data_3TNF # _entry.id 3TNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TNF pdb_00003tnf 10.2210/pdb3tnf/pdb RCSB RCSB067686 ? ? WWPDB D_1000067686 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2011-11-23 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_ref_seq_dif.details' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3TNF _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-01 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3QBT _pdbx_database_related.details 'Active Rab8a in complex with OCRL1' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schoebel, S.' 1 'Cichy, A.L.' 2 'Goody, R.S.' 3 'Itzen, A.' 4 # _citation.id primary _citation.title 'Protein LidA from Legionella is a Rab GTPase supereffector.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 17945 _citation.page_last 17950 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22011575 _citation.pdbx_database_id_DOI 10.1073/pnas.1113133108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schoebel, S.' 1 ? primary 'Cichy, A.L.' 2 ? primary 'Goody, R.S.' 3 ? primary 'Itzen, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein Rab-8A' 20012.037 1 ? ? 'unp residues 6-176' ? 2 polymer man LidA 44637.355 1 ? ? 'unp residues 201-583' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 5 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 4 ? ? ? ? 6 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Oncogene c-mel' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GHMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF FTLARDIKAKMDKK ; ;GHMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF FTLARDIKAKMDKK ; A ? 2 'polypeptide(L)' no no ;GMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKL TQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQK GQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLA NLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEK QKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISKLQS ; ;GMLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKL TQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQK GQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLA NLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEK QKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISKLQS ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 5 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ASP n 1 5 TYR n 1 6 LEU n 1 7 PHE n 1 8 LYS n 1 9 LEU n 1 10 LEU n 1 11 LEU n 1 12 ILE n 1 13 GLY n 1 14 ASP n 1 15 SER n 1 16 GLY n 1 17 VAL n 1 18 GLY n 1 19 LYS n 1 20 THR n 1 21 CYS n 1 22 VAL n 1 23 LEU n 1 24 PHE n 1 25 ARG n 1 26 PHE n 1 27 SER n 1 28 GLU n 1 29 ASP n 1 30 ALA n 1 31 PHE n 1 32 ASN n 1 33 SER n 1 34 THR n 1 35 PHE n 1 36 ILE n 1 37 SER n 1 38 THR n 1 39 ILE n 1 40 GLY n 1 41 ILE n 1 42 ASP n 1 43 PHE n 1 44 LYS n 1 45 ILE n 1 46 ARG n 1 47 THR n 1 48 ILE n 1 49 GLU n 1 50 LEU n 1 51 ASP n 1 52 GLY n 1 53 LYS n 1 54 ARG n 1 55 ILE n 1 56 LYS n 1 57 LEU n 1 58 GLN n 1 59 ILE n 1 60 TRP n 1 61 ASP n 1 62 THR n 1 63 ALA n 1 64 GLY n 1 65 GLN n 1 66 GLU n 1 67 ARG n 1 68 PHE n 1 69 ARG n 1 70 THR n 1 71 ILE n 1 72 THR n 1 73 THR n 1 74 ALA n 1 75 TYR n 1 76 TYR n 1 77 ARG n 1 78 GLY n 1 79 ALA n 1 80 MET n 1 81 GLY n 1 82 ILE n 1 83 MET n 1 84 LEU n 1 85 VAL n 1 86 TYR n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ASN n 1 91 GLU n 1 92 LYS n 1 93 SER n 1 94 PHE n 1 95 ASP n 1 96 ASN n 1 97 ILE n 1 98 ARG n 1 99 ASN n 1 100 TRP n 1 101 ILE n 1 102 ARG n 1 103 ASN n 1 104 ILE n 1 105 GLU n 1 106 GLU n 1 107 HIS n 1 108 ALA n 1 109 SER n 1 110 ALA n 1 111 ASP n 1 112 VAL n 1 113 GLU n 1 114 LYS n 1 115 MET n 1 116 ILE n 1 117 LEU n 1 118 GLY n 1 119 ASN n 1 120 LYS n 1 121 CYS n 1 122 ASP n 1 123 VAL n 1 124 ASN n 1 125 ASP n 1 126 LYS n 1 127 ARG n 1 128 GLN n 1 129 VAL n 1 130 SER n 1 131 LYS n 1 132 GLU n 1 133 ARG n 1 134 GLY n 1 135 GLU n 1 136 LYS n 1 137 LEU n 1 138 ALA n 1 139 LEU n 1 140 ASP n 1 141 TYR n 1 142 GLY n 1 143 ILE n 1 144 LYS n 1 145 PHE n 1 146 MET n 1 147 GLU n 1 148 THR n 1 149 SER n 1 150 ALA n 1 151 LYS n 1 152 ALA n 1 153 ASN n 1 154 ILE n 1 155 ASN n 1 156 VAL n 1 157 GLU n 1 158 ASN n 1 159 ALA n 1 160 PHE n 1 161 PHE n 1 162 THR n 1 163 LEU n 1 164 ALA n 1 165 ARG n 1 166 ASP n 1 167 ILE n 1 168 LYS n 1 169 ALA n 1 170 LYS n 1 171 MET n 1 172 ASP n 1 173 LYS n 1 174 LYS n 2 1 GLY n 2 2 MET n 2 3 LEU n 2 4 ASP n 2 5 GLU n 2 6 TYR n 2 7 GLU n 2 8 GLN n 2 9 ALA n 2 10 ILE n 2 11 LYS n 2 12 ARG n 2 13 ALA n 2 14 GLN n 2 15 GLU n 2 16 ASN n 2 17 ILE n 2 18 LYS n 2 19 LYS n 2 20 GLY n 2 21 GLU n 2 22 GLU n 2 23 LEU n 2 24 GLU n 2 25 LYS n 2 26 LYS n 2 27 LEU n 2 28 ASP n 2 29 LYS n 2 30 LEU n 2 31 GLU n 2 32 ARG n 2 33 GLN n 2 34 GLY n 2 35 LYS n 2 36 ASP n 2 37 LEU n 2 38 GLU n 2 39 ASP n 2 40 LYS n 2 41 TYR n 2 42 LYS n 2 43 THR n 2 44 TYR n 2 45 GLU n 2 46 GLU n 2 47 ASN n 2 48 LEU n 2 49 GLU n 2 50 GLY n 2 51 PHE n 2 52 GLU n 2 53 LYS n 2 54 LEU n 2 55 LEU n 2 56 THR n 2 57 ASP n 2 58 SER n 2 59 GLU n 2 60 GLU n 2 61 LEU n 2 62 SER n 2 63 LEU n 2 64 SER n 2 65 GLU n 2 66 ILE n 2 67 ASN n 2 68 GLU n 2 69 LYS n 2 70 MET n 2 71 GLU n 2 72 ALA n 2 73 PHE n 2 74 SER n 2 75 LYS n 2 76 ASP n 2 77 SER n 2 78 GLU n 2 79 LYS n 2 80 LEU n 2 81 THR n 2 82 GLN n 2 83 LEU n 2 84 MET n 2 85 GLU n 2 86 LYS n 2 87 HIS n 2 88 LYS n 2 89 GLY n 2 90 ASP n 2 91 GLU n 2 92 LYS n 2 93 THR n 2 94 VAL n 2 95 GLN n 2 96 SER n 2 97 LEU n 2 98 GLN n 2 99 ARG n 2 100 GLU n 2 101 HIS n 2 102 HIS n 2 103 ASP n 2 104 ILE n 2 105 LYS n 2 106 ALA n 2 107 LYS n 2 108 LEU n 2 109 ALA n 2 110 ASN n 2 111 LEU n 2 112 GLN n 2 113 VAL n 2 114 LEU n 2 115 HIS n 2 116 ASP n 2 117 ALA n 2 118 HIS n 2 119 THR n 2 120 GLY n 2 121 LYS n 2 122 LYS n 2 123 SER n 2 124 TYR n 2 125 VAL n 2 126 ASN n 2 127 GLU n 2 128 LYS n 2 129 GLY n 2 130 ASN n 2 131 PRO n 2 132 VAL n 2 133 SER n 2 134 SER n 2 135 LEU n 2 136 LYS n 2 137 ASP n 2 138 ALA n 2 139 HIS n 2 140 LEU n 2 141 ALA n 2 142 ILE n 2 143 ASN n 2 144 LYS n 2 145 ASP n 2 146 GLN n 2 147 GLU n 2 148 VAL n 2 149 VAL n 2 150 GLU n 2 151 HIS n 2 152 GLU n 2 153 GLY n 2 154 GLN n 2 155 PHE n 2 156 TYR n 2 157 LEU n 2 158 LEU n 2 159 GLN n 2 160 LYS n 2 161 GLY n 2 162 GLN n 2 163 TRP n 2 164 ASP n 2 165 ALA n 2 166 ILE n 2 167 LYS n 2 168 ASN n 2 169 ASN n 2 170 PRO n 2 171 ALA n 2 172 ALA n 2 173 LEU n 2 174 GLU n 2 175 LYS n 2 176 ALA n 2 177 GLN n 2 178 LYS n 2 179 ASP n 2 180 TYR n 2 181 SER n 2 182 GLN n 2 183 SER n 2 184 LYS n 2 185 HIS n 2 186 ASP n 2 187 LEU n 2 188 ALA n 2 189 THR n 2 190 ILE n 2 191 LYS n 2 192 MET n 2 193 GLU n 2 194 ALA n 2 195 LEU n 2 196 ILE n 2 197 HIS n 2 198 LYS n 2 199 LEU n 2 200 SER n 2 201 LEU n 2 202 GLU n 2 203 MET n 2 204 GLU n 2 205 LYS n 2 206 GLN n 2 207 LEU n 2 208 GLU n 2 209 THR n 2 210 ILE n 2 211 ASN n 2 212 ASN n 2 213 LEU n 2 214 ILE n 2 215 MET n 2 216 SER n 2 217 THR n 2 218 ASP n 2 219 PRO n 2 220 LYS n 2 221 GLU n 2 222 ASN n 2 223 GLU n 2 224 GLU n 2 225 ALA n 2 226 THR n 2 227 LYS n 2 228 LEU n 2 229 LEU n 2 230 HIS n 2 231 LYS n 2 232 HIS n 2 233 ASN n 2 234 GLY n 2 235 LEU n 2 236 ASN n 2 237 LEU n 2 238 LYS n 2 239 LEU n 2 240 ALA n 2 241 ASN n 2 242 LEU n 2 243 GLN n 2 244 ASP n 2 245 MET n 2 246 LEU n 2 247 ALA n 2 248 VAL n 2 249 HIS n 2 250 ARG n 2 251 LYS n 2 252 GLU n 2 253 LYS n 2 254 SER n 2 255 PHE n 2 256 PHE n 2 257 ASN n 2 258 GLU n 2 259 LYS n 2 260 GLY n 2 261 GLU n 2 262 GLU n 2 263 VAL n 2 264 THR n 2 265 SER n 2 266 LEU n 2 267 ASN n 2 268 ASP n 2 269 ALA n 2 270 HIS n 2 271 TYR n 2 272 VAL n 2 273 ILE n 2 274 GLY n 2 275 LYS n 2 276 ASP n 2 277 GLN n 2 278 GLN n 2 279 LEU n 2 280 PHE n 2 281 ASN n 2 282 LEU n 2 283 GLY n 2 284 GLY n 2 285 LYS n 2 286 PHE n 2 287 TYR n 2 288 PRO n 2 289 ILE n 2 290 HIS n 2 291 LYS n 2 292 GLU n 2 293 GLN n 2 294 LYS n 2 295 ILE n 2 296 LEU n 2 297 GLU n 2 298 LYS n 2 299 ASP n 2 300 GLY n 2 301 LYS n 2 302 PHE n 2 303 TYR n 2 304 LEU n 2 305 LEU n 2 306 LYS n 2 307 GLN n 2 308 GLY n 2 309 GLU n 2 310 ASP n 2 311 TRP n 2 312 GLU n 2 313 SER n 2 314 ILE n 2 315 LYS n 2 316 ASP n 2 317 SER n 2 318 PRO n 2 319 GLU n 2 320 LYS n 2 321 GLN n 2 322 LYS n 2 323 LYS n 2 324 ALA n 2 325 GLU n 2 326 HIS n 2 327 ASP n 2 328 PHE n 2 329 HIS n 2 330 LYS n 2 331 LEU n 2 332 GLN n 2 333 TYR n 2 334 GLU n 2 335 THR n 2 336 PRO n 2 337 MET n 2 338 THR n 2 339 VAL n 2 340 LYS n 2 341 LYS n 2 342 LEU n 2 343 VAL n 2 344 HIS n 2 345 HIS n 2 346 ASN n 2 347 LYS n 2 348 GLY n 2 349 LEU n 2 350 GLU n 2 351 THR n 2 352 THR n 2 353 ILE n 2 354 HIS n 2 355 LYS n 2 356 GLU n 2 357 ARG n 2 358 VAL n 2 359 GLU n 2 360 GLU n 2 361 THR n 2 362 LYS n 2 363 GLN n 2 364 GLN n 2 365 LEU n 2 366 GLU n 2 367 ASP n 2 368 ASN n 2 369 GLY n 2 370 LYS n 2 371 GLU n 2 372 LYS n 2 373 ILE n 2 374 GLU n 2 375 ILE n 2 376 ALA n 2 377 ASN n 2 378 ASN n 2 379 ILE n 2 380 SER n 2 381 LYS n 2 382 LEU n 2 383 GLN n 2 384 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'MEL, RAB8, RAB8A' ? 'synthetic DNA' ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET19mod ? ? 2 1 sample ? ? ? ? ? 'lida, lpg0940' ? 'Legionella pneumophila subsp. pneumophila str. philadelphia 1' ? ? ? ? 'Legionella pneumophila subsp. pneumophila str. Philadelphia 1' 272624 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)RIL' ? ? ? ? ? ? ? plasmid ? ? ? pOPINF ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 3 ? ? ? A . n A 1 2 HIS 2 4 ? ? ? A . n A 1 3 MET 3 5 ? ? ? A . n A 1 4 ASP 4 6 6 ASP ASP A . n A 1 5 TYR 5 7 7 TYR TYR A . n A 1 6 LEU 6 8 8 LEU LEU A . n A 1 7 PHE 7 9 9 PHE PHE A . n A 1 8 LYS 8 10 10 LYS LYS A . n A 1 9 LEU 9 11 11 LEU LEU A . n A 1 10 LEU 10 12 12 LEU LEU A . n A 1 11 LEU 11 13 13 LEU LEU A . n A 1 12 ILE 12 14 14 ILE ILE A . n A 1 13 GLY 13 15 15 GLY GLY A . n A 1 14 ASP 14 16 16 ASP ASP A . n A 1 15 SER 15 17 17 SER SER A . n A 1 16 GLY 16 18 18 GLY GLY A . n A 1 17 VAL 17 19 19 VAL VAL A . n A 1 18 GLY 18 20 20 GLY GLY A . n A 1 19 LYS 19 21 21 LYS LYS A . n A 1 20 THR 20 22 22 THR THR A . n A 1 21 CYS 21 23 23 CYS CYS A . n A 1 22 VAL 22 24 24 VAL VAL A . n A 1 23 LEU 23 25 25 LEU LEU A . n A 1 24 PHE 24 26 26 PHE PHE A . n A 1 25 ARG 25 27 27 ARG ARG A . n A 1 26 PHE 26 28 28 PHE PHE A . n A 1 27 SER 27 29 29 SER SER A . n A 1 28 GLU 28 30 30 GLU GLU A . n A 1 29 ASP 29 31 31 ASP ASP A . n A 1 30 ALA 30 32 32 ALA ALA A . n A 1 31 PHE 31 33 33 PHE PHE A . n A 1 32 ASN 32 34 34 ASN ASN A . n A 1 33 SER 33 35 35 SER SER A . n A 1 34 THR 34 36 36 THR THR A . n A 1 35 PHE 35 37 37 PHE PHE A . n A 1 36 ILE 36 38 38 ILE ILE A . n A 1 37 SER 37 39 39 SER SER A . n A 1 38 THR 38 40 40 THR THR A . n A 1 39 ILE 39 41 41 ILE ILE A . n A 1 40 GLY 40 42 42 GLY GLY A . n A 1 41 ILE 41 43 43 ILE ILE A . n A 1 42 ASP 42 44 44 ASP ASP A . n A 1 43 PHE 43 45 45 PHE PHE A . n A 1 44 LYS 44 46 46 LYS LYS A . n A 1 45 ILE 45 47 47 ILE ILE A . n A 1 46 ARG 46 48 48 ARG ARG A . n A 1 47 THR 47 49 49 THR THR A . n A 1 48 ILE 48 50 50 ILE ILE A . n A 1 49 GLU 49 51 51 GLU GLU A . n A 1 50 LEU 50 52 52 LEU LEU A . n A 1 51 ASP 51 53 53 ASP ASP A . n A 1 52 GLY 52 54 54 GLY GLY A . n A 1 53 LYS 53 55 55 LYS LYS A . n A 1 54 ARG 54 56 56 ARG ARG A . n A 1 55 ILE 55 57 57 ILE ILE A . n A 1 56 LYS 56 58 58 LYS LYS A . n A 1 57 LEU 57 59 59 LEU LEU A . n A 1 58 GLN 58 60 60 GLN GLN A . n A 1 59 ILE 59 61 61 ILE ILE A . n A 1 60 TRP 60 62 62 TRP TRP A . n A 1 61 ASP 61 63 63 ASP ASP A . n A 1 62 THR 62 64 64 THR THR A . n A 1 63 ALA 63 65 65 ALA ALA A . n A 1 64 GLY 64 66 66 GLY GLY A . n A 1 65 GLN 65 67 67 GLN GLN A . n A 1 66 GLU 66 68 68 GLU GLU A . n A 1 67 ARG 67 69 69 ARG ARG A . n A 1 68 PHE 68 70 70 PHE PHE A . n A 1 69 ARG 69 71 71 ARG ARG A . n A 1 70 THR 70 72 72 THR THR A . n A 1 71 ILE 71 73 73 ILE ILE A . n A 1 72 THR 72 74 74 THR THR A . n A 1 73 THR 73 75 75 THR THR A . n A 1 74 ALA 74 76 76 ALA ALA A . n A 1 75 TYR 75 77 77 TYR TYR A . n A 1 76 TYR 76 78 78 TYR TYR A . n A 1 77 ARG 77 79 79 ARG ARG A . n A 1 78 GLY 78 80 80 GLY GLY A . n A 1 79 ALA 79 81 81 ALA ALA A . n A 1 80 MET 80 82 82 MET MET A . n A 1 81 GLY 81 83 83 GLY GLY A . n A 1 82 ILE 82 84 84 ILE ILE A . n A 1 83 MET 83 85 85 MET MET A . n A 1 84 LEU 84 86 86 LEU LEU A . n A 1 85 VAL 85 87 87 VAL VAL A . n A 1 86 TYR 86 88 88 TYR TYR A . n A 1 87 ASP 87 89 89 ASP ASP A . n A 1 88 ILE 88 90 90 ILE ILE A . n A 1 89 THR 89 91 91 THR THR A . n A 1 90 ASN 90 92 92 ASN ASN A . n A 1 91 GLU 91 93 93 GLU GLU A . n A 1 92 LYS 92 94 94 LYS LYS A . n A 1 93 SER 93 95 95 SER SER A . n A 1 94 PHE 94 96 96 PHE PHE A . n A 1 95 ASP 95 97 97 ASP ASP A . n A 1 96 ASN 96 98 98 ASN ASN A . n A 1 97 ILE 97 99 99 ILE ILE A . n A 1 98 ARG 98 100 100 ARG ARG A . n A 1 99 ASN 99 101 101 ASN ASN A . n A 1 100 TRP 100 102 102 TRP TRP A . n A 1 101 ILE 101 103 103 ILE ILE A . n A 1 102 ARG 102 104 104 ARG ARG A . n A 1 103 ASN 103 105 105 ASN ASN A . n A 1 104 ILE 104 106 106 ILE ILE A . n A 1 105 GLU 105 107 107 GLU GLU A . n A 1 106 GLU 106 108 108 GLU GLU A . n A 1 107 HIS 107 109 109 HIS HIS A . n A 1 108 ALA 108 110 110 ALA ALA A . n A 1 109 SER 109 111 111 SER SER A . n A 1 110 ALA 110 112 112 ALA ALA A . n A 1 111 ASP 111 113 113 ASP ASP A . n A 1 112 VAL 112 114 114 VAL VAL A . n A 1 113 GLU 113 115 115 GLU GLU A . n A 1 114 LYS 114 116 116 LYS LYS A . n A 1 115 MET 115 117 117 MET MET A . n A 1 116 ILE 116 118 118 ILE ILE A . n A 1 117 LEU 117 119 119 LEU LEU A . n A 1 118 GLY 118 120 120 GLY GLY A . n A 1 119 ASN 119 121 121 ASN ASN A . n A 1 120 LYS 120 122 122 LYS LYS A . n A 1 121 CYS 121 123 123 CYS CYS A . n A 1 122 ASP 122 124 124 ASP ASP A . n A 1 123 VAL 123 125 125 VAL VAL A . n A 1 124 ASN 124 126 126 ASN ASN A . n A 1 125 ASP 125 127 127 ASP ASP A . n A 1 126 LYS 126 128 128 LYS LYS A . n A 1 127 ARG 127 129 129 ARG ARG A . n A 1 128 GLN 128 130 130 GLN GLN A . n A 1 129 VAL 129 131 131 VAL VAL A . n A 1 130 SER 130 132 132 SER SER A . n A 1 131 LYS 131 133 133 LYS LYS A . n A 1 132 GLU 132 134 134 GLU GLU A . n A 1 133 ARG 133 135 135 ARG ARG A . n A 1 134 GLY 134 136 136 GLY GLY A . n A 1 135 GLU 135 137 137 GLU GLU A . n A 1 136 LYS 136 138 138 LYS LYS A . n A 1 137 LEU 137 139 139 LEU LEU A . n A 1 138 ALA 138 140 140 ALA ALA A . n A 1 139 LEU 139 141 141 LEU LEU A . n A 1 140 ASP 140 142 142 ASP ASP A . n A 1 141 TYR 141 143 143 TYR TYR A . n A 1 142 GLY 142 144 144 GLY GLY A . n A 1 143 ILE 143 145 145 ILE ILE A . n A 1 144 LYS 144 146 146 LYS LYS A . n A 1 145 PHE 145 147 147 PHE PHE A . n A 1 146 MET 146 148 148 MET MET A . n A 1 147 GLU 147 149 149 GLU GLU A . n A 1 148 THR 148 150 150 THR THR A . n A 1 149 SER 149 151 151 SER SER A . n A 1 150 ALA 150 152 152 ALA ALA A . n A 1 151 LYS 151 153 153 LYS LYS A . n A 1 152 ALA 152 154 154 ALA ALA A . n A 1 153 ASN 153 155 155 ASN ASN A . n A 1 154 ILE 154 156 156 ILE ILE A . n A 1 155 ASN 155 157 157 ASN ASN A . n A 1 156 VAL 156 158 158 VAL VAL A . n A 1 157 GLU 157 159 159 GLU GLU A . n A 1 158 ASN 158 160 160 ASN ASN A . n A 1 159 ALA 159 161 161 ALA ALA A . n A 1 160 PHE 160 162 162 PHE PHE A . n A 1 161 PHE 161 163 163 PHE PHE A . n A 1 162 THR 162 164 164 THR THR A . n A 1 163 LEU 163 165 165 LEU LEU A . n A 1 164 ALA 164 166 166 ALA ALA A . n A 1 165 ARG 165 167 167 ARG ARG A . n A 1 166 ASP 166 168 168 ASP ASP A . n A 1 167 ILE 167 169 169 ILE ILE A . n A 1 168 LYS 168 170 170 LYS LYS A . n A 1 169 ALA 169 171 171 ALA ALA A . n A 1 170 LYS 170 172 172 LYS LYS A . n A 1 171 MET 171 173 173 MET MET A . n A 1 172 ASP 172 174 174 ASP ASP A . n A 1 173 LYS 173 175 175 LYS LYS A . n A 1 174 LYS 174 176 ? ? ? A . n B 2 1 GLY 1 200 ? ? ? B . n B 2 2 MET 2 201 ? ? ? B . n B 2 3 LEU 3 202 202 LEU LEU B . n B 2 4 ASP 4 203 203 ASP ASP B . n B 2 5 GLU 5 204 204 GLU GLU B . n B 2 6 TYR 6 205 205 TYR TYR B . n B 2 7 GLU 7 206 206 GLU GLU B . n B 2 8 GLN 8 207 207 GLN GLN B . n B 2 9 ALA 9 208 208 ALA ALA B . n B 2 10 ILE 10 209 209 ILE ILE B . n B 2 11 LYS 11 210 210 LYS LYS B . n B 2 12 ARG 12 211 211 ARG ARG B . n B 2 13 ALA 13 212 212 ALA ALA B . n B 2 14 GLN 14 213 213 GLN GLN B . n B 2 15 GLU 15 214 214 GLU GLU B . n B 2 16 ASN 16 215 215 ASN ASN B . n B 2 17 ILE 17 216 216 ILE ILE B . n B 2 18 LYS 18 217 217 LYS LYS B . n B 2 19 LYS 19 218 218 LYS LYS B . n B 2 20 GLY 20 219 219 GLY GLY B . n B 2 21 GLU 21 220 220 GLU GLU B . n B 2 22 GLU 22 221 221 GLU GLU B . n B 2 23 LEU 23 222 222 LEU LEU B . n B 2 24 GLU 24 223 223 GLU GLU B . n B 2 25 LYS 25 224 224 LYS LYS B . n B 2 26 LYS 26 225 225 LYS LYS B . n B 2 27 LEU 27 226 226 LEU LEU B . n B 2 28 ASP 28 227 227 ASP ASP B . n B 2 29 LYS 29 228 228 LYS LYS B . n B 2 30 LEU 30 229 229 LEU LEU B . n B 2 31 GLU 31 230 230 GLU GLU B . n B 2 32 ARG 32 231 231 ARG ARG B . n B 2 33 GLN 33 232 232 GLN GLN B . n B 2 34 GLY 34 233 233 GLY GLY B . n B 2 35 LYS 35 234 234 LYS LYS B . n B 2 36 ASP 36 235 235 ASP ASP B . n B 2 37 LEU 37 236 236 LEU LEU B . n B 2 38 GLU 38 237 237 GLU GLU B . n B 2 39 ASP 39 238 238 ASP ASP B . n B 2 40 LYS 40 239 239 LYS LYS B . n B 2 41 TYR 41 240 240 TYR TYR B . n B 2 42 LYS 42 241 241 LYS LYS B . n B 2 43 THR 43 242 242 THR THR B . n B 2 44 TYR 44 243 243 TYR TYR B . n B 2 45 GLU 45 244 244 GLU GLU B . n B 2 46 GLU 46 245 245 GLU GLU B . n B 2 47 ASN 47 246 246 ASN ASN B . n B 2 48 LEU 48 247 247 LEU LEU B . n B 2 49 GLU 49 248 248 GLU GLU B . n B 2 50 GLY 50 249 249 GLY GLY B . n B 2 51 PHE 51 250 250 PHE PHE B . n B 2 52 GLU 52 251 251 GLU GLU B . n B 2 53 LYS 53 252 252 LYS LYS B . n B 2 54 LEU 54 253 253 LEU LEU B . n B 2 55 LEU 55 254 254 LEU LEU B . n B 2 56 THR 56 255 255 THR THR B . n B 2 57 ASP 57 256 256 ASP ASP B . n B 2 58 SER 58 257 257 SER SER B . n B 2 59 GLU 59 258 258 GLU GLU B . n B 2 60 GLU 60 259 259 GLU GLU B . n B 2 61 LEU 61 260 260 LEU LEU B . n B 2 62 SER 62 261 261 SER SER B . n B 2 63 LEU 63 262 262 LEU LEU B . n B 2 64 SER 64 263 263 SER SER B . n B 2 65 GLU 65 264 264 GLU GLU B . n B 2 66 ILE 66 265 265 ILE ILE B . n B 2 67 ASN 67 266 266 ASN ASN B . n B 2 68 GLU 68 267 267 GLU GLU B . n B 2 69 LYS 69 268 268 LYS LYS B . n B 2 70 MET 70 269 269 MET MET B . n B 2 71 GLU 71 270 270 GLU GLU B . n B 2 72 ALA 72 271 271 ALA ALA B . n B 2 73 PHE 73 272 272 PHE PHE B . n B 2 74 SER 74 273 273 SER SER B . n B 2 75 LYS 75 274 274 LYS LYS B . n B 2 76 ASP 76 275 275 ASP ASP B . n B 2 77 SER 77 276 276 SER SER B . n B 2 78 GLU 78 277 277 GLU GLU B . n B 2 79 LYS 79 278 278 LYS LYS B . n B 2 80 LEU 80 279 279 LEU LEU B . n B 2 81 THR 81 280 280 THR THR B . n B 2 82 GLN 82 281 281 GLN GLN B . n B 2 83 LEU 83 282 282 LEU LEU B . n B 2 84 MET 84 283 283 MET MET B . n B 2 85 GLU 85 284 284 GLU GLU B . n B 2 86 LYS 86 285 285 LYS LYS B . n B 2 87 HIS 87 286 286 HIS HIS B . n B 2 88 LYS 88 287 287 LYS LYS B . n B 2 89 GLY 89 288 288 GLY GLY B . n B 2 90 ASP 90 289 289 ASP ASP B . n B 2 91 GLU 91 290 290 GLU GLU B . n B 2 92 LYS 92 291 291 LYS LYS B . n B 2 93 THR 93 292 292 THR THR B . n B 2 94 VAL 94 293 293 VAL VAL B . n B 2 95 GLN 95 294 294 GLN GLN B . n B 2 96 SER 96 295 295 SER SER B . n B 2 97 LEU 97 296 296 LEU LEU B . n B 2 98 GLN 98 297 297 GLN GLN B . n B 2 99 ARG 99 298 298 ARG ARG B . n B 2 100 GLU 100 299 299 GLU GLU B . n B 2 101 HIS 101 300 300 HIS HIS B . n B 2 102 HIS 102 301 301 HIS HIS B . n B 2 103 ASP 103 302 302 ASP ASP B . n B 2 104 ILE 104 303 303 ILE ILE B . n B 2 105 LYS 105 304 304 LYS LYS B . n B 2 106 ALA 106 305 305 ALA ALA B . n B 2 107 LYS 107 306 306 LYS LYS B . n B 2 108 LEU 108 307 307 LEU LEU B . n B 2 109 ALA 109 308 308 ALA ALA B . n B 2 110 ASN 110 309 309 ASN ASN B . n B 2 111 LEU 111 310 310 LEU LEU B . n B 2 112 GLN 112 311 311 GLN GLN B . n B 2 113 VAL 113 312 312 VAL VAL B . n B 2 114 LEU 114 313 313 LEU LEU B . n B 2 115 HIS 115 314 314 HIS HIS B . n B 2 116 ASP 116 315 315 ASP ASP B . n B 2 117 ALA 117 316 316 ALA ALA B . n B 2 118 HIS 118 317 317 HIS HIS B . n B 2 119 THR 119 318 318 THR THR B . n B 2 120 GLY 120 319 319 GLY GLY B . n B 2 121 LYS 121 320 320 LYS LYS B . n B 2 122 LYS 122 321 321 LYS LYS B . n B 2 123 SER 123 322 322 SER SER B . n B 2 124 TYR 124 323 323 TYR TYR B . n B 2 125 VAL 125 324 324 VAL VAL B . n B 2 126 ASN 126 325 325 ASN ASN B . n B 2 127 GLU 127 326 326 GLU GLU B . n B 2 128 LYS 128 327 327 LYS LYS B . n B 2 129 GLY 129 328 328 GLY GLY B . n B 2 130 ASN 130 329 329 ASN ASN B . n B 2 131 PRO 131 330 330 PRO PRO B . n B 2 132 VAL 132 331 331 VAL VAL B . n B 2 133 SER 133 332 332 SER SER B . n B 2 134 SER 134 333 333 SER SER B . n B 2 135 LEU 135 334 334 LEU LEU B . n B 2 136 LYS 136 335 335 LYS LYS B . n B 2 137 ASP 137 336 336 ASP ASP B . n B 2 138 ALA 138 337 337 ALA ALA B . n B 2 139 HIS 139 338 338 HIS HIS B . n B 2 140 LEU 140 339 339 LEU LEU B . n B 2 141 ALA 141 340 340 ALA ALA B . n B 2 142 ILE 142 341 341 ILE ILE B . n B 2 143 ASN 143 342 342 ASN ASN B . n B 2 144 LYS 144 343 343 LYS LYS B . n B 2 145 ASP 145 344 344 ASP ASP B . n B 2 146 GLN 146 345 345 GLN GLN B . n B 2 147 GLU 147 346 346 GLU GLU B . n B 2 148 VAL 148 347 347 VAL VAL B . n B 2 149 VAL 149 348 348 VAL VAL B . n B 2 150 GLU 150 349 349 GLU GLU B . n B 2 151 HIS 151 350 350 HIS HIS B . n B 2 152 GLU 152 351 351 GLU GLU B . n B 2 153 GLY 153 352 352 GLY GLY B . n B 2 154 GLN 154 353 353 GLN GLN B . n B 2 155 PHE 155 354 354 PHE PHE B . n B 2 156 TYR 156 355 355 TYR TYR B . n B 2 157 LEU 157 356 356 LEU LEU B . n B 2 158 LEU 158 357 357 LEU LEU B . n B 2 159 GLN 159 358 358 GLN GLN B . n B 2 160 LYS 160 359 359 LYS LYS B . n B 2 161 GLY 161 360 360 GLY GLY B . n B 2 162 GLN 162 361 361 GLN GLN B . n B 2 163 TRP 163 362 362 TRP TRP B . n B 2 164 ASP 164 363 363 ASP ASP B . n B 2 165 ALA 165 364 364 ALA ALA B . n B 2 166 ILE 166 365 365 ILE ILE B . n B 2 167 LYS 167 366 366 LYS LYS B . n B 2 168 ASN 168 367 367 ASN ASN B . n B 2 169 ASN 169 368 368 ASN ASN B . n B 2 170 PRO 170 369 369 PRO PRO B . n B 2 171 ALA 171 370 370 ALA ALA B . n B 2 172 ALA 172 371 371 ALA ALA B . n B 2 173 LEU 173 372 372 LEU LEU B . n B 2 174 GLU 174 373 373 GLU GLU B . n B 2 175 LYS 175 374 374 LYS LYS B . n B 2 176 ALA 176 375 375 ALA ALA B . n B 2 177 GLN 177 376 376 GLN GLN B . n B 2 178 LYS 178 377 377 LYS LYS B . n B 2 179 ASP 179 378 378 ASP ASP B . n B 2 180 TYR 180 379 379 TYR TYR B . n B 2 181 SER 181 380 380 SER SER B . n B 2 182 GLN 182 381 381 GLN GLN B . n B 2 183 SER 183 382 382 SER SER B . n B 2 184 LYS 184 383 383 LYS LYS B . n B 2 185 HIS 185 384 384 HIS HIS B . n B 2 186 ASP 186 385 385 ASP ASP B . n B 2 187 LEU 187 386 386 LEU LEU B . n B 2 188 ALA 188 387 387 ALA ALA B . n B 2 189 THR 189 388 388 THR THR B . n B 2 190 ILE 190 389 389 ILE ILE B . n B 2 191 LYS 191 390 390 LYS LYS B . n B 2 192 MET 192 391 391 MET MET B . n B 2 193 GLU 193 392 392 GLU GLU B . n B 2 194 ALA 194 393 393 ALA ALA B . n B 2 195 LEU 195 394 394 LEU LEU B . n B 2 196 ILE 196 395 395 ILE ILE B . n B 2 197 HIS 197 396 396 HIS HIS B . n B 2 198 LYS 198 397 397 LYS LYS B . n B 2 199 LEU 199 398 398 LEU LEU B . n B 2 200 SER 200 399 399 SER SER B . n B 2 201 LEU 201 400 400 LEU LEU B . n B 2 202 GLU 202 401 401 GLU GLU B . n B 2 203 MET 203 402 402 MET MET B . n B 2 204 GLU 204 403 403 GLU GLU B . n B 2 205 LYS 205 404 404 LYS LYS B . n B 2 206 GLN 206 405 405 GLN GLN B . n B 2 207 LEU 207 406 406 LEU LEU B . n B 2 208 GLU 208 407 407 GLU GLU B . n B 2 209 THR 209 408 408 THR THR B . n B 2 210 ILE 210 409 409 ILE ILE B . n B 2 211 ASN 211 410 410 ASN ASN B . n B 2 212 ASN 212 411 411 ASN ASN B . n B 2 213 LEU 213 412 412 LEU LEU B . n B 2 214 ILE 214 413 413 ILE ILE B . n B 2 215 MET 215 414 414 MET MET B . n B 2 216 SER 216 415 415 SER SER B . n B 2 217 THR 217 416 416 THR THR B . n B 2 218 ASP 218 417 417 ASP ASP B . n B 2 219 PRO 219 418 418 PRO PRO B . n B 2 220 LYS 220 419 419 LYS LYS B . n B 2 221 GLU 221 420 420 GLU GLU B . n B 2 222 ASN 222 421 421 ASN ASN B . n B 2 223 GLU 223 422 422 GLU GLU B . n B 2 224 GLU 224 423 423 GLU GLU B . n B 2 225 ALA 225 424 424 ALA ALA B . n B 2 226 THR 226 425 425 THR THR B . n B 2 227 LYS 227 426 426 LYS LYS B . n B 2 228 LEU 228 427 427 LEU LEU B . n B 2 229 LEU 229 428 428 LEU LEU B . n B 2 230 HIS 230 429 429 HIS HIS B . n B 2 231 LYS 231 430 430 LYS LYS B . n B 2 232 HIS 232 431 431 HIS HIS B . n B 2 233 ASN 233 432 432 ASN ASN B . n B 2 234 GLY 234 433 433 GLY GLY B . n B 2 235 LEU 235 434 434 LEU LEU B . n B 2 236 ASN 236 435 435 ASN ASN B . n B 2 237 LEU 237 436 436 LEU LEU B . n B 2 238 LYS 238 437 437 LYS LYS B . n B 2 239 LEU 239 438 438 LEU LEU B . n B 2 240 ALA 240 439 439 ALA ALA B . n B 2 241 ASN 241 440 440 ASN ASN B . n B 2 242 LEU 242 441 441 LEU LEU B . n B 2 243 GLN 243 442 442 GLN GLN B . n B 2 244 ASP 244 443 443 ASP ASP B . n B 2 245 MET 245 444 444 MET MET B . n B 2 246 LEU 246 445 445 LEU LEU B . n B 2 247 ALA 247 446 446 ALA ALA B . n B 2 248 VAL 248 447 447 VAL VAL B . n B 2 249 HIS 249 448 448 HIS HIS B . n B 2 250 ARG 250 449 449 ARG ARG B . n B 2 251 LYS 251 450 450 LYS LYS B . n B 2 252 GLU 252 451 451 GLU GLU B . n B 2 253 LYS 253 452 452 LYS LYS B . n B 2 254 SER 254 453 453 SER SER B . n B 2 255 PHE 255 454 454 PHE PHE B . n B 2 256 PHE 256 455 455 PHE PHE B . n B 2 257 ASN 257 456 456 ASN ASN B . n B 2 258 GLU 258 457 457 GLU GLU B . n B 2 259 LYS 259 458 458 LYS LYS B . n B 2 260 GLY 260 459 459 GLY GLY B . n B 2 261 GLU 261 460 460 GLU GLU B . n B 2 262 GLU 262 461 461 GLU GLU B . n B 2 263 VAL 263 462 462 VAL VAL B . n B 2 264 THR 264 463 463 THR THR B . n B 2 265 SER 265 464 464 SER SER B . n B 2 266 LEU 266 465 465 LEU LEU B . n B 2 267 ASN 267 466 466 ASN ASN B . n B 2 268 ASP 268 467 467 ASP ASP B . n B 2 269 ALA 269 468 468 ALA ALA B . n B 2 270 HIS 270 469 469 HIS HIS B . n B 2 271 TYR 271 470 470 TYR TYR B . n B 2 272 VAL 272 471 471 VAL VAL B . n B 2 273 ILE 273 472 472 ILE ILE B . n B 2 274 GLY 274 473 473 GLY GLY B . n B 2 275 LYS 275 474 474 LYS LYS B . n B 2 276 ASP 276 475 475 ASP ASP B . n B 2 277 GLN 277 476 476 GLN GLN B . n B 2 278 GLN 278 477 477 GLN GLN B . n B 2 279 LEU 279 478 478 LEU LEU B . n B 2 280 PHE 280 479 479 PHE PHE B . n B 2 281 ASN 281 480 480 ASN ASN B . n B 2 282 LEU 282 481 481 LEU LEU B . n B 2 283 GLY 283 482 482 GLY GLY B . n B 2 284 GLY 284 483 483 GLY GLY B . n B 2 285 LYS 285 484 484 LYS LYS B . n B 2 286 PHE 286 485 485 PHE PHE B . n B 2 287 TYR 287 486 486 TYR TYR B . n B 2 288 PRO 288 487 487 PRO PRO B . n B 2 289 ILE 289 488 488 ILE ILE B . n B 2 290 HIS 290 489 489 HIS HIS B . n B 2 291 LYS 291 490 490 LYS LYS B . n B 2 292 GLU 292 491 491 GLU GLU B . n B 2 293 GLN 293 492 492 GLN GLN B . n B 2 294 LYS 294 493 493 LYS LYS B . n B 2 295 ILE 295 494 494 ILE ILE B . n B 2 296 LEU 296 495 495 LEU LEU B . n B 2 297 GLU 297 496 496 GLU GLU B . n B 2 298 LYS 298 497 497 LYS LYS B . n B 2 299 ASP 299 498 498 ASP ASP B . n B 2 300 GLY 300 499 499 GLY GLY B . n B 2 301 LYS 301 500 500 LYS LYS B . n B 2 302 PHE 302 501 501 PHE PHE B . n B 2 303 TYR 303 502 502 TYR TYR B . n B 2 304 LEU 304 503 503 LEU LEU B . n B 2 305 LEU 305 504 504 LEU LEU B . n B 2 306 LYS 306 505 505 LYS LYS B . n B 2 307 GLN 307 506 506 GLN GLN B . n B 2 308 GLY 308 507 507 GLY GLY B . n B 2 309 GLU 309 508 508 GLU GLU B . n B 2 310 ASP 310 509 509 ASP ASP B . n B 2 311 TRP 311 510 510 TRP TRP B . n B 2 312 GLU 312 511 511 GLU GLU B . n B 2 313 SER 313 512 512 SER SER B . n B 2 314 ILE 314 513 513 ILE ILE B . n B 2 315 LYS 315 514 514 LYS LYS B . n B 2 316 ASP 316 515 515 ASP ASP B . n B 2 317 SER 317 516 516 SER SER B . n B 2 318 PRO 318 517 517 PRO PRO B . n B 2 319 GLU 319 518 518 GLU GLU B . n B 2 320 LYS 320 519 519 LYS LYS B . n B 2 321 GLN 321 520 520 GLN GLN B . n B 2 322 LYS 322 521 521 LYS LYS B . n B 2 323 LYS 323 522 522 LYS LYS B . n B 2 324 ALA 324 523 523 ALA ALA B . n B 2 325 GLU 325 524 524 GLU GLU B . n B 2 326 HIS 326 525 525 HIS HIS B . n B 2 327 ASP 327 526 526 ASP ASP B . n B 2 328 PHE 328 527 527 PHE PHE B . n B 2 329 HIS 329 528 528 HIS HIS B . n B 2 330 LYS 330 529 529 LYS LYS B . n B 2 331 LEU 331 530 530 LEU LEU B . n B 2 332 GLN 332 531 531 GLN GLN B . n B 2 333 TYR 333 532 532 TYR TYR B . n B 2 334 GLU 334 533 533 GLU GLU B . n B 2 335 THR 335 534 534 THR THR B . n B 2 336 PRO 336 535 535 PRO PRO B . n B 2 337 MET 337 536 536 MET MET B . n B 2 338 THR 338 537 537 THR THR B . n B 2 339 VAL 339 538 538 VAL VAL B . n B 2 340 LYS 340 539 539 LYS LYS B . n B 2 341 LYS 341 540 540 LYS LYS B . n B 2 342 LEU 342 541 541 LEU LEU B . n B 2 343 VAL 343 542 542 VAL VAL B . n B 2 344 HIS 344 543 543 HIS HIS B . n B 2 345 HIS 345 544 544 HIS HIS B . n B 2 346 ASN 346 545 545 ASN ASN B . n B 2 347 LYS 347 546 546 LYS LYS B . n B 2 348 GLY 348 547 547 GLY GLY B . n B 2 349 LEU 349 548 548 LEU LEU B . n B 2 350 GLU 350 549 549 GLU GLU B . n B 2 351 THR 351 550 550 THR THR B . n B 2 352 THR 352 551 551 THR THR B . n B 2 353 ILE 353 552 552 ILE ILE B . n B 2 354 HIS 354 553 553 HIS HIS B . n B 2 355 LYS 355 554 554 LYS LYS B . n B 2 356 GLU 356 555 555 GLU GLU B . n B 2 357 ARG 357 556 556 ARG ARG B . n B 2 358 VAL 358 557 557 VAL VAL B . n B 2 359 GLU 359 558 558 GLU GLU B . n B 2 360 GLU 360 559 559 GLU GLU B . n B 2 361 THR 361 560 560 THR THR B . n B 2 362 LYS 362 561 561 LYS LYS B . n B 2 363 GLN 363 562 562 GLN GLN B . n B 2 364 GLN 364 563 563 GLN GLN B . n B 2 365 LEU 365 564 564 LEU LEU B . n B 2 366 GLU 366 565 565 GLU GLU B . n B 2 367 ASP 367 566 566 ASP ASP B . n B 2 368 ASN 368 567 567 ASN ASN B . n B 2 369 GLY 369 568 568 GLY GLY B . n B 2 370 LYS 370 569 569 LYS LYS B . n B 2 371 GLU 371 570 570 GLU GLU B . n B 2 372 LYS 372 571 571 LYS LYS B . n B 2 373 ILE 373 572 572 ILE ILE B . n B 2 374 GLU 374 573 573 GLU GLU B . n B 2 375 ILE 375 574 574 ILE ILE B . n B 2 376 ALA 376 575 575 ALA ALA B . n B 2 377 ASN 377 576 576 ASN ASN B . n B 2 378 ASN 378 577 577 ASN ASN B . n B 2 379 ILE 379 578 578 ILE ILE B . n B 2 380 SER 380 579 579 SER SER B . n B 2 381 LYS 381 580 580 LYS LYS B . n B 2 382 LEU 382 581 ? ? ? B . n B 2 383 GLN 383 582 ? ? ? B . n B 2 384 SER 384 583 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 199 199 MG MG A . D 4 GNP 1 200 200 GNP GNP A . E 5 MPD 1 1 1 MPD MPD A . F 5 MPD 1 177 4 MPD MPD A . G 5 MPD 1 2 2 MPD MPD B . H 5 MPD 1 3 3 MPD MPD B . I 6 HOH 1 2 2 HOH HOH A . I 6 HOH 2 178 1 HOH HOH A . I 6 HOH 3 179 3 HOH HOH A . I 6 HOH 4 180 4 HOH HOH A . I 6 HOH 5 181 5 HOH HOH A . I 6 HOH 6 182 6 HOH HOH A . I 6 HOH 7 183 7 HOH HOH A . I 6 HOH 8 184 8 HOH HOH A . I 6 HOH 9 185 9 HOH HOH A . I 6 HOH 10 186 10 HOH HOH A . I 6 HOH 11 187 11 HOH HOH A . I 6 HOH 12 188 12 HOH HOH A . I 6 HOH 13 189 13 HOH HOH A . I 6 HOH 14 190 14 HOH HOH A . I 6 HOH 15 191 15 HOH HOH A . I 6 HOH 16 192 16 HOH HOH A . I 6 HOH 17 193 17 HOH HOH A . I 6 HOH 18 194 18 HOH HOH A . I 6 HOH 19 195 19 HOH HOH A . I 6 HOH 20 196 20 HOH HOH A . I 6 HOH 21 197 21 HOH HOH A . I 6 HOH 22 198 22 HOH HOH A . I 6 HOH 23 201 23 HOH HOH A . I 6 HOH 24 202 24 HOH HOH A . I 6 HOH 25 203 25 HOH HOH A . I 6 HOH 26 204 26 HOH HOH A . J 6 HOH 1 27 27 HOH HOH B . J 6 HOH 2 28 28 HOH HOH B . J 6 HOH 3 29 29 HOH HOH B . J 6 HOH 4 30 30 HOH HOH B . J 6 HOH 5 31 31 HOH HOH B . J 6 HOH 6 32 32 HOH HOH B . J 6 HOH 7 33 33 HOH HOH B . J 6 HOH 8 34 34 HOH HOH B . J 6 HOH 9 35 35 HOH HOH B . J 6 HOH 10 36 36 HOH HOH B . J 6 HOH 11 37 37 HOH HOH B . J 6 HOH 12 38 38 HOH HOH B . J 6 HOH 13 39 39 HOH HOH B . J 6 HOH 14 40 40 HOH HOH B . J 6 HOH 15 41 41 HOH HOH B . J 6 HOH 16 42 42 HOH HOH B . J 6 HOH 17 43 43 HOH HOH B . J 6 HOH 18 44 44 HOH HOH B . J 6 HOH 19 45 45 HOH HOH B . J 6 HOH 20 46 46 HOH HOH B . J 6 HOH 21 47 47 HOH HOH B . J 6 HOH 22 48 48 HOH HOH B . J 6 HOH 23 49 49 HOH HOH B . J 6 HOH 24 50 50 HOH HOH B . J 6 HOH 25 51 51 HOH HOH B . J 6 HOH 26 52 52 HOH HOH B . J 6 HOH 27 53 53 HOH HOH B . J 6 HOH 28 54 54 HOH HOH B . J 6 HOH 29 55 55 HOH HOH B . J 6 HOH 30 56 56 HOH HOH B . J 6 HOH 31 57 57 HOH HOH B . J 6 HOH 32 58 58 HOH HOH B . J 6 HOH 33 59 59 HOH HOH B . J 6 HOH 34 60 60 HOH HOH B . J 6 HOH 35 61 61 HOH HOH B . J 6 HOH 36 62 62 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 326 ? CG ? B GLU 127 CG 2 1 Y 1 B GLU 326 ? CD ? B GLU 127 CD 3 1 Y 1 B GLU 326 ? OE1 ? B GLU 127 OE1 4 1 Y 1 B GLU 326 ? OE2 ? B GLU 127 OE2 5 1 Y 1 B LYS 327 ? CG ? B LYS 128 CG 6 1 Y 1 B LYS 327 ? CD ? B LYS 128 CD 7 1 Y 1 B LYS 327 ? CE ? B LYS 128 CE 8 1 Y 1 B LYS 327 ? NZ ? B LYS 128 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.7_650 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data scaling' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? # _cell.entry_id 3TNF _cell.length_a 103.820 _cell.length_b 103.820 _cell.length_c 150.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TNF _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3TNF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_percent_sol 60.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '50% (v/v) MPD , 0.1 M sodium cacodylate pH 5.6, 10 mM spermidine, vapor diffusion, hanging drop, temperature 293K' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 PIXEL 'PSI PILATUS 6M' 2011-03-20 ? 2 PIXEL 'PSI PILATUS 6M' 2011-03-20 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97860 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.97860 2 SYNCHROTRON 'SLS BEAMLINE X10SA' SLS X10SA ? 0.97860 # _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TNF _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.500 _reflns.number_obs 29149 _reflns.number_all ? _reflns.percent_possible_obs 99.800 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.340 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1,2 1 2.500 2.600 99.500 0.593 ? 4.590 ? ? ? ? ? ? ? 1,2 2 2.600 2.700 99.700 0.394 ? 6.580 ? ? ? ? ? ? ? 1,2 3 2.700 2.800 99.700 0.302 ? 8.120 ? ? ? ? ? ? ? 1,2 4 2.800 2.900 99.600 0.216 ? 11.380 ? ? ? ? ? ? ? 1,2 5 2.900 3.000 99.900 0.168 ? 14.510 ? ? ? ? ? ? ? 1,2 6 3.000 3.500 99.900 0.089 ? 24.040 ? ? ? ? ? ? ? 1,2 7 3.500 4.000 100.000 0.052 ? 40.250 ? ? ? ? ? ? ? 1,2 8 4.000 4.500 100.000 0.044 ? 48.250 ? ? ? ? ? ? ? 1,2 9 4.500 5.000 100.000 0.040 ? 50.310 ? ? ? ? ? ? ? 1,2 10 5.000 6.000 100.000 0.036 ? 49.700 ? ? ? ? ? ? ? 1,2 11 6.000 8.000 100.000 0.033 ? 53.960 ? ? ? ? ? ? ? 1,2 12 8.000 10.000 99.800 0.028 ? 54.980 ? ? ? ? ? ? ? 1,2 13 10.000 15.000 99.700 0.028 ? 57.620 ? ? ? ? ? ? ? 1,2 14 15.000 30.000 99.300 0.030 ? 56.210 ? ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TNF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29141 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.03 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.2189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160 _refine.ls_R_factor_R_free 0.2747 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1458 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 6.5077 _refine.aniso_B[2][2] 6.5077 _refine.aniso_B[3][3] -13.0154 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.306 _refine.solvent_model_param_bsol 47.522 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 28.34 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4463 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 4590 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 4592 'X-RAY DIFFRACTION' ? f_angle_d 1.073 ? ? 6156 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.288 ? ? 1782 'X-RAY DIFFRACTION' ? f_chiral_restr 0.073 ? ? 666 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 785 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5000 2.5894 2715 0.2662 100.00 0.3145 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.5894 2.6930 2706 0.2579 99.00 0.3299 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.6930 2.8156 2724 0.2757 100.00 0.3455 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.8156 2.9640 2719 0.2705 100.00 0.3882 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.9640 3.1497 2733 0.2632 100.00 0.3055 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.1497 3.3928 2745 0.2346 100.00 0.3230 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.3928 3.7342 2758 0.2265 100.00 0.3235 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.7342 4.2742 2778 0.1916 100.00 0.2569 . . 146 . . . . 'X-RAY DIFFRACTION' . 4.2742 5.3840 2828 0.1901 100.00 0.2317 . . 149 . . . . 'X-RAY DIFFRACTION' . 5.3840 49.0862 2977 0.2005 100.00 0.2342 . . 157 . . . . # _struct.entry_id 3TNF _struct.title 'LidA from Legionella in complex with active Rab8a' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TNF _struct_keywords.text ;Protein transport, vesicular trafficking, GTPase, Legionella pneumophila, Rab8a, vesicle recuitment, LCV, DrrA, SidM, Rab-effector, vesicular transport, GDP/GTP binding Rab-binding, ER, Golgi, Plasmamembrane ; _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RAB8A_HUMAN P61006 1 ;DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL ARDIKAKMDKK ; 6 ? 2 UNP Q5ZWZ3_LEGPH Q5ZWZ3 2 ;MLDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLT QLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKG QWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLAN LQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQ KKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISKLQS ; 201 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TNF A 4 ? 174 ? P61006 6 ? 176 ? 6 176 2 2 3TNF B 2 ? 384 ? Q5ZWZ3 201 ? 583 ? 201 583 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TNF GLY A 1 ? UNP P61006 ? ? 'expression tag' 3 1 1 3TNF HIS A 2 ? UNP P61006 ? ? 'expression tag' 4 2 1 3TNF MET A 3 ? UNP P61006 ? ? 'expression tag' 5 3 2 3TNF GLY B 1 ? UNP Q5ZWZ3 ? ? 'expression tag' 200 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5680 ? 1 MORE -74 ? 1 'SSA (A^2)' 28760 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? ASP A 29 ? GLY A 20 ASP A 31 1 ? 12 HELX_P HELX_P2 2 GLN A 65 ? ARG A 69 ? GLN A 67 ARG A 71 5 ? 5 HELX_P HELX_P3 3 ILE A 71 ? TYR A 76 ? ILE A 73 TYR A 78 5 ? 6 HELX_P HELX_P4 4 ASN A 90 ? ASN A 96 ? ASN A 92 ASN A 98 1 ? 7 HELX_P HELX_P5 5 ASN A 96 ? ALA A 108 ? ASN A 98 ALA A 110 1 ? 13 HELX_P HELX_P6 6 VAL A 123 ? ARG A 127 ? VAL A 125 ARG A 129 5 ? 5 HELX_P HELX_P7 7 SER A 130 ? GLY A 142 ? SER A 132 GLY A 144 1 ? 13 HELX_P HELX_P8 8 ASN A 155 ? LYS A 173 ? ASN A 157 LYS A 175 1 ? 19 HELX_P HELX_P9 9 ASP B 4 ? GLU B 15 ? ASP B 203 GLU B 214 1 ? 12 HELX_P HELX_P10 10 GLU B 21 ? LEU B 27 ? GLU B 220 LEU B 226 1 ? 7 HELX_P HELX_P11 11 ASP B 28 ? GLY B 50 ? ASP B 227 GLY B 249 1 ? 23 HELX_P HELX_P12 12 PHE B 51 ? THR B 56 ? PHE B 250 THR B 255 1 ? 6 HELX_P HELX_P13 13 SER B 62 ? GLU B 85 ? SER B 261 GLU B 284 1 ? 24 HELX_P HELX_P14 14 ASP B 90 ? THR B 119 ? ASP B 289 THR B 318 1 ? 30 HELX_P HELX_P15 15 SER B 134 ? ALA B 138 ? SER B 333 ALA B 337 5 ? 5 HELX_P HELX_P16 16 ASN B 169 ? SER B 216 ? ASN B 368 SER B 415 1 ? 48 HELX_P HELX_P17 17 ASP B 218 ? ARG B 250 ? ASP B 417 ARG B 449 1 ? 33 HELX_P HELX_P18 18 SER B 265 ? ALA B 269 ? SER B 464 ALA B 468 5 ? 5 HELX_P HELX_P19 19 ASP B 310 ? LYS B 315 ? ASP B 509 LYS B 514 1 ? 6 HELX_P HELX_P20 20 SER B 317 ? GLN B 332 ? SER B 516 GLN B 531 1 ? 16 HELX_P HELX_P21 21 THR B 338 ? GLU B 371 ? THR B 537 GLU B 570 1 ? 34 HELX_P HELX_P22 22 GLU B 371 ? SER B 380 ? GLU B 570 SER B 579 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A THR 20 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 22 A MG 199 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc2 metalc ? ? A THR 38 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 40 A MG 199 1_555 ? ? ? ? ? ? ? 2.613 ? ? metalc3 metalc ? ? A THR 62 O ? ? ? 1_555 C MG . MG ? ? A THR 64 A MG 199 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D GNP . O2B ? ? A MG 199 A GNP 200 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D GNP . O2G ? ? A MG 199 A GNP 200 1_555 ? ? ? ? ? ? ? 2.597 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 20 ? A THR 22 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 OG1 ? A THR 38 ? A THR 40 ? 1_555 58.9 ? 2 OG1 ? A THR 20 ? A THR 22 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O ? A THR 62 ? A THR 64 ? 1_555 141.0 ? 3 OG1 ? A THR 38 ? A THR 40 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O ? A THR 62 ? A THR 64 ? 1_555 102.9 ? 4 OG1 ? A THR 20 ? A THR 22 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2B ? D GNP . ? A GNP 200 ? 1_555 69.8 ? 5 OG1 ? A THR 38 ? A THR 40 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2B ? D GNP . ? A GNP 200 ? 1_555 96.5 ? 6 O ? A THR 62 ? A THR 64 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2B ? D GNP . ? A GNP 200 ? 1_555 149.1 ? 7 OG1 ? A THR 20 ? A THR 22 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2G ? D GNP . ? A GNP 200 ? 1_555 92.3 ? 8 OG1 ? A THR 38 ? A THR 40 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2G ? D GNP . ? A GNP 200 ? 1_555 59.3 ? 9 O ? A THR 62 ? A THR 64 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2G ? D GNP . ? A GNP 200 ? 1_555 107.9 ? 10 O2B ? D GNP . ? A GNP 200 ? 1_555 MG ? C MG . ? A MG 199 ? 1_555 O2G ? D GNP . ? A GNP 200 ? 1_555 62.6 ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 120 B . ? GLY 319 B LYS 121 B ? LYS 320 B 1 21.60 2 GLU 127 B . ? GLU 326 B LYS 128 B ? LYS 327 B 1 -1.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 42 ? LEU A 50 ? ASP A 44 LEU A 52 A 2 LYS A 53 ? ASP A 61 ? LYS A 55 ASP A 63 A 3 TYR A 5 ? ILE A 12 ? TYR A 7 ILE A 14 A 4 GLY A 81 ? ASP A 87 ? GLY A 83 ASP A 89 A 5 GLU A 113 ? ASN A 119 ? GLU A 115 ASN A 121 A 6 LYS A 144 ? GLU A 147 ? LYS A 146 GLU A 149 B 1 PRO B 131 ? VAL B 132 ? PRO B 330 VAL B 331 B 2 SER B 123 ? VAL B 125 ? SER B 322 VAL B 324 B 3 LEU B 140 ? ILE B 142 ? LEU B 339 ILE B 341 C 1 GLN B 146 ? VAL B 149 ? GLN B 345 VAL B 348 C 2 TYR B 156 ? GLN B 159 ? TYR B 355 GLN B 358 D 1 GLU B 262 ? VAL B 263 ? GLU B 461 VAL B 462 D 2 LYS B 253 ? PHE B 256 ? LYS B 452 PHE B 455 D 3 TYR B 271 ? GLY B 274 ? TYR B 470 GLY B 473 E 1 GLN B 277 ? ASN B 281 ? GLN B 476 ASN B 480 E 2 PHE B 286 ? HIS B 290 ? PHE B 485 HIS B 489 F 1 GLN B 293 ? LYS B 298 ? GLN B 492 LYS B 497 F 2 LYS B 301 ? LYS B 306 ? LYS B 500 LYS B 505 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 46 ? N ARG A 48 O LEU A 57 ? O LEU A 59 A 2 3 O TRP A 60 ? O TRP A 62 N LEU A 9 ? N LEU A 11 A 3 4 N ILE A 12 ? N ILE A 14 O VAL A 85 ? O VAL A 87 A 4 5 N LEU A 84 ? N LEU A 86 O MET A 115 ? O MET A 117 A 5 6 N ILE A 116 ? N ILE A 118 O LYS A 144 ? O LYS A 146 B 1 2 O VAL B 132 ? O VAL B 331 N TYR B 124 ? N TYR B 323 B 2 3 N SER B 123 ? N SER B 322 O ILE B 142 ? O ILE B 341 C 1 2 N GLU B 147 ? N GLU B 346 O LEU B 158 ? O LEU B 357 D 1 2 O VAL B 263 ? O VAL B 462 N PHE B 255 ? N PHE B 454 D 2 3 N SER B 254 ? N SER B 453 O ILE B 273 ? O ILE B 472 E 1 2 N PHE B 280 ? N PHE B 479 O TYR B 287 ? O TYR B 486 F 1 2 N LEU B 296 ? N LEU B 495 O TYR B 303 ? O TYR B 502 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 199 ? 5 'BINDING SITE FOR RESIDUE MG A 199' AC2 Software A GNP 200 ? 26 'BINDING SITE FOR RESIDUE GNP A 200' AC3 Software A MPD 1 ? 3 'BINDING SITE FOR RESIDUE MPD A 1' AC4 Software B MPD 2 ? 6 'BINDING SITE FOR RESIDUE MPD B 2' AC5 Software B MPD 3 ? 5 'BINDING SITE FOR RESIDUE MPD B 3' AC6 Software A MPD 177 ? 5 'BINDING SITE FOR RESIDUE MPD A 177' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 20 ? THR A 22 . ? 1_555 ? 2 AC1 5 THR A 38 ? THR A 40 . ? 1_555 ? 3 AC1 5 ASP A 61 ? ASP A 63 . ? 1_555 ? 4 AC1 5 THR A 62 ? THR A 64 . ? 1_555 ? 5 AC1 5 GNP D . ? GNP A 200 . ? 1_555 ? 6 AC2 26 SER A 15 ? SER A 17 . ? 1_555 ? 7 AC2 26 GLY A 16 ? GLY A 18 . ? 1_555 ? 8 AC2 26 VAL A 17 ? VAL A 19 . ? 1_555 ? 9 AC2 26 GLY A 18 ? GLY A 20 . ? 1_555 ? 10 AC2 26 LYS A 19 ? LYS A 21 . ? 1_555 ? 11 AC2 26 THR A 20 ? THR A 22 . ? 1_555 ? 12 AC2 26 CYS A 21 ? CYS A 23 . ? 1_555 ? 13 AC2 26 PHE A 31 ? PHE A 33 . ? 1_555 ? 14 AC2 26 ASN A 32 ? ASN A 34 . ? 1_555 ? 15 AC2 26 SER A 33 ? SER A 35 . ? 1_555 ? 16 AC2 26 PHE A 35 ? PHE A 37 . ? 1_555 ? 17 AC2 26 SER A 37 ? SER A 39 . ? 1_555 ? 18 AC2 26 THR A 38 ? THR A 40 . ? 1_555 ? 19 AC2 26 GLY A 64 ? GLY A 66 . ? 1_555 ? 20 AC2 26 ASN A 119 ? ASN A 121 . ? 1_555 ? 21 AC2 26 LYS A 120 ? LYS A 122 . ? 1_555 ? 22 AC2 26 ASP A 122 ? ASP A 124 . ? 1_555 ? 23 AC2 26 VAL A 123 ? VAL A 125 . ? 1_555 ? 24 AC2 26 SER A 149 ? SER A 151 . ? 1_555 ? 25 AC2 26 ALA A 150 ? ALA A 152 . ? 1_555 ? 26 AC2 26 LYS A 151 ? LYS A 153 . ? 1_555 ? 27 AC2 26 HOH I . ? HOH A 180 . ? 1_555 ? 28 AC2 26 HOH I . ? HOH A 183 . ? 1_555 ? 29 AC2 26 MG C . ? MG A 199 . ? 1_555 ? 30 AC2 26 HOH J . ? HOH B 62 . ? 1_555 ? 31 AC2 26 TYR B 333 ? TYR B 532 . ? 1_555 ? 32 AC3 3 ARG A 69 ? ARG A 71 . ? 1_555 ? 33 AC3 3 TRP A 100 ? TRP A 102 . ? 1_555 ? 34 AC3 3 ASN A 103 ? ASN A 105 . ? 1_555 ? 35 AC4 6 LEU B 55 ? LEU B 254 . ? 1_555 ? 36 AC4 6 GLU B 60 ? GLU B 259 . ? 1_555 ? 37 AC4 6 LEU B 135 ? LEU B 334 . ? 1_555 ? 38 AC4 6 LYS B 136 ? LYS B 335 . ? 1_555 ? 39 AC4 6 ALA B 194 ? ALA B 393 . ? 1_555 ? 40 AC4 6 LEU B 195 ? LEU B 394 . ? 1_555 ? 41 AC5 5 GLY B 34 ? GLY B 233 . ? 1_555 ? 42 AC5 5 LEU B 37 ? LEU B 236 . ? 1_555 ? 43 AC5 5 GLU B 38 ? GLU B 237 . ? 1_555 ? 44 AC5 5 THR B 351 ? THR B 550 . ? 1_555 ? 45 AC5 5 HIS B 354 ? HIS B 553 . ? 1_555 ? 46 AC6 5 TRP A 60 ? TRP A 62 . ? 1_555 ? 47 AC6 5 TYR A 75 ? TYR A 77 . ? 1_555 ? 48 AC6 5 ARG A 77 ? ARG A 79 . ? 1_555 ? 49 AC6 5 LEU B 207 ? LEU B 406 . ? 1_555 ? 50 AC6 5 ASN B 211 ? ASN B 410 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 128 ? ? -142.56 17.29 2 1 MET A 148 ? ? 179.58 142.69 3 1 ALA A 171 ? ? -49.26 -73.17 4 1 ARG B 231 ? ? -54.83 -77.77 5 1 LYS B 252 ? ? -76.37 21.63 6 1 HIS B 286 ? ? -97.40 32.47 7 1 LYS B 320 ? ? 55.87 -61.42 8 1 ASN B 342 ? ? -109.21 -157.87 9 1 GLU B 349 ? ? -116.02 65.05 10 1 GLU B 351 ? ? 47.61 -154.96 11 1 GLN B 361 ? ? -69.90 12.26 12 1 ILE B 365 ? ? -132.13 -51.47 13 1 SER B 415 ? ? -35.95 119.70 14 1 SER B 579 ? ? -75.40 23.65 # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 3.000 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 31122 _diffrn_reflns.pdbx_Rmerge_I_obs 0.120 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 1133423 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 15.00 30.00 217 ? 0.038 ? ? ? 100.00 1 10.00 15.00 597 ? 0.041 ? ? ? 100.00 1 8.00 10.00 799 ? 0.047 ? ? ? 100.00 1 6.00 8.00 2247 ? 0.077 ? ? ? 100.00 1 5.00 6.00 2845 ? 0.096 ? ? ? 100.00 1 4.50 5.00 2491 ? 0.090 ? ? ? 100.00 1 4.00 4.50 3925 ? 0.114 ? ? ? 100.00 1 3.50 4.00 6453 ? 0.168 ? ? ? 100.00 1 3.00 3.50 11524 ? 0.390 ? ? ? 100.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 3 ? A GLY 1 2 1 Y 1 A HIS 4 ? A HIS 2 3 1 Y 1 A MET 5 ? A MET 3 4 1 Y 1 A LYS 176 ? A LYS 174 5 1 Y 1 B GLY 200 ? B GLY 1 6 1 Y 1 B MET 201 ? B MET 2 7 1 Y 1 B LEU 581 ? B LEU 382 8 1 Y 1 B GLN 582 ? B GLN 383 9 1 Y 1 B SER 583 ? B SER 384 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GNP PG P N N 137 GNP O1G O N N 138 GNP O2G O N N 139 GNP O3G O N N 140 GNP N3B N N N 141 GNP PB P N R 142 GNP O1B O N N 143 GNP O2B O N N 144 GNP O3A O N N 145 GNP PA P N S 146 GNP O1A O N N 147 GNP O2A O N N 148 GNP "O5'" O N N 149 GNP "C5'" C N N 150 GNP "C4'" C N R 151 GNP "O4'" O N N 152 GNP "C3'" C N S 153 GNP "O3'" O N N 154 GNP "C2'" C N R 155 GNP "O2'" O N N 156 GNP "C1'" C N R 157 GNP N9 N Y N 158 GNP C8 C Y N 159 GNP N7 N Y N 160 GNP C5 C Y N 161 GNP C6 C Y N 162 GNP O6 O N N 163 GNP N1 N Y N 164 GNP C2 C Y N 165 GNP N2 N N N 166 GNP N3 N Y N 167 GNP C4 C Y N 168 GNP HOG2 H N N 169 GNP HOG3 H N N 170 GNP HNB3 H N N 171 GNP HOB2 H N N 172 GNP HOA2 H N N 173 GNP "H5'2" H N N 174 GNP "H5'1" H N N 175 GNP "H4'" H N N 176 GNP "H3'" H N N 177 GNP "HO3'" H N N 178 GNP "H2'" H N N 179 GNP "HO2'" H N N 180 GNP "H1'" H N N 181 GNP H8 H N N 182 GNP HN1 H N N 183 GNP HN21 H N N 184 GNP HN22 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 MG MG MG N N 299 MPD C1 C N N 300 MPD C2 C N N 301 MPD O2 O N N 302 MPD CM C N N 303 MPD C3 C N N 304 MPD C4 C N S 305 MPD O4 O N N 306 MPD C5 C N N 307 MPD H11 H N N 308 MPD H12 H N N 309 MPD H13 H N N 310 MPD HO2 H N N 311 MPD HM1 H N N 312 MPD HM2 H N N 313 MPD HM3 H N N 314 MPD H31 H N N 315 MPD H32 H N N 316 MPD H4 H N N 317 MPD HO4 H N N 318 MPD H51 H N N 319 MPD H52 H N N 320 MPD H53 H N N 321 PHE N N N N 322 PHE CA C N S 323 PHE C C N N 324 PHE O O N N 325 PHE CB C N N 326 PHE CG C Y N 327 PHE CD1 C Y N 328 PHE CD2 C Y N 329 PHE CE1 C Y N 330 PHE CE2 C Y N 331 PHE CZ C Y N 332 PHE OXT O N N 333 PHE H H N N 334 PHE H2 H N N 335 PHE HA H N N 336 PHE HB2 H N N 337 PHE HB3 H N N 338 PHE HD1 H N N 339 PHE HD2 H N N 340 PHE HE1 H N N 341 PHE HE2 H N N 342 PHE HZ H N N 343 PHE HXT H N N 344 PRO N N N N 345 PRO CA C N S 346 PRO C C N N 347 PRO O O N N 348 PRO CB C N N 349 PRO CG C N N 350 PRO CD C N N 351 PRO OXT O N N 352 PRO H H N N 353 PRO HA H N N 354 PRO HB2 H N N 355 PRO HB3 H N N 356 PRO HG2 H N N 357 PRO HG3 H N N 358 PRO HD2 H N N 359 PRO HD3 H N N 360 PRO HXT H N N 361 SER N N N N 362 SER CA C N S 363 SER C C N N 364 SER O O N N 365 SER CB C N N 366 SER OG O N N 367 SER OXT O N N 368 SER H H N N 369 SER H2 H N N 370 SER HA H N N 371 SER HB2 H N N 372 SER HB3 H N N 373 SER HG H N N 374 SER HXT H N N 375 THR N N N N 376 THR CA C N S 377 THR C C N N 378 THR O O N N 379 THR CB C N R 380 THR OG1 O N N 381 THR CG2 C N N 382 THR OXT O N N 383 THR H H N N 384 THR H2 H N N 385 THR HA H N N 386 THR HB H N N 387 THR HG1 H N N 388 THR HG21 H N N 389 THR HG22 H N N 390 THR HG23 H N N 391 THR HXT H N N 392 TRP N N N N 393 TRP CA C N S 394 TRP C C N N 395 TRP O O N N 396 TRP CB C N N 397 TRP CG C Y N 398 TRP CD1 C Y N 399 TRP CD2 C Y N 400 TRP NE1 N Y N 401 TRP CE2 C Y N 402 TRP CE3 C Y N 403 TRP CZ2 C Y N 404 TRP CZ3 C Y N 405 TRP CH2 C Y N 406 TRP OXT O N N 407 TRP H H N N 408 TRP H2 H N N 409 TRP HA H N N 410 TRP HB2 H N N 411 TRP HB3 H N N 412 TRP HD1 H N N 413 TRP HE1 H N N 414 TRP HE3 H N N 415 TRP HZ2 H N N 416 TRP HZ3 H N N 417 TRP HH2 H N N 418 TRP HXT H N N 419 TYR N N N N 420 TYR CA C N S 421 TYR C C N N 422 TYR O O N N 423 TYR CB C N N 424 TYR CG C Y N 425 TYR CD1 C Y N 426 TYR CD2 C Y N 427 TYR CE1 C Y N 428 TYR CE2 C Y N 429 TYR CZ C Y N 430 TYR OH O N N 431 TYR OXT O N N 432 TYR H H N N 433 TYR H2 H N N 434 TYR HA H N N 435 TYR HB2 H N N 436 TYR HB3 H N N 437 TYR HD1 H N N 438 TYR HD2 H N N 439 TYR HE1 H N N 440 TYR HE2 H N N 441 TYR HH H N N 442 TYR HXT H N N 443 VAL N N N N 444 VAL CA C N S 445 VAL C C N N 446 VAL O O N N 447 VAL CB C N N 448 VAL CG1 C N N 449 VAL CG2 C N N 450 VAL OXT O N N 451 VAL H H N N 452 VAL H2 H N N 453 VAL HA H N N 454 VAL HB H N N 455 VAL HG11 H N N 456 VAL HG12 H N N 457 VAL HG13 H N N 458 VAL HG21 H N N 459 VAL HG22 H N N 460 VAL HG23 H N N 461 VAL HXT H N N 462 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GNP PG O1G doub N N 129 GNP PG O2G sing N N 130 GNP PG O3G sing N N 131 GNP PG N3B sing N N 132 GNP O2G HOG2 sing N N 133 GNP O3G HOG3 sing N N 134 GNP N3B PB sing N N 135 GNP N3B HNB3 sing N N 136 GNP PB O1B doub N N 137 GNP PB O2B sing N N 138 GNP PB O3A sing N N 139 GNP O2B HOB2 sing N N 140 GNP O3A PA sing N N 141 GNP PA O1A doub N N 142 GNP PA O2A sing N N 143 GNP PA "O5'" sing N N 144 GNP O2A HOA2 sing N N 145 GNP "O5'" "C5'" sing N N 146 GNP "C5'" "C4'" sing N N 147 GNP "C5'" "H5'2" sing N N 148 GNP "C5'" "H5'1" sing N N 149 GNP "C4'" "O4'" sing N N 150 GNP "C4'" "C3'" sing N N 151 GNP "C4'" "H4'" sing N N 152 GNP "O4'" "C1'" sing N N 153 GNP "C3'" "O3'" sing N N 154 GNP "C3'" "C2'" sing N N 155 GNP "C3'" "H3'" sing N N 156 GNP "O3'" "HO3'" sing N N 157 GNP "C2'" "O2'" sing N N 158 GNP "C2'" "C1'" sing N N 159 GNP "C2'" "H2'" sing N N 160 GNP "O2'" "HO2'" sing N N 161 GNP "C1'" N9 sing N N 162 GNP "C1'" "H1'" sing N N 163 GNP N9 C8 sing Y N 164 GNP N9 C4 sing Y N 165 GNP C8 N7 doub Y N 166 GNP C8 H8 sing N N 167 GNP N7 C5 sing Y N 168 GNP C5 C6 sing Y N 169 GNP C5 C4 doub Y N 170 GNP C6 O6 doub N N 171 GNP C6 N1 sing Y N 172 GNP N1 C2 sing Y N 173 GNP N1 HN1 sing N N 174 GNP C2 N2 sing N N 175 GNP C2 N3 doub Y N 176 GNP N2 HN21 sing N N 177 GNP N2 HN22 sing N N 178 GNP N3 C4 sing Y N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 MPD C1 C2 sing N N 288 MPD C1 H11 sing N N 289 MPD C1 H12 sing N N 290 MPD C1 H13 sing N N 291 MPD C2 O2 sing N N 292 MPD C2 CM sing N N 293 MPD C2 C3 sing N N 294 MPD O2 HO2 sing N N 295 MPD CM HM1 sing N N 296 MPD CM HM2 sing N N 297 MPD CM HM3 sing N N 298 MPD C3 C4 sing N N 299 MPD C3 H31 sing N N 300 MPD C3 H32 sing N N 301 MPD C4 O4 sing N N 302 MPD C4 C5 sing N N 303 MPD C4 H4 sing N N 304 MPD O4 HO4 sing N N 305 MPD C5 H51 sing N N 306 MPD C5 H52 sing N N 307 MPD C5 H53 sing N N 308 PHE N CA sing N N 309 PHE N H sing N N 310 PHE N H2 sing N N 311 PHE CA C sing N N 312 PHE CA CB sing N N 313 PHE CA HA sing N N 314 PHE C O doub N N 315 PHE C OXT sing N N 316 PHE CB CG sing N N 317 PHE CB HB2 sing N N 318 PHE CB HB3 sing N N 319 PHE CG CD1 doub Y N 320 PHE CG CD2 sing Y N 321 PHE CD1 CE1 sing Y N 322 PHE CD1 HD1 sing N N 323 PHE CD2 CE2 doub Y N 324 PHE CD2 HD2 sing N N 325 PHE CE1 CZ doub Y N 326 PHE CE1 HE1 sing N N 327 PHE CE2 CZ sing Y N 328 PHE CE2 HE2 sing N N 329 PHE CZ HZ sing N N 330 PHE OXT HXT sing N N 331 PRO N CA sing N N 332 PRO N CD sing N N 333 PRO N H sing N N 334 PRO CA C sing N N 335 PRO CA CB sing N N 336 PRO CA HA sing N N 337 PRO C O doub N N 338 PRO C OXT sing N N 339 PRO CB CG sing N N 340 PRO CB HB2 sing N N 341 PRO CB HB3 sing N N 342 PRO CG CD sing N N 343 PRO CG HG2 sing N N 344 PRO CG HG3 sing N N 345 PRO CD HD2 sing N N 346 PRO CD HD3 sing N N 347 PRO OXT HXT sing N N 348 SER N CA sing N N 349 SER N H sing N N 350 SER N H2 sing N N 351 SER CA C sing N N 352 SER CA CB sing N N 353 SER CA HA sing N N 354 SER C O doub N N 355 SER C OXT sing N N 356 SER CB OG sing N N 357 SER CB HB2 sing N N 358 SER CB HB3 sing N N 359 SER OG HG sing N N 360 SER OXT HXT sing N N 361 THR N CA sing N N 362 THR N H sing N N 363 THR N H2 sing N N 364 THR CA C sing N N 365 THR CA CB sing N N 366 THR CA HA sing N N 367 THR C O doub N N 368 THR C OXT sing N N 369 THR CB OG1 sing N N 370 THR CB CG2 sing N N 371 THR CB HB sing N N 372 THR OG1 HG1 sing N N 373 THR CG2 HG21 sing N N 374 THR CG2 HG22 sing N N 375 THR CG2 HG23 sing N N 376 THR OXT HXT sing N N 377 TRP N CA sing N N 378 TRP N H sing N N 379 TRP N H2 sing N N 380 TRP CA C sing N N 381 TRP CA CB sing N N 382 TRP CA HA sing N N 383 TRP C O doub N N 384 TRP C OXT sing N N 385 TRP CB CG sing N N 386 TRP CB HB2 sing N N 387 TRP CB HB3 sing N N 388 TRP CG CD1 doub Y N 389 TRP CG CD2 sing Y N 390 TRP CD1 NE1 sing Y N 391 TRP CD1 HD1 sing N N 392 TRP CD2 CE2 doub Y N 393 TRP CD2 CE3 sing Y N 394 TRP NE1 CE2 sing Y N 395 TRP NE1 HE1 sing N N 396 TRP CE2 CZ2 sing Y N 397 TRP CE3 CZ3 doub Y N 398 TRP CE3 HE3 sing N N 399 TRP CZ2 CH2 doub Y N 400 TRP CZ2 HZ2 sing N N 401 TRP CZ3 CH2 sing Y N 402 TRP CZ3 HZ3 sing N N 403 TRP CH2 HH2 sing N N 404 TRP OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # _atom_sites.entry_id 3TNF _atom_sites.fract_transf_matrix[1][1] 0.009632 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009632 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006640 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_