data_3U2A # _entry.id 3U2A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U2A RCSB RCSB068215 WWPDB D_1000068215 # _pdbx_database_status.entry_id 3U2A _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-02 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rood, K.' 1 'Clark, N.E.' 2 'Garman, S.C.' 3 'Chien, P.' 4 # _citation.id primary _citation.title 'Adaptor-dependent degradation of a cell-cycle regulator uses a unique substrate architecture.' _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 1223 _citation.page_last 1232 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22682744 _citation.pdbx_database_id_DOI 10.1016/j.str.2012.04.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rood, K.L.' 1 primary 'Clark, N.E.' 2 primary 'Stoddard, P.R.' 3 primary 'Garman, S.C.' 4 primary 'Chien, P.' 5 # _cell.entry_id 3U2A _cell.length_a 63.799 _cell.length_b 41.895 _cell.length_c 48.659 _cell.angle_alpha 90.00 _cell.angle_beta 107.52 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U2A _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GGDEF family protein' 13978.765 1 3.1.4.52 ? 'unp residues 2-130' ? 2 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SFRTGERRIWDATATLEALGAADVALWIWEPETDRLRLNGAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLKPREP GSEVVARFRVRGGET(CSO)LWRGVWLEEGVRAAGVVAPETKFSASELCDLTG ; _entity_poly.pdbx_seq_one_letter_code_can ;SFRTGERRIWDATATLEALGAADVALWIWEPETDRLRLNGAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLKPREP GSEVVARFRVRGGETCLWRGVWLEEGVRAAGVVAPETKFSASELCDLTG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PHE n 1 3 ARG n 1 4 THR n 1 5 GLY n 1 6 GLU n 1 7 ARG n 1 8 ARG n 1 9 ILE n 1 10 TRP n 1 11 ASP n 1 12 ALA n 1 13 THR n 1 14 ALA n 1 15 THR n 1 16 LEU n 1 17 GLU n 1 18 ALA n 1 19 LEU n 1 20 GLY n 1 21 ALA n 1 22 ALA n 1 23 ASP n 1 24 VAL n 1 25 ALA n 1 26 LEU n 1 27 TRP n 1 28 ILE n 1 29 TRP n 1 30 GLU n 1 31 PRO n 1 32 GLU n 1 33 THR n 1 34 ASP n 1 35 ARG n 1 36 LEU n 1 37 ARG n 1 38 LEU n 1 39 ASN n 1 40 GLY n 1 41 ALA n 1 42 ALA n 1 43 ARG n 1 44 ALA n 1 45 LEU n 1 46 GLY n 1 47 LEU n 1 48 GLY n 1 49 PRO n 1 50 LEU n 1 51 ALA n 1 52 PRO n 1 53 GLU n 1 54 CYS n 1 55 SER n 1 56 SER n 1 57 ALA n 1 58 ALA n 1 59 PHE n 1 60 ARG n 1 61 ALA n 1 62 LEU n 1 63 ALA n 1 64 LEU n 1 65 PRO n 1 66 GLN n 1 67 ASP n 1 68 ARG n 1 69 ALA n 1 70 GLN n 1 71 ALA n 1 72 GLU n 1 73 GLU n 1 74 VAL n 1 75 LEU n 1 76 LYS n 1 77 PRO n 1 78 ARG n 1 79 GLU n 1 80 PRO n 1 81 GLY n 1 82 SER n 1 83 GLU n 1 84 VAL n 1 85 VAL n 1 86 ALA n 1 87 ARG n 1 88 PHE n 1 89 ARG n 1 90 VAL n 1 91 ARG n 1 92 GLY n 1 93 GLY n 1 94 GLU n 1 95 THR n 1 96 CSO n 1 97 LEU n 1 98 TRP n 1 99 ARG n 1 100 GLY n 1 101 VAL n 1 102 TRP n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 GLY n 1 107 VAL n 1 108 ARG n 1 109 ALA n 1 110 ALA n 1 111 GLY n 1 112 VAL n 1 113 VAL n 1 114 ALA n 1 115 PRO n 1 116 GLU n 1 117 THR n 1 118 LYS n 1 119 PHE n 1 120 SER n 1 121 ALA n 1 122 SER n 1 123 GLU n 1 124 LEU n 1 125 CYS n 1 126 ASP n 1 127 LEU n 1 128 THR n 1 129 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CC3396(PdeA), CC_3396' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain NA1000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter vibrioides' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 155892 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET23 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9A310_CAUCR _struct_ref.pdbx_db_accession Q9A310 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SFRTGERRIWDATATLEALGAADVALWIWEPETDRLRLNGAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLKPREP GSEVVARFRVRGGETCLWRGVWLEEGVRAAGVVAPETKFSASELCDLTG ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U2A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9A310 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 130 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U2A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M Sodium Acetate, 8% (w/v) PEG 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2011-01-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Osmic Blue' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type OTHER _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U2A _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 11481 _reflns.number_all ? _reflns.percent_possible_obs 84.100 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.700 1.760 30.900 0.271 ? ? 4.200 ? ? ? ? ? ? 1 2 1.760 1.830 55.100 0.280 ? ? 5.500 ? ? ? ? ? ? 1 3 1.830 1.910 87.600 0.218 ? ? 6.600 ? ? ? ? ? ? 1 4 1.910 2.020 92.500 0.156 ? ? 7.000 ? ? ? ? ? ? 1 5 2.020 2.140 93.300 0.112 ? ? 7.000 ? ? ? ? ? ? 1 6 2.140 2.310 94.000 0.086 ? ? 7.000 ? ? ? ? ? ? 1 7 2.310 2.540 95.400 0.067 ? ? 7.000 ? ? ? ? ? ? 1 8 2.540 2.910 95.800 0.050 ? ? 7.000 ? ? ? ? ? ? 1 9 2.910 3.660 97.200 0.035 ? ? 7.000 ? ? ? ? ? ? 1 10 3.660 50.000 98.400 0.030 ? ? 6.800 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U2A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10920 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.40 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 84.18 _refine.ls_R_factor_obs 0.16930 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16744 _refine.ls_R_factor_R_free 0.20617 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 561 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 23.237 _refine.aniso_B[1][1] 0.17 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] -0.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.02 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.120 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.066 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.570 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 852 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 1006 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 46.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 907 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.238 1.959 ? 1244 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 11.728 5.163 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 28.851 21.500 ? 40 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.440 15.000 ? 140 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.493 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 139 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 708 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.967 6.000 ? 574 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.295 8.000 ? 918 'X-RAY DIFFRACTION' ? r_scbond_it 4.108 8.000 ? 333 'X-RAY DIFFRACTION' ? r_scangle_it 6.542 12.000 ? 322 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 274 _refine_ls_shell.R_factor_R_work 0.509 _refine_ls_shell.percent_reflns_obs 28.16 _refine_ls_shell.R_factor_R_free 0.625 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3U2A _struct.title 'Adaptor dependent degradation of a cell-cycle regulator reveals diversity in substrate architectures' _struct.pdbx_descriptor 'GGDEF family protein (E.C.3.1.4.52)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U2A _struct_keywords.text 'phosphodiesterase, proteolysis, cell-cycle, ClpXP, cyclic di-GMP, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 11 ? ASP A 23 ? ASP A 12 ASP A 24 1 ? 13 HELX_P HELX_P2 2 LEU A 47 ? ALA A 51 ? LEU A 48 ALA A 52 5 ? 5 HELX_P HELX_P3 3 SER A 55 ? ALA A 63 ? SER A 56 ALA A 64 1 ? 9 HELX_P HELX_P4 4 LEU A 64 ? GLN A 66 ? LEU A 65 GLN A 67 5 ? 3 HELX_P HELX_P5 5 ASP A 67 ? LYS A 76 ? ASP A 68 LYS A 77 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 95 C ? ? ? 1_555 A CSO 96 N ? ? A THR 96 A CSO 97 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A CSO 96 C ? ? ? 1_555 A LEU 97 N ? ? A CSO 97 A LEU 98 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 51 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 52 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 52 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 53 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.22 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 53 ? CYS A 54 ? GLU A 54 CYS A 55 A 2 ARG A 35 ? GLY A 40 ? ARG A 36 GLY A 41 A 3 ALA A 25 ? GLU A 30 ? ALA A 26 GLU A 31 A 4 ALA A 109 ? PRO A 115 ? ALA A 110 PRO A 116 A 5 THR A 95 ? TRP A 102 ? THR A 96 TRP A 103 A 6 GLU A 83 ? ARG A 89 ? GLU A 84 ARG A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 54 ? O CYS A 55 N LEU A 36 ? N LEU A 37 A 2 3 O ASN A 39 ? O ASN A 40 N LEU A 26 ? N LEU A 27 A 3 4 N TRP A 29 ? N TRP A 30 O ALA A 109 ? O ALA A 110 A 4 5 O VAL A 112 ? O VAL A 113 N ARG A 99 ? N ARG A 100 A 5 6 O TRP A 98 ? O TRP A 99 N ALA A 86 ? N ALA A 87 # _atom_sites.entry_id 3U2A _atom_sites.fract_transf_matrix[1][1] 0.015674 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004948 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023869 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 ? ? ? A . n A 1 2 PHE 2 3 ? ? ? A . n A 1 3 ARG 3 4 ? ? ? A . n A 1 4 THR 4 5 ? ? ? A . n A 1 5 GLY 5 6 ? ? ? A . n A 1 6 GLU 6 7 ? ? ? A . n A 1 7 ARG 7 8 ? ? ? A . n A 1 8 ARG 8 9 ? ? ? A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 TRP 10 11 11 TRP TRP A . n A 1 11 ASP 11 12 12 ASP ASP A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 THR 13 14 14 THR THR A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 THR 15 16 16 THR THR A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 GLU 17 18 18 GLU GLU A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 ALA 21 22 22 ALA ALA A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 ASP 23 24 24 ASP ASP A . n A 1 24 VAL 24 25 25 VAL VAL A . n A 1 25 ALA 25 26 26 ALA ALA A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 TRP 27 28 28 TRP TRP A . n A 1 28 ILE 28 29 29 ILE ILE A . n A 1 29 TRP 29 30 30 TRP TRP A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 PRO 31 32 32 PRO PRO A . n A 1 32 GLU 32 33 33 GLU GLU A . n A 1 33 THR 33 34 34 THR THR A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 ARG 35 36 36 ARG ARG A . n A 1 36 LEU 36 37 37 LEU LEU A . n A 1 37 ARG 37 38 38 ARG ARG A . n A 1 38 LEU 38 39 39 LEU LEU A . n A 1 39 ASN 39 40 40 ASN ASN A . n A 1 40 GLY 40 41 41 GLY GLY A . n A 1 41 ALA 41 42 42 ALA ALA A . n A 1 42 ALA 42 43 43 ALA ALA A . n A 1 43 ARG 43 44 44 ARG ARG A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 LEU 47 48 48 LEU LEU A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 PRO 49 50 50 PRO PRO A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 ALA 51 52 52 ALA ALA A . n A 1 52 PRO 52 53 53 PRO PRO A . n A 1 53 GLU 53 54 54 GLU GLU A . n A 1 54 CYS 54 55 55 CYS CYS A . n A 1 55 SER 55 56 56 SER SER A . n A 1 56 SER 56 57 57 SER SER A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 ALA 58 59 59 ALA ALA A . n A 1 59 PHE 59 60 60 PHE PHE A . n A 1 60 ARG 60 61 61 ARG ARG A . n A 1 61 ALA 61 62 62 ALA ALA A . n A 1 62 LEU 62 63 63 LEU LEU A . n A 1 63 ALA 63 64 64 ALA ALA A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 PRO 65 66 66 PRO PRO A . n A 1 66 GLN 66 67 67 GLN GLN A . n A 1 67 ASP 67 68 68 ASP ASP A . n A 1 68 ARG 68 69 69 ARG ARG A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 GLN 70 71 71 GLN GLN A . n A 1 71 ALA 71 72 72 ALA ALA A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 GLU 73 74 74 GLU GLU A . n A 1 74 VAL 74 75 75 VAL VAL A . n A 1 75 LEU 75 76 76 LEU LEU A . n A 1 76 LYS 76 77 77 LYS LYS A . n A 1 77 PRO 77 78 78 PRO PRO A . n A 1 78 ARG 78 79 79 ARG ARG A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 PRO 80 81 81 PRO PRO A . n A 1 81 GLY 81 82 82 GLY GLY A . n A 1 82 SER 82 83 83 SER SER A . n A 1 83 GLU 83 84 84 GLU GLU A . n A 1 84 VAL 84 85 85 VAL VAL A . n A 1 85 VAL 85 86 86 VAL VAL A . n A 1 86 ALA 86 87 87 ALA ALA A . n A 1 87 ARG 87 88 88 ARG ARG A . n A 1 88 PHE 88 89 89 PHE PHE A . n A 1 89 ARG 89 90 90 ARG ARG A . n A 1 90 VAL 90 91 91 VAL VAL A . n A 1 91 ARG 91 92 92 ARG ARG A . n A 1 92 GLY 92 93 93 GLY GLY A . n A 1 93 GLY 93 94 94 GLY GLY A . n A 1 94 GLU 94 95 95 GLU GLU A . n A 1 95 THR 95 96 96 THR THR A . n A 1 96 CSO 96 97 97 CSO CSO A . n A 1 97 LEU 97 98 98 LEU LEU A . n A 1 98 TRP 98 99 99 TRP TRP A . n A 1 99 ARG 99 100 100 ARG ARG A . n A 1 100 GLY 100 101 101 GLY GLY A . n A 1 101 VAL 101 102 102 VAL VAL A . n A 1 102 TRP 102 103 103 TRP TRP A . n A 1 103 LEU 103 104 104 LEU LEU A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 GLY 106 107 107 GLY GLY A . n A 1 107 VAL 107 108 108 VAL VAL A . n A 1 108 ARG 108 109 109 ARG ARG A . n A 1 109 ALA 109 110 110 ALA ALA A . n A 1 110 ALA 110 111 111 ALA ALA A . n A 1 111 GLY 111 112 112 GLY GLY A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 VAL 113 114 114 VAL VAL A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 PRO 115 116 116 PRO PRO A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 THR 117 118 118 THR THR A . n A 1 118 LYS 118 119 119 LYS LYS A . n A 1 119 PHE 119 120 120 PHE PHE A . n A 1 120 SER 120 121 121 SER SER A . n A 1 121 ALA 121 122 ? ? ? A . n A 1 122 SER 122 123 ? ? ? A . n A 1 123 GLU 123 124 ? ? ? A . n A 1 124 LEU 124 125 ? ? ? A . n A 1 125 CYS 125 126 ? ? ? A . n A 1 126 ASP 126 127 ? ? ? A . n A 1 127 LEU 127 128 ? ? ? A . n A 1 128 THR 128 129 ? ? ? A . n A 1 129 GLY 129 130 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 131 131 HOH HOH A . B 2 HOH 3 132 132 HOH HOH A . B 2 HOH 4 133 133 HOH HOH A . B 2 HOH 5 134 134 HOH HOH A . B 2 HOH 6 135 135 HOH HOH A . B 2 HOH 7 136 136 HOH HOH A . B 2 HOH 8 137 137 HOH HOH A . B 2 HOH 9 138 138 HOH HOH A . B 2 HOH 10 139 139 HOH HOH A . B 2 HOH 11 140 140 HOH HOH A . B 2 HOH 12 141 141 HOH HOH A . B 2 HOH 13 142 142 HOH HOH A . B 2 HOH 14 143 143 HOH HOH A . B 2 HOH 15 144 144 HOH HOH A . B 2 HOH 16 145 145 HOH HOH A . B 2 HOH 17 146 146 HOH HOH A . B 2 HOH 18 147 147 HOH HOH A . B 2 HOH 19 148 148 HOH HOH A . B 2 HOH 20 149 149 HOH HOH A . B 2 HOH 21 150 150 HOH HOH A . B 2 HOH 22 151 151 HOH HOH A . B 2 HOH 23 152 152 HOH HOH A . B 2 HOH 24 153 153 HOH HOH A . B 2 HOH 25 154 154 HOH HOH A . B 2 HOH 26 155 155 HOH HOH A . B 2 HOH 27 156 156 HOH HOH A . B 2 HOH 28 157 2 HOH HOH A . B 2 HOH 29 158 3 HOH HOH A . B 2 HOH 30 159 4 HOH HOH A . B 2 HOH 31 160 5 HOH HOH A . B 2 HOH 32 161 6 HOH HOH A . B 2 HOH 33 162 7 HOH HOH A . B 2 HOH 34 163 8 HOH HOH A . B 2 HOH 35 164 9 HOH HOH A . B 2 HOH 36 165 10 HOH HOH A . B 2 HOH 37 166 11 HOH HOH A . B 2 HOH 38 167 12 HOH HOH A . B 2 HOH 39 168 13 HOH HOH A . B 2 HOH 40 169 14 HOH HOH A . B 2 HOH 41 170 15 HOH HOH A . B 2 HOH 42 171 16 HOH HOH A . B 2 HOH 43 172 17 HOH HOH A . B 2 HOH 44 173 18 HOH HOH A . B 2 HOH 45 174 19 HOH HOH A . B 2 HOH 46 175 21 HOH HOH A . B 2 HOH 47 176 22 HOH HOH A . B 2 HOH 48 177 23 HOH HOH A . B 2 HOH 49 178 24 HOH HOH A . B 2 HOH 50 179 25 HOH HOH A . B 2 HOH 51 180 26 HOH HOH A . B 2 HOH 52 181 27 HOH HOH A . B 2 HOH 53 182 28 HOH HOH A . B 2 HOH 54 183 29 HOH HOH A . B 2 HOH 55 184 30 HOH HOH A . B 2 HOH 56 185 31 HOH HOH A . B 2 HOH 57 186 32 HOH HOH A . B 2 HOH 58 187 33 HOH HOH A . B 2 HOH 59 188 34 HOH HOH A . B 2 HOH 60 189 35 HOH HOH A . B 2 HOH 61 190 36 HOH HOH A . B 2 HOH 62 191 37 HOH HOH A . B 2 HOH 63 192 38 HOH HOH A . B 2 HOH 64 193 39 HOH HOH A . B 2 HOH 65 194 40 HOH HOH A . B 2 HOH 66 195 41 HOH HOH A . B 2 HOH 67 196 42 HOH HOH A . B 2 HOH 68 197 43 HOH HOH A . B 2 HOH 69 198 44 HOH HOH A . B 2 HOH 70 199 45 HOH HOH A . B 2 HOH 71 200 46 HOH HOH A . B 2 HOH 72 201 47 HOH HOH A . B 2 HOH 73 202 48 HOH HOH A . B 2 HOH 74 203 49 HOH HOH A . B 2 HOH 75 204 50 HOH HOH A . B 2 HOH 76 205 51 HOH HOH A . B 2 HOH 77 206 52 HOH HOH A . B 2 HOH 78 207 53 HOH HOH A . B 2 HOH 79 208 54 HOH HOH A . B 2 HOH 80 209 55 HOH HOH A . B 2 HOH 81 210 56 HOH HOH A . B 2 HOH 82 211 57 HOH HOH A . B 2 HOH 83 212 58 HOH HOH A . B 2 HOH 84 213 59 HOH HOH A . B 2 HOH 85 214 60 HOH HOH A . B 2 HOH 86 215 61 HOH HOH A . B 2 HOH 87 216 62 HOH HOH A . B 2 HOH 88 217 63 HOH HOH A . B 2 HOH 89 218 64 HOH HOH A . B 2 HOH 90 219 65 HOH HOH A . B 2 HOH 91 220 66 HOH HOH A . B 2 HOH 92 221 67 HOH HOH A . B 2 HOH 93 222 68 HOH HOH A . B 2 HOH 94 223 69 HOH HOH A . B 2 HOH 95 224 70 HOH HOH A . B 2 HOH 96 225 71 HOH HOH A . B 2 HOH 97 226 72 HOH HOH A . B 2 HOH 98 227 73 HOH HOH A . B 2 HOH 99 228 74 HOH HOH A . B 2 HOH 100 229 75 HOH HOH A . B 2 HOH 101 230 76 HOH HOH A . B 2 HOH 102 231 77 HOH HOH A . B 2 HOH 103 232 78 HOH HOH A . B 2 HOH 104 233 79 HOH HOH A . B 2 HOH 105 234 80 HOH HOH A . B 2 HOH 106 235 81 HOH HOH A . B 2 HOH 107 236 82 HOH HOH A . B 2 HOH 108 237 83 HOH HOH A . B 2 HOH 109 238 84 HOH HOH A . B 2 HOH 110 239 85 HOH HOH A . B 2 HOH 111 240 86 HOH HOH A . B 2 HOH 112 241 87 HOH HOH A . B 2 HOH 113 242 88 HOH HOH A . B 2 HOH 114 243 89 HOH HOH A . B 2 HOH 115 244 90 HOH HOH A . B 2 HOH 116 245 91 HOH HOH A . B 2 HOH 117 246 92 HOH HOH A . B 2 HOH 118 247 93 HOH HOH A . B 2 HOH 119 248 94 HOH HOH A . B 2 HOH 120 249 95 HOH HOH A . B 2 HOH 121 250 96 HOH HOH A . B 2 HOH 122 251 97 HOH HOH A . B 2 HOH 123 252 98 HOH HOH A . B 2 HOH 124 253 99 HOH HOH A . B 2 HOH 125 254 100 HOH HOH A . B 2 HOH 126 255 101 HOH HOH A . B 2 HOH 127 256 102 HOH HOH A . B 2 HOH 128 257 103 HOH HOH A . B 2 HOH 129 258 104 HOH HOH A . B 2 HOH 130 259 105 HOH HOH A . B 2 HOH 131 260 106 HOH HOH A . B 2 HOH 132 261 107 HOH HOH A . B 2 HOH 133 262 108 HOH HOH A . B 2 HOH 134 263 109 HOH HOH A . B 2 HOH 135 264 110 HOH HOH A . B 2 HOH 136 265 111 HOH HOH A . B 2 HOH 137 266 112 HOH HOH A . B 2 HOH 138 267 114 HOH HOH A . B 2 HOH 139 268 115 HOH HOH A . B 2 HOH 140 269 116 HOH HOH A . B 2 HOH 141 270 117 HOH HOH A . B 2 HOH 142 271 118 HOH HOH A . B 2 HOH 143 272 119 HOH HOH A . B 2 HOH 144 273 120 HOH HOH A . B 2 HOH 145 274 121 HOH HOH A . B 2 HOH 146 275 122 HOH HOH A . B 2 HOH 147 276 123 HOH HOH A . B 2 HOH 148 277 124 HOH HOH A . B 2 HOH 149 278 125 HOH HOH A . B 2 HOH 150 279 126 HOH HOH A . B 2 HOH 151 280 127 HOH HOH A . B 2 HOH 152 281 128 HOH HOH A . B 2 HOH 153 282 129 HOH HOH A . B 2 HOH 154 283 130 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSO _pdbx_struct_mod_residue.label_seq_id 96 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSO _pdbx_struct_mod_residue.auth_seq_id 97 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details S-HYDROXYCYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2410 ? 1 MORE -13 ? 1 'SSA (A^2)' 10070 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 34.5025166502 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 92.8036054652 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.type' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 12.6190 7.8230 50.5280 0.1385 0.1263 0.1315 -0.0263 -0.0040 0.0152 3.6546 2.5312 3.0962 -0.2790 -0.7116 0.6663 0.0065 -0.1062 -0.1791 0.0314 -0.0065 0.0900 0.3047 -0.2220 0.0000 'X-RAY DIFFRACTION' 2 ? refined 13.8160 16.2780 33.0930 0.0886 0.1114 0.1215 0.0106 0.0049 0.0009 0.6521 0.5080 1.3715 -0.2499 0.5255 -0.0949 0.0179 0.0170 0.0232 -0.0133 0.0072 0.0131 0.0242 -0.0405 -0.0251 'X-RAY DIFFRACTION' 3 ? refined 14.8460 24.9000 46.2710 0.6357 0.0489 0.9230 -0.0763 -0.3415 -0.0592 72.9083 163.7440 136.2429 109.2301 -75.9724 -111.4984 0.6722 1.4026 -3.7633 1.3512 1.9421 -5.9040 0.9874 -1.4368 -2.6143 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 11 ? ? A 24 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 25 ? ? A 119 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 120 ? ? A 121 ? ? ? ? # _phasing.method SIRAS # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 3 DM . ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CrystalClear . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 42 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -83.12 _pdbx_validate_torsion.psi 45.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 2 ? A SER 1 2 1 Y 1 A PHE 3 ? A PHE 2 3 1 Y 1 A ARG 4 ? A ARG 3 4 1 Y 1 A THR 5 ? A THR 4 5 1 Y 1 A GLY 6 ? A GLY 5 6 1 Y 1 A GLU 7 ? A GLU 6 7 1 Y 1 A ARG 8 ? A ARG 7 8 1 Y 1 A ARG 9 ? A ARG 8 9 1 Y 1 A ALA 122 ? A ALA 121 10 1 Y 1 A SER 123 ? A SER 122 11 1 Y 1 A GLU 124 ? A GLU 123 12 1 Y 1 A LEU 125 ? A LEU 124 13 1 Y 1 A CYS 126 ? A CYS 125 14 1 Y 1 A ASP 127 ? A ASP 126 15 1 Y 1 A LEU 128 ? A LEU 127 16 1 Y 1 A THR 129 ? A THR 128 17 1 Y 1 A GLY 130 ? A GLY 129 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #