HEADER HYDROLASE 05-JUL-11 3SQH TITLE CRYSTAL STRUCTURE OF PRETHROMBIN-2 MUTANT S195A IN THE THE OPEN FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN, HEAVY CHAIN; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 333-622; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2, HUMAN CDNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.POZZI,Z.CHEN,E.DI CERA REVDAT 3 13-SEP-23 3SQH 1 SEQADV REVDAT 2 23-MAY-12 3SQH 1 JRNL REVDAT 1 30-NOV-11 3SQH 0 JRNL AUTH N.POZZI,Z.CHEN,F.ZAPATA,L.A.PELC,S.BARRANCO-MEDINA,E.DI CERA JRNL TITL CRYSTAL STRUCTURES OF PRETHROMBIN-2 REVEAL ALTERNATIVE JRNL TITL 2 CONFORMATIONS UNDER IDENTICAL SOLUTION CONDITIONS AND THE JRNL TITL 3 MECHANISM OF ZYMOGEN ACTIVATION. JRNL REF BIOCHEMISTRY V. 50 10195 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 22049947 JRNL DOI 10.1021/BI2015019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.VIJAYALAKSHMI,K.P.PADMANABHAN,K.G.MANN,A.TULINSKY REMARK 1 TITL THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-, AND REMARK 1 TITL 2 PPACK-THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE REMARK 1 TITL 3 BINDING TO THROMBIN. REMARK 1 REF PROTEIN SCI. V. 3 2254 1994 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 7756983 REMARK 1 DOI 10.1002/PRO.5560031211 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : -0.800 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 12443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2365 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3195 ; 1.444 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;37.101 ;23.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;20.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1795 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1411 ; 0.588 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2274 ; 1.078 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 954 ; 1.699 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 921 ; 2.601 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 24 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7690 4.4013 6.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.2295 REMARK 3 T33: 0.1828 T12: 0.0155 REMARK 3 T13: -0.0531 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.1876 L22: 1.3495 REMARK 3 L33: 4.4344 L12: -0.7460 REMARK 3 L13: -2.6852 L23: -0.8450 REMARK 3 S TENSOR REMARK 3 S11: 0.1943 S12: 0.1276 S13: -0.0723 REMARK 3 S21: -0.1889 S22: -0.1103 S23: 0.0919 REMARK 3 S31: 0.0616 S32: 0.0325 S33: -0.0841 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 25 E 72 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2375 -7.0480 10.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.1842 T22: 0.1611 REMARK 3 T33: 0.2173 T12: 0.0328 REMARK 3 T13: 0.0158 T23: -0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.5445 L22: 1.7404 REMARK 3 L33: 3.0740 L12: -0.6783 REMARK 3 L13: 1.4745 L23: -0.4929 REMARK 3 S TENSOR REMARK 3 S11: 0.2453 S12: 0.2661 S13: -0.4367 REMARK 3 S21: -0.3056 S22: -0.1358 S23: 0.0046 REMARK 3 S31: 0.4727 S32: 0.2010 S33: -0.1094 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 73 E 85 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5049 -11.1483 -1.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.5663 T22: 0.5103 REMARK 3 T33: 0.6648 T12: 0.1044 REMARK 3 T13: -0.1187 T23: -0.3565 REMARK 3 L TENSOR REMARK 3 L11: 1.0136 L22: 6.7432 REMARK 3 L33: 2.7441 L12: 1.4363 REMARK 3 L13: 1.1060 L23: 4.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: 0.4974 S13: -0.6527 REMARK 3 S21: -0.4745 S22: 0.0883 S23: -0.0239 REMARK 3 S31: 0.1031 S32: 0.0795 S33: -0.2307 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 86 E 106 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2582 0.2872 21.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.0805 T22: 0.0657 REMARK 3 T33: 0.1054 T12: 0.0177 REMARK 3 T13: -0.0113 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.2049 L22: 6.1080 REMARK 3 L33: 2.9870 L12: 0.3238 REMARK 3 L13: -0.9370 L23: -2.8143 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.2081 S13: -0.0325 REMARK 3 S21: 0.3510 S22: 0.0182 S23: -0.1114 REMARK 3 S31: 0.0682 S32: 0.0264 S33: -0.0627 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 107 E 145 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9120 4.5101 9.6007 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1239 REMARK 3 T33: 0.0911 T12: 0.0385 REMARK 3 T13: -0.0412 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.8668 L22: 2.7878 REMARK 3 L33: 2.5848 L12: -0.0133 REMARK 3 L13: -0.5239 L23: 0.7403 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.1023 S13: -0.1158 REMARK 3 S21: -0.2058 S22: -0.0634 S23: 0.0958 REMARK 3 S31: -0.0049 S32: 0.0395 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 146 E 153 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5472 -17.6019 18.5832 REMARK 3 T TENSOR REMARK 3 T11: 1.2857 T22: 0.7470 REMARK 3 T33: 1.4929 T12: 0.1045 REMARK 3 T13: -0.1141 T23: -0.0805 REMARK 3 L TENSOR REMARK 3 L11: 8.2895 L22: 0.0946 REMARK 3 L33: 3.1481 L12: 0.0296 REMARK 3 L13: -5.1034 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.8631 S12: -1.0603 S13: -1.3245 REMARK 3 S21: 0.3247 S22: 0.0107 S23: -0.0109 REMARK 3 S31: 0.5628 S32: 0.6905 S33: 0.8524 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 154 E 184 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4360 1.6976 26.2535 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.1920 REMARK 3 T33: 0.1665 T12: -0.0402 REMARK 3 T13: 0.0392 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.2424 L22: 1.7275 REMARK 3 L33: 3.7408 L12: -0.1996 REMARK 3 L13: -0.2763 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.6212 S13: -0.1207 REMARK 3 S21: 0.5114 S22: -0.0293 S23: 0.1777 REMARK 3 S31: 0.2532 S32: -0.3052 S33: -0.1117 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 185 E 191 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2394 -4.8356 24.3078 REMARK 3 T TENSOR REMARK 3 T11: 0.8203 T22: 0.7036 REMARK 3 T33: 0.7026 T12: -0.2396 REMARK 3 T13: 0.1109 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 3.7317 L22: 1.1112 REMARK 3 L33: 1.4545 L12: 2.0188 REMARK 3 L13: -2.2788 L23: -1.2069 REMARK 3 S TENSOR REMARK 3 S11: -0.3211 S12: -0.1226 S13: -0.4499 REMARK 3 S21: -0.0613 S22: -0.0801 S23: -0.2021 REMARK 3 S31: 0.3604 S32: -0.0740 S33: 0.4013 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 192 E 234 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6929 2.8809 18.2035 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.1177 REMARK 3 T33: 0.0829 T12: -0.0010 REMARK 3 T13: 0.0336 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.7685 L22: 3.2792 REMARK 3 L33: 3.8175 L12: -1.7494 REMARK 3 L13: 1.6748 L23: 0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.3244 S13: -0.2507 REMARK 3 S21: 0.2365 S22: 0.1052 S23: 0.2965 REMARK 3 S31: 0.2927 S32: -0.3299 S33: -0.1072 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 235 E 247 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8465 10.5874 11.7019 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1306 REMARK 3 T33: 0.2335 T12: 0.0328 REMARK 3 T13: 0.0157 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 4.7155 L22: 3.8638 REMARK 3 L33: 12.6433 L12: 1.2414 REMARK 3 L13: -3.0940 L23: -0.4929 REMARK 3 S TENSOR REMARK 3 S11: 0.1367 S12: 0.5987 S13: 0.2474 REMARK 3 S21: -0.3574 S22: -0.1312 S23: -0.0951 REMARK 3 S31: -0.4686 S32: -0.1254 S33: -0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1HAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 11% PEG8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.02150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN E 149B REMARK 465 VAL E 149C REMARK 465 GLY E 149D REMARK 465 LYS E 149E REMARK 465 GLY E 149F REMARK 465 GLN E 149G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 7 -88.61 -126.21 REMARK 500 TYR E 60A 81.52 -156.66 REMARK 500 HIS E 71 -53.31 -129.66 REMARK 500 ILE E 79 -63.81 -126.94 REMARK 500 GLU E 97A -53.33 -129.21 REMARK 500 ASN E 98 10.33 -154.01 REMARK 500 ARG E 221A 102.93 55.68 REMARK 500 ASP E 222 -31.92 -134.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HAG RELATED DB: PDB REMARK 900 THE ISOMORPHOUS STRUCTURES OF PRETHROMBIN2, HIRUGEN-AND PPACK- REMARK 900 THROMBIN: CHANGES ACCOMPANYING ACTIVATION AND EXOSITE BINDING TO REMARK 900 THROMBIN REMARK 900 RELATED ID: 3SQE RELATED DB: PDB DBREF 3SQH E 1C 247 UNP P00734 THRB_HUMAN 333 622 SEQADV 3SQH ALA E 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 E 290 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 E 290 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 E 290 TYR ILE ASP GLY ARG ILE VAL GLU GLY SER ASP ALA GLU SEQRES 4 E 290 ILE GLY MET SER PRO TRP GLN VAL MET LEU PHE ARG LYS SEQRES 5 E 290 SER PRO GLN GLU LEU LEU CYS GLY ALA SER LEU ILE SER SEQRES 6 E 290 ASP ARG TRP VAL LEU THR ALA ALA HIS CYS LEU LEU TYR SEQRES 7 E 290 PRO PRO TRP ASP LYS ASN PHE THR GLU ASN ASP LEU LEU SEQRES 8 E 290 VAL ARG ILE GLY LYS HIS SER ARG THR ARG TYR GLU ARG SEQRES 9 E 290 ASN ILE GLU LYS ILE SER MET LEU GLU LYS ILE TYR ILE SEQRES 10 E 290 HIS PRO ARG TYR ASN TRP ARG GLU ASN LEU ASP ARG ASP SEQRES 11 E 290 ILE ALA LEU MET LYS LEU LYS LYS PRO VAL ALA PHE SER SEQRES 12 E 290 ASP TYR ILE HIS PRO VAL CYS LEU PRO ASP ARG GLU THR SEQRES 13 E 290 ALA ALA SER LEU LEU GLN ALA GLY TYR LYS GLY ARG VAL SEQRES 14 E 290 THR GLY TRP GLY ASN LEU LYS GLU THR TRP THR ALA ASN SEQRES 15 E 290 VAL GLY LYS GLY GLN PRO SER VAL LEU GLN VAL VAL ASN SEQRES 16 E 290 LEU PRO ILE VAL GLU ARG PRO VAL CYS LYS ASP SER THR SEQRES 17 E 290 ARG ILE ARG ILE THR ASP ASN MET PHE CYS ALA GLY TYR SEQRES 18 E 290 LYS PRO ASP GLU GLY LYS ARG GLY ASP ALA CYS GLU GLY SEQRES 19 E 290 ASP ALA GLY GLY PRO PHE VAL MET LYS SER PRO PHE ASN SEQRES 20 E 290 ASN ARG TRP TYR GLN MET GLY ILE VAL SER TRP GLY GLU SEQRES 21 E 290 GLY CYS ASP ARG ASP GLY LYS TYR GLY PHE TYR THR HIS SEQRES 22 E 290 VAL PHE ARG LEU LYS LYS TRP ILE GLN LYS VAL ILE ASP SEQRES 23 E 290 GLN PHE GLY GLU FORMUL 2 HOH *82(H2 O) HELIX 1 1 PHE E 7 SER E 11 5 5 HELIX 2 2 THR E 14B SER E 14I 1 8 HELIX 3 3 ALA E 55 CYS E 58 5 4 HELIX 4 4 PRO E 60B ASP E 60E 5 4 HELIX 5 5 THR E 60I ASN E 62 5 3 HELIX 6 6 ASP E 125 LEU E 130 1 9 HELIX 7 7 GLY E 142 TRP E 148 1 7 HELIX 8 8 GLU E 164 THR E 172 1 9 HELIX 9 9 ASP E 189 GLY E 193 5 5 HELIX 10 10 LEU E 234 PHE E 245 1 12 SHEET 1 A 7 GLY E 19 ASP E 21 0 SHEET 2 A 7 GLN E 156 PRO E 161 -1 O VAL E 157 N SER E 20 SHEET 3 A 7 LYS E 135 GLY E 140 -1 N GLY E 136 O LEU E 160 SHEET 4 A 7 PRO E 198 LYS E 202 -1 O VAL E 200 N ARG E 137 SHEET 5 A 7 TRP E 207 GLY E 216 -1 O TYR E 208 N MET E 201 SHEET 6 A 7 GLY E 226 HIS E 230 -1 O PHE E 227 N TRP E 215 SHEET 7 A 7 MET E 180 ALA E 183 -1 N PHE E 181 O TYR E 228 SHEET 1 B 7 GLN E 30 ARG E 35 0 SHEET 2 B 7 GLU E 39 LEU E 46 -1 O LEU E 41 N LEU E 33 SHEET 3 B 7 TRP E 51 THR E 54 -1 O LEU E 53 N SER E 45 SHEET 4 B 7 ALA E 104 LEU E 108 -1 O MET E 106 N VAL E 52 SHEET 5 B 7 LYS E 81 ILE E 90 -1 N GLU E 86 O LYS E 107 SHEET 6 B 7 LEU E 64 ILE E 68 -1 N ILE E 68 O LYS E 81 SHEET 7 B 7 GLN E 30 ARG E 35 -1 N PHE E 34 O LEU E 65 SHEET 1 C 2 LEU E 60 TYR E 60A 0 SHEET 2 C 2 LYS E 60F ASN E 60G-1 O LYS E 60F N TYR E 60A SSBOND 1 CYS E 1 CYS E 122 1555 1555 2.06 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.05 SSBOND 3 CYS E 168 CYS E 182 1555 1555 2.04 SSBOND 4 CYS E 191 CYS E 220 1555 1555 2.04 CISPEP 1 SER E 36A PRO E 37 0 2.67 CRYST1 44.359 60.043 49.691 90.00 96.47 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022543 0.000000 0.002558 0.00000 SCALE2 0.000000 0.016655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020253 0.00000