data_3TZR # _entry.id 3TZR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TZR pdb_00003tzr 10.2210/pdb3tzr/pdb NDB NA1319 ? ? RCSB RCSB068124 ? ? WWPDB D_1000068124 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2NOK _pdbx_database_related.details 'Same RNA target without ligand' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TZR _pdbx_database_status.recvd_initial_deposition_date 2011-09-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dibrov, S.M.' 1 'Ding, K.' 2 'Brunn, N.' 3 'Parker, M.A.' 4 'Bergdahl, B.M.' 5 'Wyles, D.L.' 6 'Hermann, T.' 7 # _citation.id primary _citation.title 'Structure of a Riboswitch in the Hepatitis C Virus Internal Ribosome Entry Site' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hermann, T.' 1 ? primary 'Dibrov, S.' 2 ? primary 'Ding, K.' 3 ? primary 'Brunn, N.' 4 ? primary 'Parker, M.' 5 ? primary 'Bergdahl, M.' 6 ? primary 'Wyles, D.' 7 ? # _cell.entry_id 3TZR _cell.length_a 32.054 _cell.length_b 33.582 _cell.length_c 81.046 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TZR _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*CP*C)-3'" 6319.790 1 ? ? ? 'HCV IRES subdomain IIa chain A' 2 polymer syn "5'-R(*GP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*GP*G)-3'" 5145.095 1 ? ? ? 'HCV IRES subdomain IIa chain B' 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 5 non-polymer syn '(8R)-8-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-1,7,8,9-tetrahydrochromeno[5,6-d]imidazol-2-amine' 331.456 1 ? ? ? ? 6 water nat water 18.015 81 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGAGGAACUACUGUCUUCCC CGAGGAACUACUGUCUUCCC A ? 2 polyribonucleotide no no GGUCGUGCAGCCUCGG GGUCGUGCAGCCUCGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 A n 1 4 G n 1 5 G n 1 6 A n 1 7 A n 1 8 C n 1 9 U n 1 10 A n 1 11 C n 1 12 U n 1 13 G n 1 14 U n 1 15 C n 1 16 U n 1 17 U n 1 18 C n 1 19 C n 1 20 C n 2 1 G n 2 2 G n 2 3 U n 2 4 C n 2 5 G n 2 6 U n 2 7 G n 2 8 C n 2 9 A n 2 10 G n 2 11 C n 2 12 C n 2 13 U n 2 14 C n 2 15 G n 2 16 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'Hepatitis C virus' HCV 11103 ? 2 1 sample ? ? 'Hepatitis C virus' HCV 11103 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3TZR 3TZR 1 ? CGAGGAACUACUGUCUUCCC ? 2 PDB 3TZR 3TZR 2 ? GGUCGUGCAGCCUCGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TZR A 1 ? 20 ? 3TZR 48 ? 67 ? 48 67 2 2 3TZR B 1 ? 16 ? 3TZR 101 ? 116 ? 101 116 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 SS0 non-polymer . '(8R)-8-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-1,7,8,9-tetrahydrochromeno[5,6-d]imidazol-2-amine' ? 'C18 H29 N5 O' 331.456 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3TZR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10 mM magnesium sulfate, 50 mM sodium cacodylate, 2.0 M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K' # _diffrn.id 1 _diffrn.ambient_temp 173.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2011-05-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TZR _reflns.observed_criterion_sigma_I 1.35 _reflns.observed_criterion_sigma_F 1.35 _reflns.d_resolution_low 16.8 _reflns.d_resolution_high 2.2 _reflns.number_obs 4664 _reflns.number_all 4704 _reflns.percent_possible_obs 99.15 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 75.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TZR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4664 _refine.ls_number_reflns_all 4704 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.791 _refine.ls_d_res_high 2.212 _refine.ls_percent_reflns_obs 99.15 _refine.ls_R_factor_obs 0.1815 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1790 _refine.ls_R_factor_R_free 0.2380 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.52 _refine.ls_number_reflns_R_free 211 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.7418 _refine.aniso_B[2][2] -2.4473 _refine.aniso_B[3][3] 1.7055 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.404 _refine.solvent_model_param_bsol 35.079 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.61 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2NOK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.83 _refine.pdbx_overall_phase_error 23.58 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 757 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 883 _refine_hist.d_res_high 2.212 _refine_hist.d_res_low 16.791 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 881 'X-RAY DIFFRACTION' ? f_angle_d 1.313 ? ? 1365 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.890 ? ? 436 'X-RAY DIFFRACTION' ? f_chiral_restr 0.073 ? ? 179 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 37 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.2121 2.7850 2160 0.2302 98.00 0.3745 . . 96 . . . . 'X-RAY DIFFRACTION' . 2.7850 16.7915 2293 0.1615 100.00 0.1958 . . 115 . . . . # _struct.entry_id 3TZR _struct.title 'Structure of a Riboswitch-like RNA-ligand complex from the Hepatitis C Virus Internal Ribosome Entry Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TZR _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'internal loop, regulatory motif, aminobenzimidazole binding, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 3 ? M N N 6 ? N N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 A U 9 OP1 ? ? A MG 1 A U 56 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 A U 12 O4 ? ? A MG 1 A U 59 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 1 A HOH 80 1_555 ? ? ? ? ? ? ? 2.754 ? ? metalc4 metalc ? ? M HOH . O ? ? ? 1_555 L MG . MG ? ? A HOH 8 B MG 1 1_555 ? ? ? ? ? ? ? 2.786 ? ? metalc5 metalc ? ? A U 9 OP2 ? ? ? 1_555 D MG . MG ? ? A U 56 A MG 68 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 I SO4 . O4 ? ? A MG 69 A SO4 73 1_555 ? ? ? ? ? ? ? 2.970 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 B C 8 OP2 ? ? A MG 70 B C 108 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc8 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 71 A HOH 83 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc9 metalc ? ? L MG . MG ? ? ? 1_555 B C 14 "O2'" ? ? B MG 1 B C 114 1_555 ? ? ? ? ? ? ? 2.893 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 48 B G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 48 B G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 48 B G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 13 N3 ? ? A A 50 B U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 13 O4 ? ? A A 50 B U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 B A 9 N6 ? ? A A 53 B A 109 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 B A 9 N7 ? ? A A 53 B A 109 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog17 hydrog ? ? A A 10 N6 ? ? ? 1_555 B C 11 O2 ? ? A A 57 B C 111 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog18 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 14 N3 ? ? ? 1_555 B G 7 O6 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 14 O2 ? ? ? 1_555 B G 7 N1 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 N3 ? ? ? 1_555 B C 4 N3 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 O4 ? ? ? 1_555 B C 4 N4 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog33 hydrog ? ? A U 17 N3 ? ? ? 1_555 B U 3 O2 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog34 hydrog ? ? A U 17 O4 ? ? ? 1_555 B U 3 N3 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog35 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 66 B G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 66 B G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 66 B G 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1 ? 5 'BINDING SITE FOR RESIDUE MG A 1' AC2 Software A MG 68 ? 4 'BINDING SITE FOR RESIDUE MG A 68' AC3 Software B MG 1 ? 5 'BINDING SITE FOR RESIDUE MG B 1' AC4 Software A MG 69 ? 6 'BINDING SITE FOR RESIDUE MG A 69' AC5 Software A MG 70 ? 3 'BINDING SITE FOR RESIDUE MG A 70' AC6 Software A MG 71 ? 4 'BINDING SITE FOR RESIDUE MG A 71' AC7 Software A SO4 72 ? 4 'BINDING SITE FOR RESIDUE SO4 A 72' AC8 Software A SO4 73 ? 6 'BINDING SITE FOR RESIDUE SO4 A 73' AC9 Software A SO4 74 ? 4 'BINDING SITE FOR RESIDUE SO4 A 74' BC1 Software A SS0 75 ? 9 'BINDING SITE FOR RESIDUE SS0 A 75' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 C A 8 ? C A 55 . ? 1_555 ? 2 AC1 5 U A 9 ? U A 56 . ? 1_555 ? 3 AC1 5 C A 11 ? C A 58 . ? 1_555 ? 4 AC1 5 U A 12 ? U A 59 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH A 80 . ? 1_555 ? 6 AC2 4 G A 5 ? G A 52 . ? 1_555 ? 7 AC2 4 U A 9 ? U A 56 . ? 1_555 ? 8 AC2 4 A A 10 ? A A 57 . ? 1_555 ? 9 AC2 4 MG E . ? MG A 69 . ? 1_555 ? 10 AC3 5 HOH M . ? HOH A 8 . ? 1_555 ? 11 AC3 5 U A 9 ? U A 56 . ? 3_644 ? 12 AC3 5 C A 11 ? C A 58 . ? 3_644 ? 13 AC3 5 C B 14 ? C B 114 . ? 1_555 ? 14 AC3 5 G B 15 ? G B 115 . ? 1_555 ? 15 AC4 6 G A 5 ? G A 52 . ? 1_555 ? 16 AC4 6 MG D . ? MG A 68 . ? 1_555 ? 17 AC4 6 SO4 I . ? SO4 A 73 . ? 1_555 ? 18 AC4 6 HOH M . ? HOH A 87 . ? 1_555 ? 19 AC4 6 HOH N . ? HOH B 69 . ? 1_555 ? 20 AC4 6 C B 12 ? C B 112 . ? 1_555 ? 21 AC5 3 A A 6 ? A A 53 . ? 1_555 ? 22 AC5 3 SS0 K . ? SS0 A 75 . ? 1_555 ? 23 AC5 3 C B 8 ? C B 108 . ? 1_555 ? 24 AC6 4 A A 7 ? A A 54 . ? 1_555 ? 25 AC6 4 HOH M . ? HOH A 83 . ? 1_555 ? 26 AC6 4 HOH N . ? HOH B 67 . ? 3_654 ? 27 AC6 4 G B 15 ? G B 115 . ? 3_654 ? 28 AC7 4 G A 2 ? G A 49 . ? 3_654 ? 29 AC7 4 A A 3 ? A A 50 . ? 3_654 ? 30 AC7 4 A A 7 ? A A 54 . ? 1_555 ? 31 AC7 4 HOH M . ? HOH A 79 . ? 1_555 ? 32 AC8 6 G A 4 ? G A 51 . ? 1_555 ? 33 AC8 6 G A 5 ? G A 52 . ? 1_555 ? 34 AC8 6 MG E . ? MG A 69 . ? 1_555 ? 35 AC8 6 HOH N . ? HOH B 69 . ? 1_555 ? 36 AC8 6 HOH N . ? HOH B 70 . ? 1_555 ? 37 AC8 6 U B 13 ? U B 113 . ? 1_555 ? 38 AC9 4 C A 19 ? C A 66 . ? 1_555 ? 39 AC9 4 C A 20 ? C A 67 . ? 1_555 ? 40 AC9 4 HOH M . ? HOH A 77 . ? 1_555 ? 41 AC9 4 HOH M . ? HOH A 78 . ? 1_555 ? 42 BC1 9 G A 5 ? G A 52 . ? 1_555 ? 43 BC1 9 A A 6 ? A A 53 . ? 1_555 ? 44 BC1 9 U A 9 ? U A 56 . ? 1_555 ? 45 BC1 9 MG F . ? MG A 70 . ? 1_555 ? 46 BC1 9 HOH M . ? HOH A 92 . ? 1_555 ? 47 BC1 9 HOH N . ? HOH B 6 . ? 1_555 ? 48 BC1 9 A B 9 ? A B 109 . ? 1_555 ? 49 BC1 9 G B 10 ? G B 110 . ? 1_555 ? 50 BC1 9 C B 11 ? C B 111 . ? 1_555 ? # _database_PDB_matrix.entry_id 3TZR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3TZR _atom_sites.fract_transf_matrix[1][1] 0.031197 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029778 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012339 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 48 48 C C A . n A 1 2 G 2 49 49 G G A . n A 1 3 A 3 50 50 A A A . n A 1 4 G 4 51 51 G G A . n A 1 5 G 5 52 52 G G A . n A 1 6 A 6 53 53 A A A . n A 1 7 A 7 54 54 A A A . n A 1 8 C 8 55 55 C C A . n A 1 9 U 9 56 56 U U A . n A 1 10 A 10 57 57 A A A . n A 1 11 C 11 58 58 C C A . n A 1 12 U 12 59 59 U U A . n A 1 13 G 13 60 60 G G A . n A 1 14 U 14 61 61 U U A . n A 1 15 C 15 62 62 C C A . n A 1 16 U 16 63 63 U U A . n A 1 17 U 17 64 64 U U A . n A 1 18 C 18 65 65 C C A . n A 1 19 C 19 66 66 C C A . n A 1 20 C 20 67 67 C C A . n B 2 1 G 1 101 101 G G B . n B 2 2 G 2 102 102 G G B . n B 2 3 U 3 103 103 U U B . n B 2 4 C 4 104 104 C C B . n B 2 5 G 5 105 105 G G B . n B 2 6 U 6 106 106 U U B . n B 2 7 G 7 107 107 G G B . n B 2 8 C 8 108 108 C C B . n B 2 9 A 9 109 109 A A B . n B 2 10 G 10 110 110 G G B . n B 2 11 C 11 111 111 C C B . n B 2 12 C 12 112 112 C C B . n B 2 13 U 13 113 113 U U B . n B 2 14 C 14 114 114 C C B . n B 2 15 G 15 115 115 G G B . n B 2 16 G 16 116 116 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 1 1 MG MG A . D 3 MG 1 68 1 MG MG A . E 3 MG 1 69 1 MG MG A . F 3 MG 1 70 1 MG MG A . G 3 MG 1 71 1 MG MG A . H 4 SO4 1 72 1 SO4 SO4 A . I 4 SO4 1 73 1 SO4 SO4 A . J 4 SO4 1 74 1 SO4 SO4 A . K 5 SS0 1 75 1 SS0 SS0 A . L 3 MG 1 1 1 MG MG B . M 6 HOH 1 2 2 HOH HOH A . M 6 HOH 2 4 4 HOH HOH A . M 6 HOH 3 5 5 HOH HOH A . M 6 HOH 4 8 8 HOH HOH A . M 6 HOH 5 10 10 HOH HOH A . M 6 HOH 6 12 12 HOH HOH A . M 6 HOH 7 15 15 HOH HOH A . M 6 HOH 8 16 16 HOH HOH A . M 6 HOH 9 18 18 HOH HOH A . M 6 HOH 10 19 19 HOH HOH A . M 6 HOH 11 20 20 HOH HOH A . M 6 HOH 12 26 26 HOH HOH A . M 6 HOH 13 27 27 HOH HOH A . M 6 HOH 14 28 28 HOH HOH A . M 6 HOH 15 30 30 HOH HOH A . M 6 HOH 16 31 31 HOH HOH A . M 6 HOH 17 32 32 HOH HOH A . M 6 HOH 18 35 35 HOH HOH A . M 6 HOH 19 40 40 HOH HOH A . M 6 HOH 20 41 41 HOH HOH A . M 6 HOH 21 43 43 HOH HOH A . M 6 HOH 22 44 44 HOH HOH A . M 6 HOH 23 46 46 HOH HOH A . M 6 HOH 24 47 47 HOH HOH A . M 6 HOH 25 76 76 HOH HOH A . M 6 HOH 26 77 77 HOH HOH A . M 6 HOH 27 78 78 HOH HOH A . M 6 HOH 28 79 48 HOH HOH A . M 6 HOH 29 80 80 HOH HOH A . M 6 HOH 30 81 50 HOH HOH A . M 6 HOH 31 82 51 HOH HOH A . M 6 HOH 32 83 52 HOH HOH A . M 6 HOH 33 84 54 HOH HOH A . M 6 HOH 34 85 55 HOH HOH A . M 6 HOH 35 86 57 HOH HOH A . M 6 HOH 36 87 61 HOH HOH A . M 6 HOH 37 88 63 HOH HOH A . M 6 HOH 38 89 64 HOH HOH A . M 6 HOH 39 90 65 HOH HOH A . M 6 HOH 40 91 68 HOH HOH A . M 6 HOH 41 92 72 HOH HOH A . M 6 HOH 42 93 75 HOH HOH A . M 6 HOH 43 94 53 HOH HOH A . N 6 HOH 1 3 3 HOH HOH B . N 6 HOH 2 6 6 HOH HOH B . N 6 HOH 3 7 7 HOH HOH B . N 6 HOH 4 9 9 HOH HOH B . N 6 HOH 5 11 11 HOH HOH B . N 6 HOH 6 13 13 HOH HOH B . N 6 HOH 7 14 14 HOH HOH B . N 6 HOH 8 17 17 HOH HOH B . N 6 HOH 9 21 21 HOH HOH B . N 6 HOH 10 22 22 HOH HOH B . N 6 HOH 11 23 23 HOH HOH B . N 6 HOH 12 24 24 HOH HOH B . N 6 HOH 13 25 25 HOH HOH B . N 6 HOH 14 29 29 HOH HOH B . N 6 HOH 15 33 33 HOH HOH B . N 6 HOH 16 34 34 HOH HOH B . N 6 HOH 17 36 36 HOH HOH B . N 6 HOH 18 37 37 HOH HOH B . N 6 HOH 19 38 38 HOH HOH B . N 6 HOH 20 39 39 HOH HOH B . N 6 HOH 21 42 42 HOH HOH B . N 6 HOH 22 45 45 HOH HOH B . N 6 HOH 23 49 49 HOH HOH B . N 6 HOH 24 56 56 HOH HOH B . N 6 HOH 25 58 58 HOH HOH B . N 6 HOH 26 59 59 HOH HOH B . N 6 HOH 27 60 60 HOH HOH B . N 6 HOH 28 62 62 HOH HOH B . N 6 HOH 29 66 66 HOH HOH B . N 6 HOH 30 67 67 HOH HOH B . N 6 HOH 31 69 69 HOH HOH B . N 6 HOH 32 70 70 HOH HOH B . N 6 HOH 33 71 71 HOH HOH B . N 6 HOH 34 73 73 HOH HOH B . N 6 HOH 35 74 74 HOH HOH B . N 6 HOH 36 79 79 HOH HOH B . N 6 HOH 37 81 81 HOH HOH B . N 6 HOH 38 117 1 HOH HOH B . # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, MAJOR GROOVE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3240 ? 1 MORE -100 ? 1 'SSA (A^2)' 6260 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 9 ? A U 56 ? 1_555 MG ? C MG . ? A MG 1 ? 1_555 O4 ? A U 12 ? A U 59 ? 1_555 110.6 ? 2 OP1 ? A U 9 ? A U 56 ? 1_555 MG ? C MG . ? A MG 1 ? 1_555 O ? M HOH . ? A HOH 80 ? 1_555 143.9 ? 3 O4 ? A U 12 ? A U 59 ? 1_555 MG ? C MG . ? A MG 1 ? 1_555 O ? M HOH . ? A HOH 80 ? 1_555 88.9 ? 4 O ? M HOH . ? A HOH 8 ? 1_555 MG ? L MG . ? B MG 1 ? 1_555 "O2'" ? B C 14 ? B C 114 ? 1_555 104.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 18 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 91 ? ? O B HOH 58 ? ? 1.90 2 1 O B HOH 58 ? ? O B HOH 66 ? ? 1.94 3 1 O3 A SO4 74 ? ? O A HOH 77 ? ? 1.96 4 1 O A HOH 91 ? ? O B HOH 24 ? ? 2.14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 SO4 S S N N 115 SO4 O1 O N N 116 SO4 O2 O N N 117 SO4 O3 O N N 118 SO4 O4 O N N 119 SS0 C C N N 120 SS0 N N N N 121 SS0 O O N N 122 SS0 C01 C Y N 123 SS0 N01 N Y N 124 SS0 C02 C Y N 125 SS0 N02 N Y N 126 SS0 C03 C Y N 127 SS0 N03 N N N 128 SS0 C04 C Y N 129 SS0 N04 N N N 130 SS0 C05 C Y N 131 SS0 C06 C Y N 132 SS0 C07 C Y N 133 SS0 C08 C N N 134 SS0 C09 C N R 135 SS0 C10 C N N 136 SS0 C11 C N N 137 SS0 C12 C N N 138 SS0 C13 C N N 139 SS0 C14 C N N 140 SS0 C15 C N N 141 SS0 C16 C N N 142 SS0 C17 C N N 143 SS0 H H N N 144 SS0 HA H N N 145 SS0 HB H N N 146 SS0 H02 H N N 147 SS0 H03 H N N 148 SS0 HN03 H N N 149 SS0 HN0A H N N 150 SS0 H08 H N N 151 SS0 H08A H N N 152 SS0 H09 H N N 153 SS0 H10 H N N 154 SS0 H10A H N N 155 SS0 H11 H N N 156 SS0 H11A H N N 157 SS0 H12 H N N 158 SS0 H12A H N N 159 SS0 H13 H N N 160 SS0 H13A H N N 161 SS0 H13B H N N 162 SS0 H14 H N N 163 SS0 H14A H N N 164 SS0 H14B H N N 165 SS0 H15 H N N 166 SS0 H15A H N N 167 SS0 H16 H N N 168 SS0 H16A H N N 169 SS0 H17 H N N 170 SS0 H17A H N N 171 SS0 H17B H N N 172 U OP3 O N N 173 U P P N N 174 U OP1 O N N 175 U OP2 O N N 176 U "O5'" O N N 177 U "C5'" C N N 178 U "C4'" C N R 179 U "O4'" O N N 180 U "C3'" C N S 181 U "O3'" O N N 182 U "C2'" C N R 183 U "O2'" O N N 184 U "C1'" C N R 185 U N1 N N N 186 U C2 C N N 187 U O2 O N N 188 U N3 N N N 189 U C4 C N N 190 U O4 O N N 191 U C5 C N N 192 U C6 C N N 193 U HOP3 H N N 194 U HOP2 H N N 195 U "H5'" H N N 196 U "H5''" H N N 197 U "H4'" H N N 198 U "H3'" H N N 199 U "HO3'" H N N 200 U "H2'" H N N 201 U "HO2'" H N N 202 U "H1'" H N N 203 U H3 H N N 204 U H5 H N N 205 U H6 H N N 206 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SO4 S O1 doub N N 118 SO4 S O2 doub N N 119 SO4 S O3 sing N N 120 SO4 S O4 sing N N 121 SS0 C N sing N N 122 SS0 N C16 sing N N 123 SS0 N C17 sing N N 124 SS0 O C01 sing N N 125 SS0 O C10 sing N N 126 SS0 C01 C02 doub Y N 127 SS0 C01 C06 sing Y N 128 SS0 N01 C04 sing Y N 129 SS0 N01 C07 doub Y N 130 SS0 C02 C03 sing Y N 131 SS0 N02 C05 sing Y N 132 SS0 N02 C07 sing Y N 133 SS0 N02 C12 sing N N 134 SS0 C03 C04 doub Y N 135 SS0 N03 C07 sing N N 136 SS0 C04 C05 sing Y N 137 SS0 N04 C11 sing N N 138 SS0 N04 C13 sing N N 139 SS0 N04 C14 sing N N 140 SS0 C05 C06 doub Y N 141 SS0 C06 C08 sing N N 142 SS0 C08 C09 sing N N 143 SS0 C09 C10 sing N N 144 SS0 C09 C11 sing N N 145 SS0 C12 C15 sing N N 146 SS0 C15 C16 sing N N 147 SS0 C H sing N N 148 SS0 C HA sing N N 149 SS0 C HB sing N N 150 SS0 C02 H02 sing N N 151 SS0 C03 H03 sing N N 152 SS0 N03 HN03 sing N N 153 SS0 N03 HN0A sing N N 154 SS0 C08 H08 sing N N 155 SS0 C08 H08A sing N N 156 SS0 C09 H09 sing N N 157 SS0 C10 H10 sing N N 158 SS0 C10 H10A sing N N 159 SS0 C11 H11 sing N N 160 SS0 C11 H11A sing N N 161 SS0 C12 H12 sing N N 162 SS0 C12 H12A sing N N 163 SS0 C13 H13 sing N N 164 SS0 C13 H13A sing N N 165 SS0 C13 H13B sing N N 166 SS0 C14 H14 sing N N 167 SS0 C14 H14A sing N N 168 SS0 C14 H14B sing N N 169 SS0 C15 H15 sing N N 170 SS0 C15 H15A sing N N 171 SS0 C16 H16 sing N N 172 SS0 C16 H16A sing N N 173 SS0 C17 H17 sing N N 174 SS0 C17 H17A sing N N 175 SS0 C17 H17B sing N N 176 U OP3 P sing N N 177 U OP3 HOP3 sing N N 178 U P OP1 doub N N 179 U P OP2 sing N N 180 U P "O5'" sing N N 181 U OP2 HOP2 sing N N 182 U "O5'" "C5'" sing N N 183 U "C5'" "C4'" sing N N 184 U "C5'" "H5'" sing N N 185 U "C5'" "H5''" sing N N 186 U "C4'" "O4'" sing N N 187 U "C4'" "C3'" sing N N 188 U "C4'" "H4'" sing N N 189 U "O4'" "C1'" sing N N 190 U "C3'" "O3'" sing N N 191 U "C3'" "C2'" sing N N 192 U "C3'" "H3'" sing N N 193 U "O3'" "HO3'" sing N N 194 U "C2'" "O2'" sing N N 195 U "C2'" "C1'" sing N N 196 U "C2'" "H2'" sing N N 197 U "O2'" "HO2'" sing N N 198 U "C1'" N1 sing N N 199 U "C1'" "H1'" sing N N 200 U N1 C2 sing N N 201 U N1 C6 sing N N 202 U C2 O2 doub N N 203 U C2 N3 sing N N 204 U N3 C4 sing N N 205 U N3 H3 sing N N 206 U C4 O4 doub N N 207 U C4 C5 sing N N 208 U C5 C6 doub N N 209 U C5 H5 sing N N 210 U C6 H6 sing N N 211 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3TZR 'double helix' 3TZR 'a-form double helix' 3TZR 'bulge loop' 3TZR 'mismatched base pair' 3TZR 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 15 1_555 0.310 -0.154 0.008 3.205 -11.821 0.208 1 A_C48:G115_B A 48 ? B 115 ? 19 1 1 A G 2 1_555 B C 14 1_555 -0.329 -0.217 0.288 -4.688 -17.995 -1.841 2 A_G49:C114_B A 49 ? B 114 ? 19 1 1 A A 3 1_555 B U 13 1_555 0.013 -0.006 0.512 5.198 -15.141 1.291 3 A_A50:U113_B A 50 ? B 113 ? 20 1 1 A G 4 1_555 B C 12 1_555 -0.206 -0.137 -0.047 -7.282 -17.720 -0.069 4 A_G51:C112_B A 51 ? B 112 ? 19 1 1 A G 5 1_555 B C 11 1_555 -0.001 -0.084 -0.094 -14.551 -17.571 -4.293 5 A_G52:C111_B A 52 ? B 111 ? 19 1 1 A C 11 1_555 B G 10 1_555 -0.012 -0.255 0.267 3.748 -21.551 -1.423 6 A_C58:G110_B A 58 ? B 110 ? 19 1 1 A U 12 1_555 B A 9 1_555 0.084 -0.018 0.190 -6.197 -13.247 2.770 7 A_U59:A109_B A 59 ? B 109 ? 20 1 1 A G 13 1_555 B C 8 1_555 -0.249 -0.165 0.095 0.585 -11.893 4.603 8 A_G60:C108_B A 60 ? B 108 ? 19 1 1 A U 14 1_555 B G 7 1_555 2.377 -0.343 0.194 1.880 -13.611 4.982 9 A_U61:G107_B A 61 ? B 107 ? 28 1 1 A C 15 1_555 B G 5 1_555 0.450 -0.067 -0.280 6.168 -5.264 0.467 10 A_C62:G105_B A 62 ? B 105 ? 19 1 1 A U 16 1_555 B C 4 1_555 -0.455 -1.570 0.090 11.871 -31.883 16.510 11 A_U63:C104_B A 63 ? B 104 ? 18 1 1 A U 17 1_555 B U 3 1_555 -2.435 -1.992 0.486 1.733 -13.549 9.267 12 A_U64:U103_B A 64 ? B 103 ? 16 1 1 A C 18 1_555 B G 2 1_555 0.122 -0.275 -0.196 7.223 -14.724 0.485 13 A_C65:G102_B A 65 ? B 102 ? 19 1 1 A C 19 1_555 B G 1 1_555 0.131 -0.131 -0.162 5.779 -8.925 0.031 14 A_C66:G101_B A 66 ? B 101 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 15 1_555 A G 2 1_555 B C 14 1_555 0.181 -1.604 3.325 0.124 10.048 31.233 -4.475 -0.300 2.694 18.085 -0.222 32.771 1 AA_C48G49:C114G115_BB A 48 ? B 115 ? A 49 ? B 114 ? 1 A G 2 1_555 B C 14 1_555 A A 3 1_555 B U 13 1_555 0.169 -1.075 3.017 -0.819 -3.954 34.106 -1.238 -0.407 3.113 -6.712 1.390 34.337 2 AA_G49A50:U113C114_BB A 49 ? B 114 ? A 50 ? B 113 ? 1 A A 3 1_555 B U 13 1_555 A G 4 1_555 B C 12 1_555 0.042 -1.328 3.541 4.021 5.651 33.601 -3.185 0.592 3.264 9.647 -6.865 34.289 3 AA_A50G51:C112U113_BB A 50 ? B 113 ? A 51 ? B 112 ? 1 A G 4 1_555 B C 12 1_555 A G 5 1_555 B C 11 1_555 0.277 -1.449 3.419 1.781 6.306 36.018 -3.184 -0.194 3.139 10.094 -2.852 36.590 4 AA_G51G52:C111C112_BB A 51 ? B 112 ? A 52 ? B 111 ? 1 A G 5 1_555 B C 11 1_555 A C 11 1_555 B G 10 1_555 -6.109 -1.168 3.845 1.396 -19.017 67.494 -0.196 5.397 3.905 -16.777 -1.232 69.827 5 AA_G52C58:G110C111_BB A 52 ? B 111 ? A 58 ? B 110 ? 1 A C 11 1_555 B G 10 1_555 A U 12 1_555 B A 9 1_555 -0.261 -1.526 3.343 0.607 9.802 34.584 -3.821 0.507 2.815 16.091 -0.997 35.911 6 AA_C58U59:A109G110_BB A 58 ? B 110 ? A 59 ? B 109 ? 1 A U 12 1_555 B A 9 1_555 A G 13 1_555 B C 8 1_555 0.529 -1.805 3.012 -0.014 8.691 24.492 -6.002 -1.182 2.249 19.710 0.033 25.966 7 AA_U59G60:C108A109_BB A 59 ? B 109 ? A 60 ? B 108 ? 1 A G 13 1_555 B C 8 1_555 A U 14 1_555 B G 7 1_555 0.444 -1.584 3.323 -0.171 0.834 42.511 -2.270 -0.630 3.291 1.150 0.236 42.519 8 AA_G60U61:G107C108_BB A 60 ? B 108 ? A 61 ? B 107 ? 1 A U 14 1_555 B G 7 1_555 A C 15 1_555 B G 5 1_555 -0.730 -1.970 3.051 2.745 3.690 24.775 -5.466 2.378 2.639 8.507 -6.327 25.192 9 AA_U61C62:G105G107_BB A 61 ? B 107 ? A 62 ? B 105 ? 1 A C 15 1_555 B G 5 1_555 A U 16 1_555 B C 4 1_555 0.543 -0.756 3.092 -5.501 16.294 26.181 -4.097 -1.918 2.119 31.957 10.789 31.241 10 AA_C62U63:C104G105_BB A 62 ? B 105 ? A 63 ? B 104 ? 1 A U 16 1_555 B C 4 1_555 A U 17 1_555 B U 3 1_555 -0.144 -1.279 3.250 -12.249 10.793 33.287 -3.396 -1.339 2.619 17.587 19.959 36.973 11 AA_U63U64:U103C104_BB A 63 ? B 104 ? A 64 ? B 103 ? 1 A U 17 1_555 B U 3 1_555 A C 18 1_555 B G 2 1_555 -0.651 -0.869 3.131 4.817 4.404 43.258 -1.560 1.304 2.948 5.934 -6.489 43.724 12 AA_U64C65:G102U103_BB A 64 ? B 103 ? A 65 ? B 102 ? 1 A C 18 1_555 B G 2 1_555 A C 19 1_555 B G 1 1_555 -0.394 -1.961 3.307 -1.071 9.116 30.060 -5.211 0.542 2.626 17.082 2.007 31.399 13 AA_C65C66:G101G102_BB A 65 ? B 102 ? A 66 ? B 101 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'SULFATE ION' SO4 5 '(8R)-8-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-1,7,8,9-tetrahydrochromeno[5,6-d]imidazol-2-amine' SS0 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NOK _pdbx_initial_refinement_model.details 'PDB ENTRY 2NOK' #