data_3U8T # _entry.id 3U8T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3U8T RCSB RCSB068450 WWPDB D_1000068450 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U69 . unspecified PDB 3U8O . unspecified PDB 3U8R . unspecified # _pdbx_database_status.entry_id 3U8T _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Figueiredo, A.C.' 1 'Clement, C.C.' 2 'Philipp, M.' 3 'Pereira, P.J.B.' 4 # _citation.id primary _citation.title 'Rational design and characterization of d-phe-pro-d-arg-derived direct thrombin inhibitors.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e34354 _citation.page_last e34354 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22457833 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0034354 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Figueiredo, A.C.' 1 ? primary 'Clement, C.C.' 2 ? primary 'Zakia, S.' 3 ? primary 'Gingold, J.' 4 ? primary 'Philipp, M.' 5 ? primary 'Pereira, P.J.' 6 ? # _cell.entry_id 3U8T _cell.length_a 51.800 _cell.length_b 77.100 _cell.length_c 83.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3U8T _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 3188.627 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn 'D-PHE-PRO-D-ARG-CYS DIRECT THROMBIN INHIBITOR' 520.648 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 6 non-polymer syn 'IODIDE ION' 126.904 1 ? ? ? ? 7 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 8 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 9 water nat water 18.015 265 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 Prothrombin 2 Prothrombin # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ADCGLRPLFEKKSLEDKTERELLESYI ADCGLRPLFEKKSLEDKTERELLESYI L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes '(DPN)P(DAR)C(NH2)' FPRCX I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 CYS n 1 4 GLY n 1 5 LEU n 1 6 ARG n 1 7 PRO n 1 8 LEU n 1 9 PHE n 1 10 GLU n 1 11 LYS n 1 12 LYS n 1 13 SER n 1 14 LEU n 1 15 GLU n 1 16 ASP n 1 17 LYS n 1 18 THR n 1 19 GLU n 1 20 ARG n 1 21 GLU n 1 22 LEU n 1 23 LEU n 1 24 GLU n 1 25 SER n 1 26 TYR n 1 27 ILE n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 DPN n 3 2 PRO n 3 3 DAR n 3 4 CYS n 3 5 NH2 n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 ADCGLRPLFEKKSLEDKTERELLESYI 334 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQF ; 364 ? 3 PDB 3U8T 3U8T 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3U8T L 1 ? 27 ? P00734 334 ? 360 ? 291 317 2 2 3U8T H 1 ? 257 ? P00734 364 ? 622 ? 321 577 3 3 3U8T I 1 ? 5 ? 3U8T 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAR 'D-peptide linking' . D-ARGININE ? 'C6 H15 N4 O2 1' 175.209 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3U8T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;50mM Tris, 50mM Bicine, 30mM NaF, 30mM NaBr, 30mM NaI, 11.5% MPD, 11.5% PEG-1000, 11.5% PEG-3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 8.5 ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond (111), Ge(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3U8T _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 34.995 _reflns.d_resolution_high 1.861 _reflns.number_obs 28722 _reflns.number_all 28722 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI 16.000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.860 1.960 100.000 0.181 0.181 4.100 5.600 ? ? ? ? ? ? 1 2 1.960 2.080 100.000 0.141 0.141 5.200 5.900 ? ? ? ? ? ? 1 3 2.080 2.220 100.000 0.112 0.112 6.400 5.900 ? ? ? ? ? ? 1 4 2.220 2.400 100.000 0.096 0.096 7.000 5.900 ? ? ? ? ? ? 1 5 2.400 2.630 100.000 0.084 0.084 7.900 5.900 ? ? ? ? ? ? 1 6 2.630 2.940 100.000 0.072 0.072 8.800 5.900 ? ? ? ? ? ? 1 7 2.940 3.400 100.000 0.062 0.062 9.800 5.800 ? ? ? ? ? ? 1 8 3.400 4.160 100.000 0.054 0.054 10.500 5.700 ? ? ? ? ? ? 1 9 4.160 5.890 99.900 0.052 0.052 10.500 5.500 ? ? ? ? ? ? 1 10 5.890 34.995 97.900 0.060 0.060 8.600 4.900 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3U8T _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 28671 _refine.ls_number_reflns_all 28671 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.995 _refine.ls_d_res_high 1.861 _refine.ls_percent_reflns_obs 99.90 _refine.ls_R_factor_obs 0.1551 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1530 _refine.ls_R_factor_R_free 0.1950 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.95 _refine.ls_number_reflns_R_free 1420 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.270 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.4728 _refine.aniso_B[2][2] 0.7888 _refine.aniso_B[3][3] -2.2615 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.354 _refine.solvent_model_param_bsol 36.153 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.pdbx_overall_phase_error 16.81 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3U8T _refine_analyze.Luzzati_coordinate_error_obs 0.171 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2276 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 265 _refine_hist.number_atoms_total 2566 _refine_hist.d_res_high 1.861 _refine_hist.d_res_low 34.995 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.018 ? ? 2412 'X-RAY DIFFRACTION' ? f_angle_d 1.742 ? ? 3268 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.002 ? ? 941 'X-RAY DIFFRACTION' ? f_chiral_restr 0.137 ? ? 344 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 414 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8610 1.9275 2698 0.1703 100.00 0.2365 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.9275 2.0047 2637 0.1492 100.00 0.2051 . . 153 . . . . 'X-RAY DIFFRACTION' . 2.0047 2.0959 2667 0.1390 100.00 0.1979 . . 154 . . . . 'X-RAY DIFFRACTION' . 2.0959 2.2064 2708 0.1409 100.00 0.1834 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.2064 2.3446 2714 0.1433 100.00 0.1797 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.3446 2.5256 2706 0.1521 100.00 0.1853 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.5256 2.7797 2737 0.1604 100.00 0.2235 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.7797 3.1817 2746 0.1681 100.00 0.2110 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.1817 4.0077 2785 0.1439 100.00 0.1880 . . 132 . . . . 'X-RAY DIFFRACTION' . 4.0077 35.0010 2853 0.1590 99.00 0.1815 . . 169 . . . . # _struct.entry_id 3U8T _struct.title 'Human thrombin complexed with D-Phe-Pro-D-Arg-Cys' _struct.pdbx_descriptor 'Thrombin light chain (E.C.3.4.21.5), Thrombin heavy chain (E.C.3.4.21.5), D-Phe-Pro-D-Arg-Cys peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3U8T _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 9 ? J N N 9 ? K N N 9 ? # loop_ _struct_biol.id _struct_biol.details 2 ? 3 ? 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 9 ? SER A 13 ? PHE L 299 SER L 303 5 ? 5 HELX_P HELX_P2 2 THR A 18 ? TYR A 26 ? THR L 308 TYR L 316 1 ? 9 HELX_P HELX_P3 3 ALA B 41 ? CYS B 44 ? ALA H 361 CYS H 364 5 ? 4 HELX_P HELX_P4 4 PRO B 48 ? ASP B 51 ? PRO H 368 ASP H 371 5 ? 4 HELX_P HELX_P5 5 THR B 55 ? ASN B 57 ? THR H 375 ASN H 377 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP H 442 LEU H 450 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? SER B 176 ? GLU H 489 SER H 496 1 ? 8 HELX_P HELX_P8 8 LYS B 191 ? GLY B 195 ? LYS H 511 GLY H 515 5 ? 5 HELX_P HELX_P9 9 LEU B 246 ? PHE B 257 ? LEU H 566 PHE H 577 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 293 H CYS 439 1_555 ? ? ? ? ? ? ? 2.058 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 348 H CYS 364 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 493 H CYS 507 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 521 H CYS 551 1_555 ? ? ? ? ? ? ? 2.063 ? ? covale1 covale one ? B ASN 53 ND2 ? ? ? 1_555 D NAG . C1 ? ? H ASN 373 H NAG 601 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale2 covale both ? C DPN 1 C ? ? ? 1_555 C PRO 2 N ? ? I DPN 1 I PRO 2 1_555 ? ? ? ? ? ? ? 1.348 sing ? covale3 covale both ? C PRO 2 C ? ? ? 1_555 C DAR 3 N ? ? I PRO 2 I DAR 3 1_555 ? ? ? ? ? ? ? 1.340 sing ? covale4 covale both ? C DAR 3 C ? ? ? 1_555 C CYS 4 N ? ? I DAR 3 I CYS 4 1_555 ? ? ? ? ? ? ? 1.338 sing ? covale5 covale both ? C CYS 4 C ? ? ? 1_555 C NH2 5 N ? ? I CYS 4 I NH2 5 1_555 ? ? ? ? ? ? ? 1.446 sing ? metalc1 metalc ? ? B ARG 233 O ? ? ? 1_555 E NA . NA ? ? H ARG 553 H NA 602 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc2 metalc ? ? B LYS 236 O ? ? ? 1_555 E NA . NA ? ? H LYS 556 H NA 602 1_555 ? ? ? ? ? ? ? 2.479 ? ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 602 H HOH 706 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 602 H HOH 714 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 602 H HOH 722 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 602 H HOH 738 1_555 ? ? ? ? ? ? ? 2.293 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 342 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 343 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.88 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER H 325 ASP H 326 A 2 GLN B 161 ? PRO B 166 ? GLN H 481 PRO H 486 A 3 LYS B 135 ? GLY B 140 ? LYS H 455 GLY H 460 A 4 PRO B 208 ? LYS B 212 ? PRO H 528 LYS H 532 A 5 TRP B 219 ? TRP B 227 ? TRP H 539 TRP H 547 A 6 GLY B 238 ? HIS B 242 ? GLY H 558 HIS H 562 A 7 MET B 185 ? ALA B 188 ? MET H 505 ALA H 508 B 1 LYS B 77 ? SER B 79 ? LYS H 397 SER H 399 B 2 LEU B 59 ? ILE B 63 ? LEU H 379 ILE H 383 B 3 GLN B 15 ? ARG B 20 ? GLN H 335 ARG H 340 B 4 GLU B 25 ? LEU B 32 ? GLU H 345 LEU H 352 B 5 TRP B 37 ? THR B 40 ? TRP H 357 THR H 360 B 6 ALA B 101 ? LEU B 105 ? ALA H 421 LEU H 425 B 7 LEU B 81 ? ILE B 86 ? LEU H 401 ILE H 406 C 1 LEU B 46 ? TYR B 47 ? LEU H 366 TYR H 367 C 2 LYS B 52 ? ASN B 53 ? LYS H 372 ASN H 373 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER H 325 O VAL B 162 ? O VAL H 482 A 2 3 O VAL B 163 ? O VAL H 483 N VAL B 138 ? N VAL H 458 A 3 4 N ARG B 137 ? N ARG H 457 O VAL B 210 ? O VAL H 530 A 4 5 N MET B 211 ? N MET H 531 O TYR B 220 ? O TYR H 540 A 5 6 N TRP B 227 ? N TRP H 547 O PHE B 239 ? O PHE H 559 A 6 7 O TYR B 240 ? O TYR H 560 N PHE B 186 ? N PHE H 506 B 1 2 O LYS B 77 ? O LYS H 397 N ILE B 63 ? N ILE H 383 B 2 3 O LEU B 60 ? O LEU H 380 N PHE B 19 ? N PHE H 339 B 3 4 N ARG B 20 ? N ARG H 340 O GLU B 25 ? O GLU H 345 B 4 5 N SER B 31 ? N SER H 351 O LEU B 39 ? O LEU H 359 B 5 6 N VAL B 38 ? N VAL H 358 O MET B 103 ? O MET H 423 B 6 7 O LYS B 104 ? O LYS H 424 N GLU B 82 ? N GLU H 402 C 1 2 N TYR B 47 ? N TYR H 367 O LYS B 52 ? O LYS H 372 # _atom_sites.entry_id 3U8T _atom_sites.fract_transf_matrix[1][1] 0.019305 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011986 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL I N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 291 291 ALA ALA L . n A 1 2 ASP 2 292 292 ASP ASP L . n A 1 3 CYS 3 293 293 CYS CYS L . n A 1 4 GLY 4 294 294 GLY GLY L . n A 1 5 LEU 5 295 295 LEU LEU L . n A 1 6 ARG 6 296 296 ARG ARG L . n A 1 7 PRO 7 297 297 PRO PRO L . n A 1 8 LEU 8 298 298 LEU LEU L . n A 1 9 PHE 9 299 299 PHE PHE L . n A 1 10 GLU 10 300 300 GLU GLU L . n A 1 11 LYS 11 301 301 LYS LYS L . n A 1 12 LYS 12 302 302 LYS LYS L . n A 1 13 SER 13 303 303 SER SER L . n A 1 14 LEU 14 304 304 LEU LEU L . n A 1 15 GLU 15 305 305 GLU GLU L . n A 1 16 ASP 16 306 306 ASP ASP L . n A 1 17 LYS 17 307 307 LYS LYS L . n A 1 18 THR 18 308 308 THR THR L . n A 1 19 GLU 19 309 309 GLU GLU L . n A 1 20 ARG 20 310 310 ARG ARG L . n A 1 21 GLU 21 311 311 GLU GLU L . n A 1 22 LEU 22 312 312 LEU LEU L . n A 1 23 LEU 23 313 313 LEU LEU L . n A 1 24 GLU 24 314 314 GLU GLU L . n A 1 25 SER 25 315 315 SER SER L . n A 1 26 TYR 26 316 316 TYR TYR L . n A 1 27 ILE 27 317 317 ILE ILE L . n B 2 1 ILE 1 321 321 ILE ILE H . n B 2 2 VAL 2 322 322 VAL VAL H . n B 2 3 GLU 3 323 323 GLU GLU H . n B 2 4 GLY 4 324 324 GLY GLY H . n B 2 5 SER 5 325 325 SER SER H . n B 2 6 ASP 6 326 326 ASP ASP H . n B 2 7 ALA 7 327 327 ALA ALA H . n B 2 8 GLU 8 328 328 GLU GLU H . n B 2 9 ILE 9 329 329 ILE ILE H . n B 2 10 GLY 10 330 330 GLY GLY H . n B 2 11 MET 11 331 331 MET MET H . n B 2 12 SER 12 332 332 SER SER H . n B 2 13 PRO 13 333 333 PRO PRO H . n B 2 14 TRP 14 334 334 TRP TRP H . n B 2 15 GLN 15 335 335 GLN GLN H . n B 2 16 VAL 16 336 336 VAL VAL H . n B 2 17 MET 17 337 337 MET MET H . n B 2 18 LEU 18 338 338 LEU LEU H . n B 2 19 PHE 19 339 339 PHE PHE H . n B 2 20 ARG 20 340 340 ARG ARG H . n B 2 21 LYS 21 341 341 LYS LYS H . n B 2 22 SER 22 342 342 SER SER H . n B 2 23 PRO 23 343 343 PRO PRO H . n B 2 24 GLN 24 344 344 GLN GLN H . n B 2 25 GLU 25 345 345 GLU GLU H . n B 2 26 LEU 26 346 346 LEU LEU H . n B 2 27 LEU 27 347 347 LEU LEU H . n B 2 28 CYS 28 348 348 CYS CYS H . n B 2 29 GLY 29 349 349 GLY GLY H . n B 2 30 ALA 30 350 350 ALA ALA H . n B 2 31 SER 31 351 351 SER SER H . n B 2 32 LEU 32 352 352 LEU LEU H . n B 2 33 ILE 33 353 353 ILE ILE H . n B 2 34 SER 34 354 354 SER SER H . n B 2 35 ASP 35 355 355 ASP ASP H . n B 2 36 ARG 36 356 356 ARG ARG H . n B 2 37 TRP 37 357 357 TRP TRP H . n B 2 38 VAL 38 358 358 VAL VAL H . n B 2 39 LEU 39 359 359 LEU LEU H . n B 2 40 THR 40 360 360 THR THR H . n B 2 41 ALA 41 361 361 ALA ALA H . n B 2 42 ALA 42 362 362 ALA ALA H . n B 2 43 HIS 43 363 363 HIS HIS H . n B 2 44 CYS 44 364 364 CYS CYS H . n B 2 45 LEU 45 365 365 LEU LEU H . n B 2 46 LEU 46 366 366 LEU LEU H . n B 2 47 TYR 47 367 367 TYR TYR H . n B 2 48 PRO 48 368 368 PRO PRO H . n B 2 49 PRO 49 369 369 PRO PRO H . n B 2 50 TRP 50 370 370 TRP TRP H . n B 2 51 ASP 51 371 371 ASP ASP H . n B 2 52 LYS 52 372 372 LYS LYS H . n B 2 53 ASN 53 373 373 ASN ASN H . n B 2 54 PHE 54 374 374 PHE PHE H . n B 2 55 THR 55 375 375 THR THR H . n B 2 56 GLU 56 376 376 GLU GLU H . n B 2 57 ASN 57 377 377 ASN ASN H . n B 2 58 ASP 58 378 378 ASP ASP H . n B 2 59 LEU 59 379 379 LEU LEU H . n B 2 60 LEU 60 380 380 LEU LEU H . n B 2 61 VAL 61 381 381 VAL VAL H . n B 2 62 ARG 62 382 382 ARG ARG H . n B 2 63 ILE 63 383 383 ILE ILE H . n B 2 64 GLY 64 384 384 GLY GLY H . n B 2 65 LYS 65 385 385 LYS LYS H . n B 2 66 HIS 66 386 386 HIS HIS H . n B 2 67 SER 67 387 387 SER SER H . n B 2 68 ARG 68 388 388 ARG ARG H . n B 2 69 THR 69 389 389 THR THR H . n B 2 70 ARG 70 390 390 ARG ARG H . n B 2 71 TYR 71 391 391 TYR TYR H . n B 2 72 GLU 72 392 392 GLU GLU H . n B 2 73 ARG 73 393 393 ARG ARG H . n B 2 74 ASN 74 394 394 ASN ASN H . n B 2 75 ILE 75 395 395 ILE ILE H . n B 2 76 GLU 76 396 396 GLU GLU H . n B 2 77 LYS 77 397 397 LYS LYS H . n B 2 78 ILE 78 398 398 ILE ILE H . n B 2 79 SER 79 399 399 SER SER H . n B 2 80 MET 80 400 400 MET MET H . n B 2 81 LEU 81 401 401 LEU LEU H . n B 2 82 GLU 82 402 402 GLU GLU H . n B 2 83 LYS 83 403 403 LYS LYS H . n B 2 84 ILE 84 404 404 ILE ILE H . n B 2 85 TYR 85 405 405 TYR TYR H . n B 2 86 ILE 86 406 406 ILE ILE H . n B 2 87 HIS 87 407 407 HIS HIS H . n B 2 88 PRO 88 408 408 PRO PRO H . n B 2 89 ARG 89 409 409 ARG ARG H . n B 2 90 TYR 90 410 410 TYR TYR H . n B 2 91 ASN 91 411 411 ASN ASN H . n B 2 92 TRP 92 412 412 TRP TRP H . n B 2 93 ARG 93 413 413 ARG ARG H . n B 2 94 GLU 94 414 414 GLU GLU H . n B 2 95 ASN 95 415 415 ASN ASN H . n B 2 96 LEU 96 416 416 LEU LEU H . n B 2 97 ASP 97 417 417 ASP ASP H . n B 2 98 ARG 98 418 418 ARG ARG H . n B 2 99 ASP 99 419 419 ASP ASP H . n B 2 100 ILE 100 420 420 ILE ILE H . n B 2 101 ALA 101 421 421 ALA ALA H . n B 2 102 LEU 102 422 422 LEU LEU H . n B 2 103 MET 103 423 423 MET MET H . n B 2 104 LYS 104 424 424 LYS LYS H . n B 2 105 LEU 105 425 425 LEU LEU H . n B 2 106 LYS 106 426 426 LYS LYS H . n B 2 107 LYS 107 427 427 LYS LYS H . n B 2 108 PRO 108 428 428 PRO PRO H . n B 2 109 VAL 109 429 429 VAL VAL H . n B 2 110 ALA 110 430 430 ALA ALA H . n B 2 111 PHE 111 431 431 PHE PHE H . n B 2 112 SER 112 432 432 SER SER H . n B 2 113 ASP 113 433 433 ASP ASP H . n B 2 114 TYR 114 434 434 TYR TYR H . n B 2 115 ILE 115 435 435 ILE ILE H . n B 2 116 HIS 116 436 436 HIS HIS H . n B 2 117 PRO 117 437 437 PRO PRO H . n B 2 118 VAL 118 438 438 VAL VAL H . n B 2 119 CYS 119 439 439 CYS CYS H . n B 2 120 LEU 120 440 440 LEU LEU H . n B 2 121 PRO 121 441 441 PRO PRO H . n B 2 122 ASP 122 442 442 ASP ASP H . n B 2 123 ARG 123 443 443 ARG ARG H . n B 2 124 GLU 124 444 444 GLU GLU H . n B 2 125 THR 125 445 445 THR THR H . n B 2 126 ALA 126 446 446 ALA ALA H . n B 2 127 ALA 127 447 447 ALA ALA H . n B 2 128 SER 128 448 448 SER SER H . n B 2 129 LEU 129 449 449 LEU LEU H . n B 2 130 LEU 130 450 450 LEU LEU H . n B 2 131 GLN 131 451 451 GLN GLN H . n B 2 132 ALA 132 452 452 ALA ALA H . n B 2 133 GLY 133 453 453 GLY GLY H . n B 2 134 TYR 134 454 454 TYR TYR H . n B 2 135 LYS 135 455 455 LYS LYS H . n B 2 136 GLY 136 456 456 GLY GLY H . n B 2 137 ARG 137 457 457 ARG ARG H . n B 2 138 VAL 138 458 458 VAL VAL H . n B 2 139 THR 139 459 459 THR THR H . n B 2 140 GLY 140 460 460 GLY GLY H . n B 2 141 TRP 141 461 461 TRP TRP H . n B 2 142 GLY 142 462 462 GLY GLY H . n B 2 143 ASN 143 463 463 ASN ASN H . n B 2 144 LEU 144 464 464 LEU LEU H . n B 2 145 LYS 145 465 465 LYS LYS H . n B 2 146 GLU 146 466 466 GLU GLU H . n B 2 147 THR 147 467 ? ? ? H . n B 2 148 TRP 148 468 ? ? ? H . n B 2 149 THR 149 469 ? ? ? H . n B 2 150 ALA 150 470 ? ? ? H . n B 2 151 ASN 151 471 ? ? ? H . n B 2 152 VAL 152 472 ? ? ? H . n B 2 153 GLY 153 473 ? ? ? H . n B 2 154 LYS 154 474 ? ? ? H . n B 2 155 GLY 155 475 475 GLY GLY H . n B 2 156 GLN 156 476 476 GLN GLN H . n B 2 157 PRO 157 477 477 PRO PRO H . n B 2 158 SER 158 478 478 SER SER H . n B 2 159 VAL 159 479 479 VAL VAL H . n B 2 160 LEU 160 480 480 LEU LEU H . n B 2 161 GLN 161 481 481 GLN GLN H . n B 2 162 VAL 162 482 482 VAL VAL H . n B 2 163 VAL 163 483 483 VAL VAL H . n B 2 164 ASN 164 484 484 ASN ASN H . n B 2 165 LEU 165 485 485 LEU LEU H . n B 2 166 PRO 166 486 486 PRO PRO H . n B 2 167 ILE 167 487 487 ILE ILE H . n B 2 168 VAL 168 488 488 VAL VAL H . n B 2 169 GLU 169 489 489 GLU GLU H . n B 2 170 ARG 170 490 490 ARG ARG H . n B 2 171 PRO 171 491 491 PRO PRO H . n B 2 172 VAL 172 492 492 VAL VAL H . n B 2 173 CYS 173 493 493 CYS CYS H . n B 2 174 LYS 174 494 494 LYS LYS H . n B 2 175 ASP 175 495 495 ASP ASP H . n B 2 176 SER 176 496 496 SER SER H . n B 2 177 THR 177 497 497 THR THR H . n B 2 178 ARG 178 498 498 ARG ARG H . n B 2 179 ILE 179 499 499 ILE ILE H . n B 2 180 ARG 180 500 500 ARG ARG H . n B 2 181 ILE 181 501 501 ILE ILE H . n B 2 182 THR 182 502 502 THR THR H . n B 2 183 ASP 183 503 503 ASP ASP H . n B 2 184 ASN 184 504 504 ASN ASN H . n B 2 185 MET 185 505 505 MET MET H . n B 2 186 PHE 186 506 506 PHE PHE H . n B 2 187 CYS 187 507 507 CYS CYS H . n B 2 188 ALA 188 508 508 ALA ALA H . n B 2 189 GLY 189 509 509 GLY GLY H . n B 2 190 TYR 190 510 510 TYR TYR H . n B 2 191 LYS 191 511 511 LYS LYS H . n B 2 192 PRO 192 512 512 PRO PRO H . n B 2 193 ASP 193 513 513 ASP ASP H . n B 2 194 GLU 194 514 514 GLU GLU H . n B 2 195 GLY 195 515 515 GLY GLY H . n B 2 196 LYS 196 516 516 LYS LYS H . n B 2 197 ARG 197 517 517 ARG ARG H . n B 2 198 GLY 198 518 518 GLY GLY H . n B 2 199 ASP 199 519 519 ASP ASP H . n B 2 200 ALA 200 520 520 ALA ALA H . n B 2 201 CYS 201 521 521 CYS CYS H . n B 2 202 GLU 202 522 522 GLU GLU H . n B 2 203 GLY 203 523 523 GLY GLY H . n B 2 204 ASP 204 524 524 ASP ASP H . n B 2 205 SER 205 525 525 SER SER H . n B 2 206 GLY 206 526 526 GLY GLY H . n B 2 207 GLY 207 527 527 GLY GLY H . n B 2 208 PRO 208 528 528 PRO PRO H . n B 2 209 PHE 209 529 529 PHE PHE H . n B 2 210 VAL 210 530 530 VAL VAL H . n B 2 211 MET 211 531 531 MET MET H . n B 2 212 LYS 212 532 532 LYS LYS H . n B 2 213 SER 213 533 533 SER SER H . n B 2 214 PRO 214 534 534 PRO PRO H . n B 2 215 PHE 215 535 535 PHE PHE H . n B 2 216 ASN 216 536 536 ASN ASN H . n B 2 217 ASN 217 537 537 ASN ASN H . n B 2 218 ARG 218 538 538 ARG ARG H . n B 2 219 TRP 219 539 539 TRP TRP H . n B 2 220 TYR 220 540 540 TYR TYR H . n B 2 221 GLN 221 541 541 GLN GLN H . n B 2 222 MET 222 542 542 MET MET H . n B 2 223 GLY 223 543 543 GLY GLY H . n B 2 224 ILE 224 544 544 ILE ILE H . n B 2 225 VAL 225 545 545 VAL VAL H . n B 2 226 SER 226 546 546 SER SER H . n B 2 227 TRP 227 547 547 TRP TRP H . n B 2 228 GLY 228 548 548 GLY GLY H . n B 2 229 GLU 229 549 549 GLU GLU H . n B 2 230 GLY 230 550 550 GLY GLY H . n B 2 231 CYS 231 551 551 CYS CYS H . n B 2 232 ASP 232 552 552 ASP ASP H . n B 2 233 ARG 233 553 553 ARG ARG H . n B 2 234 ASP 234 554 554 ASP ASP H . n B 2 235 GLY 235 555 555 GLY GLY H . n B 2 236 LYS 236 556 556 LYS LYS H . n B 2 237 TYR 237 557 557 TYR TYR H . n B 2 238 GLY 238 558 558 GLY GLY H . n B 2 239 PHE 239 559 559 PHE PHE H . n B 2 240 TYR 240 560 560 TYR TYR H . n B 2 241 THR 241 561 561 THR THR H . n B 2 242 HIS 242 562 562 HIS HIS H . n B 2 243 VAL 243 563 563 VAL VAL H . n B 2 244 PHE 244 564 564 PHE PHE H . n B 2 245 ARG 245 565 565 ARG ARG H . n B 2 246 LEU 246 566 566 LEU LEU H . n B 2 247 LYS 247 567 567 LYS LYS H . n B 2 248 LYS 248 568 568 LYS LYS H . n B 2 249 TRP 249 569 569 TRP TRP H . n B 2 250 ILE 250 570 570 ILE ILE H . n B 2 251 GLN 251 571 571 GLN GLN H . n B 2 252 LYS 252 572 572 LYS LYS H . n B 2 253 VAL 253 573 573 VAL VAL H . n B 2 254 ILE 254 574 574 ILE ILE H . n B 2 255 ASP 255 575 575 ASP ASP H . n B 2 256 GLN 256 576 576 GLN GLN H . n B 2 257 PHE 257 577 577 PHE PHE H . n B 2 258 GLY 258 578 ? ? ? H . n B 2 259 GLU 259 579 ? ? ? H . n C 3 1 DPN 1 1 1 DPN DPN I . n C 3 2 PRO 2 2 2 PRO PRO I . n C 3 3 DAR 3 3 3 DAR DAR I . n C 3 4 CYS 4 4 4 CYS CYS I . n C 3 5 NH2 5 5 5 NH2 CYS I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 601 1373 NAG NAG H . E 5 NA 1 602 1 NA NA H . F 6 IOD 1 603 2 IOD I H . G 7 CL 1 604 3 CL CL H . H 8 MPD 1 605 700 MPD MPD H . I 9 HOH 1 401 16 HOH HOH L . I 9 HOH 2 402 41 HOH HOH L . I 9 HOH 3 403 46 HOH HOH L . I 9 HOH 4 404 54 HOH HOH L . I 9 HOH 5 405 56 HOH HOH L . I 9 HOH 6 406 66 HOH HOH L . I 9 HOH 7 407 68 HOH HOH L . I 9 HOH 8 408 75 HOH HOH L . I 9 HOH 9 409 80 HOH HOH L . I 9 HOH 10 410 85 HOH HOH L . I 9 HOH 11 411 88 HOH HOH L . I 9 HOH 12 412 92 HOH HOH L . I 9 HOH 13 413 93 HOH HOH L . I 9 HOH 14 414 94 HOH HOH L . I 9 HOH 15 415 99 HOH HOH L . I 9 HOH 16 416 110 HOH HOH L . I 9 HOH 17 417 121 HOH HOH L . I 9 HOH 18 418 122 HOH HOH L . I 9 HOH 19 419 131 HOH HOH L . I 9 HOH 20 420 139 HOH HOH L . I 9 HOH 21 421 145 HOH HOH L . I 9 HOH 22 422 146 HOH HOH L . I 9 HOH 23 423 147 HOH HOH L . I 9 HOH 24 424 159 HOH HOH L . I 9 HOH 25 425 162 HOH HOH L . I 9 HOH 26 426 167 HOH HOH L . I 9 HOH 27 427 168 HOH HOH L . I 9 HOH 28 428 175 HOH HOH L . I 9 HOH 29 429 177 HOH HOH L . I 9 HOH 30 430 178 HOH HOH L . I 9 HOH 31 431 183 HOH HOH L . I 9 HOH 32 432 202 HOH HOH L . I 9 HOH 33 433 205 HOH HOH L . I 9 HOH 34 434 228 HOH HOH L . I 9 HOH 35 435 266 HOH HOH L . J 9 HOH 1 701 4 HOH HOH H . J 9 HOH 2 702 5 HOH HOH H . J 9 HOH 3 703 6 HOH HOH H . J 9 HOH 4 704 7 HOH HOH H . J 9 HOH 5 705 8 HOH HOH H . J 9 HOH 6 706 9 HOH HOH H . J 9 HOH 7 707 10 HOH HOH H . J 9 HOH 8 708 11 HOH HOH H . J 9 HOH 9 709 12 HOH HOH H . J 9 HOH 10 710 13 HOH HOH H . J 9 HOH 11 711 14 HOH HOH H . J 9 HOH 12 712 15 HOH HOH H . J 9 HOH 13 713 17 HOH HOH H . J 9 HOH 14 714 18 HOH HOH H . J 9 HOH 15 715 19 HOH HOH H . J 9 HOH 16 716 20 HOH HOH H . J 9 HOH 17 717 21 HOH HOH H . J 9 HOH 18 718 22 HOH HOH H . J 9 HOH 19 719 23 HOH HOH H . J 9 HOH 20 720 24 HOH HOH H . J 9 HOH 21 721 25 HOH HOH H . J 9 HOH 22 722 26 HOH HOH H . J 9 HOH 23 723 27 HOH HOH H . J 9 HOH 24 724 28 HOH HOH H . J 9 HOH 25 725 29 HOH HOH H . J 9 HOH 26 726 30 HOH HOH H . J 9 HOH 27 727 31 HOH HOH H . J 9 HOH 28 728 32 HOH HOH H . J 9 HOH 29 729 33 HOH HOH H . J 9 HOH 30 730 34 HOH HOH H . J 9 HOH 31 731 35 HOH HOH H . J 9 HOH 32 732 36 HOH HOH H . J 9 HOH 33 733 37 HOH HOH H . J 9 HOH 34 734 38 HOH HOH H . J 9 HOH 35 735 39 HOH HOH H . J 9 HOH 36 736 40 HOH HOH H . J 9 HOH 37 737 42 HOH HOH H . J 9 HOH 38 738 43 HOH HOH H . J 9 HOH 39 739 44 HOH HOH H . J 9 HOH 40 740 45 HOH HOH H . J 9 HOH 41 741 47 HOH HOH H . J 9 HOH 42 742 48 HOH HOH H . J 9 HOH 43 743 49 HOH HOH H . J 9 HOH 44 744 50 HOH HOH H . J 9 HOH 45 745 51 HOH HOH H . J 9 HOH 46 746 52 HOH HOH H . J 9 HOH 47 747 53 HOH HOH H . J 9 HOH 48 748 55 HOH HOH H . J 9 HOH 49 749 57 HOH HOH H . J 9 HOH 50 750 58 HOH HOH H . J 9 HOH 51 751 59 HOH HOH H . J 9 HOH 52 752 60 HOH HOH H . J 9 HOH 53 753 61 HOH HOH H . J 9 HOH 54 754 62 HOH HOH H . J 9 HOH 55 755 63 HOH HOH H . J 9 HOH 56 756 64 HOH HOH H . J 9 HOH 57 757 65 HOH HOH H . J 9 HOH 58 758 67 HOH HOH H . J 9 HOH 59 759 69 HOH HOH H . J 9 HOH 60 760 70 HOH HOH H . J 9 HOH 61 761 71 HOH HOH H . J 9 HOH 62 762 72 HOH HOH H . J 9 HOH 63 763 73 HOH HOH H . J 9 HOH 64 764 74 HOH HOH H . J 9 HOH 65 765 76 HOH HOH H . J 9 HOH 66 766 77 HOH HOH H . J 9 HOH 67 767 78 HOH HOH H . J 9 HOH 68 768 79 HOH HOH H . J 9 HOH 69 769 81 HOH HOH H . J 9 HOH 70 770 82 HOH HOH H . J 9 HOH 71 771 83 HOH HOH H . J 9 HOH 72 772 84 HOH HOH H . J 9 HOH 73 773 86 HOH HOH H . J 9 HOH 74 774 87 HOH HOH H . J 9 HOH 75 775 89 HOH HOH H . J 9 HOH 76 776 90 HOH HOH H . J 9 HOH 77 777 91 HOH HOH H . J 9 HOH 78 778 95 HOH HOH H . J 9 HOH 79 779 96 HOH HOH H . J 9 HOH 80 780 97 HOH HOH H . J 9 HOH 81 781 98 HOH HOH H . J 9 HOH 82 782 100 HOH HOH H . J 9 HOH 83 783 101 HOH HOH H . J 9 HOH 84 784 102 HOH HOH H . J 9 HOH 85 785 103 HOH HOH H . J 9 HOH 86 786 104 HOH HOH H . J 9 HOH 87 787 105 HOH HOH H . J 9 HOH 88 788 106 HOH HOH H . J 9 HOH 89 789 107 HOH HOH H . J 9 HOH 90 790 108 HOH HOH H . J 9 HOH 91 791 109 HOH HOH H . J 9 HOH 92 792 111 HOH HOH H . J 9 HOH 93 793 112 HOH HOH H . J 9 HOH 94 794 113 HOH HOH H . J 9 HOH 95 795 114 HOH HOH H . J 9 HOH 96 796 115 HOH HOH H . J 9 HOH 97 797 116 HOH HOH H . J 9 HOH 98 798 117 HOH HOH H . J 9 HOH 99 799 118 HOH HOH H . J 9 HOH 100 800 119 HOH HOH H . J 9 HOH 101 801 120 HOH HOH H . J 9 HOH 102 802 123 HOH HOH H . J 9 HOH 103 803 124 HOH HOH H . J 9 HOH 104 804 125 HOH HOH H . J 9 HOH 105 805 126 HOH HOH H . J 9 HOH 106 806 127 HOH HOH H . J 9 HOH 107 807 128 HOH HOH H . J 9 HOH 108 808 129 HOH HOH H . J 9 HOH 109 809 130 HOH HOH H . J 9 HOH 110 810 132 HOH HOH H . J 9 HOH 111 811 133 HOH HOH H . J 9 HOH 112 812 134 HOH HOH H . J 9 HOH 113 813 135 HOH HOH H . J 9 HOH 114 814 136 HOH HOH H . J 9 HOH 115 815 137 HOH HOH H . J 9 HOH 116 816 138 HOH HOH H . J 9 HOH 117 817 140 HOH HOH H . J 9 HOH 118 818 141 HOH HOH H . J 9 HOH 119 819 142 HOH HOH H . J 9 HOH 120 820 143 HOH HOH H . J 9 HOH 121 821 144 HOH HOH H . J 9 HOH 122 822 148 HOH HOH H . J 9 HOH 123 823 149 HOH HOH H . J 9 HOH 124 824 150 HOH HOH H . J 9 HOH 125 825 151 HOH HOH H . J 9 HOH 126 826 152 HOH HOH H . J 9 HOH 127 827 153 HOH HOH H . J 9 HOH 128 828 154 HOH HOH H . J 9 HOH 129 829 155 HOH HOH H . J 9 HOH 130 830 156 HOH HOH H . J 9 HOH 131 831 157 HOH HOH H . J 9 HOH 132 832 158 HOH HOH H . J 9 HOH 133 833 160 HOH HOH H . J 9 HOH 134 834 161 HOH HOH H . J 9 HOH 135 835 163 HOH HOH H . J 9 HOH 136 836 164 HOH HOH H . J 9 HOH 137 837 165 HOH HOH H . J 9 HOH 138 838 166 HOH HOH H . J 9 HOH 139 839 169 HOH HOH H . J 9 HOH 140 840 170 HOH HOH H . J 9 HOH 141 841 171 HOH HOH H . J 9 HOH 142 842 172 HOH HOH H . J 9 HOH 143 843 173 HOH HOH H . J 9 HOH 144 844 174 HOH HOH H . J 9 HOH 145 845 176 HOH HOH H . J 9 HOH 146 846 179 HOH HOH H . J 9 HOH 147 847 180 HOH HOH H . J 9 HOH 148 848 181 HOH HOH H . J 9 HOH 149 849 182 HOH HOH H . J 9 HOH 150 850 184 HOH HOH H . J 9 HOH 151 851 185 HOH HOH H . J 9 HOH 152 852 186 HOH HOH H . J 9 HOH 153 853 187 HOH HOH H . J 9 HOH 154 854 188 HOH HOH H . J 9 HOH 155 855 189 HOH HOH H . J 9 HOH 156 856 190 HOH HOH H . J 9 HOH 157 857 191 HOH HOH H . J 9 HOH 158 858 192 HOH HOH H . J 9 HOH 159 859 193 HOH HOH H . J 9 HOH 160 860 194 HOH HOH H . J 9 HOH 161 861 195 HOH HOH H . J 9 HOH 162 862 196 HOH HOH H . J 9 HOH 163 863 197 HOH HOH H . J 9 HOH 164 864 198 HOH HOH H . J 9 HOH 165 865 199 HOH HOH H . J 9 HOH 166 866 200 HOH HOH H . J 9 HOH 167 867 201 HOH HOH H . J 9 HOH 168 868 203 HOH HOH H . J 9 HOH 169 869 204 HOH HOH H . J 9 HOH 170 870 206 HOH HOH H . J 9 HOH 171 871 207 HOH HOH H . J 9 HOH 172 872 208 HOH HOH H . J 9 HOH 173 873 209 HOH HOH H . J 9 HOH 174 874 210 HOH HOH H . J 9 HOH 175 875 211 HOH HOH H . J 9 HOH 176 876 212 HOH HOH H . J 9 HOH 177 877 213 HOH HOH H . J 9 HOH 178 878 214 HOH HOH H . J 9 HOH 179 879 215 HOH HOH H . J 9 HOH 180 880 216 HOH HOH H . J 9 HOH 181 881 217 HOH HOH H . J 9 HOH 182 882 218 HOH HOH H . J 9 HOH 183 883 219 HOH HOH H . J 9 HOH 184 884 220 HOH HOH H . J 9 HOH 185 885 221 HOH HOH H . J 9 HOH 186 886 222 HOH HOH H . J 9 HOH 187 887 223 HOH HOH H . J 9 HOH 188 888 224 HOH HOH H . J 9 HOH 189 889 225 HOH HOH H . J 9 HOH 190 890 226 HOH HOH H . J 9 HOH 191 891 227 HOH HOH H . J 9 HOH 192 892 230 HOH HOH H . J 9 HOH 193 893 231 HOH HOH H . J 9 HOH 194 894 232 HOH HOH H . J 9 HOH 195 895 233 HOH HOH H . J 9 HOH 196 896 234 HOH HOH H . J 9 HOH 197 897 235 HOH HOH H . J 9 HOH 198 898 237 HOH HOH H . J 9 HOH 199 899 238 HOH HOH H . J 9 HOH 200 900 239 HOH HOH H . J 9 HOH 201 901 240 HOH HOH H . J 9 HOH 202 902 241 HOH HOH H . J 9 HOH 203 903 242 HOH HOH H . J 9 HOH 204 904 243 HOH HOH H . J 9 HOH 205 905 244 HOH HOH H . J 9 HOH 206 906 245 HOH HOH H . J 9 HOH 207 907 246 HOH HOH H . J 9 HOH 208 908 247 HOH HOH H . J 9 HOH 209 909 248 HOH HOH H . J 9 HOH 210 910 249 HOH HOH H . J 9 HOH 211 911 250 HOH HOH H . J 9 HOH 212 912 251 HOH HOH H . J 9 HOH 213 913 252 HOH HOH H . J 9 HOH 214 914 253 HOH HOH H . J 9 HOH 215 915 254 HOH HOH H . J 9 HOH 216 916 255 HOH HOH H . J 9 HOH 217 917 256 HOH HOH H . J 9 HOH 218 918 257 HOH HOH H . J 9 HOH 219 919 258 HOH HOH H . J 9 HOH 220 920 259 HOH HOH H . J 9 HOH 221 921 260 HOH HOH H . J 9 HOH 222 922 261 HOH HOH H . J 9 HOH 223 923 262 HOH HOH H . J 9 HOH 224 924 263 HOH HOH H . J 9 HOH 225 925 264 HOH HOH H . J 9 HOH 226 926 265 HOH HOH H . J 9 HOH 227 927 267 HOH HOH H . K 9 HOH 1 101 229 HOH HOH I . K 9 HOH 2 102 236 HOH HOH I . K 9 HOH 3 103 268 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_001092 _pdbx_molecule_features.name 'D-phenylalanyl-L-prolyl-N~5~-[amino(iminio)methyl]-D-ornithyl-L-cysteinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class 'Thrombin inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001092 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 373 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4280 ? 1 MORE -42 ? 1 'SSA (A^2)' 12450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ARG 233 ? H ARG 553 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? B LYS 236 ? H LYS 556 ? 1_555 89.6 ? 2 O ? B ARG 233 ? H ARG 553 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 706 ? 1_555 157.0 ? 3 O ? B LYS 236 ? H LYS 556 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 706 ? 1_555 71.4 ? 4 O ? B ARG 233 ? H ARG 553 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 714 ? 1_555 100.0 ? 5 O ? B LYS 236 ? H LYS 556 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 714 ? 1_555 80.7 ? 6 O ? J HOH . ? H HOH 706 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 714 ? 1_555 89.7 ? 7 O ? B ARG 233 ? H ARG 553 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 722 ? 1_555 86.8 ? 8 O ? B LYS 236 ? H LYS 556 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 722 ? 1_555 91.6 ? 9 O ? J HOH . ? H HOH 706 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 722 ? 1_555 81.1 ? 10 O ? J HOH . ? H HOH 714 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 722 ? 1_555 169.6 ? 11 O ? B ARG 233 ? H ARG 553 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 738 ? 1_555 103.2 ? 12 O ? B LYS 236 ? H LYS 556 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 738 ? 1_555 166.8 ? 13 O ? J HOH . ? H HOH 706 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 738 ? 1_555 95.5 ? 14 O ? J HOH . ? H HOH 714 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 738 ? 1_555 99.9 ? 15 O ? J HOH . ? H HOH 722 ? 1_555 NA ? E NA . ? H NA 602 ? 1_555 O ? J HOH . ? H HOH 738 ? 1_555 86.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-11 2 'Structure model' 1 1 2012-12-12 3 'Structure model' 1 2 2013-06-05 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.conn_type_id' 17 4 'Structure model' '_struct_conn.id' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.pdbx_value_order' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 12.9859 -4.2359 -23.9412 0.0947 0.0820 0.0398 -0.0088 -0.0360 0.0394 1.1527 1.2244 1.1902 0.0073 -0.3263 -0.3266 0.0896 0.3851 0.0072 -0.4390 -0.0169 -0.0150 0.0733 -0.4764 -0.0137 'X-RAY DIFFRACTION' 2 ? refined 15.4009 -12.9934 -10.6623 0.0485 0.0475 0.0387 -0.0147 -0.0240 0.0111 1.0320 1.3493 1.2841 -0.0212 -0.0933 -0.2450 0.0020 -0.0149 -0.1409 -0.0067 0.0344 -0.0740 0.1900 -0.1061 -0.0191 'X-RAY DIFFRACTION' 3 ? refined 30.8759 -1.4843 -14.1633 0.0563 0.1630 0.3188 -0.0305 -0.0072 -0.0635 2.7156 3.0740 4.7164 0.1136 1.0332 -1.3740 0.0557 0.1756 0.4195 0.0745 -0.0625 -0.4200 -0.3592 0.7138 0.1333 'X-RAY DIFFRACTION' 4 ? refined 5.6342 -0.6735 -1.7428 0.0890 0.1217 0.0640 0.0192 0.0358 -0.0129 2.2117 2.6531 1.9137 -0.2270 0.1858 -0.9279 0.0297 -0.0921 0.1838 0.3455 0.0864 0.3352 -0.1563 -0.3811 -0.0534 'X-RAY DIFFRACTION' 5 ? refined 15.5976 -20.5571 -20.8418 0.3235 0.4266 0.4175 0.0170 -0.0040 -0.0566 4.9358 4.0983 2.2287 -4.3538 -2.6932 1.9346 0.2854 0.7152 0.1897 -0.5185 -0.0061 0.1516 0.0501 -0.2284 -0.2031 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain H and resid 321:406)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain H and resid 407:565)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain H and resid 566:577)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain L and resid 291:317)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain I and resid 1:4)' # _pdbx_phasing_MR.entry_id 3U8T _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 34.660 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 34.990 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 34.990 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O H HOH 894 ? ? O H HOH 904 ? ? 2.14 2 1 NE2 H GLN 335 ? ? O H HOH 915 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 NE _pdbx_validate_rmsd_bond.auth_asym_id_1 I _pdbx_validate_rmsd_bond.auth_comp_id_1 DAR _pdbx_validate_rmsd_bond.auth_seq_id_1 3 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CZ _pdbx_validate_rmsd_bond.auth_asym_id_2 I _pdbx_validate_rmsd_bond.auth_comp_id_2 DAR _pdbx_validate_rmsd_bond.auth_seq_id_2 3 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.424 _pdbx_validate_rmsd_bond.bond_target_value 1.326 _pdbx_validate_rmsd_bond.bond_deviation 0.098 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 I _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 I _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 I _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.56 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.36 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 299 ? ? -128.14 -89.71 2 1 GLU H 345 ? ? -170.64 149.50 3 1 TYR H 367 ? ? -155.83 80.53 4 1 ASN H 373 ? ? -160.66 76.14 5 1 HIS H 386 ? ? -123.94 -55.96 6 1 ASN H 394 ? ? 69.48 -1.15 7 1 ILE H 395 ? ? -122.25 -51.85 8 1 ASN H 415 ? ? -143.47 14.04 9 1 DAR I 3 ? ? -34.92 -52.79 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H THR 467 ? B THR 147 2 1 Y 1 H TRP 468 ? B TRP 148 3 1 Y 1 H THR 469 ? B THR 149 4 1 Y 1 H ALA 470 ? B ALA 150 5 1 Y 1 H ASN 471 ? B ASN 151 6 1 Y 1 H VAL 472 ? B VAL 152 7 1 Y 1 H GLY 473 ? B GLY 153 8 1 Y 1 H LYS 474 ? B LYS 154 9 1 Y 1 H GLY 578 ? B GLY 258 10 1 Y 1 H GLU 579 ? B GLU 259 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 'SODIUM ION' NA 6 'IODIDE ION' IOD 7 'CHLORIDE ION' CL 8 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 9 water HOH #