HEADER TRANSFERASE 28-SEP-11 3U0O TITLE THE CRYSTAL STRUCTURE OF SELENOPHOSPHATE SYNTHETASE FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SELENIDE, WATER DIKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SELENIUM DONOR PROTEIN, SELENOPHOSPHATE SYNTHASE; COMPND 5 EC: 2.7.9.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: SELD, FDHB, B1764, JW1753; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGP1-2 KEYWDS ATP BINDING PROTEIN, SELENOPHOSPHATE SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.NOINAJ,R.WATTANASAK,J.WALLY,T.STADTMAN,S.K.BUCHANAN REVDAT 2 13-SEP-23 3U0O 1 REMARK LINK REVDAT 1 14-MAR-12 3U0O 0 JRNL AUTH N.NOINAJ,R.WATTANASAK,D.Y.LEE,J.L.WALLY,G.PISZCZEK, JRNL AUTH 2 P.B.CHOCK,T.C.STADTMAN,S.K.BUCHANAN JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 ESCHERICHIA COLI SELENOPHOSPHATE SYNTHETASE. JRNL REF J.BACTERIOL. V. 194 499 2012 JRNL REFN ISSN 0021-9193 JRNL PMID 22081394 JRNL DOI 10.1128/JB.06012-11 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_865) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9855 - 5.5361 1.00 2771 129 0.2102 0.2362 REMARK 3 2 5.5361 - 4.3991 1.00 2651 145 0.1776 0.2392 REMARK 3 3 4.3991 - 3.8445 1.00 2621 140 0.1818 0.2128 REMARK 3 4 3.8445 - 3.4936 1.00 2585 162 0.2069 0.2352 REMARK 3 5 3.4936 - 3.2435 1.00 2591 148 0.2364 0.2749 REMARK 3 6 3.2435 - 3.0525 1.00 2569 126 0.2435 0.3384 REMARK 3 7 3.0525 - 2.8998 1.00 2573 154 0.2597 0.3427 REMARK 3 8 2.8998 - 2.7737 1.00 2596 120 0.2544 0.3728 REMARK 3 9 2.7737 - 2.6670 1.00 2564 153 0.2643 0.3128 REMARK 3 10 2.6670 - 2.5750 1.00 2564 144 0.2674 0.2988 REMARK 3 11 2.5750 - 2.4945 1.00 2566 122 0.2711 0.3001 REMARK 3 12 2.4945 - 2.4233 1.00 2571 124 0.2905 0.3502 REMARK 3 13 2.4233 - 2.3595 1.00 2594 131 0.3268 0.3273 REMARK 3 14 2.3595 - 2.3020 1.00 2561 127 0.3765 0.4049 REMARK 3 15 2.3020 - 2.2497 0.99 2548 130 0.4074 0.4160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 78.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.28650 REMARK 3 B22 (A**2) : 8.28650 REMARK 3 B33 (A**2) : -16.57290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4648 REMARK 3 ANGLE : 1.522 6337 REMARK 3 CHIRALITY : 0.094 752 REMARK 3 PLANARITY : 0.011 843 REMARK 3 DIHEDRAL : 16.272 1605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 29:147) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1437 32.9366 7.9637 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 1.1202 REMARK 3 T33: 0.4780 T12: 0.0096 REMARK 3 T13: -0.0068 T23: -0.1177 REMARK 3 L TENSOR REMARK 3 L11: 4.0540 L22: 8.9297 REMARK 3 L33: 2.3317 L12: -2.0880 REMARK 3 L13: -1.7267 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.2993 S13: -0.1098 REMARK 3 S21: 0.0355 S22: -0.2103 S23: 0.2163 REMARK 3 S31: 0.2427 S32: -0.3901 S33: 0.1015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 148:345) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0134 31.2403 22.5617 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 1.1494 REMARK 3 T33: 0.6806 T12: -0.0611 REMARK 3 T13: -0.0527 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.4770 L22: 1.3265 REMARK 3 L33: 2.7401 L12: -1.0592 REMARK 3 L13: 0.2623 L23: -0.3795 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.1932 S13: -0.4332 REMARK 3 S21: 0.0669 S22: 0.2778 S23: 0.4487 REMARK 3 S31: 0.3782 S32: -0.8476 S33: -0.2225 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 13:33) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2422 24.4050 0.8497 REMARK 3 T TENSOR REMARK 3 T11: 0.9390 T22: 1.6422 REMARK 3 T33: 0.8064 T12: -0.0770 REMARK 3 T13: 0.1521 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 8.2783 L22: 8.1382 REMARK 3 L33: 8.6261 L12: -0.2425 REMARK 3 L13: 7.8897 L23: 0.3853 REMARK 3 S TENSOR REMARK 3 S11: -0.5038 S12: 1.6421 S13: -0.3837 REMARK 3 S21: -1.1824 S22: -0.1532 S23: -1.1869 REMARK 3 S31: 0.8175 S32: 1.2061 S33: 0.1758 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 34:147) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3458 37.6459 7.9368 REMARK 3 T TENSOR REMARK 3 T11: 0.3201 T22: 0.9497 REMARK 3 T33: 0.4354 T12: -0.0008 REMARK 3 T13: 0.0289 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 2.7043 L22: 4.9342 REMARK 3 L33: 3.5759 L12: -1.8175 REMARK 3 L13: 0.0461 L23: -1.9256 REMARK 3 S TENSOR REMARK 3 S11: 0.2782 S12: 0.5766 S13: 0.2213 REMARK 3 S21: -0.3160 S22: -0.1995 S23: -0.2181 REMARK 3 S31: 0.2015 S32: 0.2638 S33: -0.1082 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 148:172) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6563 48.3147 -3.6877 REMARK 3 T TENSOR REMARK 3 T11: 0.5837 T22: 0.9287 REMARK 3 T33: 0.5284 T12: 0.0245 REMARK 3 T13: -0.0393 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 5.6240 L22: 2.5475 REMARK 3 L33: 0.8307 L12: 0.3448 REMARK 3 L13: -0.6924 L23: 1.2923 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.5335 S13: 0.9213 REMARK 3 S21: -0.8361 S22: 0.6476 S23: 0.5448 REMARK 3 S31: -0.4600 S32: -0.7599 S33: -0.4825 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 173:347) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3672 41.6587 -7.6161 REMARK 3 T TENSOR REMARK 3 T11: 0.5833 T22: 1.1781 REMARK 3 T33: 0.5866 T12: -0.1674 REMARK 3 T13: 0.0982 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 4.3802 L22: 4.2292 REMARK 3 L33: 6.3179 L12: 0.3100 REMARK 3 L13: 1.0982 L23: 1.4006 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: 0.1070 S13: 0.3598 REMARK 3 S21: -0.5926 S22: 0.2475 S23: -0.6803 REMARK 3 S31: -0.5402 S32: 2.0088 S33: -0.2433 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000068157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 32.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55500 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 50 MM MGCL2, 32% PEG REMARK 280 MME 550, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.77933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.88967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.88967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.77933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 ARG A 7 REMARK 465 LEU A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 TYR A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 CYS A 17 REMARK 465 GLY A 18 REMARK 465 CYS A 19 REMARK 465 LYS A 20 REMARK 465 ILE A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 LYS A 24 REMARK 465 VAL A 25 REMARK 465 LEU A 26 REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 SER B 5 REMARK 465 ILE B 6 REMARK 465 ARG B 7 REMARK 465 LEU B 8 REMARK 465 THR B 9 REMARK 465 GLN B 10 REMARK 465 TYR B 11 REMARK 465 SER B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 31 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 PHE A 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 46 CG OD1 ND2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 THR A 186 CG2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 LEU A 194 CG CD1 CD2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 LEU A 201 CG CD1 CD2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 VAL A 261 CG1 CG2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 TYR A 264 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 265 CG1 CG2 CD1 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 VAL A 270 CG1 CG2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ARG A 290 NE CZ NH1 NH2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 341 NE CZ NH1 NH2 REMARK 470 ILE A 346 CG1 CG2 CD1 REMARK 470 ARG A 347 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 ASN B 46 CG OD1 ND2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 ARG B 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ARG B 130 CD NE CZ NH1 NH2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 ASN B 165 CG OD1 ND2 REMARK 470 SER B 166 OG REMARK 470 THR B 167 OG1 CG2 REMARK 470 LYS B 173 CD CE NZ REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 SER B 192 OG REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 ASN B 218 CG OD1 ND2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 LEU B 267 CG CD1 CD2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 ILE B 326 CG1 CG2 CD1 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 470 ARG B 338 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 341 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 311 N ALA B 313 1.82 REMARK 500 O ALA B 313 N ASN B 315 2.01 REMARK 500 O GLU B 314 CG LYS B 318 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 40 C - N - CD ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 -73.84 -80.31 REMARK 500 HIS A 31 -1.89 64.66 REMARK 500 GLN A 34 111.44 41.68 REMARK 500 ALA A 35 179.81 134.22 REMARK 500 PHE A 37 -140.37 123.93 REMARK 500 VAL A 38 164.24 142.23 REMARK 500 PRO A 40 -155.83 -128.53 REMARK 500 ASN A 41 -176.33 -39.66 REMARK 500 LEU A 42 41.18 -86.89 REMARK 500 VAL A 44 -70.89 -97.40 REMARK 500 ASN A 46 159.95 160.44 REMARK 500 THR A 48 -86.86 -122.42 REMARK 500 ARG A 338 -66.40 -134.98 REMARK 500 GLU A 345 60.61 -68.71 REMARK 500 ILE A 346 -171.91 -45.25 REMARK 500 ALA B 15 31.53 -96.34 REMARK 500 LYS B 20 75.92 57.17 REMARK 500 LEU B 30 -113.18 79.67 REMARK 500 LYS B 36 -132.73 63.34 REMARK 500 VAL B 38 159.44 175.61 REMARK 500 ASN B 41 -152.34 63.48 REMARK 500 LEU B 42 -16.11 59.85 REMARK 500 THR B 48 -87.71 -124.68 REMARK 500 THR B 167 77.50 62.86 REMARK 500 SER B 192 -3.96 80.23 REMARK 500 PRO B 196 -156.27 -58.21 REMARK 500 GLU B 197 20.12 -61.56 REMARK 500 ALA B 244 -10.14 74.72 REMARK 500 GLU B 312 3.99 -39.20 REMARK 500 ALA B 313 -18.86 -142.89 REMARK 500 GLU B 314 -29.02 -27.30 REMARK 500 VAL B 317 -87.00 -42.06 REMARK 500 LYS B 318 -52.21 -13.63 REMARK 500 LEU B 328 158.07 178.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 45 ASN A 46 149.94 REMARK 500 THR A 48 ARG A 49 144.07 REMARK 500 SER B 22 PRO B 23 -32.95 REMARK 500 ILE B 29 LEU B 30 -129.78 REMARK 500 ASN B 41 LEU B 42 -141.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 91 OD1 88.0 REMARK 620 3 ASP A 227 OD1 87.6 106.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 91 OD1 REMARK 620 2 ASP B 227 OD1 109.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 DBREF 3U0O A 1 347 UNP P16456 SELD_ECOLI 1 347 DBREF 3U0O B 1 347 UNP P16456 SELD_ECOLI 1 347 SEQRES 1 A 347 MET SER GLU ASN SER ILE ARG LEU THR GLN TYR SER HIS SEQRES 2 A 347 GLY ALA GLY CYS GLY CYS LYS ILE SER PRO LYS VAL LEU SEQRES 3 A 347 GLU THR ILE LEU HIS SER GLU GLN ALA LYS PHE VAL ASP SEQRES 4 A 347 PRO ASN LEU LEU VAL GLY ASN GLU THR ARG ASP ASP ALA SEQRES 5 A 347 ALA VAL TYR ASP LEU GLY ASN GLY THR SER VAL ILE SER SEQRES 6 A 347 THR THR ASP PHE PHE MET PRO ILE VAL ASP ASN PRO PHE SEQRES 7 A 347 ASP PHE GLY ARG ILE ALA ALA THR ASN ALA ILE SER ASP SEQRES 8 A 347 ILE PHE ALA MET GLY GLY LYS PRO ILE MET ALA ILE ALA SEQRES 9 A 347 ILE LEU GLY TRP PRO ILE ASN LYS LEU SER PRO GLU ILE SEQRES 10 A 347 ALA ARG GLU VAL THR GLU GLY GLY ARG TYR ALA CYS ARG SEQRES 11 A 347 GLN ALA GLY ILE ALA LEU ALA GLY GLY HIS SER ILE ASP SEQRES 12 A 347 ALA PRO GLU PRO ILE PHE GLY LEU ALA VAL THR GLY ILE SEQRES 13 A 347 VAL PRO THR GLU ARG VAL LYS LYS ASN SER THR ALA GLN SEQRES 14 A 347 ALA GLY CYS LYS LEU PHE LEU THR LYS PRO LEU GLY ILE SEQRES 15 A 347 GLY VAL LEU THR THR ALA GLU LYS LYS SER LEU LEU LYS SEQRES 16 A 347 PRO GLU HIS GLN GLY LEU ALA THR GLU VAL MET CYS ARG SEQRES 17 A 347 MET ASN ILE ALA GLY ALA SER PHE ALA ASN ILE GLU GLY SEQRES 18 A 347 VAL LYS ALA MET THR ASP VAL THR GLY PHE GLY LEU LEU SEQRES 19 A 347 GLY HIS LEU SER GLU MET CYS GLN GLY ALA GLY VAL GLN SEQRES 20 A 347 ALA ARG VAL ASP TYR GLU ALA ILE PRO LYS LEU PRO GLY SEQRES 21 A 347 VAL GLU GLU TYR ILE LYS LEU GLY ALA VAL PRO GLY GLY SEQRES 22 A 347 THR GLU ARG ASN PHE ALA SER TYR GLY HIS LEU MET GLY SEQRES 23 A 347 GLU MET PRO ARG GLU VAL ARG ASP LEU LEU CYS ASP PRO SEQRES 24 A 347 GLN THR SER GLY GLY LEU LEU LEU ALA VAL MET PRO GLU SEQRES 25 A 347 ALA GLU ASN GLU VAL LYS ALA THR ALA ALA GLU PHE GLY SEQRES 26 A 347 ILE GLU LEU THR ALA ILE GLY GLU LEU VAL PRO ALA ARG SEQRES 27 A 347 GLY GLY ARG ALA MET VAL GLU ILE ARG SEQRES 1 B 347 MET SER GLU ASN SER ILE ARG LEU THR GLN TYR SER HIS SEQRES 2 B 347 GLY ALA GLY CYS GLY CYS LYS ILE SER PRO LYS VAL LEU SEQRES 3 B 347 GLU THR ILE LEU HIS SER GLU GLN ALA LYS PHE VAL ASP SEQRES 4 B 347 PRO ASN LEU LEU VAL GLY ASN GLU THR ARG ASP ASP ALA SEQRES 5 B 347 ALA VAL TYR ASP LEU GLY ASN GLY THR SER VAL ILE SER SEQRES 6 B 347 THR THR ASP PHE PHE MET PRO ILE VAL ASP ASN PRO PHE SEQRES 7 B 347 ASP PHE GLY ARG ILE ALA ALA THR ASN ALA ILE SER ASP SEQRES 8 B 347 ILE PHE ALA MET GLY GLY LYS PRO ILE MET ALA ILE ALA SEQRES 9 B 347 ILE LEU GLY TRP PRO ILE ASN LYS LEU SER PRO GLU ILE SEQRES 10 B 347 ALA ARG GLU VAL THR GLU GLY GLY ARG TYR ALA CYS ARG SEQRES 11 B 347 GLN ALA GLY ILE ALA LEU ALA GLY GLY HIS SER ILE ASP SEQRES 12 B 347 ALA PRO GLU PRO ILE PHE GLY LEU ALA VAL THR GLY ILE SEQRES 13 B 347 VAL PRO THR GLU ARG VAL LYS LYS ASN SER THR ALA GLN SEQRES 14 B 347 ALA GLY CYS LYS LEU PHE LEU THR LYS PRO LEU GLY ILE SEQRES 15 B 347 GLY VAL LEU THR THR ALA GLU LYS LYS SER LEU LEU LYS SEQRES 16 B 347 PRO GLU HIS GLN GLY LEU ALA THR GLU VAL MET CYS ARG SEQRES 17 B 347 MET ASN ILE ALA GLY ALA SER PHE ALA ASN ILE GLU GLY SEQRES 18 B 347 VAL LYS ALA MET THR ASP VAL THR GLY PHE GLY LEU LEU SEQRES 19 B 347 GLY HIS LEU SER GLU MET CYS GLN GLY ALA GLY VAL GLN SEQRES 20 B 347 ALA ARG VAL ASP TYR GLU ALA ILE PRO LYS LEU PRO GLY SEQRES 21 B 347 VAL GLU GLU TYR ILE LYS LEU GLY ALA VAL PRO GLY GLY SEQRES 22 B 347 THR GLU ARG ASN PHE ALA SER TYR GLY HIS LEU MET GLY SEQRES 23 B 347 GLU MET PRO ARG GLU VAL ARG ASP LEU LEU CYS ASP PRO SEQRES 24 B 347 GLN THR SER GLY GLY LEU LEU LEU ALA VAL MET PRO GLU SEQRES 25 B 347 ALA GLU ASN GLU VAL LYS ALA THR ALA ALA GLU PHE GLY SEQRES 26 B 347 ILE GLU LEU THR ALA ILE GLY GLU LEU VAL PRO ALA ARG SEQRES 27 B 347 GLY GLY ARG ALA MET VAL GLU ILE ARG HET MG A 401 1 HET MG B 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *52(H2 O) HELIX 1 1 ASN A 76 MET A 95 1 20 HELIX 2 2 SER A 114 ALA A 132 1 19 HELIX 3 3 GLU A 160 VAL A 162 5 3 HELIX 4 4 GLY A 181 LYS A 191 1 11 HELIX 5 5 LYS A 195 GLN A 199 5 5 HELIX 6 6 GLY A 200 ARG A 208 1 9 HELIX 7 7 ILE A 211 ALA A 217 1 7 HELIX 8 8 PHE A 231 GLY A 245 1 15 HELIX 9 9 GLY A 260 LYS A 266 1 7 HELIX 10 10 PRO A 271 GLY A 282 1 12 HELIX 11 11 HIS A 283 MET A 285 5 3 HELIX 12 12 PRO A 289 CYS A 297 1 9 HELIX 13 13 MET A 310 PHE A 324 1 15 HELIX 14 14 LEU B 30 LYS B 36 5 7 HELIX 15 15 ASN B 76 MET B 95 1 20 HELIX 16 16 SER B 114 ALA B 132 1 19 HELIX 17 17 THR B 159 LYS B 164 1 6 HELIX 18 18 GLY B 181 GLU B 189 1 9 HELIX 19 19 GLY B 200 CYS B 207 1 8 HELIX 20 20 ALA B 212 ALA B 217 1 6 HELIX 21 21 PHE B 231 GLY B 243 1 13 HELIX 22 22 GLY B 260 LEU B 267 1 8 HELIX 23 23 PRO B 271 GLY B 282 1 12 HELIX 24 24 HIS B 283 MET B 285 5 3 HELIX 25 25 PRO B 289 CYS B 297 1 9 HELIX 26 26 ALA B 313 PHE B 324 1 12 SHEET 1 A 5 ALA A 53 ASP A 56 0 SHEET 2 A 5 THR A 61 PHE A 70 -1 O VAL A 63 N TYR A 55 SHEET 3 A 5 ILE A 148 PRO A 158 -1 O VAL A 157 N SER A 62 SHEET 4 A 5 LYS A 98 TRP A 108 -1 N ILE A 100 O THR A 154 SHEET 5 A 5 LEU A 136 ASP A 143 1 O ALA A 137 N ALA A 102 SHEET 1 B 6 VAL A 222 ASP A 227 0 SHEET 2 B 6 LEU A 305 VAL A 309 -1 O LEU A 306 N THR A 226 SHEET 3 B 6 LYS A 173 LEU A 176 -1 N LYS A 173 O VAL A 309 SHEET 4 B 6 GLY A 332 PRO A 336 -1 O GLY A 332 N LEU A 174 SHEET 5 B 6 VAL A 246 ASP A 251 -1 N GLN A 247 O VAL A 335 SHEET 6 B 6 ALA A 342 GLU A 345 1 O GLU A 345 N VAL A 250 SHEET 1 C 5 ALA B 53 ASP B 56 0 SHEET 2 C 5 THR B 61 PHE B 70 -1 O SER B 65 N ALA B 53 SHEET 3 C 5 ILE B 148 PRO B 158 -1 O VAL B 153 N THR B 66 SHEET 4 C 5 LYS B 98 TRP B 108 -1 N MET B 101 O THR B 154 SHEET 5 C 5 LEU B 136 ASP B 143 1 O GLY B 138 N ALA B 104 SHEET 1 D 6 VAL B 222 ASP B 227 0 SHEET 2 D 6 LEU B 305 VAL B 309 -1 O LEU B 306 N THR B 226 SHEET 3 D 6 LYS B 173 LEU B 176 -1 N LYS B 173 O VAL B 309 SHEET 4 D 6 THR B 329 PRO B 336 -1 O GLY B 332 N LEU B 174 SHEET 5 D 6 VAL B 246 VAL B 250 -1 N GLN B 247 O VAL B 335 SHEET 6 D 6 VAL B 344 ILE B 346 1 O GLU B 345 N ALA B 248 LINK OD1 ASP A 51 MG MG A 401 1555 1555 1.97 LINK OD1 ASP A 91 MG MG A 401 1555 1555 2.04 LINK OD1 ASP A 227 MG MG A 401 1555 1555 1.99 LINK OD1 ASP B 91 MG MG B 401 1555 1555 2.03 LINK OD1 ASP B 227 MG MG B 401 1555 1555 2.04 CISPEP 1 GLN A 34 ALA A 35 0 -7.21 CISPEP 2 ASN A 41 LEU A 42 0 0.27 CISPEP 3 ASN A 46 GLU A 47 0 -11.12 CISPEP 4 GLY A 268 ALA A 269 0 5.84 CISPEP 5 GLY B 18 CYS B 19 0 -23.00 CISPEP 6 SER B 166 THR B 167 0 23.46 CISPEP 7 GLU B 327 LEU B 328 0 -16.07 SITE 1 AC1 3 ASP A 51 ASP A 91 ASP A 227 SITE 1 AC2 3 ASP B 91 ASP B 227 THR B 229 CRYST1 102.347 102.347 140.669 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009771 0.005641 0.000000 0.00000 SCALE2 0.000000 0.011282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007109 0.00000