HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-AUG-11 3THB TITLE STRUCTURE OF PLK1 KINASE DOMAIN IN COMPLEX WITH A BENZOLACTAM-DERIVED TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 13-345; COMPND 5 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 6 13, STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE DOMAIN, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.SINTCHAK REVDAT 4 13-SEP-23 3THB 1 COMPND REMARK SEQADV HETNAM REVDAT 3 08-NOV-17 3THB 1 REMARK REVDAT 2 25-JAN-12 3THB 1 JRNL REVDAT 1 23-NOV-11 3THB 0 JRNL AUTH M.O.DUFFEY,T.J.VOS,R.ADAMS,J.ALLEY,J.ANTHONY,C.BARRETT, JRNL AUTH 2 I.BHARATHAN,D.BOWMAN,N.J.BUMP,R.CHAU,C.CULLIS,D.L.DRISCOLL, JRNL AUTH 3 A.ELDER,N.FORSYTH,J.FRAZER,J.GUO,L.GUO,M.L.HYER,D.JANOWICK, JRNL AUTH 4 B.KULKARNI,S.J.LAI,K.LASKY,G.LI,J.LI,D.LIAO,J.LITTLE,B.PENG, JRNL AUTH 5 M.G.QIAN,D.J.REYNOLDS,M.REZAEI,M.P.SCOTT,T.B.SELLS,V.SHINDE, JRNL AUTH 6 Q.J.SHI,M.D.SINTCHAK,F.SOUCY,K.T.SPROTT,S.G.STROUD,M.NESTOR, JRNL AUTH 7 I.VISIERS,G.WEATHERHEAD,Y.YE,N.D'AMORE JRNL TITL DISCOVERY OF A POTENT AND ORALLY BIOAVAILABLE JRNL TITL 2 BENZOLACTAM-DERIVED INHIBITOR OF POLO-LIKE KINASE 1 JRNL TITL 3 (MLN0905). JRNL REF J.MED.CHEM. V. 55 197 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22070629 JRNL DOI 10.1021/JM2011172 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 11950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.57000 REMARK 3 B22 (A**2) : 5.57000 REMARK 3 B33 (A**2) : -8.36000 REMARK 3 B12 (A**2) : 2.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.599 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2329 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3160 ; 1.394 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.124 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;34.006 ;22.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;17.075 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1762 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 1.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2307 ; 2.730 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 4.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 6.282 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -52.2691 18.9564 14.9651 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 1.6203 REMARK 3 T33: 0.0750 T12: 0.2963 REMARK 3 T13: -0.0787 T23: -0.3417 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 9.8233 REMARK 3 L33: 5.7236 L12: -1.4263 REMARK 3 L13: 0.1285 L23: 2.5740 REMARK 3 S TENSOR REMARK 3 S11: -0.6348 S12: -0.1061 S13: -0.1357 REMARK 3 S21: -0.4539 S22: 0.0837 S23: -0.5003 REMARK 3 S31: -0.1569 S32: -2.9690 S33: 0.5511 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): -40.1187 15.2292 14.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.6235 T22: 0.5951 REMARK 3 T33: 0.3542 T12: 0.1342 REMARK 3 T13: -0.0438 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.7754 L22: 0.7565 REMARK 3 L33: 6.8976 L12: -0.0270 REMARK 3 L13: -0.4508 L23: 1.5585 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.1380 S13: -0.0793 REMARK 3 S21: -0.2294 S22: -0.1291 S23: 0.0035 REMARK 3 S31: -0.5058 S32: -0.8047 S33: 0.1841 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2985 11.6416 11.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.6507 T22: 0.5339 REMARK 3 T33: 0.4654 T12: -0.0787 REMARK 3 T13: 0.0000 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.3525 L22: 0.5478 REMARK 3 L33: 3.8411 L12: -0.0176 REMARK 3 L13: -0.5329 L23: 0.2381 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.1216 S13: -0.1642 REMARK 3 S21: -0.0240 S22: 0.0200 S23: 0.0735 REMARK 3 S31: -0.4435 S32: 0.3894 S33: 0.0279 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 328 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9052 4.7329 0.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.5024 T22: 0.4935 REMARK 3 T33: 0.4149 T12: -0.0228 REMARK 3 T13: 0.0812 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.2896 L22: 1.6054 REMARK 3 L33: 5.6217 L12: 0.4908 REMARK 3 L13: -0.0804 L23: -0.2952 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: 0.0139 S13: -0.1254 REMARK 3 S21: -0.4729 S22: -0.0377 S23: -0.3194 REMARK 3 S31: 0.2379 S32: 0.6573 S33: 0.1714 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3THB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2OWB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.12267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.56133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.56133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.56133 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 ILE A 40 REMARK 465 PRO A 41 REMARK 465 PRO A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 LEU A 332 REMARK 465 ASP A 333 REMARK 465 PRO A 334 REMARK 465 SER A 335 REMARK 465 ASN A 336 REMARK 465 ARG A 337 REMARK 465 LYS A 338 REMARK 465 PRO A 339 REMARK 465 LEU A 340 REMARK 465 THR A 341 REMARK 465 VAL A 342 REMARK 465 LEU A 343 REMARK 465 ASN A 344 REMARK 465 LYS A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 VAL A 43 CG1 CG2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 SER A 49 OG REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ILE A 83 CG1 CG2 CD1 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 -159.82 -120.81 REMARK 500 ARG A 136 -134.56 62.36 REMARK 500 LYS A 146 -133.68 45.06 REMARK 500 ARG A 175 -10.07 73.84 REMARK 500 ASP A 194 75.45 55.15 REMARK 500 SER A 229 -140.21 -142.32 REMARK 500 GLU A 231 -7.29 -58.44 REMARK 500 GLU A 303 -37.82 -31.58 REMARK 500 THR A 317 -42.66 -27.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 CYS A 212 SG 105.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3TA A 1 DBREF 3THB A 13 345 UNP P53350 PLK1_HUMAN 13 345 SEQADV 3THB VAL A 210 UNP P53350 THR 210 ENGINEERED MUTATION SEQRES 1 A 333 ALA PRO ALA ASP PRO GLY LYS ALA GLY VAL PRO GLY VAL SEQRES 2 A 333 ALA ALA PRO GLY ALA PRO ALA ALA ALA PRO PRO ALA LYS SEQRES 3 A 333 GLU ILE PRO GLU VAL LEU VAL ASP PRO ARG SER ARG ARG SEQRES 4 A 333 ARG TYR VAL ARG GLY ARG PHE LEU GLY LYS GLY GLY PHE SEQRES 5 A 333 ALA LYS CYS PHE GLU ILE SER ASP ALA ASP THR LYS GLU SEQRES 6 A 333 VAL PHE ALA GLY LYS ILE VAL PRO LYS SER LEU LEU LEU SEQRES 7 A 333 LYS PRO HIS GLN ARG GLU LYS MET SER MET GLU ILE SER SEQRES 8 A 333 ILE HIS ARG SER LEU ALA HIS GLN HIS VAL VAL GLY PHE SEQRES 9 A 333 HIS GLY PHE PHE GLU ASP ASN ASP PHE VAL PHE VAL VAL SEQRES 10 A 333 LEU GLU LEU CYS ARG ARG ARG SER LEU LEU GLU LEU HIS SEQRES 11 A 333 LYS ARG ARG LYS ALA LEU THR GLU PRO GLU ALA ARG TYR SEQRES 12 A 333 TYR LEU ARG GLN ILE VAL LEU GLY CYS GLN TYR LEU HIS SEQRES 13 A 333 ARG ASN ARG VAL ILE HIS ARG ASP LEU LYS LEU GLY ASN SEQRES 14 A 333 LEU PHE LEU ASN GLU ASP LEU GLU VAL LYS ILE GLY ASP SEQRES 15 A 333 PHE GLY LEU ALA THR LYS VAL GLU TYR ASP GLY GLU ARG SEQRES 16 A 333 LYS LYS VAL LEU CYS GLY THR PRO ASN TYR ILE ALA PRO SEQRES 17 A 333 GLU VAL LEU SER LYS LYS GLY HIS SER PHE GLU VAL ASP SEQRES 18 A 333 VAL TRP SER ILE GLY CYS ILE MET TYR THR LEU LEU VAL SEQRES 19 A 333 GLY LYS PRO PRO PHE GLU THR SER CYS LEU LYS GLU THR SEQRES 20 A 333 TYR LEU ARG ILE LYS LYS ASN GLU TYR SER ILE PRO LYS SEQRES 21 A 333 HIS ILE ASN PRO VAL ALA ALA SER LEU ILE GLN LYS MET SEQRES 22 A 333 LEU GLN THR ASP PRO THR ALA ARG PRO THR ILE ASN GLU SEQRES 23 A 333 LEU LEU ASN ASP GLU PHE PHE THR SER GLY TYR ILE PRO SEQRES 24 A 333 ALA ARG LEU PRO ILE THR CYS LEU THR ILE PRO PRO ARG SEQRES 25 A 333 PHE SER ILE ALA PRO SER SER LEU ASP PRO SER ASN ARG SEQRES 26 A 333 LYS PRO LEU THR VAL LEU ASN LYS HET ZN A 502 1 HET 3TA A 1 31 HETNAM ZN ZINC ION HETNAM 3TA 9-CHLORO-2-({5-[3-(DIMETHYLAMINO)PROPYL]-2- HETNAM 2 3TA METHYLPYRIDIN-3-YL}AMINO)-5,7-DIHYDRO-6H-PYRIMIDO[5,4- HETNAM 3 3TA D][1]BENZAZEPINE-6-THI ONE HETSYN 3TA MLN0905 FORMUL 2 ZN ZN 2+ FORMUL 3 3TA C23 H25 CL N6 S HELIX 1 1 SER A 87 LEU A 89 5 3 HELIX 2 2 LYS A 91 SER A 107 1 17 HELIX 3 3 SER A 137 LYS A 146 1 10 HELIX 4 4 THR A 149 ASN A 170 1 22 HELIX 5 5 LYS A 178 GLY A 180 5 3 HELIX 6 6 ALA A 219 SER A 224 1 6 HELIX 7 7 PHE A 230 GLY A 247 1 18 HELIX 8 8 CYS A 255 ASN A 266 1 12 HELIX 9 9 ASN A 275 LEU A 286 1 12 HELIX 10 10 GLU A 298 ASN A 301 5 4 HELIX 11 11 ASP A 302 SER A 307 1 6 HELIX 12 12 PRO A 315 THR A 320 5 6 SHEET 1 A 6 VAL A 43 VAL A 45 0 SHEET 2 A 6 ARG A 52 GLY A 62 -1 O TYR A 53 N LEU A 44 SHEET 3 A 6 ALA A 65 ASP A 72 -1 O CYS A 67 N GLY A 60 SHEET 4 A 6 VAL A 78 PRO A 85 -1 O PHE A 79 N ILE A 70 SHEET 5 A 6 PHE A 125 GLU A 131 -1 O LEU A 130 N ALA A 80 SHEET 6 A 6 PHE A 116 GLU A 121 -1 N GLY A 118 O VAL A 129 SHEET 1 B 2 VAL A 172 ILE A 173 0 SHEET 2 B 2 THR A 199 LYS A 200 -1 O THR A 199 N ILE A 173 SHEET 1 C 2 LEU A 182 LEU A 184 0 SHEET 2 C 2 VAL A 190 ILE A 192 -1 O LYS A 191 N PHE A 183 LINK NE2 HIS A 93 ZN ZN A 502 1555 1555 2.04 LINK SG CYS A 212 ZN ZN A 502 1555 1555 2.40 SITE 1 AC1 3 HIS A 93 CYS A 212 CYS A 255 SITE 1 AC2 12 LEU A 59 GLY A 60 LYS A 61 ALA A 80 SITE 2 AC2 12 GLU A 131 LEU A 132 CYS A 133 ARG A 136 SITE 3 AC2 12 GLU A 140 GLY A 180 PHE A 183 ASP A 194 CRYST1 67.668 67.668 154.684 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014778 0.008532 0.000000 0.00000 SCALE2 0.000000 0.017064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006465 0.00000