HEADER CONTRACTILE PROTEIN, PROTEIN BINDING 20-OCT-11 3U9Z TITLE CRYSTAL STRUCTURE BETWEEN ACTIN AND A PROTEIN CONSTRUCT CONTAINING THE TITLE 2 FIRST BETA-THYMOSIN DOMAIN OF DROSOPHILA CIBOULOT (RESIDUES 2-58) TITLE 3 WITH THE THREE MUTATIONS N26D/Q27K/D28S COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CIBOULOT, ISOFORM A; COMPND 7 CHAIN: C; COMPND 8 FRAGMENT: UNP RESIDUES 2-58; COMPND 9 SYNONYM: CIBOULOT, ISOFORM B, EG:EG0007.11 PROTEIN, RE50273P; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC SOURCE 4 RABBIT,RABBITS; SOURCE 5 ORGANISM_TAXID: 9986; SOURCE 6 OTHER_DETAILS: ORGAN: ALPHA SKELETAL MUSCLE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 9 ORGANISM_COMMON: FRUIT FLY; SOURCE 10 ORGANISM_TAXID: 7227; SOURCE 11 GENE: CIB, EG:EG0007.11, CG4944, DMEL_CG4944; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS CONTRACTILE PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.RENAULT,C.HUSSON,M.F.CARLIER,D.DIDRY REVDAT 3 13-SEP-23 3U9Z 1 REMARK SEQADV LINK REVDAT 2 26-JUN-13 3U9Z 1 JRNL REVDAT 1 25-JAN-12 3U9Z 0 JRNL AUTH D.DIDRY,F.X.CANTRELLE,C.HUSSON,P.ROBLIN,A.M.MOORTHY,J.PEREZ, JRNL AUTH 2 C.LE CLAINCHE,M.HERTZOG,E.GUITTET,M.F.CARLIER, JRNL AUTH 3 C.VAN HEIJENOORT,L.RENAULT JRNL TITL HOW A SINGLE RESIDUE IN INDIVIDUAL BETA-THYMOSIN/WH2 DOMAINS JRNL TITL 2 CONTROLS THEIR FUNCTIONS IN ACTIN ASSEMBLY JRNL REF EMBO J. V. 31 1000 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22193718 JRNL DOI 10.1038/EMBOJ.2011.461 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.HERTZOG,C.VAN HEIJENOORT,D.DIDRY,M.GAUDIER,J.COUTANT, REMARK 1 AUTH 2 B.GIGANT,G.DIDELOT,T.PREAT,M.KNOSSOW,E.GUITTET,M.F.CARLIER REMARK 1 TITL THE BETA-THYMOSIN/WH2 DOMAIN; STRUCTURAL BASIS FOR THE REMARK 1 TITL 2 SWITCH FROM INHIBITION TO PROMOTION OF ACTIN ASSEMBLY. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 117 611 2004 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 15163409 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2949 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.155 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3041 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4123 ; 1.452 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 7.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;35.712 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;18.685 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 459 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2274 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1876 ; 1.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3033 ; 2.009 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 3.547 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1090 ; 5.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 371 REMARK 3 RESIDUE RANGE : A 376 A 377 REMARK 3 RESIDUE RANGE : C 13 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4475 4.2091 18.8459 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0277 REMARK 3 T33: 0.0260 T12: 0.0261 REMARK 3 T13: 0.0046 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6067 L22: 1.0365 REMARK 3 L33: 0.6464 L12: -0.3264 REMARK 3 L13: -0.0628 L23: 0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 0.0930 S13: 0.0156 REMARK 3 S21: -0.1146 S22: -0.1047 S23: -0.0862 REMARK 3 S31: 0.0575 S32: 0.0668 S33: 0.0244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3U9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 1SQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.05M NAACETATE PH4.7, REMARK 280 0.1M MGACETATE PH6.5, 0.32M GUANIDINE HCL, 0.8% DIOXANE, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.89750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.85400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.59050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.85400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.89750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.59050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 VAL A 43 REMARK 465 MET A 44 REMARK 465 VAL A 45 REMARK 465 GLY A 46 REMARK 465 MET A 47 REMARK 465 GLY A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 ARG A 372 REMARK 465 LYS A 373 REMARK 465 CYS A 374 REMARK 465 PHE A 375 REMARK 465 VAL C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 4 REMARK 465 ALA C 5 REMARK 465 PRO C 6 REMARK 465 ALA C 7 REMARK 465 LEU C 8 REMARK 465 LYS C 9 REMARK 465 ASP C 10 REMARK 465 LEU C 11 REMARK 465 PRO C 12 REMARK 465 ALA C 33 REMARK 465 SER C 34 REMARK 465 THR C 35 REMARK 465 GLN C 36 REMARK 465 GLU C 37 REMARK 465 LYS C 38 REMARK 465 ILE C 39 REMARK 465 ILE C 40 REMARK 465 LEU C 41 REMARK 465 PRO C 42 REMARK 465 THR C 43 REMARK 465 ALA C 44 REMARK 465 GLU C 45 REMARK 465 ASP C 46 REMARK 465 VAL C 47 REMARK 465 ALA C 48 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 465 LYS C 51 REMARK 465 THR C 52 REMARK 465 GLN C 53 REMARK 465 GLN C 54 REMARK 465 SER C 55 REMARK 465 ILE C 56 REMARK 465 PHE C 57 REMARK 465 GLU C 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER C 28 N LEU C 30 1.94 REMARK 500 O ARG A 39 O HOH A 693 1.95 REMARK 500 O HOH A 540 O HOH A 632 1.97 REMARK 500 CE MET A 355 O HOH A 678 2.02 REMARK 500 O ARG A 37 N THR A 66 2.09 REMARK 500 O HOH C 290 O HOH C 298 2.09 REMARK 500 SD MET A 119 O HOH A 677 2.10 REMARK 500 OD2 ASP A 187 NH1 ARG A 206 2.12 REMARK 500 O HOH A 527 O HOH A 699 2.15 REMARK 500 O HOH A 520 O HOH A 690 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN C 17 CB ASN C 17 CG 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 38 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 335 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 38 -147.23 -78.27 REMARK 500 ARG A 39 91.62 125.85 REMARK 500 HIS A 40 43.47 -172.82 REMARK 500 GLN A 41 78.25 140.58 REMARK 500 SER A 60 -107.08 -53.92 REMARK 500 LYS A 61 84.24 -69.30 REMARK 500 ALA A 181 -148.58 -155.97 REMARK 500 THR A 202 -150.46 -90.70 REMARK 500 ALA A 204 86.87 55.90 REMARK 500 GLU A 205 116.37 -24.25 REMARK 500 ASP A 244 -13.69 -159.08 REMARK 500 SER C 28 -142.64 -49.95 REMARK 500 LYS C 29 -37.51 51.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 38 ARG A 39 141.88 REMARK 500 ALA A 204 GLU A 205 -32.88 REMARK 500 GLU A 205 ARG A 206 33.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 377 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 376 O3B REMARK 620 2 HOH A 428 O 160.3 REMARK 620 3 HOH A 430 O 94.3 93.8 REMARK 620 4 HOH A 635 O 91.6 79.4 172.8 REMARK 620 5 HOH A 670 O 94.2 103.0 94.5 89.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 377 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SJH RELATED DB: PDB REMARK 900 RELATED ID: 3U8X RELATED DB: PDB REMARK 900 RELATED ID: 3U9D RELATED DB: PDB REMARK 900 RELATED ID: 1SQK RELATED DB: PDB DBREF 3U9Z A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 3U9Z C 2 58 UNP O97428 O97428_DROME 2 58 SEQADV 3U9Z VAL C 1 UNP O97428 EXPRESSION TAG SEQADV 3U9Z ASP C 26 UNP O97428 ASN 26 ENGINEERED MUTATION SEQADV 3U9Z LYS C 27 UNP O97428 GLN 27 ENGINEERED MUTATION SEQADV 3U9Z SER C 28 UNP O97428 ASP 28 ENGINEERED MUTATION SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 C 58 VAL ALA ALA PRO ALA PRO ALA LEU LYS ASP LEU PRO LYS SEQRES 2 C 58 VAL ALA GLU ASN LEU LYS SER GLN LEU GLU GLY PHE ASP SEQRES 3 C 58 LYS SER LYS LEU LYS ASN ALA SER THR GLN GLU LYS ILE SEQRES 4 C 58 ILE LEU PRO THR ALA GLU ASP VAL ALA ALA GLU LYS THR SEQRES 5 C 58 GLN GLN SER ILE PHE GLU HET ADP A 376 27 HET MG A 377 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *368(H2 O) HELIX 1 1 GLY A 55 SER A 60 1 6 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 ARG A 196 1 16 HELIX 8 8 ARG A 206 CYS A 217 1 12 HELIX 9 9 ASP A 222 SER A 233 1 12 HELIX 10 10 GLY A 251 THR A 260 1 10 HELIX 11 11 LEU A 261 PHE A 262 5 2 HELIX 12 12 GLN A 263 GLY A 268 5 6 HELIX 13 13 GLY A 273 CYS A 285 1 13 HELIX 14 14 ASP A 286 ASP A 288 5 3 HELIX 15 15 ILE A 289 ALA A 295 1 7 HELIX 16 16 GLY A 301 MET A 305 5 5 HELIX 17 17 GLY A 308 ALA A 321 1 14 HELIX 18 18 GLU A 334 LYS A 336 5 3 HELIX 19 19 TYR A 337 LEU A 349 1 13 HELIX 20 20 SER A 350 GLN A 353 5 4 HELIX 21 21 LYS A 359 GLY A 366 1 8 HELIX 22 22 PRO A 367 HIS A 371 5 5 HELIX 23 23 ALA C 15 PHE C 25 1 11 SHEET 1 A 6 ALA A 29 PRO A 32 0 SHEET 2 A 6 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 ARG A 37 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 THR A 66 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 C 3 TYR A 169 ALA A 170 0 SHEET 2 C 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 C 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 D 5 TYR A 169 ALA A 170 0 SHEET 2 D 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 5 GLY A 150 SER A 155 -1 N VAL A 152 O VAL A 163 SHEET 4 D 5 ASN A 297 SER A 300 1 O SER A 300 N SER A 155 SHEET 5 D 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 E 2 LYS A 238 GLU A 241 0 SHEET 2 E 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 LINK O3B ADP A 376 MG MG A 377 1555 1555 2.07 LINK MG MG A 377 O HOH A 428 1555 1555 2.25 LINK MG MG A 377 O HOH A 430 1555 1555 2.19 LINK MG MG A 377 O HOH A 635 1555 1555 2.13 LINK MG MG A 377 O HOH A 670 1555 1555 2.03 SITE 1 AC1 25 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC1 25 LYS A 18 GLY A 156 ASP A 157 GLY A 182 SITE 3 AC1 25 LYS A 213 GLU A 214 GLY A 301 GLY A 302 SITE 4 AC1 25 THR A 303 MET A 305 TYR A 306 LYS A 336 SITE 5 AC1 25 MG A 377 HOH A 390 HOH A 402 HOH A 430 SITE 6 AC1 25 HOH A 452 HOH A 531 HOH A 592 HOH A 635 SITE 7 AC1 25 HOH A 670 SITE 1 AC2 5 ADP A 376 HOH A 428 HOH A 430 HOH A 635 SITE 2 AC2 5 HOH A 670 CRYST1 45.795 75.181 117.708 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008496 0.00000