HEADER PROTEIN BINDING 13-OCT-11 3U7D TITLE CRYSTAL STRUCTURE OF THE KRIT1/CCM1 FERM DOMAIN IN COMPLEX WITH THE TITLE 2 HEART OF GLASS (HEG1) CYTOPLASMIC TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: KREV INTERACTION TRAPPED PROTEIN 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: FERM DOMAIN, RESIDUES 417-736; COMPND 5 SYNONYM: KREV INTERACTION TRAPPED 1, CEREBRAL CAVERNOUS MALFORMATIONS COMPND 6 1 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN HEG HOMOLOG 1; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: C-TERMINAL CYTOPLASMIC TAIL, RESIDUES 1356-1381; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCM1, CEREBRAL CAVERNOUS MALFORMATIONS 1 PROTEIN, KREV SOURCE 6 INTERACTION TRAPPED PROTEIN 1 OR CCM1, KRIT1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLEICS-07; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PSI-BIOLOGY, ASSEMBLY, DYNAMICS AND EVOLUTION OF CELL-CELL AND CELL- KEYWDS 2 MATRIX ADHESIONS, CELLMAT, FERM DOMAIN, RAP1 EFFECTOR, MEMBRANE KEYWDS 3 PROTEIN CYTOPLASMIC TAIL, PROTEIN BINDING, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR A.R.GINGRAS,J.J.LIU,M.H.GINSBERG,ASSEMBLY,DYNAMICS AND EVOLUTION OF AUTHOR 2 CELL-CELL AND CELL-MATRIX ADHESIONS (CELLMAT) REVDAT 4 28-FEB-24 3U7D 1 SEQADV REVDAT 3 27-FEB-13 3U7D 1 KEYWDS REVDAT 2 17-OCT-12 3U7D 1 JRNL REVDAT 1 12-SEP-12 3U7D 0 JRNL AUTH A.R.GINGRAS,J.J.LIU,M.H.GINSBERG JRNL TITL STRUCTURAL BASIS OF THE JUNCTIONAL ANCHORAGE OF THE CEREBRAL JRNL TITL 2 CAVERNOUS MALFORMATIONS COMPLEX. JRNL REF J.CELL BIOL. V. 199 39 2012 JRNL REFN ISSN 0021-9525 JRNL PMID 23007647 JRNL DOI 10.1083/JCB.201205109 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 26420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.01000 REMARK 3 B22 (A**2) : -1.42000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.816 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5241 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7077 ; 1.746 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 7.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;39.239 ;24.089 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 985 ;20.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;23.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3876 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3106 ; 1.033 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5036 ; 1.912 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2135 ; 2.344 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2040 ; 3.709 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3U7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : HORIZONTALLY DIFFRACTING SI REMARK 200 (111) MONOCHROMATOR REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR/RAYONIX 3X3 MOSAIC 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000 AND 100MM CITRATE, PH REMARK 280 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE IS TWO COMPLEXES OF THE KRIT1 FERM DOMAIN WITH THE REMARK 300 HEG1 CYTOPLASMIC TAIL IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 415 REMARK 465 ALA A 416 REMARK 465 LYS A 417 REMARK 465 PRO A 418 REMARK 465 TYR A 419 REMARK 465 LYS A 647 REMARK 465 ALA A 648 REMARK 465 SER A 649 REMARK 465 PRO A 650 REMARK 465 SER A 651 REMARK 465 ASN A 652 REMARK 465 PRO A 731 REMARK 465 THR A 732 REMARK 465 GLU A 733 REMARK 465 ARG A 734 REMARK 465 ASN A 735 REMARK 465 SER A 736 REMARK 465 SER B 1356 REMARK 465 ARG B 1357 REMARK 465 HIS B 1358 REMARK 465 SER B 1359 REMARK 465 CYS B 1360 REMARK 465 ILE B 1361 REMARK 465 PHE B 1362 REMARK 465 PRO B 1363 REMARK 465 GLY B 1364 REMARK 465 GLN B 1365 REMARK 465 TYR B 1366 REMARK 465 ASN B 1367 REMARK 465 PRO B 1368 REMARK 465 SER B 1369 REMARK 465 PHE B 1370 REMARK 465 ILE B 1371 REMARK 465 SER B 1372 REMARK 465 ASP B 1373 REMARK 465 GLU B 1374 REMARK 465 GLY C 415 REMARK 465 ALA C 416 REMARK 465 LYS C 417 REMARK 465 PRO C 418 REMARK 465 TYR C 419 REMARK 465 LYS C 647 REMARK 465 ALA C 648 REMARK 465 SER C 649 REMARK 465 PRO C 650 REMARK 465 SER C 651 REMARK 465 ASN C 652 REMARK 465 PRO C 731 REMARK 465 THR C 732 REMARK 465 GLU C 733 REMARK 465 ARG C 734 REMARK 465 ASN C 735 REMARK 465 SER C 736 REMARK 465 SER D 1356 REMARK 465 ARG D 1357 REMARK 465 HIS D 1358 REMARK 465 SER D 1359 REMARK 465 CYS D 1360 REMARK 465 ILE D 1361 REMARK 465 PHE D 1362 REMARK 465 PRO D 1363 REMARK 465 GLY D 1364 REMARK 465 GLN D 1365 REMARK 465 TYR D 1366 REMARK 465 ASN D 1367 REMARK 465 PRO D 1368 REMARK 465 SER D 1369 REMARK 465 PHE D 1370 REMARK 465 ILE D 1371 REMARK 465 SER D 1372 REMARK 465 ASP D 1373 REMARK 465 GLU D 1374 REMARK 465 SER D 1375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 705 CG CD CE NZ REMARK 470 MET A 730 CG SD CE REMARK 470 LYS C 705 CG CD CE NZ REMARK 470 MET C 730 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 631 CG GLU C 631 CD 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 499 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO C 499 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO C 525 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 514 102.09 -49.79 REMARK 500 HIS A 571 -115.69 -78.36 REMARK 500 GLN A 573 -69.93 88.42 REMARK 500 GLU A 578 85.00 -50.03 REMARK 500 GLU A 579 -25.68 159.98 REMARK 500 ILE A 664 -10.71 -47.17 REMARK 500 THR A 712 144.30 179.03 REMARK 500 ARG B1376 -48.21 -156.76 REMARK 500 LYS C 437 -77.46 -60.74 REMARK 500 ASN C 440 36.45 -91.18 REMARK 500 ARG C 452 46.81 -72.88 REMARK 500 PRO C 499 -33.75 -38.84 REMARK 500 LEU C 514 109.15 -55.90 REMARK 500 GLU C 523 -25.98 -141.42 REMARK 500 LYS C 572 -57.43 -29.96 REMARK 500 GLU C 578 -38.96 -24.90 REMARK 500 SER C 609 -77.44 -75.50 REMARK 500 THR C 610 -26.64 -16.99 REMARK 500 LYS C 654 -159.87 69.77 REMARK 500 VAL C 655 118.04 -161.97 REMARK 500 ASP C 694 23.18 -75.95 REMARK 500 GLU C 703 46.51 -106.92 REMARK 500 ASN C 704 -3.14 -155.62 REMARK 500 LYS C 705 20.89 33.08 REMARK 500 THR C 712 143.06 175.81 REMARK 500 LEU C 729 -61.01 -104.49 REMARK 500 ASP D1379 74.58 -113.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS C 654 VAL C 655 -148.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CELLMAT RELATED DB: TARGETTRACK REMARK 900 RELATED ID: NYSGRC-010986 RELATED DB: TARGETTRACK DBREF 3U7D A 417 736 UNP O00522 KRIT1_HUMAN 417 736 DBREF 3U7D B 1356 1381 UNP Q9ULI3 HEG1_HUMAN 1356 1381 DBREF 3U7D C 417 736 UNP O00522 KRIT1_HUMAN 417 736 DBREF 3U7D D 1356 1381 UNP Q9ULI3 HEG1_HUMAN 1356 1381 SEQADV 3U7D GLY A 415 UNP O00522 EXPRESSION TAG SEQADV 3U7D ALA A 416 UNP O00522 EXPRESSION TAG SEQADV 3U7D GLY C 415 UNP O00522 EXPRESSION TAG SEQADV 3U7D ALA C 416 UNP O00522 EXPRESSION TAG SEQRES 1 A 322 GLY ALA LYS PRO TYR GLU LYS VAL ARG ILE TYR ARG MET SEQRES 2 A 322 ASP GLY SER TYR ARG SER VAL GLU LEU LYS HIS GLY ASN SEQRES 3 A 322 ASN THR THR VAL GLN GLN ILE MET GLU GLY MET ARG LEU SEQRES 4 A 322 SER GLN GLU THR GLN GLN TYR PHE THR ILE TRP ILE CYS SEQRES 5 A 322 SER GLU ASN LEU SER LEU GLN LEU LYS PRO TYR HIS LYS SEQRES 6 A 322 PRO LEU GLN HIS VAL ARG ASP TRP PRO GLU ILE LEU ALA SEQRES 7 A 322 GLU LEU THR ASN LEU ASP PRO GLN ARG GLU THR PRO GLN SEQRES 8 A 322 LEU PHE LEU ARG ARG ASP VAL ARG LEU PRO LEU GLU VAL SEQRES 9 A 322 GLU LYS GLN ILE GLU ASP PRO LEU ALA ILE LEU ILE LEU SEQRES 10 A 322 PHE ASP GLU ALA ARG TYR ASN LEU LEU LYS GLY PHE TYR SEQRES 11 A 322 THR ALA PRO ASP ALA LYS LEU ILE THR LEU ALA SER LEU SEQRES 12 A 322 LEU LEU GLN ILE VAL TYR GLY ASN TYR GLU SER LYS LYS SEQRES 13 A 322 HIS LYS GLN GLY PHE LEU ASN GLU GLU ASN LEU LYS SER SEQRES 14 A 322 ILE VAL PRO VAL THR LYS LEU LYS SER LYS ALA PRO HIS SEQRES 15 A 322 TRP THR ASN ARG ILE LEU HIS GLU TYR LYS ASN LEU SER SEQRES 16 A 322 THR SER GLU GLY VAL SER LYS GLU MET HIS HIS LEU GLN SEQRES 17 A 322 ARG MET PHE LEU GLN ASN CYS TRP GLU ILE PRO THR TYR SEQRES 18 A 322 GLY ALA ALA PHE PHE THR GLY GLN ILE PHE THR LYS ALA SEQRES 19 A 322 SER PRO SER ASN HIS LYS VAL ILE PRO VAL TYR VAL GLY SEQRES 20 A 322 VAL ASN ILE LYS GLY LEU HIS LEU LEU ASN MET GLU THR SEQRES 21 A 322 LYS ALA LEU LEU ILE SER LEU LYS TYR GLY CYS PHE MET SEQRES 22 A 322 TRP GLN LEU GLY ASP THR ASP THR CYS PHE GLN ILE HIS SEQRES 23 A 322 SER MET GLU ASN LYS MET SER PHE ILE VAL HIS THR LYS SEQRES 24 A 322 GLN ALA GLY LEU VAL VAL LYS LEU LEU MET LYS LEU ASN SEQRES 25 A 322 GLY GLN LEU MET PRO THR GLU ARG ASN SER SEQRES 1 B 26 SER ARG HIS SER CYS ILE PHE PRO GLY GLN TYR ASN PRO SEQRES 2 B 26 SER PHE ILE SER ASP GLU SER ARG ARG ARG ASP TYR PHE SEQRES 1 C 322 GLY ALA LYS PRO TYR GLU LYS VAL ARG ILE TYR ARG MET SEQRES 2 C 322 ASP GLY SER TYR ARG SER VAL GLU LEU LYS HIS GLY ASN SEQRES 3 C 322 ASN THR THR VAL GLN GLN ILE MET GLU GLY MET ARG LEU SEQRES 4 C 322 SER GLN GLU THR GLN GLN TYR PHE THR ILE TRP ILE CYS SEQRES 5 C 322 SER GLU ASN LEU SER LEU GLN LEU LYS PRO TYR HIS LYS SEQRES 6 C 322 PRO LEU GLN HIS VAL ARG ASP TRP PRO GLU ILE LEU ALA SEQRES 7 C 322 GLU LEU THR ASN LEU ASP PRO GLN ARG GLU THR PRO GLN SEQRES 8 C 322 LEU PHE LEU ARG ARG ASP VAL ARG LEU PRO LEU GLU VAL SEQRES 9 C 322 GLU LYS GLN ILE GLU ASP PRO LEU ALA ILE LEU ILE LEU SEQRES 10 C 322 PHE ASP GLU ALA ARG TYR ASN LEU LEU LYS GLY PHE TYR SEQRES 11 C 322 THR ALA PRO ASP ALA LYS LEU ILE THR LEU ALA SER LEU SEQRES 12 C 322 LEU LEU GLN ILE VAL TYR GLY ASN TYR GLU SER LYS LYS SEQRES 13 C 322 HIS LYS GLN GLY PHE LEU ASN GLU GLU ASN LEU LYS SER SEQRES 14 C 322 ILE VAL PRO VAL THR LYS LEU LYS SER LYS ALA PRO HIS SEQRES 15 C 322 TRP THR ASN ARG ILE LEU HIS GLU TYR LYS ASN LEU SER SEQRES 16 C 322 THR SER GLU GLY VAL SER LYS GLU MET HIS HIS LEU GLN SEQRES 17 C 322 ARG MET PHE LEU GLN ASN CYS TRP GLU ILE PRO THR TYR SEQRES 18 C 322 GLY ALA ALA PHE PHE THR GLY GLN ILE PHE THR LYS ALA SEQRES 19 C 322 SER PRO SER ASN HIS LYS VAL ILE PRO VAL TYR VAL GLY SEQRES 20 C 322 VAL ASN ILE LYS GLY LEU HIS LEU LEU ASN MET GLU THR SEQRES 21 C 322 LYS ALA LEU LEU ILE SER LEU LYS TYR GLY CYS PHE MET SEQRES 22 C 322 TRP GLN LEU GLY ASP THR ASP THR CYS PHE GLN ILE HIS SEQRES 23 C 322 SER MET GLU ASN LYS MET SER PHE ILE VAL HIS THR LYS SEQRES 24 C 322 GLN ALA GLY LEU VAL VAL LYS LEU LEU MET LYS LEU ASN SEQRES 25 C 322 GLY GLN LEU MET PRO THR GLU ARG ASN SER SEQRES 1 D 26 SER ARG HIS SER CYS ILE PHE PRO GLY GLN TYR ASN PRO SEQRES 2 D 26 SER PHE ILE SER ASP GLU SER ARG ARG ARG ASP TYR PHE FORMUL 5 HOH *10(H2 O) HELIX 1 1 HIS A 438 THR A 442 5 5 HELIX 2 2 THR A 443 MET A 451 1 9 HELIX 3 3 GLU A 456 GLN A 459 5 4 HELIX 4 4 LYS A 479 ASP A 486 1 8 HELIX 5 5 ASP A 486 THR A 495 1 10 HELIX 6 6 PRO A 515 LYS A 520 1 6 HELIX 7 7 ASP A 524 LYS A 541 1 18 HELIX 8 8 PRO A 547 GLY A 564 1 18 HELIX 9 9 ASN A 580 ILE A 584 5 5 HELIX 10 10 LYS A 593 HIS A 596 5 4 HELIX 11 11 TRP A 597 SER A 611 1 15 HELIX 12 12 GLU A 617 TRP A 630 1 14 HELIX 13 13 GLN A 714 GLN A 728 1 15 HELIX 14 14 HIS C 438 THR C 442 5 5 HELIX 15 15 THR C 443 MET C 451 1 9 HELIX 16 16 LYS C 479 ASP C 486 1 8 HELIX 17 17 ASP C 486 THR C 495 1 10 HELIX 18 18 ASP C 498 GLU C 502 5 5 HELIX 19 19 PRO C 515 LYS C 520 1 6 HELIX 20 20 ASP C 524 LYS C 541 1 18 HELIX 21 21 PRO C 547 GLY C 564 1 18 HELIX 22 22 GLU C 567 LYS C 572 1 6 HELIX 23 23 ASN C 577 LYS C 582 1 6 HELIX 24 24 LYS C 593 HIS C 596 5 4 HELIX 25 25 TRP C 597 THR C 610 1 14 HELIX 26 26 GLU C 617 TRP C 630 1 14 HELIX 27 27 GLN C 714 GLY C 727 1 14 SHEET 1 A 5 TYR A 431 GLU A 435 0 SHEET 2 A 5 LYS A 421 TYR A 425 -1 N ILE A 424 O ARG A 432 SHEET 3 A 5 GLN A 505 ARG A 510 1 O LEU A 508 N TYR A 425 SHEET 4 A 5 PHE A 461 SER A 467 -1 N TRP A 464 O PHE A 507 SHEET 5 A 5 LEU A 470 GLN A 473 -1 O LEU A 472 N ILE A 465 SHEET 1 B 4 ALA A 638 PHE A 645 0 SHEET 2 B 4 VAL A 655 ASN A 663 -1 O VAL A 660 N PHE A 640 SHEET 3 B 4 GLY A 666 ASN A 671 -1 O HIS A 668 N GLY A 661 SHEET 4 B 4 LEU A 677 LYS A 682 -1 O LEU A 678 N LEU A 669 SHEET 1 C 3 PHE A 686 LEU A 690 0 SHEET 2 C 3 CYS A 696 SER A 701 -1 O HIS A 700 N MET A 687 SHEET 3 C 3 SER A 707 HIS A 711 -1 O PHE A 708 N ILE A 699 SHEET 1 D 5 TYR C 431 GLU C 435 0 SHEET 2 D 5 LYS C 421 TYR C 425 -1 N ILE C 424 O ARG C 432 SHEET 3 D 5 GLN C 505 ARG C 510 1 O LEU C 506 N TYR C 425 SHEET 4 D 5 PHE C 461 SER C 467 -1 N TRP C 464 O PHE C 507 SHEET 5 D 5 LEU C 470 GLN C 473 -1 O LEU C 472 N ILE C 465 SHEET 1 E 4 ALA C 638 ILE C 644 0 SHEET 2 E 4 ILE C 656 VAL C 662 -1 O VAL C 660 N PHE C 640 SHEET 3 E 4 GLY C 666 ASN C 671 -1 O HIS C 668 N GLY C 661 SHEET 4 E 4 LEU C 677 LYS C 682 -1 O LEU C 678 N LEU C 669 SHEET 1 F 3 PHE C 686 LEU C 690 0 SHEET 2 F 3 CYS C 696 SER C 701 -1 O HIS C 700 N MET C 687 SHEET 3 F 3 SER C 707 HIS C 711 -1 O PHE C 708 N ILE C 699 CRYST1 73.050 76.820 79.180 90.00 113.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013689 0.000000 0.005986 0.00000 SCALE2 0.000000 0.013017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013784 0.00000