HEADER TRANSFERASE 12-JUL-11 3SV0 TITLE CRYSTAL STRUCTURE OF CASEIN KINASE-1 LIKE PROTEIN IN PLANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I-LIKE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLANT CASEIN KINASE I LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TYPICAL KINASE DOMAIN FOLD, CYTOSOL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.PARK,K.H.DO REVDAT 2 20-MAR-24 3SV0 1 SEQADV REVDAT 1 20-JUN-12 3SV0 0 JRNL AUTH Y.I.PARK,K.H.DO,I.S.KIM,H.H.PARK JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF CASEIN KINASE I-LIKE JRNL TITL 2 PROTEIN FROM RICE JRNL REF PLANT CELL.PHYSIOL. V. 53 304 2012 JRNL REFN ISSN 0032-0781 JRNL PMID 22199373 JRNL DOI 10.1093/PCP/PCR175 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2480 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3337 ; 2.059 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.461 ;22.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;17.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1884 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1455 ; 1.227 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2344 ; 2.119 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 3.277 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 993 ; 5.086 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 30.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM, 5%(V/V) 2-PROPANOL, REMARK 280 10%(W/V) POLYETHYLENE GLYCOL 4000, PH 7.5, EVAPORATION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.41400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.41400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.80200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 296 REMARK 465 GLN A 297 REMARK 465 SER A 298 REMARK 465 GLN A 299 REMARK 465 ILE A 300 REMARK 465 ALA A 301 REMARK 465 SER A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 VAL A 308 REMARK 465 GLY A 309 REMARK 465 HIS A 310 REMARK 465 GLY A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 PRO A 314 REMARK 465 SER A 315 REMARK 465 GLY A 316 REMARK 465 LEU A 317 REMARK 465 ALA A 318 REMARK 465 PRO A 319 REMARK 465 PRO A 320 REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 GLN A 323 REMARK 465 ASN A 324 REMARK 465 ASP A 325 REMARK 465 ARG A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 GLY A 329 REMARK 465 VAL A 330 REMARK 465 ASP A 331 REMARK 465 GLU A 332 REMARK 465 GLY A 333 REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 SER A 336 REMARK 465 GLY A 337 REMARK 465 TRP A 338 REMARK 465 SER A 339 REMARK 465 SER A 340 REMARK 465 MET A 341 REMARK 465 ASP A 342 REMARK 465 ARG A 343 REMARK 465 ARG A 344 REMARK 465 ARG A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 PRO A 348 REMARK 465 PRO A 349 REMARK 465 ILE A 350 REMARK 465 ALA A 351 REMARK 465 SER A 352 REMARK 465 VAL A 353 REMARK 465 GLY A 354 REMARK 465 THR A 355 REMARK 465 LEU A 356 REMARK 465 ALA A 357 REMARK 465 LYS A 358 REMARK 465 GLN A 359 REMARK 465 LYS A 360 REMARK 465 ALA A 361 REMARK 465 PRO A 362 REMARK 465 VAL A 363 REMARK 465 GLY A 364 REMARK 465 ASN A 365 REMARK 465 ASP A 366 REMARK 465 ALA A 367 REMARK 465 SER A 368 REMARK 465 PHE A 369 REMARK 465 SER A 370 REMARK 465 LYS A 371 REMARK 465 GLU A 372 REMARK 465 PRO A 373 REMARK 465 VAL A 374 REMARK 465 ILE A 375 REMARK 465 SER A 376 REMARK 465 ALA A 377 REMARK 465 SER A 378 REMARK 465 ASN A 379 REMARK 465 PHE A 380 REMARK 465 LEU A 381 REMARK 465 GLY A 382 REMARK 465 ARG A 383 REMARK 465 SER A 384 REMARK 465 SER A 385 REMARK 465 GLY A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 ARG A 389 REMARK 465 ARG A 390 REMARK 465 PRO A 391 REMARK 465 ALA A 392 REMARK 465 VAL A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 465 SER A 396 REMARK 465 ARG A 397 REMARK 465 ASP A 398 REMARK 465 VAL A 399 REMARK 465 MET A 400 REMARK 465 PRO A 401 REMARK 465 ILE A 402 REMARK 465 ASP A 403 REMARK 465 THR A 404 REMARK 465 SER A 405 REMARK 465 GLU A 406 REMARK 465 PRO A 407 REMARK 465 SER A 408 REMARK 465 ARG A 409 REMARK 465 THR A 410 REMARK 465 ARG A 411 REMARK 465 ALA A 412 REMARK 465 THR A 413 REMARK 465 ASP A 414 REMARK 465 ALA A 415 REMARK 465 SER A 416 REMARK 465 PRO A 417 REMARK 465 GLY A 418 REMARK 465 ALA A 419 REMARK 465 PHE A 420 REMARK 465 ARG A 421 REMARK 465 ARG A 422 REMARK 465 THR A 423 REMARK 465 SER A 424 REMARK 465 GLY A 425 REMARK 465 PRO A 426 REMARK 465 GLN A 427 REMARK 465 LYS A 428 REMARK 465 SER A 429 REMARK 465 SER A 430 REMARK 465 PRO A 431 REMARK 465 VAL A 432 REMARK 465 ASN A 433 REMARK 465 SER A 434 REMARK 465 ALA A 435 REMARK 465 GLU A 436 REMARK 465 PRO A 437 REMARK 465 LYS A 438 REMARK 465 HIS A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 ALA A 443 REMARK 465 ARG A 444 REMARK 465 HIS A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 ASN A 448 REMARK 465 VAL A 449 REMARK 465 LYS A 450 REMARK 465 ASN A 451 REMARK 465 TYR A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 ALA A 455 REMARK 465 LEU A 456 REMARK 465 LYS A 457 REMARK 465 GLY A 458 REMARK 465 ILE A 459 REMARK 465 GLU A 460 REMARK 465 GLY A 461 REMARK 465 LEU A 462 REMARK 465 ASN A 463 REMARK 465 PHE A 464 REMARK 465 ASP A 465 REMARK 465 GLY A 466 REMARK 465 ASP A 467 REMARK 465 GLU A 468 REMARK 465 ARG A 469 REMARK 465 VAL A 470 REMARK 465 GLN A 471 REMARK 465 TYR A 472 REMARK 465 ALA A 473 REMARK 465 ALA A 474 REMARK 465 ALA A 475 REMARK 465 LEU A 476 REMARK 465 GLU A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU A 173 CE2 TYR A 225 1.88 REMARK 500 O GLU A 169 O HOH A 586 1.95 REMARK 500 OD1 ASP A 132 O HOH A 627 1.99 REMARK 500 CD2 LEU A 173 O THR A 184 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 247 CB GLU A 247 CG 0.332 REMARK 500 GLU A 247 CG GLU A 247 CD -0.119 REMARK 500 TYR A 286 N TYR A 286 CA 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 11 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 128 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 GLU A 247 CB - CG - CD ANGL. DEV. = -20.3 DEGREES REMARK 500 GLU A 247 CG - CD - OE1 ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 271 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 285 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 TYR A 286 C - N - CA ANGL. DEV. = -27.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 128.47 -36.45 REMARK 500 SER A 17 -155.19 -151.69 REMARK 500 THR A 44 157.64 -46.42 REMARK 500 ASP A 149 82.26 65.05 REMARK 500 HIS A 162 19.47 55.48 REMARK 500 TYR A 286 52.68 -115.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 3SV0 A 1 472 UNP Q8LR51 Q8LR51_ORYSJ 1 472 SEQADV 3SV0 ALA A 473 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 ALA A 474 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 ALA A 475 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 LEU A 476 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 GLU A 477 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 478 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 479 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 480 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 481 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 482 UNP Q8LR51 EXPRESSION TAG SEQADV 3SV0 HIS A 483 UNP Q8LR51 EXPRESSION TAG SEQRES 1 A 483 MET GLU PRO ARG VAL GLY ASN LYS PHE ARG LEU GLY ARG SEQRES 2 A 483 LYS ILE GLY SER GLY SER PHE GLY GLU ILE TYR LEU GLY SEQRES 3 A 483 THR ASN ILE GLN THR ASN GLU GLU VAL ALA ILE LYS LEU SEQRES 4 A 483 GLU ASN VAL LYS THR LYS HIS PRO GLN LEU LEU TYR GLU SEQRES 5 A 483 SER LYS ILE TYR ARG ILE LEU GLN GLY GLY THR GLY ILE SEQRES 6 A 483 PRO ASN VAL ARG TRP PHE GLY VAL GLU GLY ASP TYR ASN SEQRES 7 A 483 VAL LEU VAL MET ASP LEU LEU GLY PRO SER LEU GLU ASP SEQRES 8 A 483 LEU PHE ASN PHE CYS SER ARG LYS LEU SER LEU LYS THR SEQRES 9 A 483 VAL LEU MET LEU ALA ASP GLN MET ILE ASN ARG VAL GLU SEQRES 10 A 483 PHE VAL HIS SER LYS SER PHE LEU HIS ARG ASP ILE LYS SEQRES 11 A 483 PRO ASP ASN PHE LEU MET GLY LEU GLY ARG ARG ALA ASN SEQRES 12 A 483 GLN VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS LYS TYR SEQRES 13 A 483 ARG ASP THR SER THR HIS GLN HIS ILE PRO TYR ARG GLU SEQRES 14 A 483 ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SER VAL SEQRES 15 A 483 ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG ASP ASP SEQRES 16 A 483 LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE LEU ARG SEQRES 17 A 483 GLY SER LEU PRO TRP GLN GLY LEU LYS ALA GLY THR LYS SEQRES 18 A 483 LYS GLN LYS TYR GLU LYS ILE SER GLU LYS LYS VAL ALA SEQRES 19 A 483 THR SER ILE GLU ALA LEU CYS ARG GLY TYR PRO THR GLU SEQRES 20 A 483 PHE ALA SER TYR PHE HIS TYR CYS ARG SER LEU ARG PHE SEQRES 21 A 483 ASP ASP LYS PRO ASP TYR SER TYR LEU LYS ARG LEU PHE SEQRES 22 A 483 ARG ASP LEU PHE ILE ARG GLU GLY PHE GLN PHE ASP TYR SEQRES 23 A 483 VAL PHE ASP TRP THR ILE LEU LYS TYR GLN GLN SER GLN SEQRES 24 A 483 ILE ALA SER ALA PRO PRO ARG ALA VAL GLY HIS GLY ALA SEQRES 25 A 483 GLY PRO SER GLY LEU ALA PRO PRO ALA LEU GLN ASN ASP SEQRES 26 A 483 ARG GLN SER GLY VAL ASP GLU GLY ARG THR SER GLY TRP SEQRES 27 A 483 SER SER MET ASP ARG ARG ARG ALA PRO PRO PRO ILE ALA SEQRES 28 A 483 SER VAL GLY THR LEU ALA LYS GLN LYS ALA PRO VAL GLY SEQRES 29 A 483 ASN ASP ALA SER PHE SER LYS GLU PRO VAL ILE SER ALA SEQRES 30 A 483 SER ASN PHE LEU GLY ARG SER SER GLY SER SER ARG ARG SEQRES 31 A 483 PRO ALA VAL SER SER SER ARG ASP VAL MET PRO ILE ASP SEQRES 32 A 483 THR SER GLU PRO SER ARG THR ARG ALA THR ASP ALA SER SEQRES 33 A 483 PRO GLY ALA PHE ARG ARG THR SER GLY PRO GLN LYS SER SEQRES 34 A 483 SER PRO VAL ASN SER ALA GLU PRO LYS HIS SER SER SER SEQRES 35 A 483 ALA ARG HIS SER SER ASN VAL LYS ASN TYR GLU SER ALA SEQRES 36 A 483 LEU LYS GLY ILE GLU GLY LEU ASN PHE ASP GLY ASP GLU SEQRES 37 A 483 ARG VAL GLN TYR ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 38 A 483 HIS HIS FORMUL 2 HOH *182(H2 O) HELIX 1 1 GLN A 48 LEU A 59 1 12 HELIX 2 2 SER A 88 CYS A 96 1 9 HELIX 3 3 SER A 101 LYS A 122 1 22 HELIX 4 4 LYS A 130 ASP A 132 5 3 HELIX 5 5 LEU A 138 ALA A 142 5 5 HELIX 6 6 SER A 181 LEU A 186 1 6 HELIX 7 7 SER A 191 GLY A 209 1 19 HELIX 8 8 THR A 220 THR A 235 1 16 HELIX 9 9 SER A 236 ARG A 242 1 7 HELIX 10 10 PRO A 245 SER A 257 1 13 HELIX 11 11 ASP A 265 GLU A 280 1 16 HELIX 12 12 PHE A 288 LYS A 294 1 7 SHEET 1 A 4 ARG A 4 VAL A 5 0 SHEET 2 A 4 PHE A 9 ARG A 10 -1 O PHE A 9 N VAL A 5 SHEET 3 A 4 GLU A 22 ASN A 28 -1 O THR A 27 N ARG A 10 SHEET 4 A 4 GLY A 16 SER A 17 -1 N GLY A 16 O ILE A 23 SHEET 1 B 6 ARG A 4 VAL A 5 0 SHEET 2 B 6 PHE A 9 ARG A 10 -1 O PHE A 9 N VAL A 5 SHEET 3 B 6 GLU A 22 ASN A 28 -1 O THR A 27 N ARG A 10 SHEET 4 B 6 GLU A 34 ASN A 41 -1 O ILE A 37 N TYR A 24 SHEET 5 B 6 TYR A 77 ASP A 83 -1 O MET A 82 N ALA A 36 SHEET 6 B 6 VAL A 68 GLU A 74 -1 N TRP A 70 O VAL A 81 SHEET 1 C 2 PHE A 124 LEU A 125 0 SHEET 2 C 2 LYS A 154 LYS A 155 -1 O LYS A 154 N LEU A 125 SHEET 1 D 2 PHE A 134 MET A 136 0 SHEET 2 D 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 CRYST1 108.828 69.604 55.849 90.00 109.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009189 0.000000 0.003249 0.00000 SCALE2 0.000000 0.014367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018992 0.00000