HEADER HYDROLASE 23-SEP-11 3TXF TITLE HEWL CO-CRYSTALLIZATION WITH CISPLATIN IN DMSO MEDIA WITH GLYCEROL AS TITLE 2 THE CRYOPROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE KEYWDS HEN EGG WHITE LYSOZYME (HEWL), BACTERIAL CELL WALL LYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.M.TANLEY,A.M.M.SCHREURS,J.R.HELLIWELL,L.M.J.KROON-BATENBURG REVDAT 3 13-SEP-23 3TXF 1 REMARK LINK REVDAT 2 27-MAR-13 3TXF 1 JRNL REVDAT 1 30-JAN-13 3TXF 0 JRNL AUTH S.W.TANLEY,A.M.SCHREURS,J.R.HELLIWELL,L.M.KROON-BATENBURG JRNL TITL EXPERIENCE WITH EXCHANGE AND ARCHIVING OF RAW DATA: JRNL TITL 2 COMPARISON OF DATA FROM TWO DIFFRACTOMETERS AND FOUR JRNL TITL 3 SOFTWARE PACKAGES ON A SERIES OF LYSOZYME CRYSTALS. JRNL REF J.APPL.CRYSTALLOGR. V. 46 108 2013 JRNL REFN ISSN 0021-8898 JRNL PMID 23396873 JRNL DOI 10.1107/S0021889812044172 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 12148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 437 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 201 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1183 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1546 ; 2.071 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 6.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;38.365 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 166 ;13.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.948 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 794 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 651 ; 1.278 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1040 ; 1.877 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 532 ; 3.162 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 506 ; 4.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3785 -0.5062 -8.8712 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0067 REMARK 3 T33: 0.0188 T12: -0.0002 REMARK 3 T13: 0.0052 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.9794 L22: 1.1398 REMARK 3 L33: 0.5827 L12: 0.5160 REMARK 3 L13: 0.1475 L23: 0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.0349 S13: -0.0808 REMARK 3 S21: 0.0007 S22: -0.0163 S23: -0.0279 REMARK 3 S31: 0.0252 S32: -0.0171 S33: -0.0100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3TXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NONE REMARK 200 OPTICS : INCOATEC HELIOS CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 55.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 13.11 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.96 REMARK 200 R MERGE FOR SHELL (I) : 0.15500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MOLECULAR REPLACEMENT REMARK 200 STARTING MODEL: PDB ENTRY 2W1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 49 MG HEWL + 3 MG CISPLATIN IN 462.5 REMARK 280 UL 0.04 M SODIUM ACETATE + 75 UL DMSO + 462.5 UL 10% SODIUM REMARK 280 CHLORIDE, WITH GLYCEROL AS CRYOPROTECTANT, PH 4.7, BATCH, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.48550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.22150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.22150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.72825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.22150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.22150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.22150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.22150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.72825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.22150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.22150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.48550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 55 CG1 - CB - CG2 ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 130 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 ND1 REMARK 620 2 CPT A 130 N1 165.5 REMARK 620 3 CPT A 130 N2 101.3 92.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1138 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.3 REMARK 620 3 SER A 72 OG 91.0 166.6 REMARK 620 4 ARG A 73 O 91.8 92.3 101.0 REMARK 620 5 DMS A 148 O 148.4 102.5 70.2 116.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: FC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I6Z RELATED DB: PDB REMARK 900 X-RAY DIFFRACTION STUDIES OF ADDUCTS BETWEEN ANTICANCER PLATINUM REMARK 900 DRUGS AND HEN EGG WHITE LYSOZYME REMARK 900 RELATED ID: 3TXB RELATED DB: PDB REMARK 900 RELATED ID: 3TXC RELATED DB: PDB REMARK 900 RELATED ID: 3TXD RELATED DB: PDB REMARK 900 RELATED ID: 3TXE RELATED DB: PDB REMARK 900 RELATED ID: 3TXG RELATED DB: PDB REMARK 900 RELATED ID: 3TXH RELATED DB: PDB REMARK 900 RELATED ID: 3TXI RELATED DB: PDB REMARK 900 RELATED ID: 3TXJ RELATED DB: PDB REMARK 900 RELATED ID: 3TXK RELATED DB: PDB REMARK 900 RELATED ID: 3TXL RELATED DB: PDB DBREF 3TXF A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A1130 1 HET CL A1131 1 HET CL A1132 1 HET CL A1134 1 HET CL A1135 1 HET CL A1136 1 HET CL A1137 1 HET NA A1138 1 HET CPT A 130 3 HET DMS A 131 4 HET DMS A 132 4 HET DMS A 133 4 HET DMS A 134 4 HET DMS A 135 4 HET DMS A 136 4 HET DMS A 137 4 HET DMS A 138 4 HET GOL A 801 6 HET GOL A 139 6 HET GOL A 140 6 HET GOL A 141 6 HET GOL A 142 6 HET GOL A 143 6 HET GOL A 144 6 HET GOL A 145 6 HET GOL A 146 6 HET GOL A 147 6 HET DMS A 148 4 HET DMS A 149 4 HET DMS A 150 4 HET DMS A 151 4 HET DMS A 152 4 HET DMS A 153 4 HET DMS A 154 4 HET DMS A 155 4 HET GOL A 156 6 HET GOL A 157 6 HET GOL A 158 6 HET GOL A 159 6 HET GOL A 160 6 HET GOL A 161 6 HET GOL A 162 6 HET GOL A 163 6 HET GOL A 164 6 HET GOL A 165 6 HET GOL A 166 6 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM CPT CISPLATIN HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN CPT DIAMMINE(DICHLORO)PLATINUM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL 7(CL 1-) FORMUL 9 NA NA 1+ FORMUL 10 CPT CL2 H6 N2 PT FORMUL 11 DMS 16(C2 H6 O S) FORMUL 19 GOL 21(C3 H8 O3) FORMUL 48 HOH *107(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ARG A 125 5 7 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.00 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 LINK ND1 HIS A 15 PT1 CPT A 130 1555 1555 2.42 LINK O SER A 60 NA NA A1138 1555 1555 2.28 LINK O CYS A 64 NA NA A1138 1555 1555 2.32 LINK OG SER A 72 NA NA A1138 1555 1555 2.57 LINK O ARG A 73 NA NA A1138 1555 1555 2.46 LINK O DMS A 148 NA NA A1138 1555 1555 2.12 SITE 1 AC1 3 TYR A 23 ASN A 113 DMS A 133 SITE 1 AC2 5 SER A 24 GLY A 26 GLN A 121 GOL A 146 SITE 2 AC2 5 GOL A 156 SITE 1 AC3 7 GLY A 67 ARG A 68 THR A 69 SER A 72 SITE 2 AC3 7 DMS A 148 DMS A 153 HOH A2029 SITE 1 AC4 3 PHE A 38 DMS A 135 GOL A 159 SITE 1 AC5 3 ASN A 65 PRO A 79 GOL A 165 SITE 1 AC6 2 ARG A 73 ASN A 74 SITE 1 AC7 4 ALA A 42 ARG A 68 GOL A 142 HOH A2044 SITE 1 AC8 5 SER A 60 CYS A 64 SER A 72 ARG A 73 SITE 2 AC8 5 DMS A 148 SITE 1 AC9 2 HIS A 15 GOL A 143 SITE 1 BC1 8 ARG A 5 TRP A 123 GOL A 139 GOL A 147 SITE 2 BC1 8 DMS A 149 GOL A 159 GOL A 162 HOH A2048 SITE 1 BC2 5 ALA A 10 LYS A 13 ARG A 14 ARG A 128 SITE 2 BC2 5 LEU A 129 SITE 1 BC3 7 ARG A 21 GLU A 35 GOL A 141 CL A1130 SITE 2 BC3 7 HOH A2038 HOH A2041 HOH A2043 SITE 1 BC4 5 ARG A 45 ASN A 46 ARG A 128 DMS A 136 SITE 2 BC4 5 GOL A 143 SITE 1 BC5 12 LYS A 33 ASN A 37 TRP A 62 ARG A 73 SITE 2 BC5 12 DMS A 155 GOL A 156 GOL A 157 GOL A 159 SITE 3 BC5 12 GOL A 163 CL A1134 HOH A2045 HOH A2046 SITE 1 BC6 4 GLY A 16 LYS A 96 DMS A 134 GOL A 143 SITE 1 BC7 4 PRO A 79 SER A 86 DMS A 151 GOL A 165 SITE 1 BC8 8 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 BC8 8 ILE A 98 ALA A 107 HOH A2069 HOH A2112 SITE 1 BC9 8 ARG A 61 TRP A 62 GLY A 71 GOL A 146 SITE 2 BC9 8 GOL A 156 HOH A2046 HOH A2072 HOH A2083 SITE 1 CC1 11 ARG A 5 SER A 100 ASP A 101 GLY A 102 SITE 2 CC1 11 DMS A 131 GOL A 141 GOL A 145 GOL A 147 SITE 3 CC1 11 DMS A 152 GOL A 166 HOH A2133 SITE 1 CC2 7 TRP A 63 LEU A 75 ASP A 101 DMS A 155 SITE 2 CC2 7 GOL A 159 GOL A 160 GOL A 163 SITE 1 CC3 8 ARG A 21 VAL A 99 GLY A 102 VAL A 109 SITE 2 CC3 8 DMS A 133 GOL A 139 GOL A 145 HOH A2109 SITE 1 CC4 7 ASN A 19 ARG A 45 ARG A 68 DMS A 150 SITE 2 CC4 7 GOL A 164 CL A1137 HOH A2024 SITE 1 CC5 6 ARG A 14 GLY A 16 ARG A 128 CPT A 130 SITE 2 CC5 6 DMS A 134 DMS A 136 SITE 1 CC6 4 LYS A 13 PRO A 70 LEU A 129 GOL A 158 SITE 1 CC7 6 ARG A 21 ARG A 125 GLY A 126 GOL A 139 SITE 2 CC7 6 GOL A 141 DMS A 152 SITE 1 CC8 7 GLN A 121 ILE A 124 DMS A 150 GOL A 156 SITE 2 CC8 7 GOL A 164 GOL A 801 CL A1131 SITE 1 CC9 8 ASP A 101 ASN A 103 ASP A 119 DMS A 131 SITE 2 CC9 8 GOL A 139 GOL A 159 GOL A 162 GOL A 166 SITE 1 DC1 10 SER A 60 CYS A 64 ASN A 65 ASP A 66 SITE 2 DC1 10 GLY A 67 ARG A 68 THR A 69 SER A 72 SITE 3 DC1 10 CL A1132 NA A1138 SITE 1 DC2 9 PHE A 34 THR A 118 DMS A 131 GOL A 157 SITE 2 DC2 9 GOL A 159 GOL A 162 HOH A2125 HOH A2128 SITE 3 DC2 9 HOH A2131 SITE 1 DC3 6 ASN A 37 ARG A 68 GOL A 142 GOL A 146 SITE 2 DC3 6 GOL A 164 HOH A2078 SITE 1 DC4 5 ILE A 78 PRO A 79 DMS A 137 HOH A2034 SITE 2 DC4 5 HOH A2088 SITE 1 DC5 5 ARG A 5 SER A 100 GOL A 139 GOL A 145 SITE 2 DC5 5 GOL A 160 SITE 1 DC6 6 SER A 72 CL A1132 HOH A2029 HOH A2075 SITE 2 DC6 6 HOH A2079 HOH A2081 SITE 1 DC7 3 ASN A 103 ASN A 106 ALA A 107 SITE 1 DC8 6 GLY A 4 ARG A 5 LEU A 75 DMS A 135 SITE 2 DC8 6 GOL A 140 GOL A 160 SITE 1 DC9 12 SER A 24 ASN A 37 VAL A 120 GLN A 121 SITE 2 DC9 12 DMS A 135 GOL A 146 GOL A 157 GOL A 163 SITE 3 DC9 12 GOL A 164 GOL A 801 CL A1131 HOH A2046 SITE 1 EC1 12 SER A 24 LYS A 33 PHE A 34 ASN A 37 SITE 2 EC1 12 DMS A 135 DMS A 149 GOL A 156 GOL A 159 SITE 3 EC1 12 GOL A 164 HOH A2031 HOH A2036 HOH A2116 SITE 1 EC2 6 ASP A 48 ARG A 61 THR A 69 PRO A 70 SITE 2 EC2 6 SER A 72 GOL A 144 SITE 1 EC3 9 TRP A 123 DMS A 131 DMS A 135 GOL A 140 SITE 2 EC3 9 GOL A 147 DMS A 149 GOL A 157 GOL A 163 SITE 3 EC3 9 CL A1134 SITE 1 EC4 6 LEU A 75 LYS A 97 GOL A 140 DMS A 152 SITE 2 EC4 6 DMS A 155 HOH A2008 SITE 1 EC5 5 TYR A 20 LYS A 96 LYS A 97 SER A 100 SITE 2 EC5 5 HOH A2103 SITE 1 EC6 8 GLY A 117 THR A 118 ASP A 119 DMS A 131 SITE 2 EC6 8 GOL A 147 DMS A 149 GOL A 166 HOH A2124 SITE 1 EC7 8 TRP A 62 ASP A 119 GLN A 121 ARG A 125 SITE 2 EC7 8 DMS A 135 GOL A 140 GOL A 156 GOL A 159 SITE 1 EC8 11 ASN A 19 GLY A 22 SER A 24 ASN A 37 SITE 2 EC8 11 GOL A 142 GOL A 146 DMS A 150 GOL A 156 SITE 3 EC8 11 GOL A 157 HOH A2036 HOH A2116 SITE 1 EC9 5 LYS A 1 DMS A 137 CL A1135 HOH A2003 SITE 2 EC9 5 HOH A2076 SITE 1 FC1 6 GLY A 102 ASN A 103 ARG A 112 GOL A 139 SITE 2 FC1 6 GOL A 147 GOL A 162 CRYST1 78.443 78.443 36.971 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027048 0.00000