data_3SOY # _entry.id 3SOY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SOY RCSB RCSB066471 WWPDB D_1000066471 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC101574 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3SOY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Li, H.' 2 'Jedrzejczak, R.' 3 'Brown, R.N.' 4 'Adkins, J.N.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 'Program for the Characterization of Secreted Effector Proteins (PCSEP)' 8 # _citation.id primary _citation.title 'Nuclear transport factor 2 (NTF2-like) superfamily protein from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Li, H.' 2 primary 'Jedrzejczak, R.' 3 primary 'Brown, R.N.' 4 primary 'Adkins, J.N.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 3SOY _cell.length_a 79.346 _cell.length_b 79.346 _cell.length_c 107.293 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SOY _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NTF2-like superfamily protein' 16280.913 1 ? ? 'residues 39-180' ? 2 non-polymer syn 'MALONATE ION' 102.046 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 5 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative outer membrane protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAATSTVKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTT(MSE)GKTFSKRTLKL DAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYSGPAKTGVGEGY ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAATSTVKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPP AIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYSGPAKTGVGEGY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC101574 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ALA n 1 5 THR n 1 6 SER n 1 7 THR n 1 8 VAL n 1 9 LYS n 1 10 GLN n 1 11 GLU n 1 12 ILE n 1 13 THR n 1 14 GLU n 1 15 GLY n 1 16 ILE n 1 17 ASN n 1 18 ARG n 1 19 TYR n 1 20 LEU n 1 21 TYR n 1 22 SER n 1 23 ILE n 1 24 ASP n 1 25 LYS n 1 26 ALA n 1 27 ASP n 1 28 PRO n 1 29 THR n 1 30 LEU n 1 31 GLY n 1 32 LYS n 1 33 GLN n 1 34 LEU n 1 35 PHE n 1 36 TYR n 1 37 VAL n 1 38 SER n 1 39 PRO n 1 40 GLU n 1 41 THR n 1 42 SER n 1 43 PHE n 1 44 ILE n 1 45 HIS n 1 46 PRO n 1 47 ARG n 1 48 GLY n 1 49 HIS n 1 50 GLU n 1 51 ARG n 1 52 GLY n 1 53 TRP n 1 54 SER n 1 55 GLN n 1 56 ILE n 1 57 ALA n 1 58 GLU n 1 59 ASN n 1 60 PHE n 1 61 TYR n 1 62 GLY n 1 63 THR n 1 64 THR n 1 65 MSE n 1 66 GLY n 1 67 LYS n 1 68 THR n 1 69 PHE n 1 70 SER n 1 71 LYS n 1 72 ARG n 1 73 THR n 1 74 LEU n 1 75 LYS n 1 76 LEU n 1 77 ASP n 1 78 ALA n 1 79 PRO n 1 80 PRO n 1 81 ALA n 1 82 ILE n 1 83 HIS n 1 84 VAL n 1 85 TYR n 1 86 GLY n 1 87 ASN n 1 88 ALA n 1 89 ALA n 1 90 VAL n 1 91 ALA n 1 92 GLU n 1 93 PHE n 1 94 ASP n 1 95 TRP n 1 96 HIS n 1 97 PHE n 1 98 THR n 1 99 ALA n 1 100 VAL n 1 101 ARG n 1 102 ARG n 1 103 ASP n 1 104 ASN n 1 105 GLY n 1 106 GLN n 1 107 THR n 1 108 GLN n 1 109 HIS n 1 110 THR n 1 111 THR n 1 112 GLY n 1 113 ARG n 1 114 GLU n 1 115 SER n 1 116 GLN n 1 117 VAL n 1 118 TRP n 1 119 ALA n 1 120 LYS n 1 121 ILE n 1 122 PRO n 1 123 ASN n 1 124 THR n 1 125 GLY n 1 126 TRP n 1 127 ARG n 1 128 ILE n 1 129 VAL n 1 130 HIS n 1 131 VAL n 1 132 HIS n 1 133 TYR n 1 134 SER n 1 135 GLY n 1 136 PRO n 1 137 ALA n 1 138 LYS n 1 139 THR n 1 140 GLY n 1 141 VAL n 1 142 GLY n 1 143 GLU n 1 144 GLY n 1 145 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene STM1528 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LT2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella enterica subsp. enterica serovar Typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 99287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8ZPH9_SALTY _struct_ref.pdbx_db_accession Q8ZPH9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATSTVKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIH VYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYSGPAKTGVGEGY ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SOY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 145 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8ZPH9 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 39 _struct_ref_seq.pdbx_auth_seq_align_end 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SOY SER A 1 ? UNP Q8ZPH9 ? ? 'EXPRESSION TAG' 36 1 1 3SOY ASN A 2 ? UNP Q8ZPH9 ? ? 'EXPRESSION TAG' 37 2 1 3SOY ALA A 3 ? UNP Q8ZPH9 ? ? 'EXPRESSION TAG' 38 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3SOY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_percent_sol 52.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.1M Sodium Malonate pH 7.0, 0.1M HEPES:NaOH pH 7.0, 0.5% Jeffamine ED-2001 pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-03-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97931 1.0 2 0.97918 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97931, 0.97918' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3SOY _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 56.11 _reflns.d_resolution_high 2.000 _reflns.number_obs 11364 _reflns.number_all 11364 _reflns.percent_possible_obs 95.300 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.300 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.000 2.030 78.300 0.787 ? ? 8.500 ? ? ? ? ? ? 1 2 2.030 2.070 81.300 0.703 ? ? 10.300 ? ? ? ? ? ? 1 3 2.070 2.110 84.900 0.551 ? ? 11.700 ? ? ? ? ? ? 1 4 2.110 2.150 87.500 0.509 ? ? 12.800 ? ? ? ? ? ? 1 5 2.150 2.200 89.400 0.442 ? ? 13.300 ? ? ? ? ? ? 1 6 2.200 2.250 92.600 0.469 ? ? 13.200 ? ? ? ? ? ? 1 7 2.250 2.310 95.700 0.390 ? ? 13.400 ? ? ? ? ? ? 1 8 2.310 2.370 99.100 0.359 ? ? 13.700 ? ? ? ? ? ? 1 9 2.370 2.440 100.000 0.299 ? ? 13.900 ? ? ? ? ? ? 1 10 2.440 2.520 100.000 0.218 ? ? 14.500 ? ? ? ? ? ? 1 11 2.520 2.610 100.000 0.184 ? ? 14.400 ? ? ? ? ? ? 1 12 2.610 2.710 100.000 0.146 ? ? 14.400 ? ? ? ? ? ? 1 13 2.710 2.840 100.000 0.116 ? ? 14.400 ? ? ? ? ? ? 1 14 2.840 2.990 100.000 0.101 ? ? 14.300 ? ? ? ? ? ? 1 15 2.990 3.170 100.000 0.079 ? ? 14.200 ? ? ? ? ? ? 1 16 3.170 3.420 100.000 0.067 ? ? 14.300 ? ? ? ? ? ? 1 17 3.420 3.760 99.800 0.062 ? ? 14.000 ? ? ? ? ? ? 1 18 3.760 4.310 100.000 0.060 ? ? 13.500 ? ? ? ? ? ? 1 19 4.310 5.430 99.800 0.056 ? ? 13.200 ? ? ? ? ? ? 1 20 5.430 50.000 96.900 0.060 ? ? 11.800 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3SOY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10779 _refine.ls_number_reflns_all 11316 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.11 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 95.03 _refine.ls_R_factor_obs 0.17795 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17579 _refine.ls_R_factor_R_free 0.22085 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 537 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.B_iso_mean 45.720 _refine.aniso_B[1][1] -2.64 _refine.aniso_B[2][2] -2.64 _refine.aniso_B[3][3] 5.27 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.165 _refine.pdbx_overall_ESU_R_Free 0.153 _refine.overall_SU_ML 0.158 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.159 _refine.overall_SU_R_Cruickshank_DPI 0.1649 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1127 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1216 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 56.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 1177 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 792 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.742 1.918 ? 1597 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.966 3.000 ? 1905 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.417 5.000 ? 141 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.075 22.857 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.719 15.000 ? 175 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.115 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 165 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 1327 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 263 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.712 1.500 ? 703 'X-RAY DIFFRACTION' ? r_mcbond_other 0.192 1.500 ? 290 'X-RAY DIFFRACTION' ? r_mcangle_it 1.361 2.000 ? 1134 'X-RAY DIFFRACTION' ? r_scbond_it 2.327 3.000 ? 474 'X-RAY DIFFRACTION' ? r_scangle_it 3.806 4.500 ? 463 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.number_reflns_R_work 652 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 78.29 _refine_ls_shell.R_factor_R_free 0.347 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3SOY _struct.title 'Nuclear transport factor 2 (NTF2-like) superfamily protein from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2' _struct.pdbx_descriptor 'NTF2-like superfamily protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SOY _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, putative outer membrane protein, Secreted Effector Proteins, MEMBRANE PROTEIN, Program for the Characterization of Secreted Effector Proteins, PCSEP ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;likely dimer: x,y,z and x,-y+1/2,-z+1/4 ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 4 ? LYS A 25 ? ALA A 39 LYS A 60 1 ? 22 HELX_P HELX_P2 2 ASP A 27 ? LYS A 32 ? ASP A 62 LYS A 67 1 ? 6 HELX_P HELX_P3 3 GLY A 52 ? PHE A 60 ? GLY A 87 PHE A 95 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 64 C ? ? ? 1_555 A MSE 65 N ? ? A THR 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 65 C ? ? ? 1_555 A GLY 66 N ? ? A MSE 100 A GLY 101 1_555 ? ? ? ? ? ? ? 1.343 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 48 ? ARG A 51 ? GLY A 83 ARG A 86 A 2 SER A 42 ? HIS A 45 ? SER A 77 HIS A 80 A 3 GLY A 125 ? SER A 134 ? GLY A 160 SER A 169 A 4 THR A 107 ? ILE A 121 ? THR A 142 ILE A 156 A 5 ALA A 88 ? ARG A 101 ? ALA A 123 ARG A 136 A 6 PHE A 69 ? LEU A 76 ? PHE A 104 LEU A 111 B 1 GLY A 48 ? ARG A 51 ? GLY A 83 ARG A 86 B 2 SER A 42 ? HIS A 45 ? SER A 77 HIS A 80 B 3 GLY A 125 ? SER A 134 ? GLY A 160 SER A 169 B 4 THR A 107 ? ILE A 121 ? THR A 142 ILE A 156 B 5 ALA A 88 ? ARG A 101 ? ALA A 123 ARG A 136 B 6 ALA A 81 ? TYR A 85 ? ALA A 116 TYR A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 50 ? O GLU A 85 N PHE A 43 ? N PHE A 78 A 2 3 N ILE A 44 ? N ILE A 79 O VAL A 131 ? O VAL A 166 A 3 4 O VAL A 129 ? O VAL A 164 N VAL A 117 ? N VAL A 152 A 4 5 O GLN A 108 ? O GLN A 143 N ALA A 99 ? N ALA A 134 A 5 6 O VAL A 100 ? O VAL A 135 N SER A 70 ? N SER A 105 B 1 2 O GLU A 50 ? O GLU A 85 N PHE A 43 ? N PHE A 78 B 2 3 N ILE A 44 ? N ILE A 79 O VAL A 131 ? O VAL A 166 B 3 4 O VAL A 129 ? O VAL A 164 N VAL A 117 ? N VAL A 152 B 4 5 O GLN A 108 ? O GLN A 143 N ALA A 99 ? N ALA A 134 B 5 6 O VAL A 90 ? O VAL A 125 N HIS A 83 ? N HIS A 118 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MLI A 1' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 181' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE IMD A 182' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 28 ? PRO A 63 . ? 1_555 ? 2 AC1 4 THR A 29 ? THR A 64 . ? 1_555 ? 3 AC1 4 LYS A 32 ? LYS A 67 . ? 1_555 ? 4 AC1 4 TRP A 53 ? TRP A 88 . ? 1_555 ? 5 AC2 8 SER A 38 ? SER A 73 . ? 3_645 ? 6 AC2 8 PRO A 39 ? PRO A 74 . ? 3_645 ? 7 AC2 8 GLY A 52 ? GLY A 87 . ? 3_645 ? 8 AC2 8 TRP A 53 ? TRP A 88 . ? 3_645 ? 9 AC2 8 SER A 54 ? SER A 89 . ? 3_645 ? 10 AC2 8 HIS A 109 ? HIS A 144 . ? 1_555 ? 11 AC2 8 THR A 111 ? THR A 146 . ? 1_555 ? 12 AC2 8 HOH E . ? HOH A 203 . ? 3_645 ? 13 AC3 4 HOH E . ? HOH A 32 . ? 1_555 ? 14 AC3 4 TYR A 19 ? TYR A 54 . ? 1_555 ? 15 AC3 4 GLU A 114 ? GLU A 149 . ? 1_555 ? 16 AC3 4 TYR A 133 ? TYR A 168 . ? 1_555 ? # _atom_sites.entry_id 3SOY _atom_sites.fract_transf_matrix[1][1] 0.012603 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012603 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009320 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 36 ? ? ? A . n A 1 2 ASN 2 37 ? ? ? A . n A 1 3 ALA 3 38 ? ? ? A . n A 1 4 ALA 4 39 39 ALA ALA A . n A 1 5 THR 5 40 40 THR THR A . n A 1 6 SER 6 41 41 SER SER A . n A 1 7 THR 7 42 42 THR THR A . n A 1 8 VAL 8 43 43 VAL VAL A . n A 1 9 LYS 9 44 44 LYS LYS A . n A 1 10 GLN 10 45 45 GLN GLN A . n A 1 11 GLU 11 46 46 GLU GLU A . n A 1 12 ILE 12 47 47 ILE ILE A . n A 1 13 THR 13 48 48 THR THR A . n A 1 14 GLU 14 49 49 GLU GLU A . n A 1 15 GLY 15 50 50 GLY GLY A . n A 1 16 ILE 16 51 51 ILE ILE A . n A 1 17 ASN 17 52 52 ASN ASN A . n A 1 18 ARG 18 53 53 ARG ARG A . n A 1 19 TYR 19 54 54 TYR TYR A . n A 1 20 LEU 20 55 55 LEU LEU A . n A 1 21 TYR 21 56 56 TYR TYR A . n A 1 22 SER 22 57 57 SER SER A . n A 1 23 ILE 23 58 58 ILE ILE A . n A 1 24 ASP 24 59 59 ASP ASP A . n A 1 25 LYS 25 60 60 LYS LYS A . n A 1 26 ALA 26 61 61 ALA ALA A . n A 1 27 ASP 27 62 62 ASP ASP A . n A 1 28 PRO 28 63 63 PRO PRO A . n A 1 29 THR 29 64 64 THR THR A . n A 1 30 LEU 30 65 65 LEU LEU A . n A 1 31 GLY 31 66 66 GLY GLY A . n A 1 32 LYS 32 67 67 LYS LYS A . n A 1 33 GLN 33 68 68 GLN GLN A . n A 1 34 LEU 34 69 69 LEU LEU A . n A 1 35 PHE 35 70 70 PHE PHE A . n A 1 36 TYR 36 71 71 TYR TYR A . n A 1 37 VAL 37 72 72 VAL VAL A . n A 1 38 SER 38 73 73 SER SER A . n A 1 39 PRO 39 74 74 PRO PRO A . n A 1 40 GLU 40 75 75 GLU GLU A . n A 1 41 THR 41 76 76 THR THR A . n A 1 42 SER 42 77 77 SER SER A . n A 1 43 PHE 43 78 78 PHE PHE A . n A 1 44 ILE 44 79 79 ILE ILE A . n A 1 45 HIS 45 80 80 HIS HIS A . n A 1 46 PRO 46 81 81 PRO PRO A . n A 1 47 ARG 47 82 82 ARG ARG A . n A 1 48 GLY 48 83 83 GLY GLY A . n A 1 49 HIS 49 84 84 HIS HIS A . n A 1 50 GLU 50 85 85 GLU GLU A . n A 1 51 ARG 51 86 86 ARG ARG A . n A 1 52 GLY 52 87 87 GLY GLY A . n A 1 53 TRP 53 88 88 TRP TRP A . n A 1 54 SER 54 89 89 SER SER A . n A 1 55 GLN 55 90 90 GLN GLN A . n A 1 56 ILE 56 91 91 ILE ILE A . n A 1 57 ALA 57 92 92 ALA ALA A . n A 1 58 GLU 58 93 93 GLU GLU A . n A 1 59 ASN 59 94 94 ASN ASN A . n A 1 60 PHE 60 95 95 PHE PHE A . n A 1 61 TYR 61 96 96 TYR TYR A . n A 1 62 GLY 62 97 97 GLY GLY A . n A 1 63 THR 63 98 98 THR THR A . n A 1 64 THR 64 99 99 THR THR A . n A 1 65 MSE 65 100 100 MSE MSE A . n A 1 66 GLY 66 101 101 GLY GLY A . n A 1 67 LYS 67 102 102 LYS LYS A . n A 1 68 THR 68 103 103 THR THR A . n A 1 69 PHE 69 104 104 PHE PHE A . n A 1 70 SER 70 105 105 SER SER A . n A 1 71 LYS 71 106 106 LYS LYS A . n A 1 72 ARG 72 107 107 ARG ARG A . n A 1 73 THR 73 108 108 THR THR A . n A 1 74 LEU 74 109 109 LEU LEU A . n A 1 75 LYS 75 110 110 LYS LYS A . n A 1 76 LEU 76 111 111 LEU LEU A . n A 1 77 ASP 77 112 112 ASP ASP A . n A 1 78 ALA 78 113 113 ALA ALA A . n A 1 79 PRO 79 114 114 PRO PRO A . n A 1 80 PRO 80 115 115 PRO PRO A . n A 1 81 ALA 81 116 116 ALA ALA A . n A 1 82 ILE 82 117 117 ILE ILE A . n A 1 83 HIS 83 118 118 HIS HIS A . n A 1 84 VAL 84 119 119 VAL VAL A . n A 1 85 TYR 85 120 120 TYR TYR A . n A 1 86 GLY 86 121 121 GLY GLY A . n A 1 87 ASN 87 122 122 ASN ASN A . n A 1 88 ALA 88 123 123 ALA ALA A . n A 1 89 ALA 89 124 124 ALA ALA A . n A 1 90 VAL 90 125 125 VAL VAL A . n A 1 91 ALA 91 126 126 ALA ALA A . n A 1 92 GLU 92 127 127 GLU GLU A . n A 1 93 PHE 93 128 128 PHE PHE A . n A 1 94 ASP 94 129 129 ASP ASP A . n A 1 95 TRP 95 130 130 TRP TRP A . n A 1 96 HIS 96 131 131 HIS HIS A . n A 1 97 PHE 97 132 132 PHE PHE A . n A 1 98 THR 98 133 133 THR THR A . n A 1 99 ALA 99 134 134 ALA ALA A . n A 1 100 VAL 100 135 135 VAL VAL A . n A 1 101 ARG 101 136 136 ARG ARG A . n A 1 102 ARG 102 137 137 ARG ARG A . n A 1 103 ASP 103 138 138 ASP ASP A . n A 1 104 ASN 104 139 139 ASN ASN A . n A 1 105 GLY 105 140 140 GLY GLY A . n A 1 106 GLN 106 141 141 GLN GLN A . n A 1 107 THR 107 142 142 THR THR A . n A 1 108 GLN 108 143 143 GLN GLN A . n A 1 109 HIS 109 144 144 HIS HIS A . n A 1 110 THR 110 145 145 THR THR A . n A 1 111 THR 111 146 146 THR THR A . n A 1 112 GLY 112 147 147 GLY GLY A . n A 1 113 ARG 113 148 148 ARG ARG A . n A 1 114 GLU 114 149 149 GLU GLU A . n A 1 115 SER 115 150 150 SER SER A . n A 1 116 GLN 116 151 151 GLN GLN A . n A 1 117 VAL 117 152 152 VAL VAL A . n A 1 118 TRP 118 153 153 TRP TRP A . n A 1 119 ALA 119 154 154 ALA ALA A . n A 1 120 LYS 120 155 155 LYS LYS A . n A 1 121 ILE 121 156 156 ILE ILE A . n A 1 122 PRO 122 157 157 PRO PRO A . n A 1 123 ASN 123 158 158 ASN ASN A . n A 1 124 THR 124 159 159 THR THR A . n A 1 125 GLY 125 160 160 GLY GLY A . n A 1 126 TRP 126 161 161 TRP TRP A . n A 1 127 ARG 127 162 162 ARG ARG A . n A 1 128 ILE 128 163 163 ILE ILE A . n A 1 129 VAL 129 164 164 VAL VAL A . n A 1 130 HIS 130 165 165 HIS HIS A . n A 1 131 VAL 131 166 166 VAL VAL A . n A 1 132 HIS 132 167 167 HIS HIS A . n A 1 133 TYR 133 168 168 TYR TYR A . n A 1 134 SER 134 169 169 SER SER A . n A 1 135 GLY 135 170 170 GLY GLY A . n A 1 136 PRO 136 171 171 PRO PRO A . n A 1 137 ALA 137 172 172 ALA ALA A . n A 1 138 LYS 138 173 173 LYS LYS A . n A 1 139 THR 139 174 174 THR THR A . n A 1 140 GLY 140 175 175 GLY GLY A . n A 1 141 VAL 141 176 176 VAL VAL A . n A 1 142 GLY 142 177 177 GLY GLY A . n A 1 143 GLU 143 178 178 GLU GLU A . n A 1 144 GLY 144 179 179 GLY GLY A . n A 1 145 TYR 145 180 180 TYR TYR A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'Midwest Center for Structural Genomics' MCSG 2 PSI:Biology 'Program for the Characterization of Secreted Effector Proteins' PCSEP # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI 1 1 1 MLI MLI A . C 3 GOL 1 181 1 GOL GOL A . D 4 IMD 1 182 1 IMD IMD A . E 5 HOH 1 2 2 HOH HOH A . E 5 HOH 2 3 3 HOH HOH A . E 5 HOH 3 4 4 HOH HOH A . E 5 HOH 4 5 5 HOH HOH A . E 5 HOH 5 6 6 HOH HOH A . E 5 HOH 6 7 7 HOH HOH A . E 5 HOH 7 8 8 HOH HOH A . E 5 HOH 8 9 9 HOH HOH A . E 5 HOH 9 10 10 HOH HOH A . E 5 HOH 10 11 11 HOH HOH A . E 5 HOH 11 12 12 HOH HOH A . E 5 HOH 12 13 13 HOH HOH A . E 5 HOH 13 14 14 HOH HOH A . E 5 HOH 14 15 15 HOH HOH A . E 5 HOH 15 16 16 HOH HOH A . E 5 HOH 16 17 17 HOH HOH A . E 5 HOH 17 18 18 HOH HOH A . E 5 HOH 18 19 19 HOH HOH A . E 5 HOH 19 20 20 HOH HOH A . E 5 HOH 20 21 21 HOH HOH A . E 5 HOH 21 22 22 HOH HOH A . E 5 HOH 22 23 23 HOH HOH A . E 5 HOH 23 24 24 HOH HOH A . E 5 HOH 24 25 25 HOH HOH A . E 5 HOH 25 26 26 HOH HOH A . E 5 HOH 26 27 27 HOH HOH A . E 5 HOH 27 28 28 HOH HOH A . E 5 HOH 28 29 29 HOH HOH A . E 5 HOH 29 30 30 HOH HOH A . E 5 HOH 30 31 31 HOH HOH A . E 5 HOH 31 32 32 HOH HOH A . E 5 HOH 32 33 33 HOH HOH A . E 5 HOH 33 34 34 HOH HOH A . E 5 HOH 34 35 35 HOH HOH A . E 5 HOH 35 183 1 HOH HOH A . E 5 HOH 36 184 36 HOH HOH A . E 5 HOH 37 185 37 HOH HOH A . E 5 HOH 38 186 38 HOH HOH A . E 5 HOH 39 187 39 HOH HOH A . E 5 HOH 40 188 40 HOH HOH A . E 5 HOH 41 189 41 HOH HOH A . E 5 HOH 42 190 42 HOH HOH A . E 5 HOH 43 191 43 HOH HOH A . E 5 HOH 44 192 44 HOH HOH A . E 5 HOH 45 193 45 HOH HOH A . E 5 HOH 46 194 46 HOH HOH A . E 5 HOH 47 195 47 HOH HOH A . E 5 HOH 48 196 48 HOH HOH A . E 5 HOH 49 197 49 HOH HOH A . E 5 HOH 50 198 50 HOH HOH A . E 5 HOH 51 199 51 HOH HOH A . E 5 HOH 52 200 52 HOH HOH A . E 5 HOH 53 201 53 HOH HOH A . E 5 HOH 54 202 54 HOH HOH A . E 5 HOH 55 203 55 HOH HOH A . E 5 HOH 56 204 56 HOH HOH A . E 5 HOH 57 205 57 HOH HOH A . E 5 HOH 58 206 58 HOH HOH A . E 5 HOH 59 207 59 HOH HOH A . E 5 HOH 60 208 60 HOH HOH A . E 5 HOH 61 209 61 HOH HOH A . E 5 HOH 62 210 62 HOH HOH A . E 5 HOH 63 211 63 HOH HOH A . E 5 HOH 64 212 64 HOH HOH A . E 5 HOH 65 213 65 HOH HOH A . E 5 HOH 66 214 66 HOH HOH A . E 5 HOH 67 215 67 HOH HOH A . E 5 HOH 68 216 68 HOH HOH A . E 5 HOH 69 217 69 HOH HOH A . E 5 HOH 70 218 70 HOH HOH A . E 5 HOH 71 219 71 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 65 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 100 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5110 ? 1 MORE 3 ? 1 'SSA (A^2)' 12380 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 39.6730000000 0.0000000000 0.0000000000 -1.0000000000 26.8232500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-10 2 'Structure model' 1 1 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 11364 _diffrn_reflns.pdbx_Rmerge_I_obs 0.079 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.46 _diffrn_reflns.av_sigmaI_over_netI 44.66 _diffrn_reflns.pdbx_redundancy 13.30 _diffrn_reflns.pdbx_percent_possible_obs 95.30 _diffrn_reflns.number 150954 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.43 50.00 ? ? 0.060 ? 5.183 11.80 96.90 1 4.31 5.43 ? ? 0.056 ? 3.638 13.20 99.80 1 3.76 4.31 ? ? 0.060 ? 3.202 13.50 100.00 1 3.42 3.76 ? ? 0.062 ? 2.258 14.00 99.80 1 3.17 3.42 ? ? 0.067 ? 1.542 14.30 100.00 1 2.99 3.17 ? ? 0.079 ? 1.267 14.20 100.00 1 2.84 2.99 ? ? 0.101 ? 1.109 14.30 100.00 1 2.71 2.84 ? ? 0.116 ? 0.995 14.40 100.00 1 2.61 2.71 ? ? 0.146 ? 0.895 14.40 100.00 1 2.52 2.61 ? ? 0.184 ? 0.837 14.40 100.00 1 2.44 2.52 ? ? 0.218 ? 0.820 14.50 100.00 1 2.37 2.44 ? ? 0.299 ? 0.797 13.90 100.00 1 2.31 2.37 ? ? 0.359 ? 0.780 13.70 99.10 1 2.25 2.31 ? ? 0.390 ? 0.725 13.40 95.70 1 2.20 2.25 ? ? 0.469 ? 0.707 13.20 92.60 1 2.15 2.20 ? ? 0.442 ? 0.720 13.30 89.40 1 2.11 2.15 ? ? 0.509 ? 0.664 12.80 87.50 1 2.07 2.11 ? ? 0.551 ? 0.646 11.70 84.90 1 2.03 2.07 ? ? 0.703 ? 0.658 10.30 81.30 1 2.00 2.03 ? ? 0.787 ? 0.631 8.50 78.30 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 51.2227 _pdbx_refine_tls.origin_y 9.6149 _pdbx_refine_tls.origin_z 10.5118 _pdbx_refine_tls.T[1][1] 0.1280 _pdbx_refine_tls.T[2][2] 0.0985 _pdbx_refine_tls.T[3][3] 0.2322 _pdbx_refine_tls.T[1][2] -0.0542 _pdbx_refine_tls.T[1][3] 0.1202 _pdbx_refine_tls.T[2][3] -0.1132 _pdbx_refine_tls.L[1][1] 1.1029 _pdbx_refine_tls.L[2][2] 2.7642 _pdbx_refine_tls.L[3][3] 2.4508 _pdbx_refine_tls.L[1][2] 0.1879 _pdbx_refine_tls.L[1][3] -0.0673 _pdbx_refine_tls.L[2][3] 0.9705 _pdbx_refine_tls.S[1][1] -0.1954 _pdbx_refine_tls.S[1][2] 0.0616 _pdbx_refine_tls.S[1][3] -0.2128 _pdbx_refine_tls.S[2][1] 0.0831 _pdbx_refine_tls.S[2][2] -0.1608 _pdbx_refine_tls.S[2][3] -0.1404 _pdbx_refine_tls.S[3][1] 0.3389 _pdbx_refine_tls.S[3][2] -0.2073 _pdbx_refine_tls.S[3][3] 0.3562 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 39 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 180 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 2.10 50.00 8596 0.100 0.000 1.770 1476 0.100 0.000 1.000 2 2.10 50.00 6586 19.400 0.270 0.980 1255 27.100 0.240 0.950 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.98 50.00 22 0.800 0.000 2.100 25 0.400 0.000 1.000 1 7.46 12.98 133 0.500 0.000 1.180 75 0.400 0.000 1.000 1 5.23 7.46 342 0.500 0.000 1.720 126 0.300 0.000 1.000 1 4.03 5.23 645 0.300 0.000 1.130 172 0.200 0.000 1.000 1 3.28 4.03 1058 0.200 0.000 1.360 219 0.100 0.000 1.000 1 2.76 3.28 1552 0.100 0.000 3.140 263 0.000 0.000 1.000 1 2.39 2.76 2162 0.100 0.000 9.100 305 0.000 0.000 1.000 1 2.10 2.39 2682 0.000 0.000 2.320 291 0.000 0.000 1.000 2 12.98 50.00 22 39.000 0.760 0.940 22 50.300 0.450 0.870 2 7.46 12.98 133 31.900 0.720 0.950 74 42.800 0.460 0.930 2 5.23 7.46 342 28.200 0.620 0.960 126 34.500 0.460 0.900 2 4.03 5.23 645 30.300 0.380 0.980 172 38.700 0.260 0.940 2 3.28 4.03 1058 25.000 0.270 0.990 219 29.700 0.190 0.970 2 2.76 3.28 1552 16.200 0.230 0.990 263 20.100 0.150 0.970 2 2.39 2.76 2160 14.400 0.130 1.000 299 17.600 0.090 0.990 2 2.10 2.39 674 16.200 0.070 1.000 80 20.400 0.050 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se 0.730 0.074 0.068 49.4076 0.000 6.340 2 Se 0.731 0.073 0.067 69.4369 -0.174 4.089 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.98 50.00 47 0.453 25 0.277 22 0.652 7.46 12.98 208 0.528 75 0.274 133 0.671 5.23 7.46 468 0.569 126 0.316 342 0.661 4.03 5.23 817 0.506 172 0.218 645 0.583 3.28 4.03 1277 0.464 219 0.144 1058 0.530 2.76 3.28 1815 0.334 263 0.122 1552 0.370 2.39 2.76 2467 0.191 305 0.059 2162 0.209 2.10 2.39 2973 0.075 291 0.007 2682 0.083 # _pdbx_phasing_dm.entry_id 3SOY _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 11352 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.920 100.000 53.000 ? ? ? 0.845 ? ? 503 4.660 5.920 46.900 ? ? ? 0.929 ? ? 505 4.060 4.660 53.200 ? ? ? 0.921 ? ? 512 3.670 4.060 55.100 ? ? ? 0.914 ? ? 512 3.390 3.670 50.500 ? ? ? 0.911 ? ? 503 3.190 3.390 59.000 ? ? ? 0.890 ? ? 511 3.020 3.190 65.000 ? ? ? 0.838 ? ? 511 2.890 3.020 65.700 ? ? ? 0.788 ? ? 506 2.770 2.890 71.000 ? ? ? 0.788 ? ? 502 2.680 2.770 67.300 ? ? ? 0.791 ? ? 506 2.590 2.680 73.200 ? ? ? 0.758 ? ? 501 2.520 2.590 70.500 ? ? ? 0.744 ? ? 502 2.450 2.520 78.100 ? ? ? 0.748 ? ? 507 2.390 2.450 83.100 ? ? ? 0.753 ? ? 505 2.330 2.390 82.500 ? ? ? 0.747 ? ? 501 2.280 2.330 87.700 ? ? ? 0.737 ? ? 508 2.230 2.280 80.900 ? ? ? 0.787 ? ? 509 2.180 2.230 79.900 ? ? ? 0.798 ? ? 503 2.140 2.180 85.900 ? ? ? 0.803 ? ? 506 2.100 2.140 83.400 ? ? ? 0.821 ? ? 502 2.060 2.100 86.800 ? ? ? 0.814 ? ? 511 2.000 2.060 87.800 ? ? ? 0.648 ? ? 726 # _phasing.method MAD # _phasing_MAD.entry_id 3SOY _phasing_MAD.pdbx_d_res_high 2.10 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 10072 _phasing_MAD.pdbx_fom 0.269 _phasing_MAD.pdbx_reflns_centric 1476 _phasing_MAD.pdbx_fom_centric 0.128 _phasing_MAD.pdbx_reflns_acentric 8596 _phasing_MAD.pdbx_fom_acentric 0.293 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 4 DM 6.1 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 8 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 10 HKL-3000 . ? ? ? ? phasing ? ? ? 11 SHELXD . ? ? ? ? phasing ? ? ? 12 SHELXE . ? ? ? ? 'model building' ? ? ? 13 SOLVE . ? ? ? ? phasing ? ? ? 14 RESOLVE . ? ? ? ? phasing ? ? ? 15 ARP/wARP . ? ? ? ? 'model building' ? ? ? 16 CCP4 . ? ? ? ? phasing ? ? ? 17 O . ? ? ? ? 'model building' ? ? ? 18 Coot . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 61 ? ? 39.86 49.83 2 1 ASN A 158 ? ? 48.29 21.38 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 106 ? CG ? A LYS 71 CG 2 1 Y 1 A LYS 106 ? CD ? A LYS 71 CD 3 1 Y 1 A LYS 106 ? CE ? A LYS 71 CE 4 1 Y 1 A LYS 106 ? NZ ? A LYS 71 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 36 ? A SER 1 2 1 Y 1 A ASN 37 ? A ASN 2 3 1 Y 1 A ALA 38 ? A ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONATE ION' MLI 3 GLYCEROL GOL 4 IMIDAZOLE IMD 5 water HOH #