HEADER TRANSFERASE 17-AUG-11 3TG4 TITLE STRUCTURE OF SMYD2 IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B, HISTONE METHYLTRANSFERASE SMYD2, LYSINE N- COMPND 5 METHYLTRANSFERASE 3C, SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-, 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS SET DOMAIN, METHYLTRANSFERASE, CO FACTOR BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZHAO,L.WANG REVDAT 3 01-NOV-23 3TG4 1 REMARK LINK REVDAT 2 14-SEP-11 3TG4 1 JRNL REVDAT 1 31-AUG-11 3TG4 0 JRNL AUTH L.WANG,L.LI,H.ZHANG,X.LUO,J.DAI,S.ZHOU,J.GU,J.ZHU,P.ATADJA, JRNL AUTH 2 C.LU,E.LI,K.ZHAO JRNL TITL STRUCTURE OF HUMAN SMYD2 REVEALS THE BASIS OF P53 TUMOR JRNL TITL 2 SUPPRESSOR METHYLATION JRNL REF J.BIOL.CHEM. 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21880715 JRNL DOI 10.1074/JBC.M111.262410 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3578 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4812 ; 1.179 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;35.032 ;24.251 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;15.232 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.715 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2668 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2136 ; 0.447 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3441 ; 0.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 1.777 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1371 ; 2.675 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2450 6.0280 20.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0364 REMARK 3 T33: 0.0730 T12: -0.0119 REMARK 3 T13: 0.1044 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 1.3301 L22: 4.1679 REMARK 3 L33: 2.2103 L12: -0.6188 REMARK 3 L13: -0.7672 L23: 1.6302 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: 0.0204 S13: 0.0369 REMARK 3 S21: -0.2995 S22: 0.1383 S23: -0.4690 REMARK 3 S31: -0.3126 S32: 0.0689 S33: -0.2950 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8140 1.2330 -7.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.9973 T22: 0.3777 REMARK 3 T33: 0.1802 T12: 0.3909 REMARK 3 T13: -0.2107 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 10.9211 L22: 4.3171 REMARK 3 L33: 10.0799 L12: 2.0211 REMARK 3 L13: -6.7975 L23: 0.5237 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.7570 S13: 0.5508 REMARK 3 S21: -0.9004 S22: 0.0688 S23: 0.5098 REMARK 3 S31: -1.2836 S32: -0.4977 S33: -0.0759 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5700 -14.3830 9.3440 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.1087 REMARK 3 T33: 0.0750 T12: 0.0556 REMARK 3 T13: 0.0072 T23: -0.0953 REMARK 3 L TENSOR REMARK 3 L11: 2.9501 L22: 6.2309 REMARK 3 L33: 2.9068 L12: -0.1292 REMARK 3 L13: 0.8099 L23: 0.8933 REMARK 3 S TENSOR REMARK 3 S11: 0.2710 S12: 0.0956 S13: -0.1709 REMARK 3 S21: -0.5755 S22: -0.2947 S23: 0.2948 REMARK 3 S31: 0.1271 S32: -0.2006 S33: 0.0237 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : TOROIDAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3MEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M LITHIUM CHLORIDE, 0.1M TRIS-HCL REMARK 280 (PH 8.5), 32% PEG 4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 -178.22 -171.36 REMARK 500 ASN A 101 42.31 -143.51 REMARK 500 VAL A 277 53.62 -98.56 REMARK 500 LEU A 282 -5.11 68.62 REMARK 500 SER A 283 -43.82 73.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 435 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 109.6 REMARK 620 3 CYS A 74 SG 105.1 98.2 REMARK 620 4 CYS A 78 SG 107.3 118.3 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 436 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 110.9 REMARK 620 3 HIS A 86 NE2 112.8 104.3 REMARK 620 4 CYS A 90 SG 107.7 115.8 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 437 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 117.0 REMARK 620 3 CYS A 264 SG 108.7 108.2 REMARK 620 4 CYS A 267 SG 90.9 117.2 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 434 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 442 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TG5 RELATED DB: PDB DBREF 3TG4 A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQRES 1 A 433 MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG PHE CYS SEQRES 2 A 433 SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU GLN PRO SEQRES 3 A 433 PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO ALA TYR SEQRES 4 A 433 ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN HIS CYS SEQRES 5 A 433 GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER LYS CYS SEQRES 6 A 433 GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL GLU CYS SEQRES 7 A 433 GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU CYS SER SEQRES 8 A 433 PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SER GLU SEQRES 9 A 433 THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS GLN LYS SEQRES 10 A 433 ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU LEU ALA SEQRES 11 A 433 VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU ASP ASN SEQRES 12 A 433 GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA ALA LEU SEQRES 13 A 433 HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO ASP ASN SEQRES 14 A 433 ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN CYS ASN SEQRES 15 A 433 GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS LEU GLY SEQRES 16 A 433 SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN HIS SER SEQRES 17 A 433 CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY THR LEU SEQRES 18 A 433 ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO GLY GLU SEQRES 19 A 433 GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR PRO THR SEQRES 20 A 433 GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR PHE PHE SEQRES 21 A 433 THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP LYS ASP SEQRES 22 A 433 LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP PRO PRO SEQRES 23 A 433 LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR ALA ARG SEQRES 24 A 433 ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS TYR LYS SEQRES 25 A 433 SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SER GLN SEQRES 26 A 433 GLU LYS MET SER SER VAL PHE GLU ASP SER ASN VAL TYR SEQRES 27 A 433 MET LEU HIS MET MET TYR GLN ALA MET GLY VAL CYS LEU SEQRES 28 A 433 TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR GLY GLN SEQRES 29 A 433 LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO LEU TYR SEQRES 30 A 433 SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU GLY ARG SEQRES 31 A 433 LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY GLU LYS SEQRES 32 A 433 ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL ALA HIS SEQRES 33 A 433 GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS GLN GLU SEQRES 34 A 433 ILE GLU SER HIS HET SAM A 434 27 HET ZN A 435 1 HET ZN A 436 1 HET ZN A 437 1 HET GOL A 438 6 HET GOL A 439 6 HET GOL A 440 6 HET GOL A 441 6 HET GOL A 442 6 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 ZN 3(ZN 2+) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 HOH *237(H2 O) HELIX 1 1 VAL A 45 ARG A 48 5 4 HELIX 2 2 ASN A 75 GLY A 97 1 23 HELIX 3 3 GLU A 98 TRP A 100 5 3 HELIX 4 4 SER A 103 HIS A 119 1 17 HELIX 5 5 ALA A 130 PHE A 134 5 5 HELIX 6 6 HIS A 137 LEU A 141 5 5 HELIX 7 7 ASP A 142 SER A 161 1 20 HELIX 8 8 ASP A 168 GLY A 183 1 16 HELIX 9 9 PHE A 199 LEU A 204 1 6 HELIX 10 10 PRO A 246 PHE A 259 1 14 HELIX 11 11 CYS A 264 LYS A 270 1 7 HELIX 12 12 LYS A 272 VAL A 277 1 6 HELIX 13 13 LYS A 287 LYS A 309 1 23 HELIX 14 14 SER A 313 SER A 329 1 17 HELIX 15 15 ASN A 336 MET A 353 1 18 HELIX 16 16 ASP A 355 TYR A 374 1 20 HELIX 17 17 SER A 378 LEU A 395 1 18 HELIX 18 18 HIS A 397 HIS A 416 1 20 HELIX 19 19 HIS A 420 GLU A 431 1 12 SHEET 1 A 2 LEU A 9 CYS A 13 0 SHEET 2 A 2 ARG A 19 ALA A 23 -1 O GLY A 20 N PHE A 12 SHEET 1 B 3 LEU A 32 PRO A 37 0 SHEET 2 B 3 LEU A 221 ALA A 226 -1 O VAL A 224 N LEU A 33 SHEET 3 B 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223 SHEET 1 C 3 ALA A 40 LEU A 43 0 SHEET 2 C 3 HIS A 193 ILE A 198 -1 O ILE A 198 N ALA A 40 SHEET 3 C 3 PHE A 184 GLU A 187 -1 N ILE A 186 O LEU A 194 SHEET 1 D 2 SER A 63 LYS A 64 0 SHEET 2 D 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 E 2 ASN A 206 HIS A 207 0 SHEET 2 E 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 435 1555 1555 2.34 LINK SG CYS A 55 ZN ZN A 435 1555 1555 2.33 LINK SG CYS A 65 ZN ZN A 436 1555 1555 2.34 LINK SG CYS A 68 ZN ZN A 436 1555 1555 2.30 LINK SG CYS A 74 ZN ZN A 435 1555 1555 2.36 LINK SG CYS A 78 ZN ZN A 435 1555 1555 2.33 LINK NE2 HIS A 86 ZN ZN A 436 1555 1555 2.15 LINK SG CYS A 90 ZN ZN A 436 1555 1555 2.32 LINK SG CYS A 209 ZN ZN A 437 1555 1555 2.36 LINK SG CYS A 262 ZN ZN A 437 1555 1555 2.32 LINK SG CYS A 264 ZN ZN A 437 1555 1555 2.34 LINK SG CYS A 267 ZN ZN A 437 1555 1555 2.33 SITE 1 AC1 18 GLY A 16 LYS A 17 ARG A 19 HIS A 137 SITE 2 AC1 18 CYS A 181 ASN A 182 ALA A 203 LEU A 204 SITE 3 AC1 18 ASN A 206 HIS A 207 TYR A 240 TYR A 258 SITE 4 AC1 18 PHE A 260 GOL A 438 HOH A 597 HOH A 609 SITE 5 AC1 18 HOH A 625 HOH A 639 SITE 1 AC2 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AC3 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AC4 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 SITE 1 AC5 10 CYS A 181 ASN A 182 GLY A 183 PHE A 184 SITE 2 AC5 10 ALA A 203 TYR A 240 TYR A 258 SAM A 434 SITE 3 AC5 10 GOL A 439 HOH A 463 SITE 1 AC6 6 PHE A 184 THR A 185 TYR A 240 GOL A 438 SITE 2 AC6 6 HOH A 535 HOH A 561 SITE 1 AC7 9 CYS A 209 LEU A 243 ARG A 250 GLU A 266 SITE 2 AC7 9 LYS A 272 LYS A 276 HIS A 373 TYR A 374 SITE 3 AC7 9 PRO A 375 SITE 1 AC8 4 GLU A 190 ARG A 390 LEU A 391 HOH A 617 SITE 1 AC9 6 ALA A 38 TYR A 39 LYS A 115 HOH A 596 SITE 2 AC9 6 HOH A 624 HOH A 648 CRYST1 52.480 67.480 141.970 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007044 0.00000