data_3U4K # _entry.id 3U4K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U4K RCSB RCSB068297 WWPDB D_1000068297 # _pdbx_database_status.entry_id 3U4K _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rego, A.T.' 1 'Waksman, G.' 2 # _citation.id primary _citation.title ;Crystal structure of the MrkD1P receptor binding domain of Klebsiella pneumoniae and identification of the human collagen V binding interface. ; _citation.journal_abbrev Mol.Microbiol. _citation.journal_volume 86 _citation.page_first 882 _citation.page_last 893 _citation.year 2012 _citation.journal_id_ASTM MOMIEE _citation.country UK _citation.journal_id_ISSN 0950-382X _citation.journal_id_CSD 2007 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22988966 _citation.pdbx_database_id_DOI 10.1111/mmi.12023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rego, A.T.' 1 primary 'Johnson, J.G.' 2 primary 'Geibel, S.' 3 primary 'Enguita, F.J.' 4 primary 'Clegg, S.' 5 primary 'Waksman, G.' 6 # _cell.entry_id 3U4K _cell.length_a 49.813 _cell.length_b 49.813 _cell.length_c 169.933 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U4K _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Fimbria adhesin protein' _entity.formula_weight 19452.291 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Receptor domain (UNP residues 21-181)' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ASWSHPQFEKSGGGGGLVPRGSGSSCWQSNSAYEIN(MSE)A(MSE)GRVVVSPDLPVGSVIATKTWT(MSE)PDNNTIY VTCDRNTTLKSDAKVVAAGLVQGANKVYSTAIPGIGLRFSRKGAIS(MSE)IYPDSYTTTGSSFRLAGSTFTLDIIKTST TTGSGTLASGPYTEYGPGFTILKTSLNADAITIVSPSCTIL ; _entity_poly.pdbx_seq_one_letter_code_can ;ASWSHPQFEKSGGGGGLVPRGSGSSCWQSNSAYEINMAMGRVVVSPDLPVGSVIATKTWTMPDNNTIYVTCDRNTTLKSD AKVVAAGLVQGANKVYSTAIPGIGLRFSRKGAISMIYPDSYTTTGSSFRLAGSTFTLDIIKTSTTTGSGTLASGPYTEYG PGFTILKTSLNADAITIVSPSCTIL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 TRP n 1 4 SER n 1 5 HIS n 1 6 PRO n 1 7 GLN n 1 8 PHE n 1 9 GLU n 1 10 LYS n 1 11 SER n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 GLY n 1 16 GLY n 1 17 LEU n 1 18 VAL n 1 19 PRO n 1 20 ARG n 1 21 GLY n 1 22 SER n 1 23 GLY n 1 24 SER n 1 25 SER n 1 26 CYS n 1 27 TRP n 1 28 GLN n 1 29 SER n 1 30 ASN n 1 31 SER n 1 32 ALA n 1 33 TYR n 1 34 GLU n 1 35 ILE n 1 36 ASN n 1 37 MSE n 1 38 ALA n 1 39 MSE n 1 40 GLY n 1 41 ARG n 1 42 VAL n 1 43 VAL n 1 44 VAL n 1 45 SER n 1 46 PRO n 1 47 ASP n 1 48 LEU n 1 49 PRO n 1 50 VAL n 1 51 GLY n 1 52 SER n 1 53 VAL n 1 54 ILE n 1 55 ALA n 1 56 THR n 1 57 LYS n 1 58 THR n 1 59 TRP n 1 60 THR n 1 61 MSE n 1 62 PRO n 1 63 ASP n 1 64 ASN n 1 65 ASN n 1 66 THR n 1 67 ILE n 1 68 TYR n 1 69 VAL n 1 70 THR n 1 71 CYS n 1 72 ASP n 1 73 ARG n 1 74 ASN n 1 75 THR n 1 76 THR n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 ASP n 1 81 ALA n 1 82 LYS n 1 83 VAL n 1 84 VAL n 1 85 ALA n 1 86 ALA n 1 87 GLY n 1 88 LEU n 1 89 VAL n 1 90 GLN n 1 91 GLY n 1 92 ALA n 1 93 ASN n 1 94 LYS n 1 95 VAL n 1 96 TYR n 1 97 SER n 1 98 THR n 1 99 ALA n 1 100 ILE n 1 101 PRO n 1 102 GLY n 1 103 ILE n 1 104 GLY n 1 105 LEU n 1 106 ARG n 1 107 PHE n 1 108 SER n 1 109 ARG n 1 110 LYS n 1 111 GLY n 1 112 ALA n 1 113 ILE n 1 114 SER n 1 115 MSE n 1 116 ILE n 1 117 TYR n 1 118 PRO n 1 119 ASP n 1 120 SER n 1 121 TYR n 1 122 THR n 1 123 THR n 1 124 THR n 1 125 GLY n 1 126 SER n 1 127 SER n 1 128 PHE n 1 129 ARG n 1 130 LEU n 1 131 ALA n 1 132 GLY n 1 133 SER n 1 134 THR n 1 135 PHE n 1 136 THR n 1 137 LEU n 1 138 ASP n 1 139 ILE n 1 140 ILE n 1 141 LYS n 1 142 THR n 1 143 SER n 1 144 THR n 1 145 THR n 1 146 THR n 1 147 GLY n 1 148 SER n 1 149 GLY n 1 150 THR n 1 151 LEU n 1 152 ALA n 1 153 SER n 1 154 GLY n 1 155 PRO n 1 156 TYR n 1 157 THR n 1 158 GLU n 1 159 TYR n 1 160 GLY n 1 161 PRO n 1 162 GLY n 1 163 PHE n 1 164 THR n 1 165 ILE n 1 166 LEU n 1 167 LYS n 1 168 THR n 1 169 SER n 1 170 LEU n 1 171 ASN n 1 172 ALA n 1 173 ASP n 1 174 ALA n 1 175 ILE n 1 176 THR n 1 177 ILE n 1 178 VAL n 1 179 SER n 1 180 PRO n 1 181 SER n 1 182 CYS n 1 183 THR n 1 184 ILE n 1 185 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mrkD, mrkD1P' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain IA565 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'expressed in the Periplasm' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Klebsiella pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 573 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pASK-IBA12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MRKD_KLEPN _struct_ref.pdbx_db_accession P21648 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SCWQSNSAYEINMAMGRVVVSPDLPVGSVIATKTWTMPDNNTIYVTCDRNTTLKSDAKVVAAGLVQGANKVYSTAIPGIG LRFSRKGAISMIYPDSYTTTGSSFRLVGSTFTLDIIKTSTTTGSGTLASGPYTEYGPGFTILKTSLNADAITIVSPSCTI L ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3U4K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 25 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P21648 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3U4K ALA A 1 ? UNP P21648 ? ? 'EXPRESSION TAG' -3 1 1 3U4K SER A 2 ? UNP P21648 ? ? 'EXPRESSION TAG' -2 2 1 3U4K TRP A 3 ? UNP P21648 ? ? 'EXPRESSION TAG' -1 3 1 3U4K SER A 4 ? UNP P21648 ? ? 'EXPRESSION TAG' 0 4 1 3U4K HIS A 5 ? UNP P21648 ? ? 'EXPRESSION TAG' 1 5 1 3U4K PRO A 6 ? UNP P21648 ? ? 'EXPRESSION TAG' 2 6 1 3U4K GLN A 7 ? UNP P21648 ? ? 'EXPRESSION TAG' 3 7 1 3U4K PHE A 8 ? UNP P21648 ? ? 'EXPRESSION TAG' 4 8 1 3U4K GLU A 9 ? UNP P21648 ? ? 'EXPRESSION TAG' 5 9 1 3U4K LYS A 10 ? UNP P21648 ? ? 'EXPRESSION TAG' 6 10 1 3U4K SER A 11 ? UNP P21648 ? ? 'EXPRESSION TAG' 7 11 1 3U4K GLY A 12 ? UNP P21648 ? ? 'EXPRESSION TAG' 8 12 1 3U4K GLY A 13 ? UNP P21648 ? ? 'EXPRESSION TAG' 9 13 1 3U4K GLY A 14 ? UNP P21648 ? ? 'EXPRESSION TAG' 10 14 1 3U4K GLY A 15 ? UNP P21648 ? ? 'EXPRESSION TAG' 11 15 1 3U4K GLY A 16 ? UNP P21648 ? ? 'EXPRESSION TAG' 12 16 1 3U4K LEU A 17 ? UNP P21648 ? ? 'EXPRESSION TAG' 13 17 1 3U4K VAL A 18 ? UNP P21648 ? ? 'EXPRESSION TAG' 14 18 1 3U4K PRO A 19 ? UNP P21648 ? ? 'EXPRESSION TAG' 15 19 1 3U4K ARG A 20 ? UNP P21648 ? ? 'EXPRESSION TAG' 16 20 1 3U4K GLY A 21 ? UNP P21648 ? ? 'EXPRESSION TAG' 17 21 1 3U4K SER A 22 ? UNP P21648 ? ? 'EXPRESSION TAG' 18 22 1 3U4K GLY A 23 ? UNP P21648 ? ? 'EXPRESSION TAG' 19 23 1 3U4K SER A 24 ? UNP P21648 ? ? 'EXPRESSION TAG' 20 24 1 3U4K ALA A 131 ? UNP P21648 VAL 127 VARIANT 127 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U4K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_percent_sol 60.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M Sodium Acetate, 8 % PEG 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-04-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 311' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U4K _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 41.81 _reflns.d_resolution_high 3.0 _reflns.number_obs 5246 _reflns.number_all 5317 _reflns.percent_possible_obs 98.67 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.9258 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.77 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 3.00 3.16 98.64 0.61 ? ? 21.61 ? ? ? ? ? ? 1 2 3.16 3.35 98.55 0.35 ? ? 21.55 ? ? ? ? ? ? 1 3 3.35 3.59 98.16 0.23 ? ? 21.62 ? ? ? ? ? ? 1 4 3.59 3.87 98.64 0.17 ? ? 21.24 ? ? ? ? ? ? 1 5 3.87 4.24 98.94 0.11 ? ? 20.97 ? ? ? ? ? ? 1 6 4.24 4.74 98.98 0.08 ? ? 20.73 ? ? ? ? ? ? 1 7 4.74 5.48 98.67 0.07 ? ? 20.45 ? ? ? ? ? ? 1 8 5.48 6.71 99.13 0.07 ? ? 19.35 ? ? ? ? ? ? 1 9 6.71 9.49 99.52 0.05 ? ? 18.70 ? ? ? ? ? ? 1 10 9.49 41.81 97.01 0.04 ? ? 17.29 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U4K _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5006 _refine.ls_number_reflns_all 5356 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.64 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 97.93 _refine.ls_R_factor_obs 0.22893 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22687 _refine.ls_R_factor_R_free 0.27303 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 239 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.928 _refine.correlation_coeff_Fo_to_Fc_free 0.886 _refine.B_iso_mean 71.627 _refine.aniso_B[1][1] 4.18 _refine.aniso_B[2][2] 4.18 _refine.aniso_B[3][3] -6.27 _refine.aniso_B[1][2] 2.09 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.616 _refine.pdbx_overall_ESU_R_Free 0.410 _refine.overall_SU_ML 0.306 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 16.566 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1196 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1196 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 56.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.020 ? 1219 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.868 1.976 ? 1665 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.394 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.814 23.611 ? 36 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.870 15.000 ? 181 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.349 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.051 0.200 ? 205 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.021 ? 885 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.000 _refine_ls_shell.d_res_low 3.078 _refine_ls_shell.number_reflns_R_work 306 _refine_ls_shell.R_factor_R_work 0.307 _refine_ls_shell.percent_reflns_obs 97.58 _refine_ls_shell.R_factor_R_free 0.409 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3U4K _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 3U4K _struct.title 'Crystal structure of the receptor binding domain of plasmid-born adhesin MrkD1P of Klebsiella pneumoniae' _struct.pdbx_descriptor 'Fimbria adhesin protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U4K _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'pili adhesion, collagen V binder, pathogenicity, jelly-roll beta barrel fold, CELL ADHESION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 92 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 94 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 88 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 90 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 22 A CYS 67 1_555 ? ? ? ? ? ? ? 2.039 ? covale1 covale ? ? A ASN 36 C ? ? ? 1_555 A MSE 37 N ? ? A ASN 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 37 C ? ? ? 1_555 A ALA 38 N ? ? A MSE 33 A ALA 34 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A ALA 38 C ? ? ? 1_555 A MSE 39 N ? ? A ALA 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 39 C ? ? ? 1_555 A GLY 40 N ? ? A MSE 35 A GLY 36 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A THR 60 C ? ? ? 1_555 A MSE 61 N ? ? A THR 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 61 C ? ? ? 1_555 A PRO 62 N ? ? A MSE 57 A PRO 58 1_555 ? ? ? ? ? ? ? 1.344 ? covale7 covale ? ? A SER 114 C ? ? ? 1_555 A MSE 115 N ? ? A SER 110 A MSE 111 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 115 C ? ? ? 1_555 A ILE 116 N ? ? A MSE 111 A ILE 112 1_555 ? ? ? ? ? ? ? 1.331 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 117 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 113 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 118 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 114 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 3 ? D ? 5 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 26 ? GLN A 28 ? CYS A 22 GLN A 24 A 2 ILE A 67 ? VAL A 83 ? ILE A 63 VAL A 79 A 3 GLY A 154 ? GLY A 160 ? GLY A 150 GLY A 156 A 4 LEU A 166 ? LEU A 170 ? LEU A 162 LEU A 166 A 5 TYR A 33 ? ASN A 36 ? TYR A 29 ASN A 32 B 1 CYS A 26 ? GLN A 28 ? CYS A 22 GLN A 24 B 2 ILE A 67 ? VAL A 83 ? ILE A 63 VAL A 79 B 3 ASP A 119 ? ARG A 129 ? ASP A 115 ARG A 125 C 1 GLY A 40 ? VAL A 43 ? GLY A 36 VAL A 39 C 2 ILE A 175 ? VAL A 178 ? ILE A 171 VAL A 174 C 3 GLY A 149 ? THR A 150 ? GLY A 145 THR A 146 D 1 VAL A 53 ? MSE A 61 ? VAL A 49 MSE A 57 D 2 SER A 133 ? LYS A 141 ? SER A 129 LYS A 137 D 3 ILE A 103 ? GLY A 111 ? ILE A 99 GLY A 107 D 4 TYR A 96 ? SER A 97 ? TYR A 92 SER A 93 D 5 VAL A 89 ? GLN A 90 ? VAL A 85 GLN A 86 E 1 VAL A 53 ? MSE A 61 ? VAL A 49 MSE A 57 E 2 SER A 133 ? LYS A 141 ? SER A 129 LYS A 137 E 3 ILE A 103 ? GLY A 111 ? ILE A 99 GLY A 107 E 4 MSE A 115 ? ILE A 116 ? MSE A 111 ILE A 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 27 ? N TRP A 23 O THR A 70 ? O THR A 66 A 2 3 N LYS A 82 ? N LYS A 78 O GLU A 158 ? O GLU A 154 A 3 4 N GLY A 154 ? N GLY A 150 O LEU A 170 ? O LEU A 166 A 4 5 O LYS A 167 ? O LYS A 163 N TYR A 33 ? N TYR A 29 B 1 2 N TRP A 27 ? N TRP A 23 O THR A 70 ? O THR A 66 B 2 3 N SER A 79 ? N SER A 75 O TYR A 121 ? O TYR A 117 C 1 2 N VAL A 42 ? N VAL A 38 O VAL A 178 ? O VAL A 174 C 2 3 O ILE A 177 ? O ILE A 173 N GLY A 149 ? N GLY A 145 D 1 2 N TRP A 59 ? N TRP A 55 O PHE A 135 ? O PHE A 131 D 2 3 O ILE A 140 ? O ILE A 136 N GLY A 104 ? N GLY A 100 D 3 4 O LEU A 105 ? O LEU A 101 N TYR A 96 ? N TYR A 92 D 4 5 O SER A 97 ? O SER A 93 N VAL A 89 ? N VAL A 85 E 1 2 N TRP A 59 ? N TRP A 55 O PHE A 135 ? O PHE A 131 E 2 3 O ILE A 140 ? O ILE A 136 N GLY A 104 ? N GLY A 100 E 3 4 N ARG A 109 ? N ARG A 105 O MSE A 115 ? O MSE A 111 # _atom_sites.entry_id 3U4K _atom_sites.fract_transf_matrix[1][1] 0.020075 _atom_sites.fract_transf_matrix[1][2] 0.011590 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023181 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005885 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 TRP 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 HIS 5 1 ? ? ? A . n A 1 6 PRO 6 2 ? ? ? A . n A 1 7 GLN 7 3 ? ? ? A . n A 1 8 PHE 8 4 ? ? ? A . n A 1 9 GLU 9 5 ? ? ? A . n A 1 10 LYS 10 6 ? ? ? A . n A 1 11 SER 11 7 ? ? ? A . n A 1 12 GLY 12 8 ? ? ? A . n A 1 13 GLY 13 9 ? ? ? A . n A 1 14 GLY 14 10 ? ? ? A . n A 1 15 GLY 15 11 ? ? ? A . n A 1 16 GLY 16 12 ? ? ? A . n A 1 17 LEU 17 13 ? ? ? A . n A 1 18 VAL 18 14 ? ? ? A . n A 1 19 PRO 19 15 ? ? ? A . n A 1 20 ARG 20 16 ? ? ? A . n A 1 21 GLY 21 17 ? ? ? A . n A 1 22 SER 22 18 ? ? ? A . n A 1 23 GLY 23 19 19 GLY GLY A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 SER 25 21 21 SER SER A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 TRP 27 23 23 TRP TRP A . n A 1 28 GLN 28 24 24 GLN GLN A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 ASN 30 26 26 ASN ASN A . n A 1 31 SER 31 27 27 SER SER A . n A 1 32 ALA 32 28 28 ALA ALA A . n A 1 33 TYR 33 29 29 TYR TYR A . n A 1 34 GLU 34 30 30 GLU GLU A . n A 1 35 ILE 35 31 31 ILE ILE A . n A 1 36 ASN 36 32 32 ASN ASN A . n A 1 37 MSE 37 33 33 MSE MSE A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 MSE 39 35 35 MSE MSE A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 ARG 41 37 37 ARG ARG A . n A 1 42 VAL 42 38 38 VAL VAL A . n A 1 43 VAL 43 39 39 VAL VAL A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 SER 45 41 41 SER SER A . n A 1 46 PRO 46 42 42 PRO PRO A . n A 1 47 ASP 47 43 43 ASP ASP A . n A 1 48 LEU 48 44 44 LEU LEU A . n A 1 49 PRO 49 45 45 PRO PRO A . n A 1 50 VAL 50 46 46 VAL VAL A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 SER 52 48 48 SER SER A . n A 1 53 VAL 53 49 49 VAL VAL A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 ALA 55 51 51 ALA ALA A . n A 1 56 THR 56 52 52 THR THR A . n A 1 57 LYS 57 53 53 LYS LYS A . n A 1 58 THR 58 54 54 THR THR A . n A 1 59 TRP 59 55 55 TRP TRP A . n A 1 60 THR 60 56 56 THR THR A . n A 1 61 MSE 61 57 57 MSE MSE A . n A 1 62 PRO 62 58 58 PRO PRO A . n A 1 63 ASP 63 59 59 ASP ASP A . n A 1 64 ASN 64 60 60 ASN ASN A . n A 1 65 ASN 65 61 61 ASN ASN A . n A 1 66 THR 66 62 62 THR THR A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 TYR 68 64 64 TYR TYR A . n A 1 69 VAL 69 65 65 VAL VAL A . n A 1 70 THR 70 66 66 THR THR A . n A 1 71 CYS 71 67 67 CYS CYS A . n A 1 72 ASP 72 68 68 ASP ASP A . n A 1 73 ARG 73 69 69 ARG ARG A . n A 1 74 ASN 74 70 70 ASN ASN A . n A 1 75 THR 75 71 71 THR THR A . n A 1 76 THR 76 72 72 THR THR A . n A 1 77 LEU 77 73 73 LEU LEU A . n A 1 78 LYS 78 74 74 LYS LYS A . n A 1 79 SER 79 75 75 SER SER A . n A 1 80 ASP 80 76 76 ASP ASP A . n A 1 81 ALA 81 77 77 ALA ALA A . n A 1 82 LYS 82 78 78 LYS LYS A . n A 1 83 VAL 83 79 79 VAL VAL A . n A 1 84 VAL 84 80 80 VAL VAL A . n A 1 85 ALA 85 81 81 ALA ALA A . n A 1 86 ALA 86 82 82 ALA ALA A . n A 1 87 GLY 87 83 83 GLY GLY A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 VAL 89 85 85 VAL VAL A . n A 1 90 GLN 90 86 86 GLN GLN A . n A 1 91 GLY 91 87 87 GLY GLY A . n A 1 92 ALA 92 88 88 ALA ALA A . n A 1 93 ASN 93 89 89 ASN ASN A . n A 1 94 LYS 94 90 90 LYS LYS A . n A 1 95 VAL 95 91 91 VAL VAL A . n A 1 96 TYR 96 92 92 TYR TYR A . n A 1 97 SER 97 93 93 SER SER A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 ALA 99 95 95 ALA ALA A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 PRO 101 97 97 PRO PRO A . n A 1 102 GLY 102 98 98 GLY GLY A . n A 1 103 ILE 103 99 99 ILE ILE A . n A 1 104 GLY 104 100 100 GLY GLY A . n A 1 105 LEU 105 101 101 LEU LEU A . n A 1 106 ARG 106 102 102 ARG ARG A . n A 1 107 PHE 107 103 103 PHE PHE A . n A 1 108 SER 108 104 104 SER SER A . n A 1 109 ARG 109 105 105 ARG ARG A . n A 1 110 LYS 110 106 106 LYS LYS A . n A 1 111 GLY 111 107 107 GLY GLY A . n A 1 112 ALA 112 108 108 ALA ALA A . n A 1 113 ILE 113 109 109 ILE ILE A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 MSE 115 111 111 MSE MSE A . n A 1 116 ILE 116 112 112 ILE ILE A . n A 1 117 TYR 117 113 113 TYR TYR A . n A 1 118 PRO 118 114 114 PRO PRO A . n A 1 119 ASP 119 115 115 ASP ASP A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 TYR 121 117 117 TYR TYR A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 THR 123 119 119 THR THR A . n A 1 124 THR 124 120 120 THR THR A . n A 1 125 GLY 125 121 121 GLY GLY A . n A 1 126 SER 126 122 122 SER SER A . n A 1 127 SER 127 123 123 SER SER A . n A 1 128 PHE 128 124 124 PHE PHE A . n A 1 129 ARG 129 125 125 ARG ARG A . n A 1 130 LEU 130 126 126 LEU LEU A . n A 1 131 ALA 131 127 127 ALA ALA A . n A 1 132 GLY 132 128 128 GLY GLY A . n A 1 133 SER 133 129 129 SER SER A . n A 1 134 THR 134 130 130 THR THR A . n A 1 135 PHE 135 131 131 PHE PHE A . n A 1 136 THR 136 132 132 THR THR A . n A 1 137 LEU 137 133 133 LEU LEU A . n A 1 138 ASP 138 134 134 ASP ASP A . n A 1 139 ILE 139 135 135 ILE ILE A . n A 1 140 ILE 140 136 136 ILE ILE A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 THR 142 138 138 THR THR A . n A 1 143 SER 143 139 139 SER SER A . n A 1 144 THR 144 140 140 THR THR A . n A 1 145 THR 145 141 141 THR THR A . n A 1 146 THR 146 142 142 THR THR A . n A 1 147 GLY 147 143 143 GLY GLY A . n A 1 148 SER 148 144 144 SER SER A . n A 1 149 GLY 149 145 145 GLY GLY A . n A 1 150 THR 150 146 146 THR THR A . n A 1 151 LEU 151 147 147 LEU LEU A . n A 1 152 ALA 152 148 148 ALA ALA A . n A 1 153 SER 153 149 149 SER SER A . n A 1 154 GLY 154 150 150 GLY GLY A . n A 1 155 PRO 155 151 151 PRO PRO A . n A 1 156 TYR 156 152 152 TYR TYR A . n A 1 157 THR 157 153 153 THR THR A . n A 1 158 GLU 158 154 154 GLU GLU A . n A 1 159 TYR 159 155 155 TYR TYR A . n A 1 160 GLY 160 156 156 GLY GLY A . n A 1 161 PRO 161 157 157 PRO PRO A . n A 1 162 GLY 162 158 158 GLY GLY A . n A 1 163 PHE 163 159 159 PHE PHE A . n A 1 164 THR 164 160 160 THR THR A . n A 1 165 ILE 165 161 161 ILE ILE A . n A 1 166 LEU 166 162 162 LEU LEU A . n A 1 167 LYS 167 163 163 LYS LYS A . n A 1 168 THR 168 164 164 THR THR A . n A 1 169 SER 169 165 165 SER SER A . n A 1 170 LEU 170 166 166 LEU LEU A . n A 1 171 ASN 171 167 167 ASN ASN A . n A 1 172 ALA 172 168 168 ALA ALA A . n A 1 173 ASP 173 169 169 ASP ASP A . n A 1 174 ALA 174 170 170 ALA ALA A . n A 1 175 ILE 175 171 171 ILE ILE A . n A 1 176 THR 176 172 172 THR THR A . n A 1 177 ILE 177 173 173 ILE ILE A . n A 1 178 VAL 178 174 174 VAL VAL A . n A 1 179 SER 179 175 175 SER SER A . n A 1 180 PRO 180 176 176 PRO PRO A . n A 1 181 SER 181 177 177 SER SER A . n A 1 182 CYS 182 178 178 CYS CYS A . n A 1 183 THR 183 179 179 THR THR A . n A 1 184 ILE 184 180 180 ILE ILE A . n A 1 185 LEU 185 181 181 LEU LEU A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 33 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 35 ? MET SELENOMETHIONINE 3 A MSE 61 A MSE 57 ? MET SELENOMETHIONINE 4 A MSE 115 A MSE 111 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-26 2 'Structure model' 1 1 2012-12-19 3 'Structure model' 1 2 2013-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 DNA . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MSE A 33 ? ? -89.13 37.12 2 1 TYR A 152 ? ? -134.45 -45.23 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -3 ? A ALA 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A TRP -1 ? A TRP 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A HIS 1 ? A HIS 5 6 1 Y 1 A PRO 2 ? A PRO 6 7 1 Y 1 A GLN 3 ? A GLN 7 8 1 Y 1 A PHE 4 ? A PHE 8 9 1 Y 1 A GLU 5 ? A GLU 9 10 1 Y 1 A LYS 6 ? A LYS 10 11 1 Y 1 A SER 7 ? A SER 11 12 1 Y 1 A GLY 8 ? A GLY 12 13 1 Y 1 A GLY 9 ? A GLY 13 14 1 Y 1 A GLY 10 ? A GLY 14 15 1 Y 1 A GLY 11 ? A GLY 15 16 1 Y 1 A GLY 12 ? A GLY 16 17 1 Y 1 A LEU 13 ? A LEU 17 18 1 Y 1 A VAL 14 ? A VAL 18 19 1 Y 1 A PRO 15 ? A PRO 19 20 1 Y 1 A ARG 16 ? A ARG 20 21 1 Y 1 A GLY 17 ? A GLY 21 22 1 Y 1 A SER 18 ? A SER 22 #