data_3SO5 # _entry.id 3SO5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SO5 pdb_00003so5 10.2210/pdb3so5/pdb RCSB RCSB066443 ? ? WWPDB D_1000066443 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 421320 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3SO5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for Stem Cell Biology (STEMCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of an Immunoglobulin I-set domain of Lrig3 protein (Lrig3) from MUS MUSCULUS at 1.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for Stem Cell Biology (STEMCELL)' 2 ? # _cell.entry_id 3SO5 _cell.length_a 63.634 _cell.length_b 63.634 _cell.length_c 113.405 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SO5 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Leucine-rich repeats and immunoglobulin-like domains protein 3' 12723.782 2 ? ? 'Immunoglobulin I-set domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 water nat water 18.015 193 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LIG-3 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(DMG)GFVCDDFP(MLY)PQITVQPETQSAI(MLY)GSDVSFTCSAASSSDSP(MSE)TFAW(MLY)(MLY)DNEALQDA E(MSE)ENYAHLRAQGGEL(MSE)EYTTILRLRNVEFTSEG(MLY)YQCVISNHFGSSYSV(MLY)A(MLY)LTIN ; _entity_poly.pdbx_seq_one_letter_code_can ;XGFVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELMEYTTILRL RNVEFTSEGKYQCVISNHFGSSYSVKAKLTIN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 421320 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DMG n 1 2 GLY n 1 3 PHE n 1 4 VAL n 1 5 CYS n 1 6 ASP n 1 7 ASP n 1 8 PHE n 1 9 PRO n 1 10 MLY n 1 11 PRO n 1 12 GLN n 1 13 ILE n 1 14 THR n 1 15 VAL n 1 16 GLN n 1 17 PRO n 1 18 GLU n 1 19 THR n 1 20 GLN n 1 21 SER n 1 22 ALA n 1 23 ILE n 1 24 MLY n 1 25 GLY n 1 26 SER n 1 27 ASP n 1 28 VAL n 1 29 SER n 1 30 PHE n 1 31 THR n 1 32 CYS n 1 33 SER n 1 34 ALA n 1 35 ALA n 1 36 SER n 1 37 SER n 1 38 SER n 1 39 ASP n 1 40 SER n 1 41 PRO n 1 42 MSE n 1 43 THR n 1 44 PHE n 1 45 ALA n 1 46 TRP n 1 47 MLY n 1 48 MLY n 1 49 ASP n 1 50 ASN n 1 51 GLU n 1 52 ALA n 1 53 LEU n 1 54 GLN n 1 55 ASP n 1 56 ALA n 1 57 GLU n 1 58 MSE n 1 59 GLU n 1 60 ASN n 1 61 TYR n 1 62 ALA n 1 63 HIS n 1 64 LEU n 1 65 ARG n 1 66 ALA n 1 67 GLN n 1 68 GLY n 1 69 GLY n 1 70 GLU n 1 71 LEU n 1 72 MSE n 1 73 GLU n 1 74 TYR n 1 75 THR n 1 76 THR n 1 77 ILE n 1 78 LEU n 1 79 ARG n 1 80 LEU n 1 81 ARG n 1 82 ASN n 1 83 VAL n 1 84 GLU n 1 85 PHE n 1 86 THR n 1 87 SER n 1 88 GLU n 1 89 GLY n 1 90 MLY n 1 91 TYR n 1 92 GLN n 1 93 CYS n 1 94 VAL n 1 95 ILE n 1 96 SER n 1 97 ASN n 1 98 HIS n 1 99 PHE n 1 100 GLY n 1 101 SER n 1 102 SER n 1 103 TYR n 1 104 SER n 1 105 VAL n 1 106 MLY n 1 107 ALA n 1 108 MLY n 1 109 LEU n 1 110 THR n 1 111 ILE n 1 112 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC065142, Kiaa3016, Lrig3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LRIG3_MOUSE _struct_ref.pdbx_db_accession Q6P1C6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GFVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELMEYTTILRLR NVEFTSEGKYQCVISNHFGSSYSVKAKLTIN ; _struct_ref.pdbx_align_begin 490 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SO5 A 2 ? 112 ? Q6P1C6 490 ? 600 ? 490 600 2 1 3SO5 B 2 ? 112 ? Q6P1C6 490 ? 600 ? 490 600 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SO5 DMG A 1 ? UNP Q6P1C6 ? ? 'expression tag' 0 1 2 3SO5 DMG B 1 ? UNP Q6P1C6 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMG non-polymer . N,N-DIMETHYLGLYCINE DIMETHYLGLYCINE 'C4 H9 N O2' 103.120 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3SO5 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '2.5M sodium chloride, 0.2M lithium sulfate, 0.1M sodium acetate pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-04-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.9792 1.0 3 0.97892 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.9792,0.97892 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3SO5 _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 28.351 _reflns.number_all 26440 _reflns.number_obs 26440 _reflns.pdbx_netI_over_sigmaI 15.800 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.700 1.740 ? 13539 ? 0.636 1.2 0.636 ? 7.100 ? 1904 100.000 1 1 1.740 1.790 ? 13337 ? 0.533 1.5 0.533 ? 7.100 ? 1866 100.000 2 1 1.790 1.840 ? 12957 ? 0.434 1.8 0.434 ? 7.100 ? 1813 100.000 3 1 1.840 1.900 ? 12639 ? 0.323 2.4 0.323 ? 7.200 ? 1762 100.000 4 1 1.900 1.960 ? 12313 ? 0.240 3.2 0.240 ? 7.200 ? 1716 100.000 5 1 1.960 2.030 ? 12026 ? 0.194 4.0 0.194 ? 7.200 ? 1674 100.000 6 1 2.030 2.110 ? 11475 ? 0.155 5.0 0.155 ? 7.200 ? 1596 100.000 7 1 2.110 2.190 ? 11280 ? 0.132 5.6 0.132 ? 7.200 ? 1571 100.000 8 1 2.190 2.290 ? 10527 ? 0.126 5.7 0.126 ? 7.200 ? 1466 100.000 9 1 2.290 2.400 ? 10248 ? 0.121 5.9 0.121 ? 7.200 ? 1426 100.000 10 1 2.400 2.530 ? 9843 ? 0.113 6.3 0.113 ? 7.200 ? 1373 100.000 11 1 2.530 2.690 ? 9277 ? 0.095 7.3 0.095 ? 7.200 ? 1294 100.000 12 1 2.690 2.870 ? 8709 ? 0.077 8.9 0.077 ? 7.100 ? 1220 100.000 13 1 2.870 3.100 ? 8150 ? 0.064 10.2 0.064 ? 7.100 ? 1149 100.000 14 1 3.100 3.400 ? 7534 ? 0.050 13.1 0.050 ? 7.100 ? 1065 100.000 15 1 3.400 3.800 ? 6766 ? 0.038 17.1 0.038 ? 7.000 ? 969 100.000 16 1 3.800 4.390 ? 5981 ? 0.039 16.3 0.039 ? 6.900 ? 863 100.000 17 1 4.390 5.380 ? 5080 ? 0.034 18.3 0.034 ? 6.800 ? 750 100.000 18 1 5.380 7.600 ? 3925 ? 0.041 15.9 0.041 ? 6.500 ? 603 100.000 19 1 7.600 28.351 ? 2046 ? 0.036 17.2 0.036 ? 5.700 ? 360 97.900 20 1 # _refine.entry_id 3SO5 _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 28.351 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 26373 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. SULFATE (SO4) AND CHLORIDE (CL) FROM THE CRYSTALLIZATION AND THE PURIFICATION BUFFER RESPECTIVELY HAVE BEEN MODELED INTO THE STRUCTURE. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). 5. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD PHASES. 6.THE PROTEIN WAS SUBJECTED TO REDUCTIVE METHYLATION PRIOR TO CRYSTALLIZATION AND LYSINES HAVE BEEN MODELED AS N-DIMETHYL-LYSINE (MLY). 7. ELECTON DENSITY INDICATES THAT THE N-TERMINAL GLYCINE RESIDUE (GLY 0) ON SUBUNIT B IS DI-METHYLATED; THEREFORE, THIS RESIDUE WAS MODELED AS DIMETHYL GLYCINE (DMG). 8. DIFFERENCE ELECTRON DENSITY IN A CRYSTAL PACKING INTERFACE NEAR GLU 547 COULD NOT BE RELIABLY ASSIGNED AND WAS NOT MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2063 _refine.ls_R_factor_R_work 0.2058 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2162 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0700 _refine.ls_number_reflns_R_free 1337 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.6376 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.0379 _refine.aniso_B[2][2] 3.0379 _refine.aniso_B[3][3] -6.0758 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9347 _refine.correlation_coeff_Fo_to_Fc_free 0.9261 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 111.520 _refine.B_iso_min 13.420 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1679 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 193 _refine_hist.number_atoms_total 1886 _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 28.351 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 773 ? ? 6.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 50 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 273 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1789 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 1 ? ? 6.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 243 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2085 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1789 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2444 1.180 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.580 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.000 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7000 _refine_ls_shell.d_res_low 1.7700 _refine_ls_shell.pdbx_total_number_of_bins_used 13 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2785 _refine_ls_shell.R_factor_all 0.2431 _refine_ls_shell.R_factor_R_work 0.2415 _refine_ls_shell.R_factor_R_free 0.2758 _refine_ls_shell.percent_reflns_R_free 4.4900 _refine_ls_shell.number_reflns_R_free 131 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2916 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SO5 _struct.title 'Crystal structure of an Immunoglobulin I-set domain of Lrig3 protein (Lrig3) from MUS MUSCULUS at 1.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Immunoglobulin, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, SIGNALING PROTEIN, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.entry_id 3SO5 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 65 ? GLY A 69 ? ARG A 553 GLY A 557 5 ? 5 HELX_P HELX_P2 2 GLU A 84 ? GLU A 88 ? GLU A 572 GLU A 576 5 ? 5 HELX_P HELX_P3 3 ARG B 65 ? GLY B 69 ? ARG B 553 GLY B 557 5 ? 5 HELX_P HELX_P4 4 GLU B 84 ? GLU B 88 ? GLU B 572 GLU B 576 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 9 C ? ? ? 1_555 A MLY 10 N ? ? A PRO 497 A MLY 498 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale2 covale both ? A MLY 10 C ? ? ? 1_555 A PRO 11 N ? ? A MLY 498 A PRO 499 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A ILE 23 C ? ? ? 1_555 A MLY 24 N ? ? A ILE 511 A MLY 512 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale4 covale both ? A MLY 24 C ? ? ? 1_555 A GLY 25 N ? ? A MLY 512 A GLY 513 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A PRO 41 C ? ? ? 1_555 A MSE 42 N ? ? A PRO 529 A MSE 530 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale6 covale both ? A MSE 42 C ? ? ? 1_555 A THR 43 N ? ? A MSE 530 A THR 531 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale7 covale both ? A TRP 46 C ? ? ? 1_555 A MLY 47 N ? ? A TRP 534 A MLY 535 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MLY 47 C ? ? ? 1_555 A MLY 48 N ? ? A MLY 535 A MLY 536 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MLY 48 C ? ? ? 1_555 A ASP 49 N ? ? A MLY 536 A ASP 537 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale10 covale both ? A GLU 57 C ? ? ? 1_555 A MSE 58 N ? ? A GLU 545 A MSE 546 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A MSE 58 C ? ? ? 1_555 A GLU 59 N ? ? A MSE 546 A GLU 547 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A LEU 71 C ? ? ? 1_555 A MSE 72 N ? ? A LEU 559 A MSE 560 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale13 covale both ? A MSE 72 C ? ? ? 1_555 A GLU 73 N ? ? A MSE 560 A GLU 561 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale14 covale both ? A GLY 89 C ? ? ? 1_555 A MLY 90 N ? ? A GLY 577 A MLY 578 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale15 covale both ? A MLY 90 C ? ? ? 1_555 A TYR 91 N ? ? A MLY 578 A TYR 579 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale16 covale both ? A VAL 105 C ? ? ? 1_555 A MLY 106 N ? ? A VAL 593 A MLY 594 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale17 covale both ? A MLY 106 C ? ? ? 1_555 A ALA 107 N ? ? A MLY 594 A ALA 595 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale18 covale both ? A ALA 107 C ? ? ? 1_555 A MLY 108 N ? ? A ALA 595 A MLY 596 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale19 covale both ? A MLY 108 C ? ? ? 1_555 A LEU 109 N ? ? A MLY 596 A LEU 597 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale20 covale both ? B PRO 9 C ? ? ? 1_555 B MLY 10 N ? ? B PRO 497 B MLY 498 1_555 ? ? ? ? ? ? ? 1.359 ? ? covale21 covale both ? B MLY 10 C ? ? ? 1_555 B PRO 11 N ? ? B MLY 498 B PRO 499 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale22 covale both ? B ILE 23 C ? ? ? 1_555 B MLY 24 N ? ? B ILE 511 B MLY 512 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale23 covale both ? B MLY 24 C ? ? ? 1_555 B GLY 25 N ? ? B MLY 512 B GLY 513 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale24 covale both ? B PRO 41 C ? ? ? 1_555 B MSE 42 N ? ? B PRO 529 B MSE 530 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale25 covale both ? B MSE 42 C ? ? ? 1_555 B THR 43 N ? ? B MSE 530 B THR 531 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale26 covale both ? B TRP 46 C ? ? ? 1_555 B MLY 47 N ? ? B TRP 534 B MLY 535 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale27 covale both ? B MLY 47 C ? ? ? 1_555 B MLY 48 N ? ? B MLY 535 B MLY 536 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale28 covale both ? B MLY 48 C ? ? ? 1_555 B ASP 49 N ? ? B MLY 536 B ASP 537 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale29 covale both ? B GLU 57 C ? ? ? 1_555 B MSE 58 N ? ? B GLU 545 B MSE 546 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale30 covale both ? B MSE 58 C ? ? ? 1_555 B GLU 59 N ? ? B MSE 546 B GLU 547 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale31 covale both ? B LEU 71 C ? ? ? 1_555 B MSE 72 N ? ? B LEU 559 B MSE 560 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale32 covale both ? B MSE 72 C ? ? ? 1_555 B GLU 73 N ? ? B MSE 560 B GLU 561 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale33 covale both ? B GLY 89 C ? ? ? 1_555 B MLY 90 N ? ? B GLY 577 B MLY 578 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale34 covale both ? B MLY 90 C ? ? ? 1_555 B TYR 91 N ? ? B MLY 578 B TYR 579 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale35 covale both ? B VAL 105 C ? ? ? 1_555 B MLY 106 N ? ? B VAL 593 B MLY 594 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale36 covale both ? B MLY 106 C ? ? ? 1_555 B ALA 107 N ? ? B MLY 594 B ALA 595 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale37 covale both ? B ALA 107 C ? ? ? 1_555 B MLY 108 N ? ? B ALA 595 B MLY 596 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale38 covale both ? B MLY 108 C ? ? ? 1_555 B LEU 109 N ? ? B MLY 596 B LEU 597 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 4 ? D ? 4 ? E ? 5 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 12 ? VAL A 15 ? GLN A 500 VAL A 503 A 2 VAL A 28 ? SER A 36 ? VAL A 516 SER A 524 A 3 MSE A 72 ? LEU A 80 ? MSE A 560 LEU A 568 A 4 GLU A 57 ? HIS A 63 ? GLU A 545 HIS A 551 B 1 GLN A 20 ? ILE A 23 ? GLN A 508 ILE A 511 B 2 ALA A 107 ? ASN A 112 ? ALA A 595 ASN A 600 B 3 GLY A 89 ? ASN A 97 ? GLY A 577 ASN A 585 B 4 THR A 43 ? MLY A 48 ? THR A 531 MLY A 536 B 5 GLU A 51 ? ALA A 52 ? GLU A 539 ALA A 540 C 1 GLN A 20 ? ILE A 23 ? GLN A 508 ILE A 511 C 2 ALA A 107 ? ASN A 112 ? ALA A 595 ASN A 600 C 3 GLY A 89 ? ASN A 97 ? GLY A 577 ASN A 585 C 4 GLY A 100 ? TYR A 103 ? GLY A 588 TYR A 591 D 1 GLN B 12 ? VAL B 15 ? GLN B 500 VAL B 503 D 2 VAL B 28 ? SER B 36 ? VAL B 516 SER B 524 D 3 MSE B 72 ? LEU B 80 ? MSE B 560 LEU B 568 D 4 GLU B 57 ? HIS B 63 ? GLU B 545 HIS B 551 E 1 GLN B 20 ? ILE B 23 ? GLN B 508 ILE B 511 E 2 ALA B 107 ? ASN B 112 ? ALA B 595 ASN B 600 E 3 GLY B 89 ? ASN B 97 ? GLY B 577 ASN B 585 E 4 THR B 43 ? MLY B 48 ? THR B 531 MLY B 536 E 5 GLU B 51 ? ALA B 52 ? GLU B 539 ALA B 540 F 1 GLN B 20 ? ILE B 23 ? GLN B 508 ILE B 511 F 2 ALA B 107 ? ASN B 112 ? ALA B 595 ASN B 600 F 3 GLY B 89 ? ASN B 97 ? GLY B 577 ASN B 585 F 4 GLY B 100 ? TYR B 103 ? GLY B 588 TYR B 591 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 14 ? N THR A 502 O SER A 33 ? O SER A 521 A 2 3 N VAL A 28 ? N VAL A 516 O LEU A 80 ? O LEU A 568 A 3 4 O GLU A 73 ? O GLU A 561 N HIS A 63 ? N HIS A 551 B 1 2 N GLN A 20 ? N GLN A 508 O MLY A 108 ? O MLY A 596 B 2 3 O ALA A 107 ? O ALA A 595 N TYR A 91 ? N TYR A 579 B 3 4 O VAL A 94 ? O VAL A 582 N ALA A 45 ? N ALA A 533 B 4 5 N MLY A 48 ? N MLY A 536 O GLU A 51 ? O GLU A 539 C 1 2 N GLN A 20 ? N GLN A 508 O MLY A 108 ? O MLY A 596 C 2 3 O ALA A 107 ? O ALA A 595 N TYR A 91 ? N TYR A 579 C 3 4 N ILE A 95 ? N ILE A 583 O SER A 102 ? O SER A 590 D 1 2 N GLN B 12 ? N GLN B 500 O ALA B 35 ? O ALA B 523 D 2 3 N VAL B 28 ? N VAL B 516 O LEU B 80 ? O LEU B 568 D 3 4 O GLU B 73 ? O GLU B 561 N HIS B 63 ? N HIS B 551 E 1 2 N GLN B 20 ? N GLN B 508 O MLY B 108 ? O MLY B 596 E 2 3 O ALA B 107 ? O ALA B 595 N TYR B 91 ? N TYR B 579 E 3 4 O VAL B 94 ? O VAL B 582 N ALA B 45 ? N ALA B 533 E 4 5 N MLY B 48 ? N MLY B 536 O GLU B 51 ? O GLU B 539 F 1 2 N GLN B 20 ? N GLN B 508 O MLY B 108 ? O MLY B 596 F 2 3 O ALA B 107 ? O ALA B 595 N TYR B 91 ? N TYR B 579 F 3 4 N ILE B 95 ? N ILE B 583 O SER B 102 ? O SER B 590 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 2002 ? 8 'BINDING SITE FOR RESIDUE SO4 A 2002' AC2 Software A CL 2003 ? 5 'BINDING SITE FOR RESIDUE CL A 2003' AC3 Software A CL 2005 ? 2 'BINDING SITE FOR RESIDUE CL A 2005' AC4 Software A CL 2006 ? 3 'BINDING SITE FOR RESIDUE CL A 2006' AC5 Software B SO4 2001 ? 3 'BINDING SITE FOR RESIDUE SO4 B 2001' AC6 Software B CL 2004 ? 3 'BINDING SITE FOR RESIDUE CL B 2004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASN A 60 ? ASN A 548 . ? 1_555 ? 2 AC1 8 ALA A 62 ? ALA A 550 . ? 1_555 ? 3 AC1 8 HOH I . ? HOH A 2192 . ? 1_555 ? 4 AC1 8 PHE B 44 ? PHE B 532 . ? 6_455 ? 5 AC1 8 ASN B 60 ? ASN B 548 . ? 6_455 ? 6 AC1 8 TYR B 61 ? TYR B 549 . ? 6_455 ? 7 AC1 8 ALA B 62 ? ALA B 550 . ? 6_455 ? 8 AC1 8 HOH J . ? HOH B 2081 . ? 6_455 ? 9 AC2 5 PRO A 17 ? PRO A 505 . ? 1_555 ? 10 AC2 5 GLU A 18 ? GLU A 506 . ? 1_555 ? 11 AC2 5 PHE A 30 ? PHE A 518 . ? 1_555 ? 12 AC2 5 THR A 31 ? THR A 519 . ? 1_555 ? 13 AC2 5 HOH I . ? HOH A 2037 . ? 1_555 ? 14 AC3 2 ASP A 49 ? ASP A 537 . ? 1_555 ? 15 AC3 2 MLY A 106 ? MLY A 594 . ? 1_555 ? 16 AC4 3 MLY A 10 ? MLY A 498 . ? 1_555 ? 17 AC4 3 ILE A 13 ? ILE A 501 . ? 7_555 ? 18 AC4 3 HOH I . ? HOH A 2082 . ? 7_555 ? 19 AC5 3 GLN A 67 ? GLN A 555 . ? 6_555 ? 20 AC5 3 ARG B 79 ? ARG B 567 . ? 1_555 ? 21 AC5 3 ARG B 81 ? ARG B 569 . ? 1_555 ? 22 AC6 3 GLU B 18 ? GLU B 506 . ? 1_555 ? 23 AC6 3 GLN B 20 ? GLN B 508 . ? 1_555 ? 24 AC6 3 THR B 31 ? THR B 519 . ? 1_555 ? # _atom_sites.entry_id 3SO5 _atom_sites.fract_transf_matrix[1][1] 0.015715 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015715 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008818 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DMG 1 0 ? ? ? A . n A 1 2 GLY 2 490 ? ? ? A . n A 1 3 PHE 3 491 ? ? ? A . n A 1 4 VAL 4 492 ? ? ? A . n A 1 5 CYS 5 493 ? ? ? A . n A 1 6 ASP 6 494 ? ? ? A . n A 1 7 ASP 7 495 ? ? ? A . n A 1 8 PHE 8 496 496 PHE PHE A . n A 1 9 PRO 9 497 497 PRO PRO A . n A 1 10 MLY 10 498 498 MLY MLY A . n A 1 11 PRO 11 499 499 PRO PRO A . n A 1 12 GLN 12 500 500 GLN GLN A . n A 1 13 ILE 13 501 501 ILE ILE A . n A 1 14 THR 14 502 502 THR THR A . n A 1 15 VAL 15 503 503 VAL VAL A . n A 1 16 GLN 16 504 504 GLN GLN A . n A 1 17 PRO 17 505 505 PRO PRO A . n A 1 18 GLU 18 506 506 GLU GLU A . n A 1 19 THR 19 507 507 THR THR A . n A 1 20 GLN 20 508 508 GLN GLN A . n A 1 21 SER 21 509 509 SER SER A . n A 1 22 ALA 22 510 510 ALA ALA A . n A 1 23 ILE 23 511 511 ILE ILE A . n A 1 24 MLY 24 512 512 MLY MLY A . n A 1 25 GLY 25 513 513 GLY GLY A . n A 1 26 SER 26 514 514 SER SER A . n A 1 27 ASP 27 515 515 ASP ASP A . n A 1 28 VAL 28 516 516 VAL VAL A . n A 1 29 SER 29 517 517 SER SER A . n A 1 30 PHE 30 518 518 PHE PHE A . n A 1 31 THR 31 519 519 THR THR A . n A 1 32 CYS 32 520 520 CYS CYS A . n A 1 33 SER 33 521 521 SER SER A . n A 1 34 ALA 34 522 522 ALA ALA A . n A 1 35 ALA 35 523 523 ALA ALA A . n A 1 36 SER 36 524 524 SER SER A . n A 1 37 SER 37 525 525 SER SER A . n A 1 38 SER 38 526 526 SER SER A . n A 1 39 ASP 39 527 527 ASP ASP A . n A 1 40 SER 40 528 528 SER SER A . n A 1 41 PRO 41 529 529 PRO PRO A . n A 1 42 MSE 42 530 530 MSE MSE A . n A 1 43 THR 43 531 531 THR THR A . n A 1 44 PHE 44 532 532 PHE PHE A . n A 1 45 ALA 45 533 533 ALA ALA A . n A 1 46 TRP 46 534 534 TRP TRP A . n A 1 47 MLY 47 535 535 MLY MLY A . n A 1 48 MLY 48 536 536 MLY MLY A . n A 1 49 ASP 49 537 537 ASP ASP A . n A 1 50 ASN 50 538 538 ASN ASN A . n A 1 51 GLU 51 539 539 GLU GLU A . n A 1 52 ALA 52 540 540 ALA ALA A . n A 1 53 LEU 53 541 541 LEU LEU A . n A 1 54 GLN 54 542 542 GLN GLN A . n A 1 55 ASP 55 543 543 ASP ASP A . n A 1 56 ALA 56 544 544 ALA ALA A . n A 1 57 GLU 57 545 545 GLU GLU A . n A 1 58 MSE 58 546 546 MSE MSE A . n A 1 59 GLU 59 547 547 GLU GLU A . n A 1 60 ASN 60 548 548 ASN ASN A . n A 1 61 TYR 61 549 549 TYR TYR A . n A 1 62 ALA 62 550 550 ALA ALA A . n A 1 63 HIS 63 551 551 HIS HIS A . n A 1 64 LEU 64 552 552 LEU LEU A . n A 1 65 ARG 65 553 553 ARG ARG A . n A 1 66 ALA 66 554 554 ALA ALA A . n A 1 67 GLN 67 555 555 GLN GLN A . n A 1 68 GLY 68 556 556 GLY GLY A . n A 1 69 GLY 69 557 557 GLY GLY A . n A 1 70 GLU 70 558 558 GLU GLU A . n A 1 71 LEU 71 559 559 LEU LEU A . n A 1 72 MSE 72 560 560 MSE MSE A . n A 1 73 GLU 73 561 561 GLU GLU A . n A 1 74 TYR 74 562 562 TYR TYR A . n A 1 75 THR 75 563 563 THR THR A . n A 1 76 THR 76 564 564 THR THR A . n A 1 77 ILE 77 565 565 ILE ILE A . n A 1 78 LEU 78 566 566 LEU LEU A . n A 1 79 ARG 79 567 567 ARG ARG A . n A 1 80 LEU 80 568 568 LEU LEU A . n A 1 81 ARG 81 569 569 ARG ARG A . n A 1 82 ASN 82 570 570 ASN ASN A . n A 1 83 VAL 83 571 571 VAL VAL A . n A 1 84 GLU 84 572 572 GLU GLU A . n A 1 85 PHE 85 573 573 PHE PHE A . n A 1 86 THR 86 574 574 THR THR A . n A 1 87 SER 87 575 575 SER SER A . n A 1 88 GLU 88 576 576 GLU GLU A . n A 1 89 GLY 89 577 577 GLY GLY A . n A 1 90 MLY 90 578 578 MLY MLY A . n A 1 91 TYR 91 579 579 TYR TYR A . n A 1 92 GLN 92 580 580 GLN GLN A . n A 1 93 CYS 93 581 581 CYS CYS A . n A 1 94 VAL 94 582 582 VAL VAL A . n A 1 95 ILE 95 583 583 ILE ILE A . n A 1 96 SER 96 584 584 SER SER A . n A 1 97 ASN 97 585 585 ASN ASN A . n A 1 98 HIS 98 586 586 HIS HIS A . n A 1 99 PHE 99 587 587 PHE PHE A . n A 1 100 GLY 100 588 588 GLY GLY A . n A 1 101 SER 101 589 589 SER SER A . n A 1 102 SER 102 590 590 SER SER A . n A 1 103 TYR 103 591 591 TYR TYR A . n A 1 104 SER 104 592 592 SER SER A . n A 1 105 VAL 105 593 593 VAL VAL A . n A 1 106 MLY 106 594 594 MLY MLY A . n A 1 107 ALA 107 595 595 ALA ALA A . n A 1 108 MLY 108 596 596 MLY MLY A . n A 1 109 LEU 109 597 597 LEU LEU A . n A 1 110 THR 110 598 598 THR THR A . n A 1 111 ILE 111 599 599 ILE ILE A . n A 1 112 ASN 112 600 600 ASN ASN A . n B 1 1 DMG 1 0 0 DMG DMG B . n B 1 2 GLY 2 490 490 GLY GLY B . n B 1 3 PHE 3 491 491 PHE PHE B . n B 1 4 VAL 4 492 492 VAL VAL B . n B 1 5 CYS 5 493 493 CYS CYS B . n B 1 6 ASP 6 494 494 ASP ASP B . n B 1 7 ASP 7 495 495 ASP ASP B . n B 1 8 PHE 8 496 496 PHE PHE B . n B 1 9 PRO 9 497 497 PRO PRO B . n B 1 10 MLY 10 498 498 MLY MLY B . n B 1 11 PRO 11 499 499 PRO PRO B . n B 1 12 GLN 12 500 500 GLN GLN B . n B 1 13 ILE 13 501 501 ILE ILE B . n B 1 14 THR 14 502 502 THR THR B . n B 1 15 VAL 15 503 503 VAL VAL B . n B 1 16 GLN 16 504 504 GLN GLN B . n B 1 17 PRO 17 505 505 PRO PRO B . n B 1 18 GLU 18 506 506 GLU GLU B . n B 1 19 THR 19 507 507 THR THR B . n B 1 20 GLN 20 508 508 GLN GLN B . n B 1 21 SER 21 509 509 SER SER B . n B 1 22 ALA 22 510 510 ALA ALA B . n B 1 23 ILE 23 511 511 ILE ILE B . n B 1 24 MLY 24 512 512 MLY MLY B . n B 1 25 GLY 25 513 513 GLY GLY B . n B 1 26 SER 26 514 514 SER SER B . n B 1 27 ASP 27 515 515 ASP ASP B . n B 1 28 VAL 28 516 516 VAL VAL B . n B 1 29 SER 29 517 517 SER SER B . n B 1 30 PHE 30 518 518 PHE PHE B . n B 1 31 THR 31 519 519 THR THR B . n B 1 32 CYS 32 520 520 CYS CYS B . n B 1 33 SER 33 521 521 SER SER B . n B 1 34 ALA 34 522 522 ALA ALA B . n B 1 35 ALA 35 523 523 ALA ALA B . n B 1 36 SER 36 524 524 SER SER B . n B 1 37 SER 37 525 525 SER SER B . n B 1 38 SER 38 526 526 SER SER B . n B 1 39 ASP 39 527 527 ASP ASP B . n B 1 40 SER 40 528 528 SER SER B . n B 1 41 PRO 41 529 529 PRO PRO B . n B 1 42 MSE 42 530 530 MSE MSE B . n B 1 43 THR 43 531 531 THR THR B . n B 1 44 PHE 44 532 532 PHE PHE B . n B 1 45 ALA 45 533 533 ALA ALA B . n B 1 46 TRP 46 534 534 TRP TRP B . n B 1 47 MLY 47 535 535 MLY MLY B . n B 1 48 MLY 48 536 536 MLY MLY B . n B 1 49 ASP 49 537 537 ASP ASP B . n B 1 50 ASN 50 538 538 ASN ASN B . n B 1 51 GLU 51 539 539 GLU GLU B . n B 1 52 ALA 52 540 540 ALA ALA B . n B 1 53 LEU 53 541 541 LEU LEU B . n B 1 54 GLN 54 542 542 GLN GLN B . n B 1 55 ASP 55 543 543 ASP ASP B . n B 1 56 ALA 56 544 544 ALA ALA B . n B 1 57 GLU 57 545 545 GLU GLU B . n B 1 58 MSE 58 546 546 MSE MSE B . n B 1 59 GLU 59 547 547 GLU GLU B . n B 1 60 ASN 60 548 548 ASN ASN B . n B 1 61 TYR 61 549 549 TYR TYR B . n B 1 62 ALA 62 550 550 ALA ALA B . n B 1 63 HIS 63 551 551 HIS HIS B . n B 1 64 LEU 64 552 552 LEU LEU B . n B 1 65 ARG 65 553 553 ARG ARG B . n B 1 66 ALA 66 554 554 ALA ALA B . n B 1 67 GLN 67 555 555 GLN GLN B . n B 1 68 GLY 68 556 556 GLY GLY B . n B 1 69 GLY 69 557 557 GLY GLY B . n B 1 70 GLU 70 558 558 GLU GLU B . n B 1 71 LEU 71 559 559 LEU LEU B . n B 1 72 MSE 72 560 560 MSE MSE B . n B 1 73 GLU 73 561 561 GLU GLU B . n B 1 74 TYR 74 562 562 TYR TYR B . n B 1 75 THR 75 563 563 THR THR B . n B 1 76 THR 76 564 564 THR THR B . n B 1 77 ILE 77 565 565 ILE ILE B . n B 1 78 LEU 78 566 566 LEU LEU B . n B 1 79 ARG 79 567 567 ARG ARG B . n B 1 80 LEU 80 568 568 LEU LEU B . n B 1 81 ARG 81 569 569 ARG ARG B . n B 1 82 ASN 82 570 570 ASN ASN B . n B 1 83 VAL 83 571 571 VAL VAL B . n B 1 84 GLU 84 572 572 GLU GLU B . n B 1 85 PHE 85 573 573 PHE PHE B . n B 1 86 THR 86 574 574 THR THR B . n B 1 87 SER 87 575 575 SER SER B . n B 1 88 GLU 88 576 576 GLU GLU B . n B 1 89 GLY 89 577 577 GLY GLY B . n B 1 90 MLY 90 578 578 MLY MLY B . n B 1 91 TYR 91 579 579 TYR TYR B . n B 1 92 GLN 92 580 580 GLN GLN B . n B 1 93 CYS 93 581 581 CYS CYS B . n B 1 94 VAL 94 582 582 VAL VAL B . n B 1 95 ILE 95 583 583 ILE ILE B . n B 1 96 SER 96 584 584 SER SER B . n B 1 97 ASN 97 585 585 ASN ASN B . n B 1 98 HIS 98 586 586 HIS HIS B . n B 1 99 PHE 99 587 587 PHE PHE B . n B 1 100 GLY 100 588 588 GLY GLY B . n B 1 101 SER 101 589 589 SER SER B . n B 1 102 SER 102 590 590 SER SER B . n B 1 103 TYR 103 591 591 TYR TYR B . n B 1 104 SER 104 592 592 SER SER B . n B 1 105 VAL 105 593 593 VAL VAL B . n B 1 106 MLY 106 594 594 MLY MLY B . n B 1 107 ALA 107 595 595 ALA ALA B . n B 1 108 MLY 108 596 596 MLY MLY B . n B 1 109 LEU 109 597 597 LEU LEU B . n B 1 110 THR 110 598 598 THR THR B . n B 1 111 ILE 111 599 599 ILE ILE B . n B 1 112 ASN 112 600 600 ASN ASN B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 2002 2002 SO4 SO4 A . D 3 CL 1 2003 2003 CL CL A . E 3 CL 1 2005 2005 CL CL A . F 3 CL 1 2006 2006 CL CL A . G 2 SO4 1 2001 2001 SO4 SO4 B . H 3 CL 1 2004 2004 CL CL B . I 4 HOH 1 2008 2008 HOH HOH A . I 4 HOH 2 2009 2009 HOH HOH A . I 4 HOH 3 2010 2010 HOH HOH A . I 4 HOH 4 2011 2011 HOH HOH A . I 4 HOH 5 2012 2012 HOH HOH A . I 4 HOH 6 2013 2013 HOH HOH A . I 4 HOH 7 2014 2014 HOH HOH A . I 4 HOH 8 2015 2015 HOH HOH A . I 4 HOH 9 2016 2016 HOH HOH A . I 4 HOH 10 2017 2017 HOH HOH A . I 4 HOH 11 2018 2018 HOH HOH A . I 4 HOH 12 2019 2019 HOH HOH A . I 4 HOH 13 2020 2020 HOH HOH A . I 4 HOH 14 2021 2021 HOH HOH A . I 4 HOH 15 2022 2022 HOH HOH A . I 4 HOH 16 2023 2023 HOH HOH A . I 4 HOH 17 2024 2024 HOH HOH A . I 4 HOH 18 2025 2025 HOH HOH A . I 4 HOH 19 2026 2026 HOH HOH A . I 4 HOH 20 2027 2027 HOH HOH A . I 4 HOH 21 2028 2028 HOH HOH A . I 4 HOH 22 2030 2030 HOH HOH A . I 4 HOH 23 2035 2035 HOH HOH A . I 4 HOH 24 2037 2037 HOH HOH A . I 4 HOH 25 2038 2038 HOH HOH A . I 4 HOH 26 2039 2039 HOH HOH A . I 4 HOH 27 2040 2040 HOH HOH A . I 4 HOH 28 2041 2041 HOH HOH A . I 4 HOH 29 2042 2042 HOH HOH A . I 4 HOH 30 2043 2043 HOH HOH A . I 4 HOH 31 2044 2044 HOH HOH A . I 4 HOH 32 2045 2045 HOH HOH A . I 4 HOH 33 2046 2046 HOH HOH A . I 4 HOH 34 2047 2047 HOH HOH A . I 4 HOH 35 2048 2048 HOH HOH A . I 4 HOH 36 2049 2049 HOH HOH A . I 4 HOH 37 2050 2050 HOH HOH A . I 4 HOH 38 2051 2051 HOH HOH A . I 4 HOH 39 2052 2052 HOH HOH A . I 4 HOH 40 2053 2053 HOH HOH A . I 4 HOH 41 2054 2054 HOH HOH A . I 4 HOH 42 2056 2056 HOH HOH A . I 4 HOH 43 2057 2057 HOH HOH A . I 4 HOH 44 2058 2058 HOH HOH A . I 4 HOH 45 2059 2059 HOH HOH A . I 4 HOH 46 2060 2060 HOH HOH A . I 4 HOH 47 2061 2061 HOH HOH A . I 4 HOH 48 2062 2062 HOH HOH A . I 4 HOH 49 2063 2063 HOH HOH A . I 4 HOH 50 2064 2064 HOH HOH A . I 4 HOH 51 2065 2065 HOH HOH A . I 4 HOH 52 2082 2082 HOH HOH A . I 4 HOH 53 2084 2084 HOH HOH A . I 4 HOH 54 2085 2085 HOH HOH A . I 4 HOH 55 2086 2086 HOH HOH A . I 4 HOH 56 2087 2087 HOH HOH A . I 4 HOH 57 2088 2088 HOH HOH A . I 4 HOH 58 2089 2089 HOH HOH A . I 4 HOH 59 2090 2090 HOH HOH A . I 4 HOH 60 2091 2091 HOH HOH A . I 4 HOH 61 2092 2092 HOH HOH A . I 4 HOH 62 2093 2093 HOH HOH A . I 4 HOH 63 2094 2094 HOH HOH A . I 4 HOH 64 2095 2095 HOH HOH A . I 4 HOH 65 2096 2096 HOH HOH A . I 4 HOH 66 2097 2097 HOH HOH A . I 4 HOH 67 2098 2098 HOH HOH A . I 4 HOH 68 2099 2099 HOH HOH A . I 4 HOH 69 2100 2100 HOH HOH A . I 4 HOH 70 2101 2101 HOH HOH A . I 4 HOH 71 2102 2102 HOH HOH A . I 4 HOH 72 2103 2103 HOH HOH A . I 4 HOH 73 2104 2104 HOH HOH A . I 4 HOH 74 2125 2125 HOH HOH A . I 4 HOH 75 2126 2126 HOH HOH A . I 4 HOH 76 2127 2127 HOH HOH A . I 4 HOH 77 2128 2128 HOH HOH A . I 4 HOH 78 2131 2131 HOH HOH A . I 4 HOH 79 2132 2132 HOH HOH A . I 4 HOH 80 2134 2134 HOH HOH A . I 4 HOH 81 2136 2136 HOH HOH A . I 4 HOH 82 2137 2137 HOH HOH A . I 4 HOH 83 2138 2138 HOH HOH A . I 4 HOH 84 2139 2139 HOH HOH A . I 4 HOH 85 2151 2151 HOH HOH A . I 4 HOH 86 2152 2152 HOH HOH A . I 4 HOH 87 2153 2153 HOH HOH A . I 4 HOH 88 2155 2155 HOH HOH A . I 4 HOH 89 2156 2156 HOH HOH A . I 4 HOH 90 2159 2159 HOH HOH A . I 4 HOH 91 2163 2163 HOH HOH A . I 4 HOH 92 2164 2164 HOH HOH A . I 4 HOH 93 2165 2165 HOH HOH A . I 4 HOH 94 2166 2166 HOH HOH A . I 4 HOH 95 2167 2167 HOH HOH A . I 4 HOH 96 2168 2168 HOH HOH A . I 4 HOH 97 2169 2169 HOH HOH A . I 4 HOH 98 2178 2178 HOH HOH A . I 4 HOH 99 2179 2179 HOH HOH A . I 4 HOH 100 2180 2180 HOH HOH A . I 4 HOH 101 2181 2181 HOH HOH A . I 4 HOH 102 2182 2182 HOH HOH A . I 4 HOH 103 2185 2185 HOH HOH A . I 4 HOH 104 2186 2186 HOH HOH A . I 4 HOH 105 2187 2187 HOH HOH A . I 4 HOH 106 2189 2189 HOH HOH A . I 4 HOH 107 2190 2190 HOH HOH A . I 4 HOH 108 2192 2192 HOH HOH A . I 4 HOH 109 2194 2194 HOH HOH A . I 4 HOH 110 2195 2195 HOH HOH A . I 4 HOH 111 2198 2198 HOH HOH A . J 4 HOH 1 2007 2007 HOH HOH B . J 4 HOH 2 2029 2029 HOH HOH B . J 4 HOH 3 2031 2031 HOH HOH B . J 4 HOH 4 2032 2032 HOH HOH B . J 4 HOH 5 2033 2033 HOH HOH B . J 4 HOH 6 2034 2034 HOH HOH B . J 4 HOH 7 2036 2036 HOH HOH B . J 4 HOH 8 2055 2055 HOH HOH B . J 4 HOH 9 2066 2066 HOH HOH B . J 4 HOH 10 2067 2067 HOH HOH B . J 4 HOH 11 2068 2068 HOH HOH B . J 4 HOH 12 2069 2069 HOH HOH B . J 4 HOH 13 2070 2070 HOH HOH B . J 4 HOH 14 2071 2071 HOH HOH B . J 4 HOH 15 2072 2072 HOH HOH B . J 4 HOH 16 2073 2073 HOH HOH B . J 4 HOH 17 2074 2074 HOH HOH B . J 4 HOH 18 2075 2075 HOH HOH B . J 4 HOH 19 2076 2076 HOH HOH B . J 4 HOH 20 2077 2077 HOH HOH B . J 4 HOH 21 2078 2078 HOH HOH B . J 4 HOH 22 2079 2079 HOH HOH B . J 4 HOH 23 2080 2080 HOH HOH B . J 4 HOH 24 2081 2081 HOH HOH B . J 4 HOH 25 2083 2083 HOH HOH B . J 4 HOH 26 2105 2105 HOH HOH B . J 4 HOH 27 2106 2106 HOH HOH B . J 4 HOH 28 2107 2107 HOH HOH B . J 4 HOH 29 2108 2108 HOH HOH B . J 4 HOH 30 2109 2109 HOH HOH B . J 4 HOH 31 2110 2110 HOH HOH B . J 4 HOH 32 2111 2111 HOH HOH B . J 4 HOH 33 2112 2112 HOH HOH B . J 4 HOH 34 2113 2113 HOH HOH B . J 4 HOH 35 2114 2114 HOH HOH B . J 4 HOH 36 2115 2115 HOH HOH B . J 4 HOH 37 2116 2116 HOH HOH B . J 4 HOH 38 2117 2117 HOH HOH B . J 4 HOH 39 2118 2118 HOH HOH B . J 4 HOH 40 2119 2119 HOH HOH B . J 4 HOH 41 2120 2120 HOH HOH B . J 4 HOH 42 2121 2121 HOH HOH B . J 4 HOH 43 2122 2122 HOH HOH B . J 4 HOH 44 2123 2123 HOH HOH B . J 4 HOH 45 2124 2124 HOH HOH B . J 4 HOH 46 2129 2129 HOH HOH B . J 4 HOH 47 2130 2130 HOH HOH B . J 4 HOH 48 2133 2133 HOH HOH B . J 4 HOH 49 2135 2135 HOH HOH B . J 4 HOH 50 2140 2140 HOH HOH B . J 4 HOH 51 2141 2141 HOH HOH B . J 4 HOH 52 2142 2142 HOH HOH B . J 4 HOH 53 2143 2143 HOH HOH B . J 4 HOH 54 2144 2144 HOH HOH B . J 4 HOH 55 2145 2145 HOH HOH B . J 4 HOH 56 2146 2146 HOH HOH B . J 4 HOH 57 2147 2147 HOH HOH B . J 4 HOH 58 2148 2148 HOH HOH B . J 4 HOH 59 2149 2149 HOH HOH B . J 4 HOH 60 2150 2150 HOH HOH B . J 4 HOH 61 2154 2154 HOH HOH B . J 4 HOH 62 2157 2157 HOH HOH B . J 4 HOH 63 2158 2158 HOH HOH B . J 4 HOH 64 2160 2160 HOH HOH B . J 4 HOH 65 2161 2161 HOH HOH B . J 4 HOH 66 2162 2162 HOH HOH B . J 4 HOH 67 2170 2170 HOH HOH B . J 4 HOH 68 2171 2171 HOH HOH B . J 4 HOH 69 2172 2172 HOH HOH B . J 4 HOH 70 2173 2173 HOH HOH B . J 4 HOH 71 2174 2174 HOH HOH B . J 4 HOH 72 2175 2175 HOH HOH B . J 4 HOH 73 2176 2176 HOH HOH B . J 4 HOH 74 2177 2177 HOH HOH B . J 4 HOH 75 2183 2183 HOH HOH B . J 4 HOH 76 2184 2184 HOH HOH B . J 4 HOH 77 2188 2188 HOH HOH B . J 4 HOH 78 2191 2191 HOH HOH B . J 4 HOH 79 2193 2193 HOH HOH B . J 4 HOH 80 2196 2196 HOH HOH B . J 4 HOH 81 2197 2197 HOH HOH B . J 4 HOH 82 2199 2199 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 10 A MLY 498 ? LYS N-DIMETHYL-LYSINE 2 A MLY 24 A MLY 512 ? LYS N-DIMETHYL-LYSINE 3 A MSE 42 A MSE 530 ? MET SELENOMETHIONINE 4 A MLY 47 A MLY 535 ? LYS N-DIMETHYL-LYSINE 5 A MLY 48 A MLY 536 ? LYS N-DIMETHYL-LYSINE 6 A MSE 58 A MSE 546 ? MET SELENOMETHIONINE 7 A MSE 72 A MSE 560 ? MET SELENOMETHIONINE 8 A MLY 90 A MLY 578 ? LYS N-DIMETHYL-LYSINE 9 A MLY 106 A MLY 594 ? LYS N-DIMETHYL-LYSINE 10 A MLY 108 A MLY 596 ? LYS N-DIMETHYL-LYSINE 11 B MLY 10 B MLY 498 ? LYS N-DIMETHYL-LYSINE 12 B MLY 24 B MLY 512 ? LYS N-DIMETHYL-LYSINE 13 B MSE 42 B MSE 530 ? MET SELENOMETHIONINE 14 B MLY 47 B MLY 535 ? LYS N-DIMETHYL-LYSINE 15 B MLY 48 B MLY 536 ? LYS N-DIMETHYL-LYSINE 16 B MSE 58 B MSE 546 ? MET SELENOMETHIONINE 17 B MSE 72 B MSE 560 ? MET SELENOMETHIONINE 18 B MLY 90 B MLY 578 ? LYS N-DIMETHYL-LYSINE 19 B MLY 106 B MLY 594 ? LYS N-DIMETHYL-LYSINE 20 B MLY 108 B MLY 596 ? LYS N-DIMETHYL-LYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J 2 1 A,C,D,E,F,I 2 2 B,G,H,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2190 ? 1 MORE -67 ? 1 'SSA (A^2)' 11230 ? 2 'ABSA (A^2)' 2390 ? 2 MORE -74 ? 2 'SSA (A^2)' 11020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_455 x-1/2,-y+1/2,-z+1/4 1.0000000000 0.0000000000 0.0000000000 -31.8170000000 0.0000000000 -1.0000000000 0.0000000000 31.8170000000 0.0000000000 0.0000000000 -1.0000000000 28.3512500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-27 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -2.3994 6.8782 11.0967 0.0517 -0.0630 -0.1622 0.0417 0.0053 -0.0103 3.0327 1.3401 1.7493 0.0029 -0.5162 -0.4354 0.1753 -0.1154 -0.0599 0.1700 -0.1455 0.0046 -0.1459 0.2345 0.0955 'X-RAY DIFFRACTION' 2 ? refined 21.1048 2.7096 15.2322 0.0275 -0.1767 -0.1073 -0.0325 -0.1909 0.0164 3.7605 1.4813 1.7547 1.0366 1.0260 0.2300 0.5241 -0.0180 -0.5061 -0.1369 -0.6925 -0.3889 0.2133 0.4952 -0.0549 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 496 A 600 '{ A|496 - 600 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 B 600 '{ B|0 - 600 }' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.15 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3SO5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 490-600 OF THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 506 ? CG ? A GLU 18 CG 2 1 Y 1 A GLU 506 ? CD ? A GLU 18 CD 3 1 Y 1 A GLU 506 ? OE1 ? A GLU 18 OE1 4 1 Y 1 A GLU 506 ? OE2 ? A GLU 18 OE2 5 1 Y 1 A MLY 512 ? CH1 ? A MLY 24 CH1 6 1 Y 1 A MLY 512 ? CH2 ? A MLY 24 CH2 7 1 Y 1 A GLU 539 ? CD ? A GLU 51 CD 8 1 Y 1 A GLU 539 ? OE1 ? A GLU 51 OE1 9 1 Y 1 A GLU 539 ? OE2 ? A GLU 51 OE2 10 1 Y 1 A MLY 578 ? CH1 ? A MLY 90 CH1 11 1 Y 1 A MLY 578 ? CH2 ? A MLY 90 CH2 12 1 Y 1 B MLY 512 ? CG ? B MLY 24 CG 13 1 Y 1 B MLY 512 ? CD ? B MLY 24 CD 14 1 Y 1 B MLY 512 ? CE ? B MLY 24 CE 15 1 Y 1 B MLY 512 ? NZ ? B MLY 24 NZ 16 1 Y 1 B MLY 512 ? CH1 ? B MLY 24 CH1 17 1 Y 1 B MLY 512 ? CH2 ? B MLY 24 CH2 18 1 Y 1 B GLN 542 ? CG ? B GLN 54 CG 19 1 Y 1 B GLN 542 ? CD ? B GLN 54 CD 20 1 Y 1 B GLN 542 ? OE1 ? B GLN 54 OE1 21 1 Y 1 B GLN 542 ? NE2 ? B GLN 54 NE2 22 1 Y 1 B GLU 572 ? CG ? B GLU 84 CG 23 1 Y 1 B GLU 572 ? CD ? B GLU 84 CD 24 1 Y 1 B GLU 572 ? OE1 ? B GLU 84 OE1 25 1 Y 1 B GLU 572 ? OE2 ? B GLU 84 OE2 26 1 Y 1 B PHE 573 ? CG ? B PHE 85 CG 27 1 Y 1 B PHE 573 ? CD1 ? B PHE 85 CD1 28 1 Y 1 B PHE 573 ? CD2 ? B PHE 85 CD2 29 1 Y 1 B PHE 573 ? CE1 ? B PHE 85 CE1 30 1 Y 1 B PHE 573 ? CE2 ? B PHE 85 CE2 31 1 Y 1 B PHE 573 ? CZ ? B PHE 85 CZ 32 1 Y 1 B THR 574 ? OG1 ? B THR 86 OG1 33 1 Y 1 B THR 574 ? CG2 ? B THR 86 CG2 34 1 Y 1 B MLY 578 ? CH1 ? B MLY 90 CH1 35 1 Y 1 B MLY 578 ? CH2 ? B MLY 90 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DMG 0 ? A DMG 1 2 1 Y 1 A GLY 490 ? A GLY 2 3 1 Y 1 A PHE 491 ? A PHE 3 4 1 Y 1 A VAL 492 ? A VAL 4 5 1 Y 1 A CYS 493 ? A CYS 5 6 1 Y 1 A ASP 494 ? A ASP 6 7 1 Y 1 A ASP 495 ? A ASP 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #