data_3SDG # _entry.id 3SDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SDG pdb_00003sdg 10.2210/pdb3sdg/pdb RCSB RCSB066069 ? ? WWPDB D_1000066069 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-07 2 'Structure model' 1 1 2012-01-25 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SDG _pdbx_database_status.recvd_initial_deposition_date 2011-06-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O8G 'EthR from Mycobacterium tuberculosis in complex with compound BDM14801' unspecified PDB 3O8H 'EthR from Mycobacterium tuberculosis in complex with compound BDM14950' unspecified PDB 3G1L 'EthR from Mycobacterium tuberculosis in complex with compound BDM14744' unspecified PDB 3G1M 'EthR from Mycobacterium tuberculosis in complex with compound BDM31381' unspecified PDB 1U9N ;Crystal structure of the transcriptional regulator EthR in a ligand bound conformation opens therapeutic perspectives against tuberculosis and leprosy ; unspecified PDB 3SFI . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Flipo, M.' 1 'Desroses, M.' 2 'Lecat-Guillet, N.' 3 'Villemagne, B.' 4 'Blondiaux, N.' 5 'Leroux, F.' 6 'Piveteau, C.' 7 'Mathys, V.' 8 'Flament, M.P.' 9 'Siepmann, J.' 10 'Villeret, V.' 11 'Wohlkonig, A.' 12 'Wintjens, R.' 13 'Soror, S.H.' 14 'Christophe, T.' 15 'Jeon, H.K.' 16 'Locht, C.' 17 'Brodin, P.' 18 'D prez, B.' 19 'Baulard, A.R.' 20 'Willand, N.' 21 # _citation.id primary _citation.title ;Ethionamide Boosters. 2. Combining Bioisosteric Replacement and Structure-Based Drug Design To Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors. ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 68 _citation.page_last 83 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22098589 _citation.pdbx_database_id_DOI 10.1021/jm200825u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Flipo, M.' 1 ? primary 'Desroses, M.' 2 ? primary 'Lecat-Guillet, N.' 3 ? primary 'Villemagne, B.' 4 ? primary 'Blondiaux, N.' 5 ? primary 'Leroux, F.' 6 ? primary 'Piveteau, C.' 7 ? primary 'Mathys, V.' 8 ? primary 'Flament, M.P.' 9 ? primary 'Siepmann, J.' 10 ? primary 'Villeret, V.' 11 ? primary 'Wohlkonig, A.' 12 ? primary 'Wintjens, R.' 13 ? primary 'Soror, S.H.' 14 ? primary 'Christophe, T.' 15 ? primary 'Jeon, H.K.' 16 ? primary 'Locht, C.' 17 ? primary 'Brodin, P.' 18 ? primary 'Deprez, B.' 19 ? primary 'Baulard, A.R.' 20 ? primary 'Willand, N.' 21 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HTH-type transcriptional regulator EthR' 25953.076 1 ? ? ? ? 2 non-polymer syn '4,4,4-trifluoro-1-{4-[3-(1,3-thiazol-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one' 360.355 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT FYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWST FMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT FYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWST FMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4,4,4-trifluoro-1-{4-[3-(1,3-thiazol-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one' 3SE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 THR n 1 23 THR n 1 24 SER n 1 25 ALA n 1 26 ALA n 1 27 SER n 1 28 GLN n 1 29 ALA n 1 30 SER n 1 31 LEU n 1 32 PRO n 1 33 ARG n 1 34 GLY n 1 35 ARG n 1 36 ARG n 1 37 THR n 1 38 ALA n 1 39 ARG n 1 40 PRO n 1 41 SER n 1 42 GLY n 1 43 ASP n 1 44 ASP n 1 45 ARG n 1 46 GLU n 1 47 LEU n 1 48 ALA n 1 49 ILE n 1 50 LEU n 1 51 ALA n 1 52 THR n 1 53 ALA n 1 54 GLU n 1 55 ASN n 1 56 LEU n 1 57 LEU n 1 58 GLU n 1 59 ASP n 1 60 ARG n 1 61 PRO n 1 62 LEU n 1 63 ALA n 1 64 ASP n 1 65 ILE n 1 66 SER n 1 67 VAL n 1 68 ASP n 1 69 ASP n 1 70 LEU n 1 71 ALA n 1 72 LYS n 1 73 GLY n 1 74 ALA n 1 75 GLY n 1 76 ILE n 1 77 SER n 1 78 ARG n 1 79 PRO n 1 80 THR n 1 81 PHE n 1 82 TYR n 1 83 PHE n 1 84 TYR n 1 85 PHE n 1 86 PRO n 1 87 SER n 1 88 LYS n 1 89 GLU n 1 90 ALA n 1 91 VAL n 1 92 LEU n 1 93 LEU n 1 94 THR n 1 95 LEU n 1 96 LEU n 1 97 ASP n 1 98 ARG n 1 99 VAL n 1 100 VAL n 1 101 ASN n 1 102 GLN n 1 103 ALA n 1 104 ASP n 1 105 MET n 1 106 ALA n 1 107 LEU n 1 108 GLN n 1 109 THR n 1 110 LEU n 1 111 ALA n 1 112 GLU n 1 113 ASN n 1 114 PRO n 1 115 ALA n 1 116 ASP n 1 117 THR n 1 118 ASP n 1 119 ARG n 1 120 GLU n 1 121 ASN n 1 122 MET n 1 123 TRP n 1 124 ARG n 1 125 THR n 1 126 GLY n 1 127 ILE n 1 128 ASN n 1 129 VAL n 1 130 PHE n 1 131 PHE n 1 132 GLU n 1 133 THR n 1 134 PHE n 1 135 GLY n 1 136 SER n 1 137 HIS n 1 138 LYS n 1 139 ALA n 1 140 VAL n 1 141 THR n 1 142 ARG n 1 143 ALA n 1 144 GLY n 1 145 GLN n 1 146 ALA n 1 147 ALA n 1 148 ARG n 1 149 ALA n 1 150 THR n 1 151 SER n 1 152 VAL n 1 153 GLU n 1 154 VAL n 1 155 ALA n 1 156 GLU n 1 157 LEU n 1 158 TRP n 1 159 SER n 1 160 THR n 1 161 PHE n 1 162 MET n 1 163 GLN n 1 164 LYS n 1 165 TRP n 1 166 ILE n 1 167 ALA n 1 168 TYR n 1 169 THR n 1 170 ALA n 1 171 ALA n 1 172 VAL n 1 173 ILE n 1 174 ASP n 1 175 ALA n 1 176 GLU n 1 177 ARG n 1 178 ASP n 1 179 ARG n 1 180 GLY n 1 181 ALA n 1 182 ALA n 1 183 PRO n 1 184 ARG n 1 185 THR n 1 186 LEU n 1 187 PRO n 1 188 ALA n 1 189 HIS n 1 190 GLU n 1 191 LEU n 1 192 ALA n 1 193 THR n 1 194 ALA n 1 195 LEU n 1 196 ASN n 1 197 LEU n 1 198 MET n 1 199 ASN n 1 200 GLU n 1 201 ARG n 1 202 THR n 1 203 LEU n 1 204 PHE n 1 205 ALA n 1 206 SER n 1 207 PHE n 1 208 ALA n 1 209 GLY n 1 210 GLU n 1 211 GLN n 1 212 PRO n 1 213 SER n 1 214 VAL n 1 215 PRO n 1 216 GLU n 1 217 ALA n 1 218 ARG n 1 219 VAL n 1 220 LEU n 1 221 ASP n 1 222 THR n 1 223 LEU n 1 224 VAL n 1 225 HIS n 1 226 ILE n 1 227 TRP n 1 228 VAL n 1 229 THR n 1 230 SER n 1 231 ILE n 1 232 TYR n 1 233 GLY n 1 234 GLU n 1 235 ASN n 1 236 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'etaR, ethR, MT3970, Rv3855' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37Rv _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3SE non-polymer . '4,4,4-trifluoro-1-{4-[3-(1,3-thiazol-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one' ? 'C14 H15 F3 N4 O2 S' 360.355 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 THR 22 2 ? ? ? A . n A 1 23 THR 23 3 ? ? ? A . n A 1 24 SER 24 4 ? ? ? A . n A 1 25 ALA 25 5 ? ? ? A . n A 1 26 ALA 26 6 ? ? ? A . n A 1 27 SER 27 7 ? ? ? A . n A 1 28 GLN 28 8 ? ? ? A . n A 1 29 ALA 29 9 ? ? ? A . n A 1 30 SER 30 10 ? ? ? A . n A 1 31 LEU 31 11 ? ? ? A . n A 1 32 PRO 32 12 ? ? ? A . n A 1 33 ARG 33 13 ? ? ? A . n A 1 34 GLY 34 14 ? ? ? A . n A 1 35 ARG 35 15 ? ? ? A . n A 1 36 ARG 36 16 ? ? ? A . n A 1 37 THR 37 17 ? ? ? A . n A 1 38 ALA 38 18 ? ? ? A . n A 1 39 ARG 39 19 ? ? ? A . n A 1 40 PRO 40 20 ? ? ? A . n A 1 41 SER 41 21 ? ? ? A . n A 1 42 GLY 42 22 ? ? ? A . n A 1 43 ASP 43 23 ? ? ? A . n A 1 44 ASP 44 24 ? ? ? A . n A 1 45 ARG 45 25 ? ? ? A . n A 1 46 GLU 46 26 26 GLU GLU A . n A 1 47 LEU 47 27 27 LEU LEU A . n A 1 48 ALA 48 28 28 ALA ALA A . n A 1 49 ILE 49 29 29 ILE ILE A . n A 1 50 LEU 50 30 30 LEU LEU A . n A 1 51 ALA 51 31 31 ALA ALA A . n A 1 52 THR 52 32 32 THR THR A . n A 1 53 ALA 53 33 33 ALA ALA A . n A 1 54 GLU 54 34 34 GLU GLU A . n A 1 55 ASN 55 35 35 ASN ASN A . n A 1 56 LEU 56 36 36 LEU LEU A . n A 1 57 LEU 57 37 37 LEU LEU A . n A 1 58 GLU 58 38 38 GLU GLU A . n A 1 59 ASP 59 39 39 ASP ASP A . n A 1 60 ARG 60 40 40 ARG ARG A . n A 1 61 PRO 61 41 41 PRO PRO A . n A 1 62 LEU 62 42 42 LEU LEU A . n A 1 63 ALA 63 43 43 ALA ALA A . n A 1 64 ASP 64 44 44 ASP ASP A . n A 1 65 ILE 65 45 45 ILE ILE A . n A 1 66 SER 66 46 46 SER SER A . n A 1 67 VAL 67 47 47 VAL VAL A . n A 1 68 ASP 68 48 48 ASP ASP A . n A 1 69 ASP 69 49 49 ASP ASP A . n A 1 70 LEU 70 50 50 LEU LEU A . n A 1 71 ALA 71 51 51 ALA ALA A . n A 1 72 LYS 72 52 52 LYS LYS A . n A 1 73 GLY 73 53 53 GLY GLY A . n A 1 74 ALA 74 54 54 ALA ALA A . n A 1 75 GLY 75 55 55 GLY GLY A . n A 1 76 ILE 76 56 56 ILE ILE A . n A 1 77 SER 77 57 57 SER SER A . n A 1 78 ARG 78 58 58 ARG ARG A . n A 1 79 PRO 79 59 59 PRO PRO A . n A 1 80 THR 80 60 60 THR THR A . n A 1 81 PHE 81 61 61 PHE PHE A . n A 1 82 TYR 82 62 62 TYR TYR A . n A 1 83 PHE 83 63 63 PHE PHE A . n A 1 84 TYR 84 64 64 TYR TYR A . n A 1 85 PHE 85 65 65 PHE PHE A . n A 1 86 PRO 86 66 66 PRO PRO A . n A 1 87 SER 87 67 67 SER SER A . n A 1 88 LYS 88 68 68 LYS LYS A . n A 1 89 GLU 89 69 69 GLU GLU A . n A 1 90 ALA 90 70 70 ALA ALA A . n A 1 91 VAL 91 71 71 VAL VAL A . n A 1 92 LEU 92 72 72 LEU LEU A . n A 1 93 LEU 93 73 73 LEU LEU A . n A 1 94 THR 94 74 74 THR THR A . n A 1 95 LEU 95 75 75 LEU LEU A . n A 1 96 LEU 96 76 76 LEU LEU A . n A 1 97 ASP 97 77 77 ASP ASP A . n A 1 98 ARG 98 78 78 ARG ARG A . n A 1 99 VAL 99 79 79 VAL VAL A . n A 1 100 VAL 100 80 80 VAL VAL A . n A 1 101 ASN 101 81 81 ASN ASN A . n A 1 102 GLN 102 82 82 GLN GLN A . n A 1 103 ALA 103 83 83 ALA ALA A . n A 1 104 ASP 104 84 84 ASP ASP A . n A 1 105 MET 105 85 85 MET MET A . n A 1 106 ALA 106 86 86 ALA ALA A . n A 1 107 LEU 107 87 87 LEU LEU A . n A 1 108 GLN 108 88 88 GLN GLN A . n A 1 109 THR 109 89 89 THR THR A . n A 1 110 LEU 110 90 90 LEU LEU A . n A 1 111 ALA 111 91 91 ALA ALA A . n A 1 112 GLU 112 92 92 GLU GLU A . n A 1 113 ASN 113 93 ? ? ? A . n A 1 114 PRO 114 94 ? ? ? A . n A 1 115 ALA 115 95 ? ? ? A . n A 1 116 ASP 116 96 ? ? ? A . n A 1 117 THR 117 97 ? ? ? A . n A 1 118 ASP 118 98 98 ASP ASP A . n A 1 119 ARG 119 99 99 ARG ARG A . n A 1 120 GLU 120 100 100 GLU GLU A . n A 1 121 ASN 121 101 101 ASN ASN A . n A 1 122 MET 122 102 102 MET MET A . n A 1 123 TRP 123 103 103 TRP TRP A . n A 1 124 ARG 124 104 104 ARG ARG A . n A 1 125 THR 125 105 105 THR THR A . n A 1 126 GLY 126 106 106 GLY GLY A . n A 1 127 ILE 127 107 107 ILE ILE A . n A 1 128 ASN 128 108 108 ASN ASN A . n A 1 129 VAL 129 109 109 VAL VAL A . n A 1 130 PHE 130 110 110 PHE PHE A . n A 1 131 PHE 131 111 111 PHE PHE A . n A 1 132 GLU 132 112 112 GLU GLU A . n A 1 133 THR 133 113 113 THR THR A . n A 1 134 PHE 134 114 114 PHE PHE A . n A 1 135 GLY 135 115 115 GLY GLY A . n A 1 136 SER 136 116 116 SER SER A . n A 1 137 HIS 137 117 117 HIS HIS A . n A 1 138 LYS 138 118 118 LYS LYS A . n A 1 139 ALA 139 119 119 ALA ALA A . n A 1 140 VAL 140 120 120 VAL VAL A . n A 1 141 THR 141 121 121 THR THR A . n A 1 142 ARG 142 122 122 ARG ARG A . n A 1 143 ALA 143 123 123 ALA ALA A . n A 1 144 GLY 144 124 124 GLY GLY A . n A 1 145 GLN 145 125 125 GLN GLN A . n A 1 146 ALA 146 126 126 ALA ALA A . n A 1 147 ALA 147 127 127 ALA ALA A . n A 1 148 ARG 148 128 128 ARG ARG A . n A 1 149 ALA 149 129 129 ALA ALA A . n A 1 150 THR 150 130 130 THR THR A . n A 1 151 SER 151 131 131 SER SER A . n A 1 152 VAL 152 132 132 VAL VAL A . n A 1 153 GLU 153 133 133 GLU GLU A . n A 1 154 VAL 154 134 134 VAL VAL A . n A 1 155 ALA 155 135 135 ALA ALA A . n A 1 156 GLU 156 136 136 GLU GLU A . n A 1 157 LEU 157 137 137 LEU LEU A . n A 1 158 TRP 158 138 138 TRP TRP A . n A 1 159 SER 159 139 139 SER SER A . n A 1 160 THR 160 140 140 THR THR A . n A 1 161 PHE 161 141 141 PHE PHE A . n A 1 162 MET 162 142 142 MET MET A . n A 1 163 GLN 163 143 143 GLN GLN A . n A 1 164 LYS 164 144 144 LYS LYS A . n A 1 165 TRP 165 145 145 TRP TRP A . n A 1 166 ILE 166 146 146 ILE ILE A . n A 1 167 ALA 167 147 147 ALA ALA A . n A 1 168 TYR 168 148 148 TYR TYR A . n A 1 169 THR 169 149 149 THR THR A . n A 1 170 ALA 170 150 150 ALA ALA A . n A 1 171 ALA 171 151 151 ALA ALA A . n A 1 172 VAL 172 152 152 VAL VAL A . n A 1 173 ILE 173 153 153 ILE ILE A . n A 1 174 ASP 174 154 154 ASP ASP A . n A 1 175 ALA 175 155 155 ALA ALA A . n A 1 176 GLU 176 156 156 GLU GLU A . n A 1 177 ARG 177 157 157 ARG ARG A . n A 1 178 ASP 178 158 158 ASP ASP A . n A 1 179 ARG 179 159 159 ARG ARG A . n A 1 180 GLY 180 160 160 GLY GLY A . n A 1 181 ALA 181 161 161 ALA ALA A . n A 1 182 ALA 182 162 162 ALA ALA A . n A 1 183 PRO 183 163 163 PRO PRO A . n A 1 184 ARG 184 164 164 ARG ARG A . n A 1 185 THR 185 165 165 THR THR A . n A 1 186 LEU 186 166 166 LEU LEU A . n A 1 187 PRO 187 167 167 PRO PRO A . n A 1 188 ALA 188 168 168 ALA ALA A . n A 1 189 HIS 189 169 169 HIS HIS A . n A 1 190 GLU 190 170 170 GLU GLU A . n A 1 191 LEU 191 171 171 LEU LEU A . n A 1 192 ALA 192 172 172 ALA ALA A . n A 1 193 THR 193 173 173 THR THR A . n A 1 194 ALA 194 174 174 ALA ALA A . n A 1 195 LEU 195 175 175 LEU LEU A . n A 1 196 ASN 196 176 176 ASN ASN A . n A 1 197 LEU 197 177 177 LEU LEU A . n A 1 198 MET 198 178 178 MET MET A . n A 1 199 ASN 199 179 179 ASN ASN A . n A 1 200 GLU 200 180 180 GLU GLU A . n A 1 201 ARG 201 181 181 ARG ARG A . n A 1 202 THR 202 182 182 THR THR A . n A 1 203 LEU 203 183 183 LEU LEU A . n A 1 204 PHE 204 184 184 PHE PHE A . n A 1 205 ALA 205 185 185 ALA ALA A . n A 1 206 SER 206 186 186 SER SER A . n A 1 207 PHE 207 187 187 PHE PHE A . n A 1 208 ALA 208 188 188 ALA ALA A . n A 1 209 GLY 209 189 189 GLY GLY A . n A 1 210 GLU 210 190 190 GLU GLU A . n A 1 211 GLN 211 191 191 GLN GLN A . n A 1 212 PRO 212 192 192 PRO PRO A . n A 1 213 SER 213 193 193 SER SER A . n A 1 214 VAL 214 194 194 VAL VAL A . n A 1 215 PRO 215 195 195 PRO PRO A . n A 1 216 GLU 216 196 196 GLU GLU A . n A 1 217 ALA 217 197 197 ALA ALA A . n A 1 218 ARG 218 198 198 ARG ARG A . n A 1 219 VAL 219 199 199 VAL VAL A . n A 1 220 LEU 220 200 200 LEU LEU A . n A 1 221 ASP 221 201 201 ASP ASP A . n A 1 222 THR 222 202 202 THR THR A . n A 1 223 LEU 223 203 203 LEU LEU A . n A 1 224 VAL 224 204 204 VAL VAL A . n A 1 225 HIS 225 205 205 HIS HIS A . n A 1 226 ILE 226 206 206 ILE ILE A . n A 1 227 TRP 227 207 207 TRP TRP A . n A 1 228 VAL 228 208 208 VAL VAL A . n A 1 229 THR 229 209 209 THR THR A . n A 1 230 SER 230 210 210 SER SER A . n A 1 231 ILE 231 211 211 ILE ILE A . n A 1 232 TYR 232 212 212 TYR TYR A . n A 1 233 GLY 233 213 213 GLY GLY A . n A 1 234 GLU 234 214 214 GLU GLU A . n A 1 235 ASN 235 215 ? ? ? A . n A 1 236 ARG 236 216 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3SE 1 217 217 3SE 3SE A . C 3 HOH 1 218 218 HOH HOH A . C 3 HOH 2 219 219 HOH HOH A . C 3 HOH 3 220 220 HOH HOH A . C 3 HOH 4 221 221 HOH HOH A . C 3 HOH 5 222 222 HOH HOH A . C 3 HOH 6 223 223 HOH HOH A . C 3 HOH 7 224 224 HOH HOH A . C 3 HOH 8 225 225 HOH HOH A . C 3 HOH 9 226 226 HOH HOH A . C 3 HOH 10 227 227 HOH HOH A . C 3 HOH 11 228 228 HOH HOH A . C 3 HOH 12 229 229 HOH HOH A . C 3 HOH 13 230 230 HOH HOH A . C 3 HOH 14 231 231 HOH HOH A . C 3 HOH 15 232 232 HOH HOH A . C 3 HOH 16 233 233 HOH HOH A . C 3 HOH 17 234 234 HOH HOH A . C 3 HOH 18 235 235 HOH HOH A . C 3 HOH 19 236 236 HOH HOH A . C 3 HOH 20 237 237 HOH HOH A . C 3 HOH 21 238 238 HOH HOH A . C 3 HOH 22 239 239 HOH HOH A . C 3 HOH 23 240 240 HOH HOH A . C 3 HOH 24 241 241 HOH HOH A . C 3 HOH 25 242 242 HOH HOH A . C 3 HOH 26 243 243 HOH HOH A . C 3 HOH 27 244 244 HOH HOH A . C 3 HOH 28 245 245 HOH HOH A . C 3 HOH 29 246 246 HOH HOH A . C 3 HOH 30 247 247 HOH HOH A . C 3 HOH 31 248 248 HOH HOH A . C 3 HOH 32 249 249 HOH HOH A . C 3 HOH 33 250 250 HOH HOH A . C 3 HOH 34 251 251 HOH HOH A . C 3 HOH 35 252 252 HOH HOH A . C 3 HOH 36 253 253 HOH HOH A . C 3 HOH 37 254 254 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 214 ? C ? A GLU 234 C 2 1 Y 1 A GLU 214 ? O ? A GLU 234 O # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 3SDG _cell.length_a 121.820 _cell.length_b 121.820 _cell.length_c 33.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SDG _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SDG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.65M Ammonium Sulfate, 15% Glycerol, 0.1M MES pH6.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3SDG _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 33.79 _reflns.d_resolution_high 1.70 _reflns.number_obs 20446 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3SDG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20446 _refine.ls_number_reflns_all 20446 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.79 _refine.ls_d_res_high 1.87 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.20489 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20259 _refine.ls_R_factor_R_free 0.25038 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1105 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.B_iso_mean 23.283 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_ML 0.082 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.713 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1434 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1495 _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 33.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.028 0.022 ? 1489 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.047 1.966 ? 2029 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.892 5.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.278 23.433 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.528 15.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.527 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.161 0.200 ? 233 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 1132 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.336 1.500 ? 923 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.293 2.000 ? 1474 'X-RAY DIFFRACTION' ? r_scbond_it 3.706 3.000 ? 566 'X-RAY DIFFRACTION' ? r_scangle_it 5.942 4.500 ? 555 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.870 _refine_ls_shell.d_res_low 1.918 _refine_ls_shell.number_reflns_R_work 1446 _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3SDG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SDG _struct.title ;Ethionamide Boosters Part 2: Combining Bioisosteric Replacement and Structure-Based Drug Design to Solve Pharmacokinetic Issues in a Series of Potent 1,2,4-Oxadiazole EthR Inhibitors. ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SDG _struct_keywords.pdbx_keywords 'TRANSCRIPTION REPRESSOR/INHIBITOR' _struct_keywords.text ;TETR-FAMILY, INHIBITOR, DNA, TRANSCRIPTION REPRESSOR-INHIBITOR COMPLEX, DNA BINDING PROTEIN, TRANSCRITPTIONAL REGULATORY REPRESSOR, DNA BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ETHR_MYCTU _struct_ref.pdbx_db_accession P96222 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVV NQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG AAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SDG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 236 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P96222 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 216 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SDG MET A 1 ? UNP P96222 ? ? 'expression tag' -19 1 1 3SDG GLY A 2 ? UNP P96222 ? ? 'expression tag' -18 2 1 3SDG SER A 3 ? UNP P96222 ? ? 'expression tag' -17 3 1 3SDG SER A 4 ? UNP P96222 ? ? 'expression tag' -16 4 1 3SDG HIS A 5 ? UNP P96222 ? ? 'expression tag' -15 5 1 3SDG HIS A 6 ? UNP P96222 ? ? 'expression tag' -14 6 1 3SDG HIS A 7 ? UNP P96222 ? ? 'expression tag' -13 7 1 3SDG HIS A 8 ? UNP P96222 ? ? 'expression tag' -12 8 1 3SDG HIS A 9 ? UNP P96222 ? ? 'expression tag' -11 9 1 3SDG HIS A 10 ? UNP P96222 ? ? 'expression tag' -10 10 1 3SDG SER A 11 ? UNP P96222 ? ? 'expression tag' -9 11 1 3SDG SER A 12 ? UNP P96222 ? ? 'expression tag' -8 12 1 3SDG GLY A 13 ? UNP P96222 ? ? 'expression tag' -7 13 1 3SDG LEU A 14 ? UNP P96222 ? ? 'expression tag' -6 14 1 3SDG VAL A 15 ? UNP P96222 ? ? 'expression tag' -5 15 1 3SDG PRO A 16 ? UNP P96222 ? ? 'expression tag' -4 16 1 3SDG ARG A 17 ? UNP P96222 ? ? 'expression tag' -3 17 1 3SDG GLY A 18 ? UNP P96222 ? ? 'expression tag' -2 18 1 3SDG SER A 19 ? UNP P96222 ? ? 'expression tag' -1 19 1 3SDG HIS A 20 ? UNP P96222 ? ? 'expression tag' 0 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE -21 ? 1 'SSA (A^2)' 16280 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 46 ? ARG A 60 ? GLU A 26 ARG A 40 1 ? 15 HELX_P HELX_P2 2 PRO A 61 ? ILE A 65 ? PRO A 41 ILE A 45 5 ? 5 HELX_P HELX_P3 3 SER A 66 ? GLY A 75 ? SER A 46 GLY A 55 1 ? 10 HELX_P HELX_P4 4 SER A 77 ? PHE A 85 ? SER A 57 PHE A 65 1 ? 9 HELX_P HELX_P5 5 SER A 87 ? GLU A 112 ? SER A 67 GLU A 92 1 ? 26 HELX_P HELX_P6 6 ASP A 118 ? SER A 136 ? ASP A 98 SER A 116 1 ? 19 HELX_P HELX_P7 7 HIS A 137 ? ARG A 148 ? HIS A 117 ARG A 128 1 ? 12 HELX_P HELX_P8 8 SER A 151 ? ARG A 179 ? SER A 131 ARG A 159 1 ? 29 HELX_P HELX_P9 9 PRO A 187 ? ALA A 208 ? PRO A 167 ALA A 188 1 ? 22 HELX_P HELX_P10 10 PRO A 215 ? GLY A 233 ? PRO A 195 GLY A 213 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 211 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 191 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 212 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 192 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.35 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3SE _struct_site.pdbx_auth_seq_id 217 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE 3SE A 217' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 MET A 122 ? MET A 102 . ? 1_555 ? 2 AC1 11 GLY A 126 ? GLY A 106 . ? 1_555 ? 3 AC1 11 PHE A 130 ? PHE A 110 . ? 1_555 ? 4 AC1 11 TRP A 165 ? TRP A 145 . ? 1_555 ? 5 AC1 11 TYR A 168 ? TYR A 148 . ? 1_555 ? 6 AC1 11 THR A 169 ? THR A 149 . ? 1_555 ? 7 AC1 11 ASN A 196 ? ASN A 176 . ? 1_555 ? 8 AC1 11 ASN A 199 ? ASN A 179 . ? 1_555 ? 9 AC1 11 GLU A 200 ? GLU A 180 . ? 1_555 ? 10 AC1 11 LEU A 203 ? LEU A 183 . ? 1_555 ? 11 AC1 11 TRP A 227 ? TRP A 207 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 181 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 181 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 181 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.25 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.05 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 165 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -104.90 _pdbx_validate_torsion.psi -109.77 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 231 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A THR 2 ? A THR 22 23 1 Y 1 A THR 3 ? A THR 23 24 1 Y 1 A SER 4 ? A SER 24 25 1 Y 1 A ALA 5 ? A ALA 25 26 1 Y 1 A ALA 6 ? A ALA 26 27 1 Y 1 A SER 7 ? A SER 27 28 1 Y 1 A GLN 8 ? A GLN 28 29 1 Y 1 A ALA 9 ? A ALA 29 30 1 Y 1 A SER 10 ? A SER 30 31 1 Y 1 A LEU 11 ? A LEU 31 32 1 Y 1 A PRO 12 ? A PRO 32 33 1 Y 1 A ARG 13 ? A ARG 33 34 1 Y 1 A GLY 14 ? A GLY 34 35 1 Y 1 A ARG 15 ? A ARG 35 36 1 Y 1 A ARG 16 ? A ARG 36 37 1 Y 1 A THR 17 ? A THR 37 38 1 Y 1 A ALA 18 ? A ALA 38 39 1 Y 1 A ARG 19 ? A ARG 39 40 1 Y 1 A PRO 20 ? A PRO 40 41 1 Y 1 A SER 21 ? A SER 41 42 1 Y 1 A GLY 22 ? A GLY 42 43 1 Y 1 A ASP 23 ? A ASP 43 44 1 Y 1 A ASP 24 ? A ASP 44 45 1 Y 1 A ARG 25 ? A ARG 45 46 1 Y 1 A ASN 93 ? A ASN 113 47 1 Y 1 A PRO 94 ? A PRO 114 48 1 Y 1 A ALA 95 ? A ALA 115 49 1 Y 1 A ASP 96 ? A ASP 116 50 1 Y 1 A THR 97 ? A THR 117 51 1 Y 1 A ASN 215 ? A ASN 235 52 1 Y 1 A ARG 216 ? A ARG 236 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3SE O O N N 1 3SE C3 C N N 2 3SE C2 C N N 3 3SE C1 C N N 4 3SE C C N N 5 3SE F2 F N N 6 3SE F1 F N N 7 3SE F F N N 8 3SE N N N N 9 3SE C8 C N N 10 3SE C7 C N N 11 3SE C6 C N N 12 3SE C5 C N N 13 3SE C4 C N N 14 3SE C9 C Y N 15 3SE N2 N Y N 16 3SE C10 C Y N 17 3SE N1 N Y N 18 3SE O1 O Y N 19 3SE C11 C Y N 20 3SE S S Y N 21 3SE C13 C Y N 22 3SE C12 C Y N 23 3SE N3 N Y N 24 3SE H2 H N N 25 3SE H2A H N N 26 3SE H1 H N N 27 3SE H1A H N N 28 3SE H8 H N N 29 3SE H8A H N N 30 3SE H7 H N N 31 3SE H7A H N N 32 3SE H6 H N N 33 3SE H5 H N N 34 3SE H5A H N N 35 3SE H4 H N N 36 3SE H4A H N N 37 3SE H13 H N N 38 3SE H12 H N N 39 ALA N N N N 40 ALA CA C N S 41 ALA C C N N 42 ALA O O N N 43 ALA CB C N N 44 ALA OXT O N N 45 ALA H H N N 46 ALA H2 H N N 47 ALA HA H N N 48 ALA HB1 H N N 49 ALA HB2 H N N 50 ALA HB3 H N N 51 ALA HXT H N N 52 ARG N N N N 53 ARG CA C N S 54 ARG C C N N 55 ARG O O N N 56 ARG CB C N N 57 ARG CG C N N 58 ARG CD C N N 59 ARG NE N N N 60 ARG CZ C N N 61 ARG NH1 N N N 62 ARG NH2 N N N 63 ARG OXT O N N 64 ARG H H N N 65 ARG H2 H N N 66 ARG HA H N N 67 ARG HB2 H N N 68 ARG HB3 H N N 69 ARG HG2 H N N 70 ARG HG3 H N N 71 ARG HD2 H N N 72 ARG HD3 H N N 73 ARG HE H N N 74 ARG HH11 H N N 75 ARG HH12 H N N 76 ARG HH21 H N N 77 ARG HH22 H N N 78 ARG HXT H N N 79 ASN N N N N 80 ASN CA C N S 81 ASN C C N N 82 ASN O O N N 83 ASN CB C N N 84 ASN CG C N N 85 ASN OD1 O N N 86 ASN ND2 N N N 87 ASN OXT O N N 88 ASN H H N N 89 ASN H2 H N N 90 ASN HA H N N 91 ASN HB2 H N N 92 ASN HB3 H N N 93 ASN HD21 H N N 94 ASN HD22 H N N 95 ASN HXT H N N 96 ASP N N N N 97 ASP CA C N S 98 ASP C C N N 99 ASP O O N N 100 ASP CB C N N 101 ASP CG C N N 102 ASP OD1 O N N 103 ASP OD2 O N N 104 ASP OXT O N N 105 ASP H H N N 106 ASP H2 H N N 107 ASP HA H N N 108 ASP HB2 H N N 109 ASP HB3 H N N 110 ASP HD2 H N N 111 ASP HXT H N N 112 GLN N N N N 113 GLN CA C N S 114 GLN C C N N 115 GLN O O N N 116 GLN CB C N N 117 GLN CG C N N 118 GLN CD C N N 119 GLN OE1 O N N 120 GLN NE2 N N N 121 GLN OXT O N N 122 GLN H H N N 123 GLN H2 H N N 124 GLN HA H N N 125 GLN HB2 H N N 126 GLN HB3 H N N 127 GLN HG2 H N N 128 GLN HG3 H N N 129 GLN HE21 H N N 130 GLN HE22 H N N 131 GLN HXT H N N 132 GLU N N N N 133 GLU CA C N S 134 GLU C C N N 135 GLU O O N N 136 GLU CB C N N 137 GLU CG C N N 138 GLU CD C N N 139 GLU OE1 O N N 140 GLU OE2 O N N 141 GLU OXT O N N 142 GLU H H N N 143 GLU H2 H N N 144 GLU HA H N N 145 GLU HB2 H N N 146 GLU HB3 H N N 147 GLU HG2 H N N 148 GLU HG3 H N N 149 GLU HE2 H N N 150 GLU HXT H N N 151 GLY N N N N 152 GLY CA C N N 153 GLY C C N N 154 GLY O O N N 155 GLY OXT O N N 156 GLY H H N N 157 GLY H2 H N N 158 GLY HA2 H N N 159 GLY HA3 H N N 160 GLY HXT H N N 161 HIS N N N N 162 HIS CA C N S 163 HIS C C N N 164 HIS O O N N 165 HIS CB C N N 166 HIS CG C Y N 167 HIS ND1 N Y N 168 HIS CD2 C Y N 169 HIS CE1 C Y N 170 HIS NE2 N Y N 171 HIS OXT O N N 172 HIS H H N N 173 HIS H2 H N N 174 HIS HA H N N 175 HIS HB2 H N N 176 HIS HB3 H N N 177 HIS HD1 H N N 178 HIS HD2 H N N 179 HIS HE1 H N N 180 HIS HE2 H N N 181 HIS HXT H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 ILE N N N N 186 ILE CA C N S 187 ILE C C N N 188 ILE O O N N 189 ILE CB C N S 190 ILE CG1 C N N 191 ILE CG2 C N N 192 ILE CD1 C N N 193 ILE OXT O N N 194 ILE H H N N 195 ILE H2 H N N 196 ILE HA H N N 197 ILE HB H N N 198 ILE HG12 H N N 199 ILE HG13 H N N 200 ILE HG21 H N N 201 ILE HG22 H N N 202 ILE HG23 H N N 203 ILE HD11 H N N 204 ILE HD12 H N N 205 ILE HD13 H N N 206 ILE HXT H N N 207 LEU N N N N 208 LEU CA C N S 209 LEU C C N N 210 LEU O O N N 211 LEU CB C N N 212 LEU CG C N N 213 LEU CD1 C N N 214 LEU CD2 C N N 215 LEU OXT O N N 216 LEU H H N N 217 LEU H2 H N N 218 LEU HA H N N 219 LEU HB2 H N N 220 LEU HB3 H N N 221 LEU HG H N N 222 LEU HD11 H N N 223 LEU HD12 H N N 224 LEU HD13 H N N 225 LEU HD21 H N N 226 LEU HD22 H N N 227 LEU HD23 H N N 228 LEU HXT H N N 229 LYS N N N N 230 LYS CA C N S 231 LYS C C N N 232 LYS O O N N 233 LYS CB C N N 234 LYS CG C N N 235 LYS CD C N N 236 LYS CE C N N 237 LYS NZ N N N 238 LYS OXT O N N 239 LYS H H N N 240 LYS H2 H N N 241 LYS HA H N N 242 LYS HB2 H N N 243 LYS HB3 H N N 244 LYS HG2 H N N 245 LYS HG3 H N N 246 LYS HD2 H N N 247 LYS HD3 H N N 248 LYS HE2 H N N 249 LYS HE3 H N N 250 LYS HZ1 H N N 251 LYS HZ2 H N N 252 LYS HZ3 H N N 253 LYS HXT H N N 254 MET N N N N 255 MET CA C N S 256 MET C C N N 257 MET O O N N 258 MET CB C N N 259 MET CG C N N 260 MET SD S N N 261 MET CE C N N 262 MET OXT O N N 263 MET H H N N 264 MET H2 H N N 265 MET HA H N N 266 MET HB2 H N N 267 MET HB3 H N N 268 MET HG2 H N N 269 MET HG3 H N N 270 MET HE1 H N N 271 MET HE2 H N N 272 MET HE3 H N N 273 MET HXT H N N 274 PHE N N N N 275 PHE CA C N S 276 PHE C C N N 277 PHE O O N N 278 PHE CB C N N 279 PHE CG C Y N 280 PHE CD1 C Y N 281 PHE CD2 C Y N 282 PHE CE1 C Y N 283 PHE CE2 C Y N 284 PHE CZ C Y N 285 PHE OXT O N N 286 PHE H H N N 287 PHE H2 H N N 288 PHE HA H N N 289 PHE HB2 H N N 290 PHE HB3 H N N 291 PHE HD1 H N N 292 PHE HD2 H N N 293 PHE HE1 H N N 294 PHE HE2 H N N 295 PHE HZ H N N 296 PHE HXT H N N 297 PRO N N N N 298 PRO CA C N S 299 PRO C C N N 300 PRO O O N N 301 PRO CB C N N 302 PRO CG C N N 303 PRO CD C N N 304 PRO OXT O N N 305 PRO H H N N 306 PRO HA H N N 307 PRO HB2 H N N 308 PRO HB3 H N N 309 PRO HG2 H N N 310 PRO HG3 H N N 311 PRO HD2 H N N 312 PRO HD3 H N N 313 PRO HXT H N N 314 SER N N N N 315 SER CA C N S 316 SER C C N N 317 SER O O N N 318 SER CB C N N 319 SER OG O N N 320 SER OXT O N N 321 SER H H N N 322 SER H2 H N N 323 SER HA H N N 324 SER HB2 H N N 325 SER HB3 H N N 326 SER HG H N N 327 SER HXT H N N 328 THR N N N N 329 THR CA C N S 330 THR C C N N 331 THR O O N N 332 THR CB C N R 333 THR OG1 O N N 334 THR CG2 C N N 335 THR OXT O N N 336 THR H H N N 337 THR H2 H N N 338 THR HA H N N 339 THR HB H N N 340 THR HG1 H N N 341 THR HG21 H N N 342 THR HG22 H N N 343 THR HG23 H N N 344 THR HXT H N N 345 TRP N N N N 346 TRP CA C N S 347 TRP C C N N 348 TRP O O N N 349 TRP CB C N N 350 TRP CG C Y N 351 TRP CD1 C Y N 352 TRP CD2 C Y N 353 TRP NE1 N Y N 354 TRP CE2 C Y N 355 TRP CE3 C Y N 356 TRP CZ2 C Y N 357 TRP CZ3 C Y N 358 TRP CH2 C Y N 359 TRP OXT O N N 360 TRP H H N N 361 TRP H2 H N N 362 TRP HA H N N 363 TRP HB2 H N N 364 TRP HB3 H N N 365 TRP HD1 H N N 366 TRP HE1 H N N 367 TRP HE3 H N N 368 TRP HZ2 H N N 369 TRP HZ3 H N N 370 TRP HH2 H N N 371 TRP HXT H N N 372 TYR N N N N 373 TYR CA C N S 374 TYR C C N N 375 TYR O O N N 376 TYR CB C N N 377 TYR CG C Y N 378 TYR CD1 C Y N 379 TYR CD2 C Y N 380 TYR CE1 C Y N 381 TYR CE2 C Y N 382 TYR CZ C Y N 383 TYR OH O N N 384 TYR OXT O N N 385 TYR H H N N 386 TYR H2 H N N 387 TYR HA H N N 388 TYR HB2 H N N 389 TYR HB3 H N N 390 TYR HD1 H N N 391 TYR HD2 H N N 392 TYR HE1 H N N 393 TYR HE2 H N N 394 TYR HH H N N 395 TYR HXT H N N 396 VAL N N N N 397 VAL CA C N S 398 VAL C C N N 399 VAL O O N N 400 VAL CB C N N 401 VAL CG1 C N N 402 VAL CG2 C N N 403 VAL OXT O N N 404 VAL H H N N 405 VAL H2 H N N 406 VAL HA H N N 407 VAL HB H N N 408 VAL HG11 H N N 409 VAL HG12 H N N 410 VAL HG13 H N N 411 VAL HG21 H N N 412 VAL HG22 H N N 413 VAL HG23 H N N 414 VAL HXT H N N 415 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3SE O C3 doub N N 1 3SE C3 N sing N N 2 3SE C3 C2 sing N N 3 3SE C1 C2 sing N N 4 3SE C2 H2 sing N N 5 3SE C2 H2A sing N N 6 3SE C C1 sing N N 7 3SE C1 H1 sing N N 8 3SE C1 H1A sing N N 9 3SE F2 C sing N N 10 3SE F1 C sing N N 11 3SE C F sing N N 12 3SE C4 N sing N N 13 3SE N C8 sing N N 14 3SE C8 C7 sing N N 15 3SE C8 H8 sing N N 16 3SE C8 H8A sing N N 17 3SE C6 C7 sing N N 18 3SE C7 H7 sing N N 19 3SE C7 H7A sing N N 20 3SE C5 C6 sing N N 21 3SE C6 C9 sing N N 22 3SE C6 H6 sing N N 23 3SE C4 C5 sing N N 24 3SE C5 H5 sing N N 25 3SE C5 H5A sing N N 26 3SE C4 H4 sing N N 27 3SE C4 H4A sing N N 28 3SE N2 C9 doub Y N 29 3SE C9 O1 sing Y N 30 3SE N2 C10 sing Y N 31 3SE C11 C10 sing N N 32 3SE C10 N1 doub Y N 33 3SE O1 N1 sing Y N 34 3SE N3 C11 doub Y N 35 3SE C11 S sing Y N 36 3SE C13 S sing Y N 37 3SE C12 C13 doub Y N 38 3SE C13 H13 sing N N 39 3SE C12 N3 sing Y N 40 3SE C12 H12 sing N N 41 ALA N CA sing N N 42 ALA N H sing N N 43 ALA N H2 sing N N 44 ALA CA C sing N N 45 ALA CA CB sing N N 46 ALA CA HA sing N N 47 ALA C O doub N N 48 ALA C OXT sing N N 49 ALA CB HB1 sing N N 50 ALA CB HB2 sing N N 51 ALA CB HB3 sing N N 52 ALA OXT HXT sing N N 53 ARG N CA sing N N 54 ARG N H sing N N 55 ARG N H2 sing N N 56 ARG CA C sing N N 57 ARG CA CB sing N N 58 ARG CA HA sing N N 59 ARG C O doub N N 60 ARG C OXT sing N N 61 ARG CB CG sing N N 62 ARG CB HB2 sing N N 63 ARG CB HB3 sing N N 64 ARG CG CD sing N N 65 ARG CG HG2 sing N N 66 ARG CG HG3 sing N N 67 ARG CD NE sing N N 68 ARG CD HD2 sing N N 69 ARG CD HD3 sing N N 70 ARG NE CZ sing N N 71 ARG NE HE sing N N 72 ARG CZ NH1 sing N N 73 ARG CZ NH2 doub N N 74 ARG NH1 HH11 sing N N 75 ARG NH1 HH12 sing N N 76 ARG NH2 HH21 sing N N 77 ARG NH2 HH22 sing N N 78 ARG OXT HXT sing N N 79 ASN N CA sing N N 80 ASN N H sing N N 81 ASN N H2 sing N N 82 ASN CA C sing N N 83 ASN CA CB sing N N 84 ASN CA HA sing N N 85 ASN C O doub N N 86 ASN C OXT sing N N 87 ASN CB CG sing N N 88 ASN CB HB2 sing N N 89 ASN CB HB3 sing N N 90 ASN CG OD1 doub N N 91 ASN CG ND2 sing N N 92 ASN ND2 HD21 sing N N 93 ASN ND2 HD22 sing N N 94 ASN OXT HXT sing N N 95 ASP N CA sing N N 96 ASP N H sing N N 97 ASP N H2 sing N N 98 ASP CA C sing N N 99 ASP CA CB sing N N 100 ASP CA HA sing N N 101 ASP C O doub N N 102 ASP C OXT sing N N 103 ASP CB CG sing N N 104 ASP CB HB2 sing N N 105 ASP CB HB3 sing N N 106 ASP CG OD1 doub N N 107 ASP CG OD2 sing N N 108 ASP OD2 HD2 sing N N 109 ASP OXT HXT sing N N 110 GLN N CA sing N N 111 GLN N H sing N N 112 GLN N H2 sing N N 113 GLN CA C sing N N 114 GLN CA CB sing N N 115 GLN CA HA sing N N 116 GLN C O doub N N 117 GLN C OXT sing N N 118 GLN CB CG sing N N 119 GLN CB HB2 sing N N 120 GLN CB HB3 sing N N 121 GLN CG CD sing N N 122 GLN CG HG2 sing N N 123 GLN CG HG3 sing N N 124 GLN CD OE1 doub N N 125 GLN CD NE2 sing N N 126 GLN NE2 HE21 sing N N 127 GLN NE2 HE22 sing N N 128 GLN OXT HXT sing N N 129 GLU N CA sing N N 130 GLU N H sing N N 131 GLU N H2 sing N N 132 GLU CA C sing N N 133 GLU CA CB sing N N 134 GLU CA HA sing N N 135 GLU C O doub N N 136 GLU C OXT sing N N 137 GLU CB CG sing N N 138 GLU CB HB2 sing N N 139 GLU CB HB3 sing N N 140 GLU CG CD sing N N 141 GLU CG HG2 sing N N 142 GLU CG HG3 sing N N 143 GLU CD OE1 doub N N 144 GLU CD OE2 sing N N 145 GLU OE2 HE2 sing N N 146 GLU OXT HXT sing N N 147 GLY N CA sing N N 148 GLY N H sing N N 149 GLY N H2 sing N N 150 GLY CA C sing N N 151 GLY CA HA2 sing N N 152 GLY CA HA3 sing N N 153 GLY C O doub N N 154 GLY C OXT sing N N 155 GLY OXT HXT sing N N 156 HIS N CA sing N N 157 HIS N H sing N N 158 HIS N H2 sing N N 159 HIS CA C sing N N 160 HIS CA CB sing N N 161 HIS CA HA sing N N 162 HIS C O doub N N 163 HIS C OXT sing N N 164 HIS CB CG sing N N 165 HIS CB HB2 sing N N 166 HIS CB HB3 sing N N 167 HIS CG ND1 sing Y N 168 HIS CG CD2 doub Y N 169 HIS ND1 CE1 doub Y N 170 HIS ND1 HD1 sing N N 171 HIS CD2 NE2 sing Y N 172 HIS CD2 HD2 sing N N 173 HIS CE1 NE2 sing Y N 174 HIS CE1 HE1 sing N N 175 HIS NE2 HE2 sing N N 176 HIS OXT HXT sing N N 177 HOH O H1 sing N N 178 HOH O H2 sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _atom_sites.entry_id 3SDG _atom_sites.fract_transf_matrix[1][1] 0.008209 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008209 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029753 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_