OE1 doub N N 136 GLU CD OE2 sing N N 137 GLU OE2 HE2 sing N N 138 GLU OXT HXT sing N N 139 GLY N CA sing N N 140 GLY N H sing N N 141 GLY N H2 sing N N 142 GLY CA C sing N N 143 GLY CA HA2 sing N N 144 GLY CA HA3 sing N N 145 GLY C O doub N N 146 GLY C OXT sing N N 147 GLY OXT HXT sing N N 148 HIS N CA sing N N 149 HIS N H sing N N 150 HIS N H2 sing N N 151 HIS CA C sing N N 152 HIS CA CB sing N N 153 HIS CA HA sing N N 154 HIS C O doub N N 155 HIS C OXT sing N N 156 HIS CB CG sing N N 157 HIS CB HB2 sing N N 158 HIS CB HB3 sing N N 159 HIS CG ND1 sing Y N 160 HIS CG CD2 doub Y N 161 HIS ND1 CE1 doub Y N 162 HIS ND1 HD1 sing N N 163 HIS CD2 NE2 sing Y N 164 HIS CD2 HD2 sing N N 165 HIS CE1 NE2 sing Y N 166 HIS CE1 HE1 sing N N 167 HIS NE2 HE2 sing N N 168 HIS OXT HXT sing N N 169 HOH O H1 sing N N 170 HOH O H2 sing N N 171 ILE N CA sing N N 172 ILE N H sing N N 173 ILE N H2 sing N N 174 ILE CA C sing N N 175 ILE CA CB sing N N 176 ILE CA HA sing N N 177 ILE C O doub N N 178 ILE C OXT sing N N 179 ILE CB CG1 sing N N 180 ILE CB CG2 sing N N 181 ILE CB HB sing N N 182 ILE CG1 CD1 sing N N 183 ILE CG1 HG12 sing N N 184 ILE CG1 HG13 sing N N 185 ILE CG2 HG21 sing N N 186 ILE CG2 HG22 sing N N 187 ILE CG2 HG23 sing N N 188 ILE CD1 HD11 sing N N 189 ILE CD1 HD12 sing N N 190 ILE CD1 HD13 sing N N 191 ILE OXT HXT sing N N 192 LEU N CA sing N N 193 LEU N H sing N N 194 LEU N H2 sing N N 195 LEU CA C sing N N 196 LEU CA CB sing N N 197 LEU CA HA sing N N 198 LEU C O doub N N 199 LEU C OXT sing N N 200 LEU CB CG sing N N 201 LEU CB HB2 sing N N 202 LEU CB HB3 sing N N 203 LEU CG CD1 sing N N 204 LEU CG CD2 sing N N 205 LEU CG HG sing N N 206 LEU CD1 HD11 sing N N 207 LEU CD1 HD12 sing N N 208 LEU CD1 HD13 sing N N 209 LEU CD2 HD21 sing N N 210 LEU CD2 HD22 sing N N 211 LEU CD2 HD23 sing N N 212 LEU OXT HXT sing N N 213 LYS N CA sing N N 214 LYS N H sing N N 215 LYS N H2 sing N N 216 LYS CA C sing N N 217 LYS CA CB sing N N 218 LYS CA HA sing N N 219 LYS C O doub N N 220 LYS C OXT sing N N 221 LYS CB CG sing N N 222 LYS CB HB2 sing N N 223 LYS CB HB3 sing N N 224 LYS CG CD sing N N 225 LYS CG HG2 sing N N 226 LYS CG HG3 sing N N 227 LYS CD CE sing N N 228 LYS CD HD2 sing N N 229 LYS CD HD3 sing N N 230 LYS CE NZ sing N N 231 LYS CE HE2 sing N N 232 LYS CE HE3 sing N N 233 LYS NZ HZ1 sing N N 234 LYS NZ HZ2 sing N N 235 LYS NZ HZ3 sing N N 236 LYS OXT HXT sing N N 237 MET N CA sing N N 238 MET N H sing N N 239 MET N H2 sing N N 240 MET CA C sing N N 241 MET CA CB sing N N 242 MET CA HA sing N N 243 MET C O doub N N 244 MET C OXT sing N N 245 MET CB CG sing N N 246 MET CB HB2 sing N N 247 MET CB HB3 sing N N 248 MET CG SD sing N N 249 MET CG HG2 sing N N 250 MET CG HG3 sing N N 251 MET SD CE sing N N 252 MET CE HE1 sing N N 253 MET CE HE2 sing N N 254 MET CE HE3 sing N N 255 MET OXT HXT sing N N 256 PHE N CA sing N N 257 PHE N H sing N N 258 PHE N H2 sing N N 259 PHE CA C sing N N 260 PHE CA CB sing N N 261 PHE CA HA sing N N 262 PHE C O doub N N 263 PHE C OXT sing N N 264 PHE CB CG sing N N 265 PHE CB HB2 sing N N 266 PHE CB HB3 sing N N 267 PHE CG CD1 doub Y N 268 PHE CG CD2 sing Y N 269 PHE CD1 CE1 sing Y N 270 PHE CD1 HD1 sing N N 271 PHE CD2 CE2 doub Y N 272 PHE CD2 HD2 sing N N 273 PHE CE1 CZ doub Y N 274 PHE CE1 HE1 sing N N 275 PHE CE2 CZ sing Y N 276 PHE CE2 HE2 sing N N 277 PHE CZ HZ sing N N 278 PHE OXT HXT sing N N 279 PRO N CA sing N N 280 PRO N CD sing N N 281 PRO N H sing N N 282 PRO CA C sing N N 283 PRO CA CB sing N N 284 PRO CA HA sing N N 285 PRO C O doub N N 286 PRO C OXT sing N N 287 PRO CB CG sing N N 288 PRO CB HB2 sing N N 289 PRO CB HB3 sing N N 290 PRO CG CD sing N N 291 PRO CG HG2 sing N N 292 PRO CG HG3 sing N N 293 PRO CD HD2 sing N N 294 PRO CD HD3 sing N N 295 PRO OXT HXT sing N N 296 SER N CA sing N N 297 SER N H sing N N 298 SER N H2 sing N N 299 SER CA C sing N N 300 SER CA CB sing N N 301 SER CA HA sing N N 302 SER C O doub N N 303 SER C OXT sing N N 304 SER CB OG sing N N 305 SER CB HB2 sing N N 306 SER CB HB3 sing N N 307 SER OG HG sing N N 308 SER OXT HXT sing N N 309 THR N CA sing N N 310 THR N H sing N N 311 THR N H2 sing N N 312 THR CA C sing N N 313 THR CA CB sing N N 314 THR CA HA sing N N 315 THR C O doub N N 316 THR C OXT sing N N 317 THR CB OG1 sing N N 318 THR CB CG2 sing N N 319 THR CB HB sing N N 320 THR OG1 HG1 sing N N 321 THR CG2 HG21 sing N N 322 THR CG2 HG22 sing N N 323 THR CG2 HG23 sing N N 324 THR OXT HXT sing N N 325 TRP N CA sing N N 326 TRP N H sing N N 327 TRP N H2 sing N N 328 TRP CA C sing N N 329 TRP CA CB sing N N 330 TRP CA HA sing N N 331 TRP C O doub N N 332 TRP C OXT sing N N 333 TRP CB CG sing N N 334 TRP CB HB2 sing N N 335 TRP CB HB3 sing N N 336 TRP CG CD1 doub Y N 337 TRP CG CD2 sing Y N 338 TRP CD1 NE1 sing Y N 339 TRP CD1 HD1 sing N N 340 TRP CD2 CE2 doub Y N 341 TRP CD2 CE3 sing Y N 342 TRP NE1 CE2 sing Y N 343 TRP NE1 HE1 sing N N 344 TRP CE2 CZ2 sing Y N 345 TRP CE3 CZ3 doub Y N 346 TRP CE3 HE3 sing N N 347 TRP CZ2 CH2 doub Y N 348 TRP CZ2 HZ2 sing N N 349 TRP CZ3 CH2 sing Y N 350 TRP CZ3 HZ3 sing N N 351 TRP CH2 HH2 sing N N 352 TRP OXT HXT sing N N 353 TYR N CA sing N N 354 TYR N H sing N N 355 TYR N H2 sing N N 356 TYR CA C sing N N 357 TYR CA CB sing N N 358 TYR CA HA sing N N 359 TYR C O doub N N 360 TYR C OXT sing N N 361 TYR CB CG sing N N 362 TYR CB HB2 sing N N 363 TYR CB HB3 sing N N 364 TYR CG CD1 doub Y N 365 TYR CG CD2 sing Y N 366 TYR CD1 CE1 sing Y N 367 TYR CD1 HD1 sing N N 368 TYR CD2 CE2 doub Y N 369 TYR CD2 HD2 sing N N 370 TYR CE1 CZ doub Y N 371 TYR CE1 HE1 sing N N 372 TYR CE2 CZ sing Y N 373 TYR CE2 HE2 sing N N 374 TYR CZ OH sing N N 375 TYR OH HH sing N N 376 TYR OXT HXT sing N N 377 VAL N CA sing N N 378 VAL N H sing N N 379 VAL N H2 sing N N 380 VAL CA C sing N N 381 VAL CA CB sing N N 382 VAL CA HA sing N N 383 VAL C O doub N N 384 VAL C OXT sing N N 385 VAL CB CG1 sing N N 386 VAL CB CG2 sing N N 387 VAL CB HB sing N N 388 VAL CG1 HG11 sing N N 389 VAL CG1 HG12 sing N N 390 VAL CG1 HG13 sing N N 391 VAL CG2 HG21 sing N N 392 VAL CG2 HG22 sing N N 393 VAL CG2 HG23 sing N N 394 VAL OXT HXT sing N N 395 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRIC ACID' CIT 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3RKK _pdbx_initial_refinement_model.details 'PDB 3RKK' #