HEADER VIRAL PROTEIN 18-AUG-11 3TH0 TITLE P22 TAILSPIKE COMPLEXED WITH S.PARATYPHI O ANTIGEN OCTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL TAIL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 109-657; COMPND 5 SYNONYM: LATE PROTEIN GP9, TAILSPIKE-PROTEIN, TSP, ENDORHAMNOSIDASE, COMPND 6 ENDO-1,3-ALPHA-L-RHAMNOSIDASE; COMPND 7 EC: 3.2.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P22; SOURCE 3 ORGANISM_TAXID: 10754; SOURCE 4 GENE: 9, PHAGE P22 GENE 9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTSF1 KEYWDS VIRAL ADHESION PROTEIN, RECEPTOR, ENDOGLYCOSIDASE, CARBOHYDRATE, CELL KEYWDS 2 RECEPTOR, RECOGNITION, BINDING PROTEIN LIPOPOLYSACCHARIDE, BETA KEYWDS 3 HELIX, HOST RECOGNITION, BACTERIOPHAGE P22 BASEPLATE, HYDROLASE, KEYWDS 4 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ANDRES,U.GOHLKE,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 4 13-SEP-23 3TH0 1 HETSYN REVDAT 3 29-JUL-20 3TH0 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-AUG-14 3TH0 1 JRNL REVDAT 1 29-AUG-12 3TH0 0 JRNL AUTH D.ANDRES,U.GOHLKE,N.K.BROEKER,S.SCHULZE,W.RABSCH, JRNL AUTH 2 U.HEINEMANN,S.BARBIRZ,R.SECKLER JRNL TITL AN ESSENTIAL SEROTYPE RECOGNITION POCKET ON PHAGE P22 JRNL TITL 2 TAILSPIKE PROTEIN FORCES SALMONELLA ENTERICA SEROVAR JRNL TITL 3 PARATYPHI A O-ANTIGEN FRAGMENTS TO BIND AS NONSOLUTION JRNL TITL 4 CONFORMERS. JRNL REF GLYCOBIOLOGY V. 23 486 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 23292517 JRNL DOI 10.1093/GLYCOB/CWS224 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.STEINBACHER,R.SECKLER,S.MILLER,B.STEIPE,R.HUBER,P.REINEMER REMARK 1 TITL CRYSTAL STRUCTURE OF P22 TAILSPIKE PROTEIN: INTERDIGITATED REMARK 1 TITL 2 SUBUNITS IN A THERMOSTABLE TRIMER. REMARK 1 REF SCIENCE V. 265 383 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 8023158 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.STEINBACHER,U.BAXA,S.MILLER,A.WEINTRAUB,R.SECKLER,R.HUBER REMARK 1 TITL CRYSTAL STRUCTURE OF PHAGE P22 TAILSPIKE PROTEIN COMPLEXED REMARK 1 TITL 2 WITH SALMONELLA SP. O-ANTIGEN RECEPTORS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 93 10584 1996 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 8855221 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1690 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.286 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4478 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2977 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6103 ; 1.372 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7214 ; 0.831 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 579 ; 6.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.937 ;24.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;11.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 9.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5018 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2778 ; 0.566 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1167 ; 0.153 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4473 ; 1.028 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 1.719 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 2.814 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6017 -8.4299 20.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0052 REMARK 3 T33: 0.0227 T12: -0.0056 REMARK 3 T13: 0.0068 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.0603 L22: 0.0741 REMARK 3 L33: 0.3779 L12: 0.0229 REMARK 3 L13: -0.0031 L23: 0.0698 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0040 S13: -0.0241 REMARK 3 S21: 0.0046 S22: -0.0012 S23: 0.0176 REMARK 3 S31: 0.0177 S32: -0.0186 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3080 -0.1537 25.3084 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0025 REMARK 3 T33: 0.0129 T12: -0.0002 REMARK 3 T13: -0.0018 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.1093 L22: 0.0869 REMARK 3 L33: 0.0863 L12: 0.0001 REMARK 3 L13: -0.0101 L23: 0.0387 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0073 S13: -0.0076 REMARK 3 S21: 0.0195 S22: -0.0044 S23: -0.0045 REMARK 3 S31: 0.0159 S32: -0.0031 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 482 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2809 15.7807 39.6251 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0156 REMARK 3 T33: 0.0038 T12: -0.0102 REMARK 3 T13: -0.0057 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9056 L22: 0.0902 REMARK 3 L33: 0.3731 L12: -0.2709 REMARK 3 L13: 0.3809 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0827 S13: -0.0220 REMARK 3 S21: 0.0158 S22: 0.0161 S23: 0.0020 REMARK 3 S31: -0.0157 S32: -0.0321 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 522 A 666 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0375 40.0031 49.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0214 REMARK 3 T33: 0.0124 T12: -0.0030 REMARK 3 T13: -0.0096 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.1613 L22: 0.1347 REMARK 3 L33: 0.0838 L12: 0.1309 REMARK 3 L13: 0.1087 L23: 0.0838 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0218 S13: 0.0143 REMARK 3 S21: 0.0414 S22: -0.0187 S23: 0.0022 REMARK 3 S31: 0.0091 S32: -0.0024 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5809 -10.4138 33.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0203 REMARK 3 T33: 0.0261 T12: -0.0056 REMARK 3 T13: 0.0019 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.4735 L22: 0.0723 REMARK 3 L33: 2.7011 L12: -0.3239 REMARK 3 L13: -1.9950 L23: 0.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: 0.0645 S13: -0.0690 REMARK 3 S21: 0.0263 S22: -0.0113 S23: 0.0155 REMARK 3 S31: 0.1182 S32: -0.0870 S33: 0.0963 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS, DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR, MD2 REMARK 200 MICRODIFFRACTOMETER, MK3- REMARK 200 MINIKAPPA REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 33.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRIES 2VFM, 2VFN, AND 2VFQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 PHOSPHATE OVER RESERVOIR 1.0 AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 PHOSPHATE, PH 10, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K. ADDITION OF 2MM S.PARATYPHI O ANTIGEN OCTASACCHARIDE IN REMARK 280 0.1M TRIS, 1M SODIUM PHOSPHATE, PH 7.5, MICRODIALYSIS, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.97150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.97150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.97150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.97150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.97150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.97150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 59.97150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 59.97150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 59.97150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 59.97150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 59.97150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 59.97150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 59.97150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 59.97150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 59.97150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 59.97150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 59.97150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 59.97150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1140 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1272 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1279 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1340 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 108 REMARK 465 ASP A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111 REMARK 465 GLN A 112 REMARK 465 THR A 509 REMARK 465 ASP A 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 142 -72.44 -132.82 REMARK 500 PRO A 206 48.05 -81.46 REMARK 500 ASN A 257 54.68 -142.73 REMARK 500 TYR A 328 -146.94 62.34 REMARK 500 VAL A 331 -141.32 -123.41 REMARK 500 GLU A 359 -99.83 -113.49 REMARK 500 TRP A 391 -102.98 -107.02 REMARK 500 ASN A 403 74.96 -152.70 REMARK 500 ASN A 452 61.55 61.21 REMARK 500 ILE A 504 124.03 83.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TYV RELATED DB: PDB REMARK 900 P22 TAILSPIKE WITHOUT LIGAND REMARK 900 RELATED ID: 1TYX RELATED DB: PDB REMARK 900 P22 TAILSPIKE WITH S.TYPHIMURIUM OCTASACCHARIDE LIGAND REMARK 900 RELATED ID: 1TYU RELATED DB: PDB REMARK 900 P22 TAILSPIKE WITH S.ENTERITIDIS OCTASACCHARIDE LIGAND DBREF 3TH0 A 108 666 UNP P12528 TSPE_BPP22 109 667 SEQADV 3TH0 SER A 513 UNP P12528 GLY 514 CONFLICT SEQRES 1 A 559 TYR ASP PRO ASP GLN TYR SER ILE GLU ALA ASP LYS LYS SEQRES 2 A 559 PHE LYS TYR SER VAL LYS LEU SER ASP TYR PRO THR LEU SEQRES 3 A 559 GLN ASP ALA ALA SER ALA ALA VAL ASP GLY LEU LEU ILE SEQRES 4 A 559 ASP ARG ASP TYR ASN PHE TYR GLY GLY GLU THR VAL ASP SEQRES 5 A 559 PHE GLY GLY LYS VAL LEU THR ILE GLU CYS LYS ALA LYS SEQRES 6 A 559 PHE ILE GLY ASP GLY ASN LEU ILE PHE THR LYS LEU GLY SEQRES 7 A 559 LYS GLY SER ARG ILE ALA GLY VAL PHE MET GLU SER THR SEQRES 8 A 559 THR THR PRO TRP VAL ILE LYS PRO TRP THR ASP ASP ASN SEQRES 9 A 559 GLN TRP LEU THR ASP ALA ALA ALA VAL VAL ALA THR LEU SEQRES 10 A 559 LYS GLN SER LYS THR ASP GLY TYR GLN PRO THR VAL SER SEQRES 11 A 559 ASP TYR VAL LYS PHE PRO GLY ILE GLU THR LEU LEU PRO SEQRES 12 A 559 PRO ASN ALA LYS GLY GLN ASN ILE THR SER THR LEU GLU SEQRES 13 A 559 ILE ARG GLU CYS ILE GLY VAL GLU VAL HIS ARG ALA SER SEQRES 14 A 559 GLY LEU MET ALA GLY PHE LEU PHE ARG GLY CYS HIS PHE SEQRES 15 A 559 CYS LYS MET VAL ASP ALA ASN ASN PRO SER GLY GLY LYS SEQRES 16 A 559 ASP GLY ILE ILE THR PHE GLU ASN LEU SER GLY ASP TRP SEQRES 17 A 559 GLY LYS GLY ASN TYR VAL ILE GLY GLY ARG THR SER TYR SEQRES 18 A 559 GLY SER VAL SER SER ALA GLN PHE LEU ARG ASN ASN GLY SEQRES 19 A 559 GLY PHE GLU ARG ASP GLY GLY VAL ILE GLY PHE THR SER SEQRES 20 A 559 TYR ARG ALA GLY GLU SER GLY VAL LYS THR TRP GLN GLY SEQRES 21 A 559 THR VAL GLY SER THR THR SER ARG ASN TYR ASN LEU GLN SEQRES 22 A 559 PHE ARG ASP SER VAL VAL ILE TYR PRO VAL TRP ASP GLY SEQRES 23 A 559 PHE ASP LEU GLY ALA ASP THR ASP MET ASN PRO GLU LEU SEQRES 24 A 559 ASP ARG PRO GLY ASP TYR PRO ILE THR GLN TYR PRO LEU SEQRES 25 A 559 HIS GLN LEU PRO LEU ASN HIS LEU ILE ASP ASN LEU LEU SEQRES 26 A 559 VAL ARG GLY ALA LEU GLY VAL GLY PHE GLY MET ASP GLY SEQRES 27 A 559 LYS GLY MET TYR VAL SER ASN ILE THR VAL GLU ASP CYS SEQRES 28 A 559 ALA GLY SER GLY ALA TYR LEU LEU THR HIS GLU SER VAL SEQRES 29 A 559 PHE THR ASN ILE ALA ILE ILE ASP THR ASN THR LYS ASP SEQRES 30 A 559 PHE GLN ALA ASN GLN ILE TYR ILE SER GLY ALA CYS ARG SEQRES 31 A 559 VAL ASN GLY LEU ARG LEU ILE GLY ILE ARG SER THR ASP SEQRES 32 A 559 GLY GLN SER LEU THR ILE ASP ALA PRO ASN SER THR VAL SEQRES 33 A 559 SER GLY ILE THR GLY MET VAL ASP PRO SER ARG ILE ASN SEQRES 34 A 559 VAL ALA ASN LEU ALA GLU GLU GLY LEU GLY ASN ILE ARG SEQRES 35 A 559 ALA ASN SER PHE GLY TYR ASP SER ALA ALA ILE LYS LEU SEQRES 36 A 559 ARG ILE HIS LYS LEU SER LYS THR LEU ASP SER GLY ALA SEQRES 37 A 559 LEU TYR SER HIS ILE ASN GLY GLY ALA GLY SER GLY SER SEQRES 38 A 559 ALA TYR THR GLN LEU THR ALA ILE SER GLY SER THR PRO SEQRES 39 A 559 ASP ALA VAL SER LEU LYS VAL ASN HIS LYS ASP CYS ARG SEQRES 40 A 559 GLY ALA GLU ILE PRO PHE VAL PRO ASP ILE ALA SER ASP SEQRES 41 A 559 ASP PHE ILE LYS ASP SER SER CYS PHE LEU PRO TYR TRP SEQRES 42 A 559 GLU ASN ASN SER THR SER LEU LYS ALA LEU VAL LYS LYS SEQRES 43 A 559 PRO ASN GLY GLU LEU VAL ARG LEU THR LEU ALA THR LEU HET RAM B 1 11 HET MAN B 2 11 HET GLA B 3 11 HET RAM B 4 10 HET MAN B 5 11 HET GLA B 6 11 HET PZU B 7 9 HET PZU B 8 9 HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM PZU ALPHA-D-PARATOPYRANOSE HETNAM GOL GLYCEROL HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN PZU ALPHA-D-PARATOSE; 3,6-DIDEOXY-ALPHA-D-RIBO- HETSYN 2 PZU HEXOPYRANOSE; 3,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 3,6- HETSYN 3 PZU DIDEOXY-ALPHA-D-ALLOPYRANOSE; 3-DEOXY-ALPHA-D- HETSYN 4 PZU QUINOVOPYRANOSE; D-PARATOSE; PARATOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 RAM 2(C6 H12 O5) FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GLA 2(C6 H12 O6) FORMUL 2 PZU 2(C6 H12 O4) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *660(H2 O) HELIX 1 1 TYR A 113 PHE A 121 1 9 HELIX 2 2 SER A 128 TYR A 130 5 3 HELIX 3 3 THR A 132 ALA A 140 1 9 HELIX 4 4 ASP A 216 THR A 223 1 8 HELIX 5 5 THR A 235 PHE A 242 1 8 HELIX 6 6 GLY A 244 LEU A 249 1 6 HELIX 7 7 PRO A 250 LYS A 254 5 5 HELIX 8 8 ASP A 531 SER A 533 5 3 HELIX 9 9 HIS A 610 CYS A 613 5 4 HELIX 10 10 SER A 626 ILE A 630 5 5 HELIX 11 11 ASN A 642 THR A 645 5 4 SHEET 1 A12 ARG A 497 LEU A 503 0 SHEET 2 A12 VAL A 471 ILE A 478 1 N PHE A 472 O ASN A 499 SHEET 3 A12 TYR A 449 GLU A 456 1 N VAL A 455 O ILE A 478 SHEET 4 A12 LEU A 427 ARG A 434 1 N LEU A 431 O THR A 454 SHEET 5 A12 GLN A 380 ILE A 387 1 N PHE A 381 O LEU A 427 SHEET 6 A12 THR A 353 TYR A 355 1 N SER A 354 O ILE A 387 SHEET 7 A12 ARG A 325 TYR A 328 1 N THR A 326 O TYR A 355 SHEET 8 A12 ASN A 296 GLY A 300 1 N GLY A 300 O SER A 327 SHEET 9 A12 SER A 276 ARG A 285 1 N ALA A 280 O SER A 299 SHEET 10 A12 PHE A 194 GLU A 196 1 N MET A 195 O LEU A 278 SHEET 11 A12 PHE A 173 ILE A 174 1 N PHE A 173 O PHE A 194 SHEET 12 A12 TYR A 150 ASN A 151 1 N TYR A 150 O ILE A 174 SHEET 1 B10 LEU A 427 ARG A 434 0 SHEET 2 B10 GLN A 380 ILE A 387 1 N PHE A 381 O LEU A 427 SHEET 3 B10 GLY A 348 ILE A 350 1 N VAL A 349 O GLN A 380 SHEET 4 B10 TYR A 320 ILE A 322 1 N VAL A 321 O ILE A 350 SHEET 5 B10 LYS A 291 VAL A 293 1 N MET A 292 O TYR A 320 SHEET 6 B10 GLU A 271 HIS A 273 1 N VAL A 272 O VAL A 293 SHEET 7 B10 ARG A 189 ALA A 191 1 N ILE A 190 O HIS A 273 SHEET 8 B10 THR A 166 CYS A 169 1 N ILE A 167 O ARG A 189 SHEET 9 B10 GLY A 143 ILE A 146 1 N ILE A 146 O GLU A 168 SHEET 10 B10 SER A 124 LYS A 126 1 N VAL A 125 O LEU A 145 SHEET 1 C 4 SER A 276 ARG A 285 0 SHEET 2 C 4 SER A 260 ARG A 265 1 N LEU A 262 O LEU A 283 SHEET 3 C 4 GLY A 177 THR A 182 1 N PHE A 181 O GLU A 263 SHEET 4 C 4 THR A 157 ASP A 159 1 N VAL A 158 O ILE A 180 SHEET 1 D10 SER A 276 ARG A 285 0 SHEET 2 D10 ILE A 306 GLU A 309 1 O THR A 307 N PHE A 284 SHEET 3 D10 ALA A 334 LEU A 337 1 O LEU A 337 N PHE A 308 SHEET 4 D10 VAL A 362 THR A 364 1 O LYS A 363 N ALA A 334 SHEET 5 D10 PHE A 394 LEU A 396 1 O ASP A 395 N VAL A 362 SHEET 6 D10 PHE A 441 LYS A 446 1 O GLY A 442 N PHE A 394 SHEET 7 D10 ALA A 463 HIS A 468 1 O LEU A 466 N MET A 443 SHEET 8 D10 ILE A 490 ILE A 492 1 O TYR A 491 N LEU A 465 SHEET 9 D10 ILE A 516 THR A 527 1 O ASP A 517 N ILE A 490 SHEET 10 D10 ARG A 497 LEU A 503 1 N LEU A 503 O THR A 527 SHEET 1 E 2 ILE A 516 THR A 527 0 SHEET 2 E 2 ILE A 535 LEU A 540 1 O ASN A 536 N ALA A 518 SHEET 1 F 2 TRP A 202 VAL A 203 0 SHEET 2 F 2 LYS A 225 GLN A 226 -1 O LYS A 225 N VAL A 203 SHEET 1 G 2 THR A 368 VAL A 369 0 SHEET 2 G 2 THR A 372 THR A 373 -1 O THR A 372 N VAL A 369 SHEET 1 H 5 SER A 557 LEU A 562 0 SHEET 2 H 5 GLY A 574 ILE A 580 -1 O GLY A 574 N LEU A 562 SHEET 3 H 5 ALA A 589 SER A 597 -1 O TYR A 590 N HIS A 579 SHEET 4 H 5 THR A 600 VAL A 608 -1 O LEU A 606 N LEU A 593 SHEET 5 H 5 ALA A 616 GLU A 617 -1 O GLU A 617 N LYS A 607 SHEET 1 I 3 CYS A 635 GLU A 641 0 SHEET 2 I 3 SER A 646 LYS A 652 -1 O LYS A 648 N TYR A 639 SHEET 3 I 3 LEU A 658 ALA A 664 -1 O VAL A 659 N VAL A 651 LINK O4 RAM B 1 C1 MAN B 2 1555 1555 1.40 LINK O2 MAN B 2 C1 GLA B 3 1555 1555 1.44 LINK O3 MAN B 2 C1 PZU B 8 1555 1555 1.41 LINK O3 GLA B 3 C1 RAM B 4 1555 1555 1.44 LINK O4 RAM B 4 C1 MAN B 5 1555 1555 1.43 LINK O2 MAN B 5 C1 GLA B 6 1555 1555 1.41 LINK O3 MAN B 5 C1 PZU B 7 1555 1555 1.44 CRYST1 119.943 119.943 119.943 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008337 0.00000