HEADER HYDROLASE 22-JUL-11 3T2I TITLE TETRAGONAL THERMOLYSIN IN THE PRESENCE OF SARCOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS ALPHA/BETA, ZINC PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CAHN,N.S.HTI LAR SENG,D.JUERS REVDAT 4 13-SEP-23 3T2I 1 REMARK LINK REVDAT 3 04-FEB-15 3T2I 1 HETATM REVDAT 2 11-JAN-12 3T2I 1 JRNL REVDAT 1 28-DEC-11 3T2I 0 JRNL AUTH H.MARSHALL,M.VENKAT,N.S.HTI LAR SENG,J.CAHN,D.H.JUERS JRNL TITL THE USE OF TRIMETHYLAMINE N-OXIDE AS A PRIMARY PRECIPITATING JRNL TITL 2 AGENT AND RELATED METHYLAMINE OSMOLYTES AS CRYOPROTECTIVE JRNL TITL 3 AGENTS FOR MACROMOLECULAR CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 69 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22194335 JRNL DOI 10.1107/S0907444911050360 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2056 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2508 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3410 ; 1.735 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 5.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;34.136 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;12.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.254 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1990 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1569 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2498 ; 1.625 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 939 ; 2.913 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 912 ; 4.407 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.221 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1L3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MG/ML PROTEIN IN 45% DMSO, MIXING REMARK 280 SOLUTION 45% DMSO, 1 M NACL, 1 M ZNCL2, 0.1 M MES PH 6.0, WELL REMARK 280 30% SATURATED AMSO4, SOAK DONE IN 4 M SARCOSINE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.93750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.17300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.17300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.46875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.17300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.17300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.40625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.17300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.17300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.46875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.17300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.17300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.40625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.93750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 316 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CL CL E 324 O HOH E 499 1.70 REMARK 500 O HOH E 587 O HOH E 588 1.84 REMARK 500 NE2 HIS E 231 O HOH E 499 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 471 O HOH E 579 5555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL E 256 CB VAL E 256 CG2 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 47 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR E 26 -58.64 70.45 REMARK 500 SER E 92 -173.70 60.64 REMARK 500 SER E 107 -162.51 57.40 REMARK 500 ASN E 111 54.41 -92.29 REMARK 500 THR E 152 -97.95 -127.49 REMARK 500 ASN E 159 -142.02 56.78 REMARK 500 LYS E 182 -61.46 -93.93 REMARK 500 THR E 194 75.77 42.32 REMARK 500 ASP E 207 78.05 -150.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.2 REMARK 620 3 ASP E 59 OD1 124.7 72.6 REMARK 620 4 GLN E 61 O 94.6 91.1 89.6 REMARK 620 5 HOH E 447 O 80.4 130.6 153.1 78.0 REMARK 620 6 HOH E 463 O 158.8 147.9 75.5 91.8 81.2 REMARK 620 7 HOH E 467 O 86.8 89.3 89.1 178.5 102.9 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 317 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 81.0 REMARK 620 3 GLU E 177 OE2 130.2 49.3 REMARK 620 4 ASP E 185 OD1 159.9 118.9 69.6 REMARK 620 5 GLU E 187 O 83.3 150.6 141.5 79.9 REMARK 620 6 GLU E 190 OE1 86.4 126.9 118.1 79.0 76.4 REMARK 620 7 GLU E 190 OE2 102.0 80.1 70.1 79.9 127.7 52.5 REMARK 620 8 HOH E 414 O 98.8 81.9 79.8 87.9 76.1 151.2 149.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 105.1 REMARK 620 3 GLU E 166 OE2 121.9 94.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 93.9 REMARK 620 3 ASP E 185 OD2 89.8 90.1 REMARK 620 4 GLU E 190 OE2 93.1 172.7 91.8 REMARK 620 5 HOH E 421 O 92.5 85.4 175.1 92.4 REMARK 620 6 HOH E 457 O 174.4 80.7 92.0 92.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 OG1 74.1 REMARK 620 3 THR E 194 O 73.0 64.0 REMARK 620 4 ILE E 197 O 155.6 102.8 83.8 REMARK 620 5 ASP E 200 OD1 123.1 77.0 131.8 78.2 REMARK 620 6 HOH E 422 O 86.8 125.9 154.4 113.0 72.4 REMARK 620 7 HOH E 462 O 93.4 150.7 87.2 77.6 130.5 78.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 326 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 211 O REMARK 620 2 HOH E 472 O 100.2 REMARK 620 3 HOH E 503 O 91.9 90.5 REMARK 620 4 HOH E 518 O 93.6 96.4 170.3 REMARK 620 5 HOH E 519 O 77.9 177.8 88.5 84.8 REMARK 620 6 HOH E 572 O 160.8 80.7 68.9 105.4 100.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 250 ND1 REMARK 620 2 HOH E 401 O 104.6 REMARK 620 3 HOH E 402 O 100.0 115.3 REMARK 620 4 HOH E 403 O 100.4 128.4 103.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAR E 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAR E 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAR E 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 2012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T25 RELATED DB: PDB REMARK 900 TMAO-GROWN ORTHORHOMBIC TRYPSIN (BOVINE) REMARK 900 RELATED ID: 3T26 RELATED DB: PDB REMARK 900 ORTHORHOMBIC TRYPSIN (BOVINE) IN THE PRESENCE OF SARCOSINE REMARK 900 RELATED ID: 3T27 RELATED DB: PDB REMARK 900 ORTHORHOMBIC TRYPSIN (BOVINE) IN THE PRESENCE OF BETAINE REMARK 900 RELATED ID: 3T28 RELATED DB: PDB REMARK 900 TMAO-GROWN TRYPSIN (BOVINE)-PREVIOUSLY UNREPORTED TETRAGONAL REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 3T29 RELATED DB: PDB REMARK 900 TMAO-GROWN TRIGONAL TRYPSIN (BOVINE) REMARK 900 RELATED ID: 3T2A RELATED DB: PDB REMARK 900 TMAO-GROWN CUBIC INSULIN (PORCINE) REMARK 900 RELATED ID: 3T2H RELATED DB: PDB REMARK 900 TETRAGONAL THERMOLYSIN IN THE PRESENCE OF TMAO REMARK 900 RELATED ID: 3T2J RELATED DB: PDB REMARK 900 TETRAGONAL THERMOLYSIN IN THE PRESENCE OF BETAINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N269D, Q351E CONFLICT IN UNP ENTRY P00800 DBREF 3T2I E 1 316 UNP P00800 THER_BACTH 233 548 SEQADV 3T2I ASP E 37 UNP P00800 ASN 269 SEE REMARK 999 SEQADV 3T2I GLU E 119 UNP P00800 GLN 351 SEE REMARK 999 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E 317 1 HET CA E 318 1 HET CA E 319 1 HET CA E 320 1 HET ZN E 321 1 HET ZN E 322 1 HET CL E 323 1 HET CL E 324 1 HET CL E 325 1 HET NA E 326 1 HET SAR E2001 6 HET SAR E2002 6 HET SAR E2003 6 HET DMS E2011 4 HET DMS E2012 4 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM SAR SARCOSINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN 2(ZN 2+) FORMUL 8 CL 3(CL 1-) FORMUL 11 NA NA 1+ FORMUL 12 SAR 3(C3 H7 N O2) FORMUL 15 DMS 2(C2 H6 O S) FORMUL 17 HOH *194(H2 O) HELIX 1 1 ALA E 64 TYR E 66 5 3 HELIX 2 2 ASP E 67 ASN E 89 1 23 HELIX 3 3 PRO E 132 GLY E 135 5 4 HELIX 4 4 GLY E 136 TYR E 151 1 16 HELIX 5 5 GLN E 158 ASN E 181 1 24 HELIX 6 6 ASP E 207 GLY E 212 5 6 HELIX 7 7 HIS E 216 ARG E 220 5 5 HELIX 8 8 THR E 224 VAL E 230 1 7 HELIX 9 9 ASN E 233 GLY E 247 1 15 HELIX 10 10 GLY E 259 TYR E 274 1 16 HELIX 11 11 ASN E 280 GLY E 297 1 18 HELIX 12 12 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 TYR E 106 1 O SER E 102 N TYR E 42 SHEET 4 C 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 248 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 319 1555 1555 2.33 LINK OD2 ASP E 57 CA CA E 319 1555 1555 2.50 LINK OD1 ASP E 59 CA CA E 319 1555 1555 2.28 LINK O GLN E 61 CA CA E 319 1555 1555 2.29 LINK OD2 ASP E 138 CA CA E 317 1555 1555 2.39 LINK NE2 HIS E 142 ZN ZN E 321 1555 1555 2.04 LINK NE2 HIS E 146 ZN ZN E 321 1555 1555 2.03 LINK OE2 GLU E 166 ZN ZN E 321 1555 1555 1.92 LINK OE1 GLU E 177 CA CA E 317 1555 1555 2.45 LINK OE2 GLU E 177 CA CA E 317 1555 1555 2.72 LINK OE2 GLU E 177 CA CA E 318 1555 1555 2.25 LINK O ASN E 183 CA CA E 318 1555 1555 2.33 LINK OD1 ASP E 185 CA CA E 317 1555 1555 2.44 LINK OD2 ASP E 185 CA CA E 318 1555 1555 2.09 LINK O GLU E 187 CA CA E 317 1555 1555 2.27 LINK OE1 GLU E 190 CA CA E 317 1555 1555 2.47 LINK OE2 GLU E 190 CA CA E 317 1555 1555 2.57 LINK OE2 GLU E 190 CA CA E 318 1555 1555 1.93 LINK O TYR E 193 CA CA E 320 1555 1555 2.43 LINK OG1 THR E 194 CA CA E 320 1555 1555 2.35 LINK O THR E 194 CA CA E 320 1555 1555 2.38 LINK O ILE E 197 CA CA E 320 1555 1555 2.31 LINK OD1 ASP E 200 CA CA E 320 1555 1555 2.34 LINK O TYR E 211 NA NA E 326 1555 1555 2.52 LINK ND1 HIS E 250 ZN ZN E 322 1555 1555 2.22 LINK CA CA E 317 O HOH E 414 1555 1555 2.47 LINK CA CA E 318 O HOH E 421 1555 1555 2.01 LINK CA CA E 318 O HOH E 457 1555 1555 2.13 LINK CA CA E 319 O HOH E 447 1555 1555 2.31 LINK CA CA E 319 O HOH E 463 1555 1555 2.61 LINK CA CA E 319 O HOH E 467 1555 1555 2.29 LINK CA CA E 320 O HOH E 422 1555 1555 2.42 LINK CA CA E 320 O HOH E 462 1555 1555 2.13 LINK ZN ZN E 322 O HOH E 401 1555 1555 2.39 LINK ZN ZN E 322 O HOH E 402 1555 1555 2.66 LINK ZN ZN E 322 O HOH E 403 1555 1555 2.57 LINK NA NA E 326 O HOH E 472 1555 1555 2.37 LINK NA NA E 326 O HOH E 503 1555 1555 2.41 LINK NA NA E 326 O HOH E 518 1555 1555 2.27 LINK NA NA E 326 O HOH E 519 1555 1555 2.40 LINK NA NA E 326 O HOH E 572 1555 1555 2.57 CISPEP 1 LEU E 50 PRO E 51 0 6.98 SITE 1 AC1 7 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 7 GLU E 190 CA E 318 HOH E 414 SITE 1 AC2 7 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 7 CA E 317 HOH E 421 HOH E 457 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 447 SITE 2 AC3 6 HOH E 463 HOH E 467 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 422 HOH E 462 SITE 1 AC5 4 HIS E 142 HIS E 146 GLU E 166 CL E 324 SITE 1 AC6 4 HIS E 250 HOH E 401 HOH E 402 HOH E 403 SITE 1 AC7 5 GLY E 12 LEU E 14 GLY E 15 ASP E 16 SITE 2 AC7 5 LYS E 18 SITE 1 AC8 8 HIS E 142 GLU E 143 HIS E 146 TYR E 157 SITE 2 AC8 8 GLU E 166 HIS E 231 ZN E 321 HOH E 499 SITE 1 AC9 2 ARG E 285 HOH E 517 SITE 1 BC1 6 TYR E 211 HOH E 472 HOH E 503 HOH E 518 SITE 2 BC1 6 HOH E 519 HOH E 572 SITE 1 BC2 5 ALA E 209 LYS E 210 TYR E 211 GLY E 212 SITE 2 BC2 5 HOH E 519 SITE 1 BC3 5 ASN E 19 ASN E 21 ARG E 35 HOH E 419 SITE 2 BC3 5 HOH E 456 SITE 1 BC4 5 TYR E 179 ALA E 180 ASN E 181 ARG E 269 SITE 2 BC4 5 HOH E 584 SITE 1 BC5 4 TYR E 66 HIS E 216 HOH E 543 HOH E 578 SITE 1 BC6 2 SER E 206 TYR E 242 CRYST1 96.346 96.346 105.875 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010379 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009445 0.00000