HEADER TRANSCRIPTION/TRANSCRIPTION REGULATOR 19-JUL-11 3T03 TITLE CRYSTAL STRUCTURE OF PPAR GAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH TITLE 2 A NOVEL PARTIAL AGONIST GQ-16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 234-505; COMPND 5 SYNONYM: PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: UNP RESIDUES 683-700; COMPND 10 SYNONYM: NCOA-1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74, BHLHE74, COMPND 11 PROTEIN HIN-2, RIP160, RENAL CARCINOMA ANTIGEN NY-REN-52, STEROID COMPND 12 RECEPTOR COACTIVATOR 1, SRC-1; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DRUG COMPLEX, THIAZOLIDINEDIONES, LIGAND BINDING PROTEIN, KEYWDS 2 TRANSCRIPTION FACTOR, NUCLEUS RECEPTOR, TRANSCRIPTION-TRANSCRIPTION KEYWDS 3 REGULATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.RAJAGOPALAN,P.WEBB,J.D.BAXTER,R.G.BRENNAN,K.J.PHILLIPS REVDAT 3 13-SEP-23 3T03 1 REMARK SEQADV REVDAT 2 19-JUN-13 3T03 1 JRNL REVDAT 1 23-MAY-12 3T03 0 JRNL AUTH A.A.AMATO,S.RAJAGOPALAN,J.Z.LIN,B.M.CARVALHO,A.C.FIGUEIRA, JRNL AUTH 2 J.LU,S.D.AYERS,M.MOTTIN,R.L.SILVEIRA,P.C.SOUZA,R.H.MOURAO, JRNL AUTH 3 M.J.SAAD,M.TOGASHI,L.A.SIMEONI,D.S.ABDALLA,M.S.SKAF, JRNL AUTH 4 I.POLIKPARPOV,M.C.LIMA,S.L.GALDINO,R.G.BRENNAN,J.D.BAXTER, JRNL AUTH 5 I.R.PITTA,P.WEBB,K.J.PHILLIPS,F.A.NEVES JRNL TITL GQ-16, A NOVEL PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR JRNL TITL 2 (PPAR GAMMA) LIGAND, PROMOTES INSULIN SENSITIZATION WITHOUT JRNL TITL 3 WEIGHT GAIN. JRNL REF J.BIOL.CHEM. V. 287 28169 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22584573 JRNL DOI 10.1074/JBC.M111.332106 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_788) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 39920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0521 - 4.5227 0.97 3777 411 0.1926 0.2131 REMARK 3 2 4.5227 - 3.5904 0.98 3659 382 0.1638 0.2174 REMARK 3 3 3.5904 - 3.1367 0.99 3629 401 0.2123 0.2422 REMARK 3 4 3.1367 - 2.8500 0.98 3603 405 0.2325 0.2906 REMARK 3 5 2.8500 - 2.6458 0.99 3577 416 0.2210 0.2498 REMARK 3 6 2.6458 - 2.4898 0.98 3609 383 0.2282 0.2680 REMARK 3 7 2.4898 - 2.3651 0.98 3549 413 0.2293 0.2827 REMARK 3 8 2.3651 - 2.2622 0.98 3561 378 0.2613 0.2985 REMARK 3 9 2.2622 - 2.1751 0.97 3461 429 0.2915 0.3224 REMARK 3 10 2.1751 - 2.1000 0.97 3478 399 0.2977 0.3224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 46.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.90770 REMARK 3 B22 (A**2) : 20.27440 REMARK 3 B33 (A**2) : -7.99980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4374 REMARK 3 ANGLE : 1.317 5900 REMARK 3 CHIRALITY : 0.074 682 REMARK 3 PLANARITY : 0.005 741 REMARK 3 DIHEDRAL : 15.725 1644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FUR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.6, 30%(W/V) PEG 4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.49000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.49000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 222 REMARK 465 GLY A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 GLY A 233 REMARK 465 PRO A 234 REMARK 465 GLU A 235 REMARK 465 SER A 236 REMARK 465 ALA A 237 REMARK 465 THR A 296 REMARK 465 PRO A 297 REMARK 465 LEU A 298 REMARK 465 MET B 222 REMARK 465 GLY B 223 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 GLY B 232 REMARK 465 GLY B 233 REMARK 465 PRO B 234 REMARK 465 GLU B 235 REMARK 465 SER B 236 REMARK 465 ALA B 237 REMARK 465 ASP B 288 REMARK 465 LYS B 289 REMARK 465 ILE B 290 REMARK 465 LYS B 291 REMARK 465 PHE B 292 REMARK 465 LYS B 293 REMARK 465 HIS B 294 REMARK 465 ILE B 295 REMARK 465 THR B 296 REMARK 465 PRO B 297 REMARK 465 LEU B 298 REMARK 465 GLN B 299 REMARK 465 GLU B 300 REMARK 465 GLN B 301 REMARK 465 SER B 302 REMARK 465 THR B 489 REMARK 465 ASP B 490 REMARK 465 MET B 491 REMARK 465 SER B 492 REMARK 465 LEU C 683 REMARK 465 THR C 684 REMARK 465 GLU C 685 REMARK 465 ARG C 686 REMARK 465 GLN C 695 REMARK 465 GLU C 696 REMARK 465 GLY C 697 REMARK 465 SER C 698 REMARK 465 PRO C 699 REMARK 465 SER C 700 REMARK 465 LEU D 683 REMARK 465 THR D 684 REMARK 465 GLU D 685 REMARK 465 ARG D 686 REMARK 465 SER D 700 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 HIS A 294 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 295 CG1 CG2 CD1 REMARK 470 GLN A 299 CG CD OE1 NE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 GLU B 371 CG CD OE1 OE2 REMARK 470 LYS B 450 CD CE NZ REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 LYS B 486 CG CD CE NZ REMARK 470 THR B 487 OG1 CG2 REMARK 470 GLU B 488 CG CD OE1 OE2 REMARK 470 LEU B 493 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 170 O HOH A 521 1.81 REMARK 500 O HOH B 216 O HOH B 508 1.86 REMARK 500 OD1 ASP B 436 O HOH B 127 1.87 REMARK 500 OE2 GLU A 393 O HOH A 189 1.88 REMARK 500 O SER A 457 O HOH A 201 1.90 REMARK 500 O HOH B 545 O HOH D 275 1.93 REMARK 500 OE1 GLU B 323 O HOH B 166 1.93 REMARK 500 O HOH B 173 O HOH B 544 1.99 REMARK 500 O HOH B 517 O HOH B 523 2.00 REMARK 500 O HOH A 182 O HOH A 188 2.00 REMARK 500 OD1 ASP A 436 O HOH A 128 2.01 REMARK 500 O HOH A 176 O HOH A 177 2.03 REMARK 500 O HOH A 159 O HOH A 163 2.03 REMARK 500 O HOH A 121 O HOH A 126 2.04 REMARK 500 O HOH A 548 O HOH A 550 2.05 REMARK 500 O HOH B 204 O HOH B 515 2.08 REMARK 500 O GLY A 312 O HOH A 197 2.10 REMARK 500 N HIS D 687 O HOH D 234 2.11 REMARK 500 O HOH A 509 O HOH A 510 2.11 REMARK 500 O HOH A 139 O HOH A 147 2.11 REMARK 500 N GLN B 482 O HOH B 132 2.12 REMARK 500 O HOH A 516 O HOH A 517 2.12 REMARK 500 O HOH A 509 O HOH A 511 2.12 REMARK 500 O HOH B 53 O HOH B 76 2.12 REMARK 500 O HOH B 203 O HOH B 530 2.13 REMARK 500 O HOH B 196 O HOH B 212 2.14 REMARK 500 OE1 GLU B 352 O HOH B 515 2.14 REMARK 500 O HOH B 96 O HOH B 508 2.16 REMARK 500 OE2 GLU A 393 O HOH A 546 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 538 O HOH B 541 4465 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 268 44.88 -75.95 REMARK 500 LYS A 293 -29.43 -141.33 REMARK 500 HIS A 294 -156.89 -143.56 REMARK 500 SER A 370 70.29 32.39 REMARK 500 SER A 456 73.25 -111.88 REMARK 500 LYS B 268 58.70 -91.12 REMARK 500 SER B 457 172.12 -59.82 REMARK 500 GLN B 458 -1.56 62.42 REMARK 500 LYS B 486 38.29 -85.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3T0 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3T0 B 1 DBREF 3T03 A 234 505 UNP P37231 PPARG_HUMAN 234 505 DBREF 3T03 B 234 505 UNP P37231 PPARG_HUMAN 234 505 DBREF 3T03 C 683 700 UNP Q15788 NCOA1_HUMAN 683 700 DBREF 3T03 D 683 700 UNP Q15788 NCOA1_HUMAN 683 700 SEQADV 3T03 MET A 222 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY A 223 UNP P37231 EXPRESSION TAG SEQADV 3T03 SER A 224 UNP P37231 EXPRESSION TAG SEQADV 3T03 SER A 225 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 226 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 227 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 228 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 229 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 230 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS A 231 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY A 232 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY A 233 UNP P37231 EXPRESSION TAG SEQADV 3T03 MET B 222 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY B 223 UNP P37231 EXPRESSION TAG SEQADV 3T03 SER B 224 UNP P37231 EXPRESSION TAG SEQADV 3T03 SER B 225 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 226 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 227 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 228 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 229 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 230 UNP P37231 EXPRESSION TAG SEQADV 3T03 HIS B 231 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY B 232 UNP P37231 EXPRESSION TAG SEQADV 3T03 GLY B 233 UNP P37231 EXPRESSION TAG SEQRES 1 A 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY GLY PRO SEQRES 2 A 284 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 3 A 284 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 4 A 284 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 5 A 284 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 6 A 284 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 7 A 284 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 8 A 284 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 9 A 284 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 10 A 284 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 11 A 284 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 12 A 284 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 13 A 284 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 14 A 284 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 15 A 284 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 16 A 284 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 17 A 284 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 18 A 284 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 19 A 284 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 20 A 284 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 21 A 284 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 22 A 284 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 284 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY GLY PRO SEQRES 2 B 284 GLU SER ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR SEQRES 3 B 284 ASP SER TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS SEQRES 4 B 284 ALA ARG ALA ILE LEU THR GLY LYS THR THR ASP LYS SER SEQRES 5 B 284 PRO PHE VAL ILE TYR ASP MET ASN SER LEU MET MET GLY SEQRES 6 B 284 GLU ASP LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN SEQRES 7 B 284 GLU GLN SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY SEQRES 8 B 284 CYS GLN PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR SEQRES 9 B 284 GLU TYR ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP SEQRES 10 B 284 LEU ASN ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS SEQRES 11 B 284 GLU ILE ILE TYR THR MET LEU ALA SER LEU MET ASN LYS SEQRES 12 B 284 ASP GLY VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR SEQRES 13 B 284 ARG GLU PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP SEQRES 14 B 284 PHE MET GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN SEQRES 15 B 284 ALA LEU GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE SEQRES 16 B 284 ALA VAL ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU SEQRES 17 B 284 ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU SEQRES 18 B 284 GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SEQRES 19 B 284 SER SER GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR SEQRES 20 B 284 ASP LEU ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU SEQRES 21 B 284 GLN VAL ILE LYS LYS THR GLU THR ASP MET SER LEU HIS SEQRES 22 B 284 PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 C 18 LEU THR GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 2 C 18 GLU GLY SER PRO SER SEQRES 1 D 18 LEU THR GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 2 D 18 GLU GLY SER PRO SER HET 3T0 A 2 25 HET 3T0 B 1 25 HETNAM 3T0 (5Z)-5-(5-BROMO-2-METHOXYBENZYLIDENE)-3-(4- HETNAM 2 3T0 METHYLBENZYL)-1,3-THIAZOLIDINE-2,4-DIONE FORMUL 5 3T0 2(C19 H16 BR N O3 S) FORMUL 7 HOH *316(H2 O) HELIX 1 1 ASP A 238 PHE A 254 1 17 HELIX 2 2 THR A 257 THR A 266 1 10 HELIX 3 3 ASP A 279 LYS A 291 1 13 HELIX 4 4 GLU A 304 ILE A 331 1 28 HELIX 5 5 GLY A 333 LEU A 337 5 5 HELIX 6 6 ASP A 338 LEU A 361 1 24 HELIX 7 7 SER A 370 GLY A 372 5 3 HELIX 8 8 ARG A 378 LEU A 384 1 7 HELIX 9 9 MET A 392 ALA A 404 1 13 HELIX 10 10 ASP A 408 LEU A 421 1 14 HELIX 11 11 ASN A 430 HIS A 453 1 24 HELIX 12 12 GLN A 458 GLU A 488 1 31 HELIX 13 13 HIS A 494 LYS A 502 1 9 HELIX 14 14 ASP B 238 PHE B 254 1 17 HELIX 15 15 THR B 257 THR B 266 1 10 HELIX 16 16 ASP B 279 GLY B 286 1 8 HELIX 17 17 GLU B 304 SER B 330 1 27 HELIX 18 18 ASP B 338 SER B 360 1 23 HELIX 19 19 ARG B 378 SER B 383 1 6 HELIX 20 20 MET B 392 ALA B 404 1 13 HELIX 21 21 ASP B 408 LEU B 421 1 14 HELIX 22 22 ASN B 430 HIS B 453 1 24 HELIX 23 23 GLN B 458 VAL B 483 1 26 HELIX 24 24 HIS B 494 LYS B 502 1 9 HELIX 25 25 HIS C 687 LEU C 694 1 8 HELIX 26 26 HIS D 687 GLY D 697 1 11 SHEET 1 A 4 PHE A 275 ILE A 277 0 SHEET 2 A 4 GLY A 374 THR A 377 1 O PHE A 375 N ILE A 277 SHEET 3 A 4 GLY A 366 ILE A 369 -1 N VAL A 367 O MET A 376 SHEET 4 A 4 MET A 362 ASN A 363 -1 N ASN A 363 O GLY A 366 SHEET 1 B 4 PHE B 275 ILE B 277 0 SHEET 2 B 4 GLY B 374 THR B 377 1 O PHE B 375 N ILE B 277 SHEET 3 B 4 GLY B 366 ILE B 369 -1 N ILE B 369 O GLY B 374 SHEET 4 B 4 MET B 362 ASN B 363 -1 N ASN B 363 O GLY B 366 CISPEP 1 LYS A 386 PRO A 387 0 5.46 CISPEP 2 LYS B 386 PRO B 387 0 -4.56 CISPEP 3 SER D 698 PRO D 699 0 0.48 SITE 1 AC1 15 HOH A 200 HOH A 211 ILE A 309 CYS A 313 SITE 2 AC1 15 ARG A 316 SER A 317 ALA A 320 ILE A 354 SITE 3 AC1 15 TYR A 355 LEU A 361 ILE A 369 MET A 376 SITE 4 AC1 15 LEU A 381 PHE A 391 MET A 392 SITE 1 AC2 14 ILE B 309 CYS B 313 ARG B 316 SER B 317 SITE 2 AC2 14 ALA B 320 ILE B 354 LEU B 358 LEU B 361 SITE 3 AC2 14 ILE B 369 MET B 376 LEU B 381 PHE B 391 SITE 4 AC2 14 MET B 392 LYS B 395 CRYST1 83.690 84.390 96.980 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010311 0.00000