data_3T4G # _entry.id 3T4G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3T4G pdb_00003t4g 10.2210/pdb3t4g/pdb RCSB RCSB067024 ? ? WWPDB D_1000067024 ? ? # _pdbx_database_status.entry_id 3T4G _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-07-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, M.' 1 'Liu, C.' 2 'Cheng, P.N.' 3 'Eisenberg, D.' 4 'Nowick, J.S.' 5 # _citation.id primary _citation.title 'Amyloid beta-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity.' _citation.journal_abbrev 'Nat Chem' _citation.journal_volume 4 _citation.page_first 927 _citation.page_last 933 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1755-4330 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23089868 _citation.pdbx_database_id_DOI 10.1038/nchem.1433 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cheng, P.N.' 1 ? primary 'Liu, C.' 2 ? primary 'Zhao, M.' 3 ? primary 'Eisenberg, D.' 4 ? primary 'Nowick, J.S.' 5 ? # _cell.entry_id 3T4G _cell.length_a 44.390 _cell.length_b 44.390 _cell.length_c 44.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T4G _symmetry.space_group_name_H-M 'P 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cyclic pseudo-peptide (ORN)AIIGLMV(ORN)KF(HAO)(4BF)K' 1811.035 2 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)AIIGLMV(ORN)KF(HAO)(4BF)K' _entity_poly.pdbx_seq_one_letter_code_can AAIIGLMVAKFXYK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 ALA n 1 3 ILE n 1 4 ILE n 1 5 GLY n 1 6 LEU n 1 7 MET n 1 8 VAL n 1 9 ORN n 1 10 LYS n 1 11 PHE n 1 12 HAO n 1 13 4BF n 1 14 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic construct' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3T4G _struct_ref.pdbx_db_accession 3T4G _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AAIIGLMVAKFXYK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3T4G A 1 ? 14 ? 3T4G 0 ? 13 ? 0 13 2 1 3T4G B 1 ? 14 ? 3T4G 0 ? 13 ? 0 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BF 'L-peptide linking' n 4-BROMO-L-PHENYLALANINE P-BROMO-L-PHENYLALANINE 'C9 H10 Br N O2' 244.085 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HAO peptide-like . '{[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid' ? 'C10 H11 N3 O5' 253.211 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3T4G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '35% (v/v) 2-methyl-2,4-pentanediol, Na/K phosphate buffer pH6.2, pH 7.0, vapor diffusion, hanging drop, temperature 290K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-03-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol SIRAS _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9196 1.0 2 1.8443 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9196, 1.8443' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3T4G _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.700 _reflns.number_obs 3384 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.740 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.700 1.740 95.900 0.513 ? 3.070 ? ? ? ? ? ? ? 1 2 1.740 1.790 99.600 0.547 ? 3.730 ? ? ? ? ? ? ? 1 3 1.790 1.840 100.000 0.394 ? 5.580 ? ? ? ? ? ? ? 1 4 1.840 1.900 99.100 0.315 ? 7.120 ? ? ? ? ? ? ? 1 5 1.900 1.960 100.0 0.216 ? 9.790 ? ? ? ? ? ? ? 1 6 1.960 2.030 100.000 0.192 ? 11.440 ? ? ? ? ? ? ? 1 7 2.030 2.100 100.000 0.137 ? 16.160 ? ? ? ? ? ? ? 1 8 2.100 2.190 99.500 0.109 ? 20.400 ? ? ? ? ? ? ? 1 9 2.190 2.290 100.0 0.096 ? 21.760 ? ? ? ? ? ? ? 1 10 2.290 2.400 100.000 0.110 ? 19.870 ? ? ? ? ? ? ? 1 11 2.400 2.530 100.000 0.056 ? 37.630 ? ? ? ? ? ? ? 1 12 2.530 2.680 100.000 0.057 ? 33.510 ? ? ? ? ? ? ? 1 13 2.680 2.870 100.000 0.046 ? 44.380 ? ? ? ? ? ? ? 1 14 2.870 3.100 100.000 0.033 ? 59.290 ? ? ? ? ? ? ? 1 15 3.100 3.390 100.000 0.027 ? 64.670 ? ? ? ? ? ? ? 1 16 3.390 3.790 98.400 0.020 ? 76.620 ? ? ? ? ? ? ? 1 17 3.790 4.380 100.0 0.017 ? 92.620 ? ? ? ? ? ? ? 1 18 4.380 5.360 100.000 0.017 ? 93.460 ? ? ? ? ? ? ? 1 19 5.360 7.580 100.000 0.016 ? 87.140 ? ? ? ? ? ? ? 1 20 7.580 ? 89.800 0.015 ? 84.590 ? ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3T4G _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3047 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.12 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.24031 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23629 _refine.ls_R_factor_R_free 0.27424 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 326 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.300 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 28.374 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.035 _refine.pdbx_overall_ESU_R_Free 0.031 _refine.overall_SU_ML 0.072 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.277 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 240 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 280 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 18.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 295 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 214 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.729 2.357 ? 398 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.901 3.015 ? 493 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.272 5.000 ? 14 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 7.373 20.000 ? 2 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.334 15.000 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 39 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.026 0.021 ? 254 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.016 0.021 ? 50 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.413 1.500 ? 126 'X-RAY DIFFRACTION' ? r_mcbond_other 0.744 1.500 ? 66 'X-RAY DIFFRACTION' ? r_mcangle_it 3.811 2.000 ? 207 'X-RAY DIFFRACTION' ? r_scbond_it 5.207 3.000 ? 169 'X-RAY DIFFRACTION' ? r_scangle_it 7.000 4.500 ? 191 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.699 _refine_ls_shell.d_res_low 1.743 _refine_ls_shell.number_reflns_R_work 220 _refine_ls_shell.R_factor_R_work 0.241 _refine_ls_shell.percent_reflns_obs 98.80 _refine_ls_shell.R_factor_R_free 0.377 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3T4G _struct.title ;AIIGLMV segment from Alzheimer's Amyloid-Beta displayed on 54-membered macrocycle scaffold ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T4G _struct_keywords.text 'amyloid-related, macrocycle, hao, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ORN 1 C ? ? ? 1_555 A ALA 2 N ? ? A ORN 0 A ALA 1 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A LYS 14 C ? ? A ORN 0 A LYS 13 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A VAL 8 C ? ? ? 1_555 A ORN 9 NE ? ? A VAL 7 A ORN 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A ORN 9 C ? ? ? 1_555 A LYS 10 N ? ? A ORN 8 A LYS 9 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale5 covale both ? A PHE 11 C ? ? ? 1_555 A HAO 12 N ? ? A PHE 10 A HAO 11 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale6 covale both ? A HAO 12 C ? ? ? 1_555 A 4BF 13 N ? ? A HAO 11 A 4BF 12 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A 4BF 13 C ? ? ? 1_555 A LYS 14 N ? ? A 4BF 12 A LYS 13 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? B ORN 1 C ? ? ? 1_555 B ALA 2 N ? ? B ORN 0 B ALA 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? B ORN 1 NE ? ? ? 1_555 B LYS 14 C ? ? B ORN 0 B LYS 13 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale10 covale both ? B VAL 8 C ? ? ? 1_555 B ORN 9 NE ? ? B VAL 7 B ORN 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale11 covale both ? B ORN 9 C ? ? ? 1_555 B LYS 10 N ? ? B ORN 8 B LYS 9 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale12 covale both ? B PHE 11 C ? ? ? 1_555 B HAO 12 N ? ? B PHE 10 B HAO 11 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale13 covale both ? B HAO 12 C ? ? ? 1_555 B 4BF 13 N ? ? B HAO 11 B 4BF 12 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale14 covale both ? B 4BF 13 C ? ? ? 1_555 B LYS 14 N ? ? B 4BF 12 B LYS 13 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MPD 14 ? 6 'BINDING SITE FOR RESIDUE MPD A 14' AC2 Software B MPD 14 ? 5 'BINDING SITE FOR RESIDUE MPD B 14' AC3 Software A MPD 15 ? 4 'BINDING SITE FOR RESIDUE MPD A 15' AC4 Software B MPD 15 ? 2 'BINDING SITE FOR RESIDUE MPD B 15' AC5 Software B MPD 16 ? 5 'BINDING SITE FOR RESIDUE MPD B 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ILE A 4 ? ILE A 3 . ? 1_555 ? 2 AC1 6 PHE A 11 ? PHE A 10 . ? 1_555 ? 3 AC1 6 HAO A 12 ? HAO A 11 . ? 1_555 ? 4 AC1 6 ILE B 3 ? ILE B 2 . ? 1_555 ? 5 AC1 6 4BF B 13 ? 4BF B 12 . ? 11_555 ? 6 AC1 6 MPD E . ? MPD B 14 . ? 1_555 ? 7 AC2 5 ILE A 3 ? ILE A 2 . ? 1_555 ? 8 AC2 5 4BF A 13 ? 4BF A 12 . ? 8_555 ? 9 AC2 5 MPD C . ? MPD A 14 . ? 1_555 ? 10 AC2 5 ILE B 3 ? ILE B 2 . ? 1_555 ? 11 AC2 5 HAO B 12 ? HAO B 11 . ? 1_555 ? 12 AC3 4 LEU A 6 ? LEU A 5 . ? 2_655 ? 13 AC3 4 HAO A 12 ? HAO A 11 . ? 2_655 ? 14 AC3 4 HAO A 12 ? HAO A 11 . ? 1_555 ? 15 AC3 4 4BF A 13 ? 4BF A 12 . ? 1_555 ? 16 AC4 2 ORN B 9 ? ORN B 8 . ? 6_565 ? 17 AC4 2 LYS B 14 ? LYS B 13 . ? 1_555 ? 18 AC5 5 LEU B 6 ? LEU B 5 . ? 4_565 ? 19 AC5 5 LYS B 10 ? LYS B 9 . ? 4_565 ? 20 AC5 5 HAO B 12 ? HAO B 11 . ? 4_565 ? 21 AC5 5 HAO B 12 ? HAO B 11 . ? 1_555 ? 22 AC5 5 4BF B 13 ? 4BF B 12 . ? 1_555 ? # _atom_sites.entry_id 3T4G _atom_sites.fract_transf_matrix[1][1] 0.022528 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022528 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022528 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 0 0 ORN ORN A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 ILE 3 2 2 ILE ILE A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 GLY 5 4 4 GLY GLY A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 MET 7 6 6 MET MET A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 ORN 9 8 8 ORN ORN A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 HAO 12 11 11 HAO HAO A . n A 1 13 4BF 13 12 12 4BF 4BF A . n A 1 14 LYS 14 13 13 LYS LYS A . n B 1 1 ORN 1 0 0 ORN ORN B . n B 1 2 ALA 2 1 1 ALA ALA B . n B 1 3 ILE 3 2 2 ILE ILE B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 GLY 5 4 4 GLY GLY B . n B 1 6 LEU 6 5 5 LEU LEU B . n B 1 7 MET 7 6 6 MET MET B . n B 1 8 VAL 8 7 7 VAL VAL B . n B 1 9 ORN 9 8 8 ORN ORN B . n B 1 10 LYS 10 9 9 LYS LYS B . n B 1 11 PHE 11 10 10 PHE PHE B . n B 1 12 HAO 12 11 11 HAO HAO B . n B 1 13 4BF 13 12 12 4BF 4BF B . n B 1 14 LYS 14 13 13 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 14 1 MPD MPD A . D 2 MPD 1 15 1 MPD MPD A . E 2 MPD 1 14 1 MPD MPD B . F 2 MPD 1 15 1 MPD MPD B . G 2 MPD 1 16 1 MPD MPD B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ORN 1 A ORN 0 ? ALA L-ORNITHINE 2 A ORN 9 A ORN 8 ? ALA L-ORNITHINE 3 A 4BF 13 A 4BF 12 ? TYR 4-BROMO-L-PHENYLALANINE 4 B ORN 1 B ORN 0 ? ALA L-ORNITHINE 5 B ORN 9 B ORN 8 ? ALA L-ORNITHINE 6 B 4BF 13 B 4BF 12 ? TYR 4-BROMO-L-PHENYLALANINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA dimeric 2 4 software_defined_assembly PISA tetrameric 4 5 software_defined_assembly PISA tetrameric 4 6 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2,3,4 A,C,D 3 1,3 A,C,D 4 1,3 A,B,C,D,E,F,G 5 1,5,3,6 B,E,F,G 6 1,3 B,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2650 ? 2 MORE -30 ? 2 'SSA (A^2)' 4750 ? 3 'ABSA (A^2)' 680 ? 3 MORE -6 ? 3 'SSA (A^2)' 3020 ? 4 'ABSA (A^2)' 2240 ? 4 MORE -16 ? 4 'SSA (A^2)' 5310 ? 5 'ABSA (A^2)' 2760 ? 5 MORE -26 ? 5 'SSA (A^2)' 4940 ? 6 'ABSA (A^2)' 690 ? 6 MORE -6 ? 6 'SSA (A^2)' 3160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 -1.0000000000 0.0000000000 44.3900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 44.3900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-31 2 'Structure model' 1 1 2014-07-16 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_validate_polymer_linkage 2 3 'Structure model' reflns_shell 3 4 'Structure model' atom_site 4 4 'Structure model' atom_site_anisotrop 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_validate_rmsd_angle 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_ref_seq 11 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns_shell.percent_possible_all' 2 4 'Structure model' '_atom_site.auth_atom_id' 3 4 'Structure model' '_atom_site.label_atom_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 5 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_ref_seq.db_align_beg' 25 4 'Structure model' '_struct_ref_seq.db_align_end' 26 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.0949 4.6588 -4.2862 0.1691 0.0779 0.0454 0.0299 -0.0086 0.0155 3.0520 3.4165 0.5887 1.3559 1.3368 0.6334 0.2718 -0.0204 0.1824 -0.3850 -0.3239 0.0125 0.1300 -0.0148 0.0522 'X-RAY DIFFRACTION' 2 ? refined 17.7448 17.3045 -2.4800 0.0538 0.0740 0.2113 0.0027 -0.0053 -0.0162 0.0604 2.8063 0.8195 0.2187 0.1674 -0.1013 0.0215 0.0067 0.0875 0.0051 -0.1294 0.4090 0.1751 0.0947 0.1080 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 13 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 ? ? B 13 ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 BR B 4BF 12 ? ? 1_555 C5 A MPD 14 ? ? 8_555 1.01 2 1 BR B 4BF 12 ? ? 1_555 C4 A MPD 14 ? ? 8_555 1.08 3 1 BR A 4BF 12 ? ? 1_555 O2 B MPD 14 ? ? 11_555 1.10 4 1 BR A 4BF 12 ? ? 1_555 C2 B MPD 14 ? ? 11_555 1.41 5 1 BR B 4BF 12 ? ? 1_555 O4 A MPD 14 ? ? 8_555 1.47 6 1 BR A 4BF 12 ? ? 1_555 CM B MPD 14 ? ? 11_555 1.64 7 1 CE2 A 4BF 12 ? ? 1_555 C1 B MPD 14 ? ? 11_555 1.79 8 1 CZ A 4BF 12 ? ? 1_555 C1 B MPD 14 ? ? 11_555 1.97 9 1 CZ B 4BF 12 ? ? 1_555 C4 A MPD 14 ? ? 8_555 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A HAO 11 ? ? C A HAO 11 ? ? N A 4BF 12 ? ? 140.12 117.20 22.92 2.20 Y 2 1 CA B HAO 11 ? ? C B HAO 11 ? ? N B 4BF 12 ? ? 142.69 117.20 25.49 2.20 Y # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 4BF A 12 ? ? 10.50 2 1 4BF B 12 ? ? 13.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 9 ? CG ? A LYS 10 CG 2 1 Y 1 A LYS 9 ? CD ? A LYS 10 CD 3 1 Y 1 A LYS 9 ? CE ? A LYS 10 CE 4 1 Y 1 A LYS 9 ? NZ ? A LYS 10 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4BF CD1 C Y N 1 4BF CE1 C Y N 2 4BF CZ C Y N 3 4BF BR BR N N 4 4BF CE2 C Y N 5 4BF CD2 C Y N 6 4BF CG C Y N 7 4BF CB C N N 8 4BF CA C N S 9 4BF N N N N 10 4BF C C N N 11 4BF OXT O N N 12 4BF O O N N 13 4BF HD1 H N N 14 4BF HE1 H N N 15 4BF HE2 H N N 16 4BF HD2 H N N 17 4BF HB3 H N N 18 4BF HB2 H N N 19 4BF HA H N N 20 4BF H H N N 21 4BF H2 H N N 22 4BF HXT H N N 23 ALA N N N N 24 ALA CA C N S 25 ALA C C N N 26 ALA O O N N 27 ALA CB C N N 28 ALA OXT O N N 29 ALA H H N N 30 ALA H2 H N N 31 ALA HA H N N 32 ALA HB1 H N N 33 ALA HB2 H N N 34 ALA HB3 H N N 35 ALA HXT H N N 36 GLY N N N N 37 GLY CA C N N 38 GLY C C N N 39 GLY O O N N 40 GLY OXT O N N 41 GLY H H N N 42 GLY H2 H N N 43 GLY HA2 H N N 44 GLY HA3 H N N 45 GLY HXT H N N 46 HAO N N N N 47 HAO N9 N N N 48 HAO C10 C N N 49 HAO O11 O N N 50 HAO CA C Y N 51 HAO C13 C Y N 52 HAO C14 C Y N 53 HAO C15 C N N 54 HAO O15 O N N 55 HAO C17 C Y N 56 HAO C18 C Y N 57 HAO C19 C Y N 58 HAO N20 N N N 59 HAO C21 C N N 60 HAO O22 O N N 61 HAO C C N N 62 HAO O O N N 63 HAO H H N N 64 HAO H13 H N N 65 HAO H15 H N N 66 HAO H15A H N N 67 HAO H15B H N N 68 HAO H17 H N N 69 HAO H18 H N N 70 HAO HN20 H N N 71 HAO OXT O N N 72 HAO H2 H N N 73 HAO H10 H N N 74 HAO HXT H N N 75 ILE N N N N 76 ILE CA C N S 77 ILE C C N N 78 ILE O O N N 79 ILE CB C N S 80 ILE CG1 C N N 81 ILE CG2 C N N 82 ILE CD1 C N N 83 ILE OXT O N N 84 ILE H H N N 85 ILE H2 H N N 86 ILE HA H N N 87 ILE HB H N N 88 ILE HG12 H N N 89 ILE HG13 H N N 90 ILE HG21 H N N 91 ILE HG22 H N N 92 ILE HG23 H N N 93 ILE HD11 H N N 94 ILE HD12 H N N 95 ILE HD13 H N N 96 ILE HXT H N N 97 LEU N N N N 98 LEU CA C N S 99 LEU C C N N 100 LEU O O N N 101 LEU CB C N N 102 LEU CG C N N 103 LEU CD1 C N N 104 LEU CD2 C N N 105 LEU OXT O N N 106 LEU H H N N 107 LEU H2 H N N 108 LEU HA H N N 109 LEU HB2 H N N 110 LEU HB3 H N N 111 LEU HG H N N 112 LEU HD11 H N N 113 LEU HD12 H N N 114 LEU HD13 H N N 115 LEU HD21 H N N 116 LEU HD22 H N N 117 LEU HD23 H N N 118 LEU HXT H N N 119 LYS N N N N 120 LYS CA C N S 121 LYS C C N N 122 LYS O O N N 123 LYS CB C N N 124 LYS CG C N N 125 LYS CD C N N 126 LYS CE C N N 127 LYS NZ N N N 128 LYS OXT O N N 129 LYS H H N N 130 LYS H2 H N N 131 LYS HA H N N 132 LYS HB2 H N N 133 LYS HB3 H N N 134 LYS HG2 H N N 135 LYS HG3 H N N 136 LYS HD2 H N N 137 LYS HD3 H N N 138 LYS HE2 H N N 139 LYS HE3 H N N 140 LYS HZ1 H N N 141 LYS HZ2 H N N 142 LYS HZ3 H N N 143 LYS HXT H N N 144 MET N N N N 145 MET CA C N S 146 MET C C N N 147 MET O O N N 148 MET CB C N N 149 MET CG C N N 150 MET SD S N N 151 MET CE C N N 152 MET OXT O N N 153 MET H H N N 154 MET H2 H N N 155 MET HA H N N 156 MET HB2 H N N 157 MET HB3 H N N 158 MET HG2 H N N 159 MET HG3 H N N 160 MET HE1 H N N 161 MET HE2 H N N 162 MET HE3 H N N 163 MET HXT H N N 164 MPD C1 C N N 165 MPD C2 C N N 166 MPD O2 O N N 167 MPD CM C N N 168 MPD C3 C N N 169 MPD C4 C N S 170 MPD O4 O N N 171 MPD C5 C N N 172 MPD H11 H N N 173 MPD H12 H N N 174 MPD H13 H N N 175 MPD HO2 H N N 176 MPD HM1 H N N 177 MPD HM2 H N N 178 MPD HM3 H N N 179 MPD H31 H N N 180 MPD H32 H N N 181 MPD H4 H N N 182 MPD HO4 H N N 183 MPD H51 H N N 184 MPD H52 H N N 185 MPD H53 H N N 186 ORN N N N N 187 ORN CA C N S 188 ORN CB C N N 189 ORN CG C N N 190 ORN CD C N N 191 ORN NE N N N 192 ORN C C N N 193 ORN O O N N 194 ORN OXT O N N 195 ORN H H N N 196 ORN H2 H N N 197 ORN HA H N N 198 ORN HB2 H N N 199 ORN HB3 H N N 200 ORN HG2 H N N 201 ORN HG3 H N N 202 ORN HD2 H N N 203 ORN HD3 H N N 204 ORN HE1 H N N 205 ORN HE2 H N N 206 ORN HXT H N N 207 PHE N N N N 208 PHE CA C N S 209 PHE C C N N 210 PHE O O N N 211 PHE CB C N N 212 PHE CG C Y N 213 PHE CD1 C Y N 214 PHE CD2 C Y N 215 PHE CE1 C Y N 216 PHE CE2 C Y N 217 PHE CZ C Y N 218 PHE OXT O N N 219 PHE H H N N 220 PHE H2 H N N 221 PHE HA H N N 222 PHE HB2 H N N 223 PHE HB3 H N N 224 PHE HD1 H N N 225 PHE HD2 H N N 226 PHE HE1 H N N 227 PHE HE2 H N N 228 PHE HZ H N N 229 PHE HXT H N N 230 VAL N N N N 231 VAL CA C N S 232 VAL C C N N 233 VAL O O N N 234 VAL CB C N N 235 VAL CG1 C N N 236 VAL CG2 C N N 237 VAL OXT O N N 238 VAL H H N N 239 VAL H2 H N N 240 VAL HA H N N 241 VAL HB H N N 242 VAL HG11 H N N 243 VAL HG12 H N N 244 VAL HG13 H N N 245 VAL HG21 H N N 246 VAL HG22 H N N 247 VAL HG23 H N N 248 VAL HXT H N N 249 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4BF CD1 CE1 doub Y N 1 4BF CD1 CG sing Y N 2 4BF CD1 HD1 sing N N 3 4BF CE1 CZ sing Y N 4 4BF CE1 HE1 sing N N 5 4BF CZ BR sing N N 6 4BF CZ CE2 doub Y N 7 4BF CE2 CD2 sing Y N 8 4BF CE2 HE2 sing N N 9 4BF CD2 CG doub Y N 10 4BF CD2 HD2 sing N N 11 4BF CG CB sing N N 12 4BF CB CA sing N N 13 4BF CB HB3 sing N N 14 4BF CB HB2 sing N N 15 4BF CA N sing N N 16 4BF CA C sing N N 17 4BF CA HA sing N N 18 4BF N H sing N N 19 4BF N H2 sing N N 20 4BF C OXT sing N N 21 4BF C O doub N N 22 4BF OXT HXT sing N N 23 ALA N CA sing N N 24 ALA N H sing N N 25 ALA N H2 sing N N 26 ALA CA C sing N N 27 ALA CA CB sing N N 28 ALA CA HA sing N N 29 ALA C O doub N N 30 ALA C OXT sing N N 31 ALA CB HB1 sing N N 32 ALA CB HB2 sing N N 33 ALA CB HB3 sing N N 34 ALA OXT HXT sing N N 35 GLY N CA sing N N 36 GLY N H sing N N 37 GLY N H2 sing N N 38 GLY CA C sing N N 39 GLY CA HA2 sing N N 40 GLY CA HA3 sing N N 41 GLY C O doub N N 42 GLY C OXT sing N N 43 GLY OXT HXT sing N N 44 HAO N N9 sing N N 45 HAO N H sing N N 46 HAO C10 N9 sing N N 47 HAO C10 CA sing N N 48 HAO O11 C10 doub N N 49 HAO CA C14 sing Y N 50 HAO C13 CA doub Y N 51 HAO C13 C19 sing Y N 52 HAO C13 H13 sing N N 53 HAO C14 C17 doub Y N 54 HAO C14 O15 sing N N 55 HAO C15 H15 sing N N 56 HAO C15 H15A sing N N 57 HAO C15 H15B sing N N 58 HAO O15 C15 sing N N 59 HAO C17 H17 sing N N 60 HAO C18 C17 sing Y N 61 HAO C18 H18 sing N N 62 HAO C19 C18 doub Y N 63 HAO N20 C19 sing N N 64 HAO N20 HN20 sing N N 65 HAO C21 N20 sing N N 66 HAO C21 O22 doub N N 67 HAO C C21 sing N N 68 HAO C OXT sing N N 69 HAO O C doub N N 70 HAO N H2 sing N N 71 HAO N9 H10 sing N N 72 HAO OXT HXT sing N N 73 ILE N CA sing N N 74 ILE N H sing N N 75 ILE N H2 sing N N 76 ILE CA C sing N N 77 ILE CA CB sing N N 78 ILE CA HA sing N N 79 ILE C O doub N N 80 ILE C OXT sing N N 81 ILE CB CG1 sing N N 82 ILE CB CG2 sing N N 83 ILE CB HB sing N N 84 ILE CG1 CD1 sing N N 85 ILE CG1 HG12 sing N N 86 ILE CG1 HG13 sing N N 87 ILE CG2 HG21 sing N N 88 ILE CG2 HG22 sing N N 89 ILE CG2 HG23 sing N N 90 ILE CD1 HD11 sing N N 91 ILE CD1 HD12 sing N N 92 ILE CD1 HD13 sing N N 93 ILE OXT HXT sing N N 94 LEU N CA sing N N 95 LEU N H sing N N 96 LEU N H2 sing N N 97 LEU CA C sing N N 98 LEU CA CB sing N N 99 LEU CA HA sing N N 100 LEU C O doub N N 101 LEU C OXT sing N N 102 LEU CB CG sing N N 103 LEU CB HB2 sing N N 104 LEU CB HB3 sing N N 105 LEU CG CD1 sing N N 106 LEU CG CD2 sing N N 107 LEU CG HG sing N N 108 LEU CD1 HD11 sing N N 109 LEU CD1 HD12 sing N N 110 LEU CD1 HD13 sing N N 111 LEU CD2 HD21 sing N N 112 LEU CD2 HD22 sing N N 113 LEU CD2 HD23 sing N N 114 LEU OXT HXT sing N N 115 LYS N CA sing N N 116 LYS N H sing N N 117 LYS N H2 sing N N 118 LYS CA C sing N N 119 LYS CA CB sing N N 120 LYS CA HA sing N N 121 LYS C O doub N N 122 LYS C OXT sing N N 123 LYS CB CG sing N N 124 LYS CB HB2 sing N N 125 LYS CB HB3 sing N N 126 LYS CG CD sing N N 127 LYS CG HG2 sing N N 128 LYS CG HG3 sing N N 129 LYS CD CE sing N N 130 LYS CD HD2 sing N N 131 LYS CD HD3 sing N N 132 LYS CE NZ sing N N 133 LYS CE HE2 sing N N 134 LYS CE HE3 sing N N 135 LYS NZ HZ1 sing N N 136 LYS NZ HZ2 sing N N 137 LYS NZ HZ3 sing N N 138 LYS OXT HXT sing N N 139 MET N CA sing N N 140 MET N H sing N N 141 MET N H2 sing N N 142 MET CA C sing N N 143 MET CA CB sing N N 144 MET CA HA sing N N 145 MET C O doub N N 146 MET C OXT sing N N 147 MET CB CG sing N N 148 MET CB HB2 sing N N 149 MET CB HB3 sing N N 150 MET CG SD sing N N 151 MET CG HG2 sing N N 152 MET CG HG3 sing N N 153 MET SD CE sing N N 154 MET CE HE1 sing N N 155 MET CE HE2 sing N N 156 MET CE HE3 sing N N 157 MET OXT HXT sing N N 158 MPD C1 C2 sing N N 159 MPD C1 H11 sing N N 160 MPD C1 H12 sing N N 161 MPD C1 H13 sing N N 162 MPD C2 O2 sing N N 163 MPD C2 CM sing N N 164 MPD C2 C3 sing N N 165 MPD O2 HO2 sing N N 166 MPD CM HM1 sing N N 167 MPD CM HM2 sing N N 168 MPD CM HM3 sing N N 169 MPD C3 C4 sing N N 170 MPD C3 H31 sing N N 171 MPD C3 H32 sing N N 172 MPD C4 O4 sing N N 173 MPD C4 C5 sing N N 174 MPD C4 H4 sing N N 175 MPD O4 HO4 sing N N 176 MPD C5 H51 sing N N 177 MPD C5 H52 sing N N 178 MPD C5 H53 sing N N 179 ORN N CA sing N N 180 ORN N H sing N N 181 ORN N H2 sing N N 182 ORN CA CB sing N N 183 ORN CA C sing N N 184 ORN CA HA sing N N 185 ORN CB CG sing N N 186 ORN CB HB2 sing N N 187 ORN CB HB3 sing N N 188 ORN CG CD sing N N 189 ORN CG HG2 sing N N 190 ORN CG HG3 sing N N 191 ORN CD NE sing N N 192 ORN CD HD2 sing N N 193 ORN CD HD3 sing N N 194 ORN NE HE1 sing N N 195 ORN NE HE2 sing N N 196 ORN C O doub N N 197 ORN C OXT sing N N 198 ORN OXT HXT sing N N 199 PHE N CA sing N N 200 PHE N H sing N N 201 PHE N H2 sing N N 202 PHE CA C sing N N 203 PHE CA CB sing N N 204 PHE CA HA sing N N 205 PHE C O doub N N 206 PHE C OXT sing N N 207 PHE CB CG sing N N 208 PHE CB HB2 sing N N 209 PHE CB HB3 sing N N 210 PHE CG CD1 doub Y N 211 PHE CG CD2 sing Y N 212 PHE CD1 CE1 sing Y N 213 PHE CD1 HD1 sing N N 214 PHE CD2 CE2 doub Y N 215 PHE CD2 HD2 sing N N 216 PHE CE1 CZ doub Y N 217 PHE CE1 HE1 sing N N 218 PHE CE2 CZ sing Y N 219 PHE CE2 HE2 sing N N 220 PHE CZ HZ sing N N 221 PHE OXT HXT sing N N 222 VAL N CA sing N N 223 VAL N H sing N N 224 VAL N H2 sing N N 225 VAL CA C sing N N 226 VAL CA CB sing N N 227 VAL CA HA sing N N 228 VAL C O doub N N 229 VAL C OXT sing N N 230 VAL CB CG1 sing N N 231 VAL CB CG2 sing N N 232 VAL CB HB sing N N 233 VAL CG1 HG11 sing N N 234 VAL CG1 HG12 sing N N 235 VAL CG1 HG13 sing N N 236 VAL CG2 HG21 sing N N 237 VAL CG2 HG22 sing N N 238 VAL CG2 HG23 sing N N 239 VAL OXT HXT sing N N 240 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(4S)-2-METHYL-2,4-PENTANEDIOL' _pdbx_entity_nonpoly.comp_id MPD # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? 'H, K, L' 0.503 2 1 1 ? 'L, -K, H' 0.497 #