data_3TDQ # _entry.id 3TDQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TDQ pdb_00003tdq 10.2210/pdb3tdq/pdb RCSB RCSB067356 ? ? WWPDB D_1000067356 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 417321 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3TDQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a fimbrial biogenesis protein PilY2 (PA4555) from Pseudomonas aeruginosa PAO1 at 2.10 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3TDQ _cell.length_a 51.156 _cell.length_b 53.582 _cell.length_c 76.667 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TDQ _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PilY2 protein' 11286.025 2 ? ? 'UNP residues 19-115' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Type 4 fimbrial biogenesis protein PilY2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEDPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNG(MSE)PSLFQVKPGSVVSYSGTVSQPWSTITDIYIHKQ (MSE)SEQELAE(MSE)IEKEQPRQDGEEQPR ; _entity_poly.pdbx_seq_one_letter_code_can ;GEDPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNGMPSLFQVKPGSVVSYSGTVSQPWSTITDIYIHKQMSEQEL AEMIEKEQPRQDGEEQPR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 417321 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ASP n 1 4 PRO n 1 5 GLN n 1 6 THR n 1 7 PHE n 1 8 GLU n 1 9 GLY n 1 10 ALA n 1 11 GLY n 1 12 VAL n 1 13 VAL n 1 14 PHE n 1 15 GLU n 1 16 VAL n 1 17 GLN n 1 18 VAL n 1 19 GLU n 1 20 LYS n 1 21 ASN n 1 22 LEU n 1 23 VAL n 1 24 ASP n 1 25 ILE n 1 26 ASP n 1 27 HIS n 1 28 ARG n 1 29 LEU n 1 30 TYR n 1 31 ARG n 1 32 LEU n 1 33 PRO n 1 34 ASN n 1 35 SER n 1 36 THR n 1 37 VAL n 1 38 ARG n 1 39 ASN n 1 40 GLY n 1 41 MSE n 1 42 PRO n 1 43 SER n 1 44 LEU n 1 45 PHE n 1 46 GLN n 1 47 VAL n 1 48 LYS n 1 49 PRO n 1 50 GLY n 1 51 SER n 1 52 VAL n 1 53 VAL n 1 54 SER n 1 55 TYR n 1 56 SER n 1 57 GLY n 1 58 THR n 1 59 VAL n 1 60 SER n 1 61 GLN n 1 62 PRO n 1 63 TRP n 1 64 SER n 1 65 THR n 1 66 ILE n 1 67 THR n 1 68 ASP n 1 69 ILE n 1 70 TYR n 1 71 ILE n 1 72 HIS n 1 73 LYS n 1 74 GLN n 1 75 MSE n 1 76 SER n 1 77 GLU n 1 78 GLN n 1 79 GLU n 1 80 LEU n 1 81 ALA n 1 82 GLU n 1 83 MSE n 1 84 ILE n 1 85 GLU n 1 86 LYS n 1 87 GLU n 1 88 GLN n 1 89 PRO n 1 90 ARG n 1 91 GLN n 1 92 ASP n 1 93 GLY n 1 94 GLU n 1 95 GLU n 1 96 GLN n 1 97 PRO n 1 98 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pilY2, PA4555' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas aeruginosa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q51537_PSEAE _struct_ref.pdbx_db_accession Q51537 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EDPQTFEGAGVVFEVQVEKNLVDIDHRLYRLPNSTVRNGMPSLFQVKPGSVVSYSGTVSQPWSTITDIYIHKQMSEQELA EMIEKEQPRQDGEEQPR ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TDQ A 2 ? 98 ? Q51537 19 ? 115 ? 19 115 2 1 3TDQ B 2 ? 98 ? Q51537 19 ? 115 ? 19 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TDQ GLY A 1 ? UNP Q51537 ? ? 'expression tag' 0 1 2 3TDQ GLY B 1 ? UNP Q51537 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3TDQ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.15 _exptl_crystal.description 'DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND .' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '15.00% Glycerol, 0.17M NH4OAc, 25.50% PEG-4000, 0.1M Acetate pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing)' _diffrn_detector.pdbx_collection_date 2011-07-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97901 1.0 2 0.91162 1.0 3 0.97876 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97901,0.91162,0.97876 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3TDQ _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 25.556 _reflns.number_obs 12753 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_sigmaI 10.940 _reflns.percent_possible_obs 97.400 _reflns.B_iso_Wilson_estimate 33.782 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.170 3708 ? 1968 0.330 2.4 ? ? ? ? ? 86.700 1 1 2.170 2.260 4710 ? 2447 0.299 2.8 ? ? ? ? ? 99.100 2 1 2.260 2.360 4491 ? 2346 0.232 3.6 ? ? ? ? ? 99.400 3 1 2.360 2.490 4772 ? 2480 0.196 4.4 ? ? ? ? ? 99.200 4 1 2.490 2.640 4441 ? 2299 0.147 5.6 ? ? ? ? ? 99.100 5 1 2.640 2.850 4747 ? 2458 0.115 7.2 ? ? ? ? ? 99.000 6 1 2.850 3.130 4503 ? 2332 0.064 11.7 ? ? ? ? ? 99.300 7 1 3.130 3.590 4624 ? 2392 0.040 17.3 ? ? ? ? ? 98.400 8 1 3.590 4.510 4526 ? 2329 0.024 25.5 ? ? ? ? ? 97.600 9 1 4.510 25.556 4565 ? 2329 0.024 28.4 ? ? ? ? ? 95.500 10 1 # _refine.entry_id 3TDQ _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 25.556 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 12718 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. CHLORIDE, SODIUM, GLYCEROL AND ACETATE MODELED ARE PRESENT IN CRYSTALLIZATION/PROTEIN BUFFER CONDITIONS. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1882 _refine.ls_R_factor_R_work 0.1868 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2150 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8700 _refine.ls_number_reflns_R_free 620 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.2619 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.7312 _refine.aniso_B[2][2] -2.4473 _refine.aniso_B[3][3] -0.2838 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9463 _refine.correlation_coeff_Fo_to_Fc_free 0.9366 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 151.230 _refine.B_iso_min 22.710 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1275 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1399 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 25.556 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 619 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 35 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 192 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1339 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 0 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 175 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1505 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1339 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1819 1.060 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.650 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.540 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.3000 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2783 _refine_ls_shell.R_factor_all 0.1819 _refine_ls_shell.R_factor_R_work 0.1809 _refine_ls_shell.R_factor_R_free 0.1984 _refine_ls_shell.percent_reflns_R_free 5.7600 _refine_ls_shell.number_reflns_R_free 170 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2953 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TDQ _struct.title 'Crystal structure of a fimbrial biogenesis protein PilY2 (PilY2_PA4555) from Pseudomonas aeruginosa PAO1 at 2.10 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'fimbiria, cell adhesion, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY' _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.entry_id 3TDQ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 18 ? LYS A 20 ? VAL A 35 LYS A 37 5 ? 3 HELX_P HELX_P2 2 LEU A 44 ? GLN A 46 ? LEU A 61 GLN A 63 5 ? 3 HELX_P HELX_P3 3 GLU A 79 ? GLU A 87 ? GLU A 96 GLU A 104 1 ? 9 HELX_P HELX_P4 4 VAL B 18 ? LYS B 20 ? VAL B 35 LYS B 37 5 ? 3 HELX_P HELX_P5 5 LEU B 44 ? GLN B 46 ? LEU B 61 GLN B 63 5 ? 3 HELX_P HELX_P6 6 HIS B 72 ? ALA B 81 ? HIS B 89 ALA B 98 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 40 C ? ? ? 1_555 A MSE 41 N ? ? A GLY 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A MSE 41 C ? ? ? 1_555 A PRO 42 N ? ? A MSE 58 A PRO 59 1_555 ? ? ? ? ? ? ? 1.358 ? ? covale3 covale both ? A GLN 74 C ? ? ? 1_555 A MSE 75 N ? ? A GLN 91 A MSE 92 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? A MSE 75 C ? ? ? 1_555 A SER 76 N ? ? A MSE 92 A SER 93 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale5 covale both ? A GLU 82 C ? ? ? 1_555 A MSE 83 N ? ? A GLU 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale6 covale both ? A MSE 83 C ? ? ? 1_555 A ILE 84 N ? ? A MSE 100 A ILE 101 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale7 covale both ? B GLY 40 C ? ? ? 1_555 B MSE 41 N ? ? B GLY 57 B MSE 58 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale8 covale both ? B MSE 41 C ? ? ? 1_555 B PRO 42 N ? ? B MSE 58 B PRO 59 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale9 covale both ? B GLN 74 C ? ? ? 1_555 B MSE 75 N ? ? B GLN 91 B MSE 92 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale10 covale both ? B MSE 75 C ? ? ? 1_555 B SER 76 N ? ? B MSE 92 B SER 93 1_555 ? ? ? ? ? ? ? 1.355 ? ? metalc1 metalc ? ? A ASP 3 O ? ? ? 1_555 D NA . NA ? ? A ASP 20 A NA 117 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc2 metalc ? ? A THR 6 O ? ? ? 1_555 D NA . NA ? ? A THR 23 A NA 117 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc3 metalc ? ? A THR 6 OG1 ? ? ? 1_555 D NA . NA ? ? A THR 23 A NA 117 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 117 A HOH 170 1_555 ? ? ? ? ? ? ? 2.748 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 117 A HOH 185 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 117 A HOH 203 1_555 ? ? ? ? ? ? ? 2.617 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 61 A . ? GLN 78 A PRO 62 A ? PRO 79 A 1 -0.92 2 GLN 61 B . ? GLN 78 B PRO 62 B ? PRO 79 B 1 -0.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 7 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 6 ? GLN A 17 ? THR A 23 GLN A 34 A 2 LEU A 22 ? ILE A 25 ? LEU A 39 ILE A 42 A 3 ARG A 28 ? ARG A 31 ? ARG A 45 ARG A 48 A 4 THR A 65 ? ILE A 71 ? THR A 82 ILE A 88 A 5 VAL A 52 ? THR A 58 ? VAL A 69 THR A 75 A 6 THR A 6 ? GLN A 17 ? THR A 23 GLN A 34 B 1 VAL A 37 ? ARG A 38 ? VAL A 54 ARG A 55 B 2 MSE A 41 ? PRO A 42 ? MSE A 58 PRO A 59 C 1 GLU A 77 ? GLN A 78 ? GLU A 94 GLN A 95 C 2 THR B 6 ? GLN B 17 ? THR B 23 GLN B 34 C 3 VAL B 52 ? THR B 58 ? VAL B 69 THR B 75 C 4 THR B 65 ? ILE B 71 ? THR B 82 ILE B 88 C 5 ARG B 28 ? ARG B 31 ? ARG B 45 ARG B 48 C 6 LEU B 22 ? ILE B 25 ? LEU B 39 ILE B 42 C 7 THR B 6 ? GLN B 17 ? THR B 23 GLN B 34 D 1 VAL B 37 ? ARG B 38 ? VAL B 54 ARG B 55 D 2 MSE B 41 ? PRO B 42 ? MSE B 58 PRO B 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 17 ? N GLN A 34 O LEU A 22 ? O LEU A 39 A 2 3 N VAL A 23 ? N VAL A 40 O TYR A 30 ? O TYR A 47 A 3 4 N ARG A 31 ? N ARG A 48 O ILE A 66 ? O ILE A 83 A 4 5 O TYR A 70 ? O TYR A 87 N SER A 54 ? N SER A 71 A 5 6 O VAL A 53 ? O VAL A 70 N GLY A 11 ? N GLY A 28 B 1 2 N ARG A 38 ? N ARG A 55 O MSE A 41 ? O MSE A 58 C 1 2 N GLU A 77 ? N GLU A 94 O GLU B 8 ? O GLU B 25 C 2 3 N GLY B 11 ? N GLY B 28 O VAL B 53 ? O VAL B 70 C 3 4 N SER B 54 ? N SER B 71 O TYR B 70 ? O TYR B 87 C 4 5 O ILE B 66 ? O ILE B 83 N ARG B 31 ? N ARG B 48 C 5 6 O ARG B 28 ? O ARG B 45 N ILE B 25 ? N ILE B 42 C 6 7 O ASP B 24 ? O ASP B 41 N GLU B 15 ? N GLU B 32 D 1 2 N ARG B 38 ? N ARG B 55 O MSE B 41 ? O MSE B 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 116 ? 5 'BINDING SITE FOR RESIDUE CL A 116' AC2 Software A NA 117 ? 5 'BINDING SITE FOR RESIDUE NA A 117' AC3 Software A GOL 118 ? 5 'BINDING SITE FOR RESIDUE GOL A 118' AC4 Software A GOL 119 ? 9 'BINDING SITE FOR RESIDUE GOL A 119' AC5 Software A GOL 120 ? 7 'BINDING SITE FOR RESIDUE GOL A 120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 VAL A 37 ? VAL A 54 . ? 1_555 ? 2 AC1 5 GLY A 40 ? GLY A 57 . ? 1_555 ? 3 AC1 5 VAL B 37 ? VAL B 54 . ? 1_555 ? 4 AC1 5 ASN B 39 ? ASN B 56 . ? 1_555 ? 5 AC1 5 GLY B 40 ? GLY B 57 . ? 1_555 ? 6 AC2 5 ASP A 3 ? ASP A 20 . ? 1_555 ? 7 AC2 5 THR A 6 ? THR A 23 . ? 1_555 ? 8 AC2 5 HOH H . ? HOH A 170 . ? 1_555 ? 9 AC2 5 HOH H . ? HOH A 185 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 203 . ? 1_555 ? 11 AC3 5 TYR A 30 ? TYR A 47 . ? 4_565 ? 12 AC3 5 SER A 64 ? SER A 81 . ? 4_565 ? 13 AC3 5 GLN A 74 ? GLN A 91 . ? 1_555 ? 14 AC3 5 HOH H . ? HOH A 121 . ? 4_565 ? 15 AC3 5 HOH H . ? HOH A 220 . ? 1_555 ? 16 AC4 9 ARG A 38 ? ARG A 55 . ? 1_555 ? 17 AC4 9 MSE A 41 ? MSE A 58 . ? 1_555 ? 18 AC4 9 SER A 43 ? SER A 60 . ? 1_555 ? 19 AC4 9 GLN A 46 ? GLN A 63 . ? 1_555 ? 20 AC4 9 ILE A 69 ? ILE A 86 . ? 1_555 ? 21 AC4 9 ILE A 71 ? ILE A 88 . ? 1_555 ? 22 AC4 9 HOH H . ? HOH A 181 . ? 1_555 ? 23 AC4 9 HOH H . ? HOH A 194 . ? 1_555 ? 24 AC4 9 HOH I . ? HOH B 127 . ? 1_555 ? 25 AC5 7 PRO A 62 ? PRO A 79 . ? 4_565 ? 26 AC5 7 TRP A 63 ? TRP A 80 . ? 4_565 ? 27 AC5 7 HIS A 72 ? HIS A 89 . ? 1_555 ? 28 AC5 7 LYS A 73 ? LYS A 90 . ? 1_555 ? 29 AC5 7 GLN A 74 ? GLN A 91 . ? 1_555 ? 30 AC5 7 GLN A 78 ? GLN A 95 . ? 1_555 ? 31 AC5 7 GLU B 8 ? GLU B 25 . ? 1_555 ? # _atom_sites.entry_id 3TDQ _atom_sites.fract_transf_matrix[1][1] 0.019548 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018663 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013043 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLU 2 19 19 GLU GLU A . n A 1 3 ASP 3 20 20 ASP ASP A . n A 1 4 PRO 4 21 21 PRO PRO A . n A 1 5 GLN 5 22 22 GLN GLN A . n A 1 6 THR 6 23 23 THR THR A . n A 1 7 PHE 7 24 24 PHE PHE A . n A 1 8 GLU 8 25 25 GLU GLU A . n A 1 9 GLY 9 26 26 GLY GLY A . n A 1 10 ALA 10 27 27 ALA ALA A . n A 1 11 GLY 11 28 28 GLY GLY A . n A 1 12 VAL 12 29 29 VAL VAL A . n A 1 13 VAL 13 30 30 VAL VAL A . n A 1 14 PHE 14 31 31 PHE PHE A . n A 1 15 GLU 15 32 32 GLU GLU A . n A 1 16 VAL 16 33 33 VAL VAL A . n A 1 17 GLN 17 34 34 GLN GLN A . n A 1 18 VAL 18 35 35 VAL VAL A . n A 1 19 GLU 19 36 36 GLU GLU A . n A 1 20 LYS 20 37 37 LYS LYS A . n A 1 21 ASN 21 38 38 ASN ASN A . n A 1 22 LEU 22 39 39 LEU LEU A . n A 1 23 VAL 23 40 40 VAL VAL A . n A 1 24 ASP 24 41 41 ASP ASP A . n A 1 25 ILE 25 42 42 ILE ILE A . n A 1 26 ASP 26 43 43 ASP ASP A . n A 1 27 HIS 27 44 44 HIS HIS A . n A 1 28 ARG 28 45 45 ARG ARG A . n A 1 29 LEU 29 46 46 LEU LEU A . n A 1 30 TYR 30 47 47 TYR TYR A . n A 1 31 ARG 31 48 48 ARG ARG A . n A 1 32 LEU 32 49 49 LEU LEU A . n A 1 33 PRO 33 50 50 PRO PRO A . n A 1 34 ASN 34 51 51 ASN ASN A . n A 1 35 SER 35 52 52 SER SER A . n A 1 36 THR 36 53 53 THR THR A . n A 1 37 VAL 37 54 54 VAL VAL A . n A 1 38 ARG 38 55 55 ARG ARG A . n A 1 39 ASN 39 56 56 ASN ASN A . n A 1 40 GLY 40 57 57 GLY GLY A . n A 1 41 MSE 41 58 58 MSE MSE A . n A 1 42 PRO 42 59 59 PRO PRO A . n A 1 43 SER 43 60 60 SER SER A . n A 1 44 LEU 44 61 61 LEU LEU A . n A 1 45 PHE 45 62 62 PHE PHE A . n A 1 46 GLN 46 63 63 GLN GLN A . n A 1 47 VAL 47 64 64 VAL VAL A . n A 1 48 LYS 48 65 65 LYS LYS A . n A 1 49 PRO 49 66 66 PRO PRO A . n A 1 50 GLY 50 67 67 GLY GLY A . n A 1 51 SER 51 68 68 SER SER A . n A 1 52 VAL 52 69 69 VAL VAL A . n A 1 53 VAL 53 70 70 VAL VAL A . n A 1 54 SER 54 71 71 SER SER A . n A 1 55 TYR 55 72 72 TYR TYR A . n A 1 56 SER 56 73 73 SER SER A . n A 1 57 GLY 57 74 74 GLY GLY A . n A 1 58 THR 58 75 75 THR THR A . n A 1 59 VAL 59 76 76 VAL VAL A . n A 1 60 SER 60 77 77 SER SER A . n A 1 61 GLN 61 78 78 GLN GLN A . n A 1 62 PRO 62 79 79 PRO PRO A . n A 1 63 TRP 63 80 80 TRP TRP A . n A 1 64 SER 64 81 81 SER SER A . n A 1 65 THR 65 82 82 THR THR A . n A 1 66 ILE 66 83 83 ILE ILE A . n A 1 67 THR 67 84 84 THR THR A . n A 1 68 ASP 68 85 85 ASP ASP A . n A 1 69 ILE 69 86 86 ILE ILE A . n A 1 70 TYR 70 87 87 TYR TYR A . n A 1 71 ILE 71 88 88 ILE ILE A . n A 1 72 HIS 72 89 89 HIS HIS A . n A 1 73 LYS 73 90 90 LYS LYS A . n A 1 74 GLN 74 91 91 GLN GLN A . n A 1 75 MSE 75 92 92 MSE MSE A . n A 1 76 SER 76 93 93 SER SER A . n A 1 77 GLU 77 94 94 GLU GLU A . n A 1 78 GLN 78 95 95 GLN GLN A . n A 1 79 GLU 79 96 96 GLU GLU A . n A 1 80 LEU 80 97 97 LEU LEU A . n A 1 81 ALA 81 98 98 ALA ALA A . n A 1 82 GLU 82 99 99 GLU GLU A . n A 1 83 MSE 83 100 100 MSE MSE A . n A 1 84 ILE 84 101 101 ILE ILE A . n A 1 85 GLU 85 102 102 GLU GLU A . n A 1 86 LYS 86 103 103 LYS LYS A . n A 1 87 GLU 87 104 104 GLU GLU A . n A 1 88 GLN 88 105 ? ? ? A . n A 1 89 PRO 89 106 ? ? ? A . n A 1 90 ARG 90 107 ? ? ? A . n A 1 91 GLN 91 108 ? ? ? A . n A 1 92 ASP 92 109 ? ? ? A . n A 1 93 GLY 93 110 ? ? ? A . n A 1 94 GLU 94 111 ? ? ? A . n A 1 95 GLU 95 112 ? ? ? A . n A 1 96 GLN 96 113 ? ? ? A . n A 1 97 PRO 97 114 ? ? ? A . n A 1 98 ARG 98 115 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 GLU 2 19 ? ? ? B . n B 1 3 ASP 3 20 ? ? ? B . n B 1 4 PRO 4 21 ? ? ? B . n B 1 5 GLN 5 22 22 GLN GLN B . n B 1 6 THR 6 23 23 THR THR B . n B 1 7 PHE 7 24 24 PHE PHE B . n B 1 8 GLU 8 25 25 GLU GLU B . n B 1 9 GLY 9 26 26 GLY GLY B . n B 1 10 ALA 10 27 27 ALA ALA B . n B 1 11 GLY 11 28 28 GLY GLY B . n B 1 12 VAL 12 29 29 VAL VAL B . n B 1 13 VAL 13 30 30 VAL VAL B . n B 1 14 PHE 14 31 31 PHE PHE B . n B 1 15 GLU 15 32 32 GLU GLU B . n B 1 16 VAL 16 33 33 VAL VAL B . n B 1 17 GLN 17 34 34 GLN GLN B . n B 1 18 VAL 18 35 35 VAL VAL B . n B 1 19 GLU 19 36 36 GLU GLU B . n B 1 20 LYS 20 37 37 LYS LYS B . n B 1 21 ASN 21 38 38 ASN ASN B . n B 1 22 LEU 22 39 39 LEU LEU B . n B 1 23 VAL 23 40 40 VAL VAL B . n B 1 24 ASP 24 41 41 ASP ASP B . n B 1 25 ILE 25 42 42 ILE ILE B . n B 1 26 ASP 26 43 43 ASP ASP B . n B 1 27 HIS 27 44 44 HIS HIS B . n B 1 28 ARG 28 45 45 ARG ARG B . n B 1 29 LEU 29 46 46 LEU LEU B . n B 1 30 TYR 30 47 47 TYR TYR B . n B 1 31 ARG 31 48 48 ARG ARG B . n B 1 32 LEU 32 49 49 LEU LEU B . n B 1 33 PRO 33 50 50 PRO PRO B . n B 1 34 ASN 34 51 51 ASN ASN B . n B 1 35 SER 35 52 52 SER SER B . n B 1 36 THR 36 53 53 THR THR B . n B 1 37 VAL 37 54 54 VAL VAL B . n B 1 38 ARG 38 55 55 ARG ARG B . n B 1 39 ASN 39 56 56 ASN ASN B . n B 1 40 GLY 40 57 57 GLY GLY B . n B 1 41 MSE 41 58 58 MSE MSE B . n B 1 42 PRO 42 59 59 PRO PRO B . n B 1 43 SER 43 60 60 SER SER B . n B 1 44 LEU 44 61 61 LEU LEU B . n B 1 45 PHE 45 62 62 PHE PHE B . n B 1 46 GLN 46 63 63 GLN GLN B . n B 1 47 VAL 47 64 64 VAL VAL B . n B 1 48 LYS 48 65 65 LYS LYS B . n B 1 49 PRO 49 66 66 PRO PRO B . n B 1 50 GLY 50 67 67 GLY GLY B . n B 1 51 SER 51 68 68 SER SER B . n B 1 52 VAL 52 69 69 VAL VAL B . n B 1 53 VAL 53 70 70 VAL VAL B . n B 1 54 SER 54 71 71 SER SER B . n B 1 55 TYR 55 72 72 TYR TYR B . n B 1 56 SER 56 73 73 SER SER B . n B 1 57 GLY 57 74 74 GLY GLY B . n B 1 58 THR 58 75 75 THR THR B . n B 1 59 VAL 59 76 76 VAL VAL B . n B 1 60 SER 60 77 77 SER SER B . n B 1 61 GLN 61 78 78 GLN GLN B . n B 1 62 PRO 62 79 79 PRO PRO B . n B 1 63 TRP 63 80 80 TRP TRP B . n B 1 64 SER 64 81 81 SER SER B . n B 1 65 THR 65 82 82 THR THR B . n B 1 66 ILE 66 83 83 ILE ILE B . n B 1 67 THR 67 84 84 THR THR B . n B 1 68 ASP 68 85 85 ASP ASP B . n B 1 69 ILE 69 86 86 ILE ILE B . n B 1 70 TYR 70 87 87 TYR TYR B . n B 1 71 ILE 71 88 88 ILE ILE B . n B 1 72 HIS 72 89 89 HIS HIS B . n B 1 73 LYS 73 90 90 LYS LYS B . n B 1 74 GLN 74 91 91 GLN GLN B . n B 1 75 MSE 75 92 92 MSE MSE B . n B 1 76 SER 76 93 93 SER SER B . n B 1 77 GLU 77 94 94 GLU GLU B . n B 1 78 GLN 78 95 95 GLN GLN B . n B 1 79 GLU 79 96 96 GLU GLU B . n B 1 80 LEU 80 97 97 LEU LEU B . n B 1 81 ALA 81 98 98 ALA ALA B . n B 1 82 GLU 82 99 ? ? ? B . n B 1 83 MSE 83 100 ? ? ? B . n B 1 84 ILE 84 101 ? ? ? B . n B 1 85 GLU 85 102 ? ? ? B . n B 1 86 LYS 86 103 ? ? ? B . n B 1 87 GLU 87 104 ? ? ? B . n B 1 88 GLN 88 105 ? ? ? B . n B 1 89 PRO 89 106 ? ? ? B . n B 1 90 ARG 90 107 ? ? ? B . n B 1 91 GLN 91 108 ? ? ? B . n B 1 92 ASP 92 109 ? ? ? B . n B 1 93 GLY 93 110 ? ? ? B . n B 1 94 GLU 94 111 ? ? ? B . n B 1 95 GLU 95 112 ? ? ? B . n B 1 96 GLN 96 113 ? ? ? B . n B 1 97 PRO 97 114 ? ? ? B . n B 1 98 ARG 98 115 ? ? ? B . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 116 116 CL CL A . D 3 NA 1 117 117 NA NA A . E 4 GOL 1 118 118 GOL GOL A . F 4 GOL 1 119 119 GOL GOL A . G 4 GOL 1 120 120 GOL GOL A . H 5 HOH 1 121 121 HOH HOH A . H 5 HOH 2 123 123 HOH HOH A . H 5 HOH 3 124 124 HOH HOH A . H 5 HOH 4 128 128 HOH HOH A . H 5 HOH 5 130 130 HOH HOH A . H 5 HOH 6 131 131 HOH HOH A . H 5 HOH 7 132 132 HOH HOH A . H 5 HOH 8 134 134 HOH HOH A . H 5 HOH 9 135 135 HOH HOH A . H 5 HOH 10 136 136 HOH HOH A . H 5 HOH 11 137 137 HOH HOH A . H 5 HOH 12 138 138 HOH HOH A . H 5 HOH 13 139 139 HOH HOH A . H 5 HOH 14 140 140 HOH HOH A . H 5 HOH 15 141 141 HOH HOH A . H 5 HOH 16 147 147 HOH HOH A . H 5 HOH 17 149 149 HOH HOH A . H 5 HOH 18 150 150 HOH HOH A . H 5 HOH 19 151 151 HOH HOH A . H 5 HOH 20 152 152 HOH HOH A . H 5 HOH 21 153 153 HOH HOH A . H 5 HOH 22 154 154 HOH HOH A . H 5 HOH 23 157 157 HOH HOH A . H 5 HOH 24 160 160 HOH HOH A . H 5 HOH 25 161 161 HOH HOH A . H 5 HOH 26 165 165 HOH HOH A . H 5 HOH 27 166 166 HOH HOH A . H 5 HOH 28 167 167 HOH HOH A . H 5 HOH 29 169 169 HOH HOH A . H 5 HOH 30 170 170 HOH HOH A . H 5 HOH 31 171 171 HOH HOH A . H 5 HOH 32 173 173 HOH HOH A . H 5 HOH 33 174 174 HOH HOH A . H 5 HOH 34 179 179 HOH HOH A . H 5 HOH 35 181 181 HOH HOH A . H 5 HOH 36 182 182 HOH HOH A . H 5 HOH 37 185 185 HOH HOH A . H 5 HOH 38 186 186 HOH HOH A . H 5 HOH 39 188 188 HOH HOH A . H 5 HOH 40 190 190 HOH HOH A . H 5 HOH 41 191 191 HOH HOH A . H 5 HOH 42 192 192 HOH HOH A . H 5 HOH 43 194 194 HOH HOH A . H 5 HOH 44 196 196 HOH HOH A . H 5 HOH 45 197 197 HOH HOH A . H 5 HOH 46 198 198 HOH HOH A . H 5 HOH 47 199 199 HOH HOH A . H 5 HOH 48 200 200 HOH HOH A . H 5 HOH 49 202 202 HOH HOH A . H 5 HOH 50 203 203 HOH HOH A . H 5 HOH 51 205 205 HOH HOH A . H 5 HOH 52 209 209 HOH HOH A . H 5 HOH 53 211 211 HOH HOH A . H 5 HOH 54 213 213 HOH HOH A . H 5 HOH 55 215 215 HOH HOH A . H 5 HOH 56 216 216 HOH HOH A . H 5 HOH 57 217 217 HOH HOH A . H 5 HOH 58 219 219 HOH HOH A . H 5 HOH 59 220 220 HOH HOH A . H 5 HOH 60 221 221 HOH HOH A . H 5 HOH 61 222 222 HOH HOH A . H 5 HOH 62 224 224 HOH HOH A . I 5 HOH 1 122 122 HOH HOH B . I 5 HOH 2 125 125 HOH HOH B . I 5 HOH 3 126 126 HOH HOH B . I 5 HOH 4 127 127 HOH HOH B . I 5 HOH 5 129 129 HOH HOH B . I 5 HOH 6 133 133 HOH HOH B . I 5 HOH 7 142 142 HOH HOH B . I 5 HOH 8 143 143 HOH HOH B . I 5 HOH 9 144 144 HOH HOH B . I 5 HOH 10 145 145 HOH HOH B . I 5 HOH 11 146 146 HOH HOH B . I 5 HOH 12 148 148 HOH HOH B . I 5 HOH 13 155 155 HOH HOH B . I 5 HOH 14 156 156 HOH HOH B . I 5 HOH 15 158 158 HOH HOH B . I 5 HOH 16 159 159 HOH HOH B . I 5 HOH 17 162 162 HOH HOH B . I 5 HOH 18 163 163 HOH HOH B . I 5 HOH 19 164 164 HOH HOH B . I 5 HOH 20 168 168 HOH HOH B . I 5 HOH 21 172 172 HOH HOH B . I 5 HOH 22 175 175 HOH HOH B . I 5 HOH 23 176 176 HOH HOH B . I 5 HOH 24 177 177 HOH HOH B . I 5 HOH 25 178 178 HOH HOH B . I 5 HOH 26 180 180 HOH HOH B . I 5 HOH 27 183 183 HOH HOH B . I 5 HOH 28 184 184 HOH HOH B . I 5 HOH 29 187 187 HOH HOH B . I 5 HOH 30 189 189 HOH HOH B . I 5 HOH 31 193 193 HOH HOH B . I 5 HOH 32 195 195 HOH HOH B . I 5 HOH 33 201 201 HOH HOH B . I 5 HOH 34 204 204 HOH HOH B . I 5 HOH 35 206 206 HOH HOH B . I 5 HOH 36 207 207 HOH HOH B . I 5 HOH 37 208 208 HOH HOH B . I 5 HOH 38 210 210 HOH HOH B . I 5 HOH 39 212 212 HOH HOH B . I 5 HOH 40 214 214 HOH HOH B . I 5 HOH 41 218 218 HOH HOH B . I 5 HOH 42 223 223 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 41 A MSE 58 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 92 ? MET SELENOMETHIONINE 3 A MSE 83 A MSE 100 ? MET SELENOMETHIONINE 4 B MSE 41 B MSE 58 ? MET SELENOMETHIONINE 5 B MSE 75 B MSE 92 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2390 ? 1 MORE -9 ? 1 'SSA (A^2)' 9520 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 3 ? A ASP 20 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? A THR 6 ? A THR 23 ? 1_555 88.1 ? 2 O ? A ASP 3 ? A ASP 20 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 OG1 ? A THR 6 ? A THR 23 ? 1_555 84.6 ? 3 O ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 OG1 ? A THR 6 ? A THR 23 ? 1_555 77.7 ? 4 O ? A ASP 3 ? A ASP 20 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 170 ? 1_555 162.3 ? 5 O ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 170 ? 1_555 96.3 ? 6 OG1 ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 170 ? 1_555 79.6 ? 7 O ? A ASP 3 ? A ASP 20 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 83.0 ? 8 O ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 98.6 ? 9 OG1 ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 167.1 ? 10 O ? H HOH . ? A HOH 170 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 185 ? 1_555 113.2 ? 11 O ? A ASP 3 ? A ASP 20 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 96.4 ? 12 O ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 155.8 ? 13 OG1 ? A THR 6 ? A THR 23 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 79.0 ? 14 O ? H HOH . ? A HOH 170 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 72.9 ? 15 O ? H HOH . ? A HOH 185 ? 1_555 NA ? D NA . ? A NA 117 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 105.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2017-11-08 3 'Structure model' 1 2 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_struct_conn_angle 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_ref_seq_dif.details' 30 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 3.1018 37.9085 5.6436 -0.0782 -0.0141 0.0061 0.0012 -0.0041 -0.0017 1.7830 1.0197 0.4848 -0.3821 -0.5649 -0.2781 0.0118 0.0069 -0.0187 0.0596 0.0124 0.0288 0.0639 -0.0158 -0.0168 'X-RAY DIFFRACTION' 2 ? refined 9.5912 20.7030 8.9127 -0.0451 -0.0822 -0.0631 0.0058 0.0183 0.0121 2.2512 3.9200 3.9756 0.3433 -0.3987 -0.3889 -0.1287 0.0026 0.1261 0.0959 -0.1606 0.0041 -0.1127 0.4149 -0.0190 # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 A 19 ? ? A 104 ? ? ? '{ A|19-104 }' 'X-RAY DIFFRACTION' 2 2 B 22 ? ? B 98 ? ? ? '{ B|22-98 }' 'X-RAY DIFFRACTION' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3TDQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 19-115) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 19 ? CG ? A GLU 2 CG 2 1 Y 1 A GLU 19 ? CD ? A GLU 2 CD 3 1 Y 1 A GLU 19 ? OE1 ? A GLU 2 OE1 4 1 Y 1 A GLU 19 ? OE2 ? A GLU 2 OE2 5 1 Y 1 A GLU 104 ? CG ? A GLU 87 CG 6 1 Y 1 A GLU 104 ? CD ? A GLU 87 CD 7 1 Y 1 A GLU 104 ? OE1 ? A GLU 87 OE1 8 1 Y 1 A GLU 104 ? OE2 ? A GLU 87 OE2 9 1 Y 1 B GLU 94 ? CG ? B GLU 77 CG 10 1 Y 1 B GLU 94 ? CD ? B GLU 77 CD 11 1 Y 1 B GLU 94 ? OE1 ? B GLU 77 OE1 12 1 Y 1 B GLU 94 ? OE2 ? B GLU 77 OE2 13 1 Y 1 B GLN 95 ? CG ? B GLN 78 CG 14 1 Y 1 B GLN 95 ? CD ? B GLN 78 CD 15 1 Y 1 B GLN 95 ? OE1 ? B GLN 78 OE1 16 1 Y 1 B GLN 95 ? NE2 ? B GLN 78 NE2 17 1 Y 1 B LEU 97 ? CG ? B LEU 80 CG 18 1 Y 1 B LEU 97 ? CD1 ? B LEU 80 CD1 19 1 Y 1 B LEU 97 ? CD2 ? B LEU 80 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 105 ? A GLN 88 3 1 Y 1 A PRO 106 ? A PRO 89 4 1 Y 1 A ARG 107 ? A ARG 90 5 1 Y 1 A GLN 108 ? A GLN 91 6 1 Y 1 A ASP 109 ? A ASP 92 7 1 Y 1 A GLY 110 ? A GLY 93 8 1 Y 1 A GLU 111 ? A GLU 94 9 1 Y 1 A GLU 112 ? A GLU 95 10 1 Y 1 A GLN 113 ? A GLN 96 11 1 Y 1 A PRO 114 ? A PRO 97 12 1 Y 1 A ARG 115 ? A ARG 98 13 1 Y 1 B GLY 0 ? B GLY 1 14 1 Y 1 B GLU 19 ? B GLU 2 15 1 Y 1 B ASP 20 ? B ASP 3 16 1 Y 1 B PRO 21 ? B PRO 4 17 1 Y 1 B GLU 99 ? B GLU 82 18 1 Y 1 B MSE 100 ? B MSE 83 19 1 Y 1 B ILE 101 ? B ILE 84 20 1 Y 1 B GLU 102 ? B GLU 85 21 1 Y 1 B LYS 103 ? B LYS 86 22 1 Y 1 B GLU 104 ? B GLU 87 23 1 Y 1 B GLN 105 ? B GLN 88 24 1 Y 1 B PRO 106 ? B PRO 89 25 1 Y 1 B ARG 107 ? B ARG 90 26 1 Y 1 B GLN 108 ? B GLN 91 27 1 Y 1 B ASP 109 ? B ASP 92 28 1 Y 1 B GLY 110 ? B GLY 93 29 1 Y 1 B GLU 111 ? B GLU 94 30 1 Y 1 B GLU 112 ? B GLU 95 31 1 Y 1 B GLN 113 ? B GLN 96 32 1 Y 1 B PRO 114 ? B PRO 97 33 1 Y 1 B ARG 115 ? B ARG 98 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SODIUM ION' NA 4 GLYCEROL GOL 5 water HOH #