data_3UB2 # _entry.id 3UB2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UB2 RCSB RCSB068530 WWPDB D_1000068530 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UB3 . unspecified PDB 3UB4 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UB2 _pdbx_database_status.recvd_initial_deposition_date 2011-10-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, Y.' 1 'Lin, Z.' 2 # _citation.id primary _citation.title 'Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e34202 _citation.page_last e34202 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22485159 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0034202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lin, Z.' 1 primary 'Lu, J.' 2 primary 'Zhou, W.' 3 primary 'Shen, Y.' 4 # _cell.entry_id 3UB2 _cell.length_a 87.508 _cell.length_b 87.508 _cell.length_c 81.684 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UB2 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toll/interleukin-1 receptor domain-containing adapter protein' 15970.159 1 ? ? 'TIR domain, UNP residues 78-221' ? 2 non-polymer syn 2,3-DIHYDROXY-1,4-DITHIOBUTANE 154.251 1 ? ? ? ? 3 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Mal, TIR domain-containing adapter protein, Adaptor protein Wyatt, MyD88 adapter-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 SER n 1 6 ARG n 1 7 TRP n 1 8 SER n 1 9 LYS n 1 10 ASP n 1 11 TYR n 1 12 ASP n 1 13 VAL n 1 14 CYS n 1 15 VAL n 1 16 CYS n 1 17 HIS n 1 18 SER n 1 19 GLU n 1 20 GLU n 1 21 ASP n 1 22 LEU n 1 23 VAL n 1 24 ALA n 1 25 ALA n 1 26 GLN n 1 27 ASP n 1 28 LEU n 1 29 VAL n 1 30 SER n 1 31 TYR n 1 32 LEU n 1 33 GLU n 1 34 GLY n 1 35 SER n 1 36 THR n 1 37 ALA n 1 38 SER n 1 39 LEU n 1 40 ARG n 1 41 CYS n 1 42 PHE n 1 43 LEU n 1 44 GLN n 1 45 LEU n 1 46 ARG n 1 47 ASP n 1 48 ALA n 1 49 THR n 1 50 PRO n 1 51 GLY n 1 52 GLY n 1 53 ALA n 1 54 ILE n 1 55 VAL n 1 56 SER n 1 57 GLU n 1 58 LEU n 1 59 CYS n 1 60 GLN n 1 61 ALA n 1 62 LEU n 1 63 SER n 1 64 SER n 1 65 SER n 1 66 HIS n 1 67 CYS n 1 68 ARG n 1 69 VAL n 1 70 LEU n 1 71 LEU n 1 72 ILE n 1 73 THR n 1 74 PRO n 1 75 GLY n 1 76 PHE n 1 77 LEU n 1 78 GLN n 1 79 ASP n 1 80 PRO n 1 81 TRP n 1 82 CYS n 1 83 LYS n 1 84 TYR n 1 85 GLN n 1 86 MET n 1 87 LEU n 1 88 GLN n 1 89 ALA n 1 90 LEU n 1 91 THR n 1 92 GLU n 1 93 ALA n 1 94 PRO n 1 95 GLY n 1 96 ALA n 1 97 GLU n 1 98 GLY n 1 99 CYS n 1 100 THR n 1 101 ILE n 1 102 PRO n 1 103 LEU n 1 104 LEU n 1 105 SER n 1 106 GLY n 1 107 LEU n 1 108 SER n 1 109 ARG n 1 110 ALA n 1 111 ALA n 1 112 TYR n 1 113 PRO n 1 114 PRO n 1 115 GLU n 1 116 LEU n 1 117 ARG n 1 118 PHE n 1 119 MET n 1 120 TYR n 1 121 TYR n 1 122 VAL n 1 123 ASP n 1 124 GLY n 1 125 ARG n 1 126 GLY n 1 127 PRO n 1 128 ASP n 1 129 GLY n 1 130 GLY n 1 131 PHE n 1 132 ARG n 1 133 GLN n 1 134 VAL n 1 135 LYS n 1 136 GLU n 1 137 ALA n 1 138 VAL n 1 139 MET n 1 140 ARG n 1 141 TYR n 1 142 LEU n 1 143 GLN n 1 144 THR n 1 145 LEU n 1 146 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TIRAP, MAL' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIRAP_HUMAN _struct_ref.pdbx_db_accession P58753 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS ; _struct_ref.pdbx_align_begin 78 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UB2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P58753 _struct_ref_seq.db_align_beg 78 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 221 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 78 _struct_ref_seq.pdbx_auth_seq_align_end 221 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UB2 GLY A 1 ? UNP P58753 ? ? 'EXPRESSION TAG' 76 1 1 3UB2 PRO A 2 ? UNP P58753 ? ? 'EXPRESSION TAG' 77 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DTT non-polymer . 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL 'C4 H10 O2 S2' 154.251 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UB2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.90 _exptl_crystal.density_percent_sol 74.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pdbx_details '0.1M CHES, 12-20% Glycerol, 150-300mM sodium chloride, 10mM DTT, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-06-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3UB2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.4 _reflns.number_obs 12504 _reflns.number_all ? _reflns.percent_possible_obs 87.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 55.0 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 80.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UB2 _refine.ls_number_reflns_obs 12455 _refine.ls_number_reflns_all 12504 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1011124.76 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.14 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 96.4 _refine.ls_R_factor_obs 0.248 _refine.ls_R_factor_all 0.249 _refine.ls_R_factor_R_work 0.248 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 622 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 61.8 _refine.aniso_B[1][1] -7.32 _refine.aniso_B[2][2] -7.32 _refine.aniso_B[3][3] 14.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 53.23 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3UB2 _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 971 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 990 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 39.14 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.006 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.3 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 22.9 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 0.81 ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 1.57 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 2.82 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 1.91 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 3.06 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1646 _refine_ls_shell.R_factor_R_work 0.335 _refine_ls_shell.percent_reflns_obs 82.6 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 6 dtt.param dtt.top # _struct.entry_id 3UB2 _struct.title 'TIR domain of Mal/TIRAP' _struct.pdbx_descriptor 'Toll/interleukin-1 receptor domain-containing adapter protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UB2 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'TIR domain, TLRs adaptor, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? GLU A 20 ? SER A 93 GLU A 95 5 ? 3 HELX_P HELX_P2 2 ASP A 21 ? GLY A 34 ? ASP A 96 GLY A 109 1 ? 14 HELX_P HELX_P3 3 THR A 73 ? ASP A 79 ? THR A 148 ASP A 154 1 ? 7 HELX_P HELX_P4 4 ASP A 79 ? GLU A 92 ? ASP A 154 GLU A 167 1 ? 14 HELX_P HELX_P5 5 SER A 108 ? TYR A 112 ? SER A 183 TYR A 187 5 ? 5 HELX_P HELX_P6 6 PRO A 113 ? MET A 119 ? PRO A 188 MET A 194 5 ? 7 HELX_P HELX_P7 7 GLY A 126 ? GLY A 129 ? GLY A 201 GLY A 204 5 ? 4 HELX_P HELX_P8 8 GLY A 130 ? GLN A 143 ? GLY A 205 GLN A 218 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 89 A CYS 134 1_555 ? ? ? ? ? ? ? 2.049 ? disulf2 disulf ? ? A CYS 67 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 142 A CYS 174 1_555 ? ? ? ? ? ? ? 2.055 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 56 ? LEU A 58 ? SER A 131 LEU A 133 A 2 TYR A 11 ? CYS A 16 ? TYR A 86 CYS A 91 A 3 SER A 65 ? ILE A 72 ? SER A 140 ILE A 147 A 4 CYS A 99 ? LEU A 104 ? CYS A 174 LEU A 179 A 5 VAL A 122 ? ASP A 123 ? VAL A 197 ASP A 198 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 57 ? O GLU A 132 N VAL A 15 ? N VAL A 90 A 2 3 N CYS A 16 ? N CYS A 91 O VAL A 69 ? O VAL A 144 A 3 4 N LEU A 70 ? N LEU A 145 O LEU A 103 ? O LEU A 178 A 4 5 N PRO A 102 ? N PRO A 177 O VAL A 122 ? O VAL A 197 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE DTT A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 16 ? CYS A 91 . ? 1_555 ? 2 AC1 5 HIS A 17 ? HIS A 92 . ? 1_555 ? 3 AC1 5 SER A 18 ? SER A 93 . ? 1_555 ? 4 AC1 5 TRP A 81 ? TRP A 156 . ? 1_555 ? 5 AC1 5 CYS A 82 ? CYS A 157 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UB2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UB2 _atom_sites.fract_transf_matrix[1][1] 0.011428 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011428 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 76 ? ? ? A . n A 1 2 PRO 2 77 ? ? ? A . n A 1 3 GLY 3 78 ? ? ? A . n A 1 4 SER 4 79 79 SER SER A . n A 1 5 SER 5 80 80 SER SER A . n A 1 6 ARG 6 81 81 ARG ARG A . n A 1 7 TRP 7 82 82 TRP TRP A . n A 1 8 SER 8 83 83 SER SER A . n A 1 9 LYS 9 84 84 LYS LYS A . n A 1 10 ASP 10 85 85 ASP ASP A . n A 1 11 TYR 11 86 86 TYR TYR A . n A 1 12 ASP 12 87 87 ASP ASP A . n A 1 13 VAL 13 88 88 VAL VAL A . n A 1 14 CYS 14 89 89 CYS CYS A . n A 1 15 VAL 15 90 90 VAL VAL A . n A 1 16 CYS 16 91 91 CYS CYS A . n A 1 17 HIS 17 92 92 HIS HIS A . n A 1 18 SER 18 93 93 SER SER A . n A 1 19 GLU 19 94 94 GLU GLU A . n A 1 20 GLU 20 95 95 GLU GLU A . n A 1 21 ASP 21 96 96 ASP ASP A . n A 1 22 LEU 22 97 97 LEU LEU A . n A 1 23 VAL 23 98 98 VAL VAL A . n A 1 24 ALA 24 99 99 ALA ALA A . n A 1 25 ALA 25 100 100 ALA ALA A . n A 1 26 GLN 26 101 101 GLN GLN A . n A 1 27 ASP 27 102 102 ASP ASP A . n A 1 28 LEU 28 103 103 LEU LEU A . n A 1 29 VAL 29 104 104 VAL VAL A . n A 1 30 SER 30 105 105 SER SER A . n A 1 31 TYR 31 106 106 TYR TYR A . n A 1 32 LEU 32 107 107 LEU LEU A . n A 1 33 GLU 33 108 108 GLU GLU A . n A 1 34 GLY 34 109 109 GLY GLY A . n A 1 35 SER 35 110 ? ? ? A . n A 1 36 THR 36 111 ? ? ? A . n A 1 37 ALA 37 112 ? ? ? A . n A 1 38 SER 38 113 ? ? ? A . n A 1 39 LEU 39 114 ? ? ? A . n A 1 40 ARG 40 115 ? ? ? A . n A 1 41 CYS 41 116 ? ? ? A . n A 1 42 PHE 42 117 ? ? ? A . n A 1 43 LEU 43 118 ? ? ? A . n A 1 44 GLN 44 119 ? ? ? A . n A 1 45 LEU 45 120 ? ? ? A . n A 1 46 ARG 46 121 ? ? ? A . n A 1 47 ASP 47 122 ? ? ? A . n A 1 48 ALA 48 123 ? ? ? A . n A 1 49 THR 49 124 ? ? ? A . n A 1 50 PRO 50 125 ? ? ? A . n A 1 51 GLY 51 126 ? ? ? A . n A 1 52 GLY 52 127 ? ? ? A . n A 1 53 ALA 53 128 128 ALA ALA A . n A 1 54 ILE 54 129 129 ILE ILE A . n A 1 55 VAL 55 130 130 VAL VAL A . n A 1 56 SER 56 131 131 SER SER A . n A 1 57 GLU 57 132 132 GLU GLU A . n A 1 58 LEU 58 133 133 LEU LEU A . n A 1 59 CYS 59 134 134 CYS CYS A . n A 1 60 GLN 60 135 135 GLN GLN A . n A 1 61 ALA 61 136 136 ALA ALA A . n A 1 62 LEU 62 137 137 LEU LEU A . n A 1 63 SER 63 138 138 SER SER A . n A 1 64 SER 64 139 139 SER SER A . n A 1 65 SER 65 140 140 SER SER A . n A 1 66 HIS 66 141 141 HIS HIS A . n A 1 67 CYS 67 142 142 CYS CYS A . n A 1 68 ARG 68 143 143 ARG ARG A . n A 1 69 VAL 69 144 144 VAL VAL A . n A 1 70 LEU 70 145 145 LEU LEU A . n A 1 71 LEU 71 146 146 LEU LEU A . n A 1 72 ILE 72 147 147 ILE ILE A . n A 1 73 THR 73 148 148 THR THR A . n A 1 74 PRO 74 149 149 PRO PRO A . n A 1 75 GLY 75 150 150 GLY GLY A . n A 1 76 PHE 76 151 151 PHE PHE A . n A 1 77 LEU 77 152 152 LEU LEU A . n A 1 78 GLN 78 153 153 GLN GLN A . n A 1 79 ASP 79 154 154 ASP ASP A . n A 1 80 PRO 80 155 155 PRO PRO A . n A 1 81 TRP 81 156 156 TRP TRP A . n A 1 82 CYS 82 157 157 CYS CYS A . n A 1 83 LYS 83 158 158 LYS LYS A . n A 1 84 TYR 84 159 159 TYR TYR A . n A 1 85 GLN 85 160 160 GLN GLN A . n A 1 86 MET 86 161 161 MET MET A . n A 1 87 LEU 87 162 162 LEU LEU A . n A 1 88 GLN 88 163 163 GLN GLN A . n A 1 89 ALA 89 164 164 ALA ALA A . n A 1 90 LEU 90 165 165 LEU LEU A . n A 1 91 THR 91 166 166 THR THR A . n A 1 92 GLU 92 167 167 GLU GLU A . n A 1 93 ALA 93 168 168 ALA ALA A . n A 1 94 PRO 94 169 169 PRO PRO A . n A 1 95 GLY 95 170 170 GLY GLY A . n A 1 96 ALA 96 171 171 ALA ALA A . n A 1 97 GLU 97 172 172 GLU GLU A . n A 1 98 GLY 98 173 173 GLY GLY A . n A 1 99 CYS 99 174 174 CYS CYS A . n A 1 100 THR 100 175 175 THR THR A . n A 1 101 ILE 101 176 176 ILE ILE A . n A 1 102 PRO 102 177 177 PRO PRO A . n A 1 103 LEU 103 178 178 LEU LEU A . n A 1 104 LEU 104 179 179 LEU LEU A . n A 1 105 SER 105 180 180 SER SER A . n A 1 106 GLY 106 181 181 GLY GLY A . n A 1 107 LEU 107 182 182 LEU LEU A . n A 1 108 SER 108 183 183 SER SER A . n A 1 109 ARG 109 184 184 ARG ARG A . n A 1 110 ALA 110 185 185 ALA ALA A . n A 1 111 ALA 111 186 186 ALA ALA A . n A 1 112 TYR 112 187 187 TYR TYR A . n A 1 113 PRO 113 188 188 PRO PRO A . n A 1 114 PRO 114 189 189 PRO PRO A . n A 1 115 GLU 115 190 190 GLU GLU A . n A 1 116 LEU 116 191 191 LEU LEU A . n A 1 117 ARG 117 192 192 ARG ARG A . n A 1 118 PHE 118 193 193 PHE PHE A . n A 1 119 MET 119 194 194 MET MET A . n A 1 120 TYR 120 195 195 TYR TYR A . n A 1 121 TYR 121 196 196 TYR TYR A . n A 1 122 VAL 122 197 197 VAL VAL A . n A 1 123 ASP 123 198 198 ASP ASP A . n A 1 124 GLY 124 199 199 GLY GLY A . n A 1 125 ARG 125 200 200 ARG ARG A . n A 1 126 GLY 126 201 201 GLY GLY A . n A 1 127 PRO 127 202 202 PRO PRO A . n A 1 128 ASP 128 203 203 ASP ASP A . n A 1 129 GLY 129 204 204 GLY GLY A . n A 1 130 GLY 130 205 205 GLY GLY A . n A 1 131 PHE 131 206 206 PHE PHE A . n A 1 132 ARG 132 207 207 ARG ARG A . n A 1 133 GLN 133 208 208 GLN GLN A . n A 1 134 VAL 134 209 209 VAL VAL A . n A 1 135 LYS 135 210 210 LYS LYS A . n A 1 136 GLU 136 211 211 GLU GLU A . n A 1 137 ALA 137 212 212 ALA ALA A . n A 1 138 VAL 138 213 213 VAL VAL A . n A 1 139 MET 139 214 214 MET MET A . n A 1 140 ARG 140 215 215 ARG ARG A . n A 1 141 TYR 141 216 216 TYR TYR A . n A 1 142 LEU 142 217 217 LEU LEU A . n A 1 143 GLN 143 218 218 GLN GLN A . n A 1 144 THR 144 219 219 THR THR A . n A 1 145 LEU 145 220 220 LEU LEU A . n A 1 146 SER 146 221 221 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTT 1 1 1 DTT DTT A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 222 1 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2140 ? 1 MORE -22 ? 1 'SSA (A^2)' 13020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-05-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 CNS refinement 1.3 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 170 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 170 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 170 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 85.12 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -27.98 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 167 ? ? -119.61 79.27 2 1 ALA A 168 ? ? -174.15 -170.15 3 1 PRO A 169 ? ? -20.50 89.91 4 1 ALA A 171 ? ? 161.31 -9.02 5 1 GLU A 172 ? ? -85.50 -73.44 6 1 PRO A 189 ? ? -39.99 -39.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 76 ? A GLY 1 2 1 Y 1 A PRO 77 ? A PRO 2 3 1 Y 1 A GLY 78 ? A GLY 3 4 1 Y 1 A SER 110 ? A SER 35 5 1 Y 1 A THR 111 ? A THR 36 6 1 Y 1 A ALA 112 ? A ALA 37 7 1 Y 1 A SER 113 ? A SER 38 8 1 Y 1 A LEU 114 ? A LEU 39 9 1 Y 1 A ARG 115 ? A ARG 40 10 1 Y 1 A CYS 116 ? A CYS 41 11 1 Y 1 A PHE 117 ? A PHE 42 12 1 Y 1 A LEU 118 ? A LEU 43 13 1 Y 1 A GLN 119 ? A GLN 44 14 1 Y 1 A LEU 120 ? A LEU 45 15 1 Y 1 A ARG 121 ? A ARG 46 16 1 Y 1 A ASP 122 ? A ASP 47 17 1 Y 1 A ALA 123 ? A ALA 48 18 1 Y 1 A THR 124 ? A THR 49 19 1 Y 1 A PRO 125 ? A PRO 50 20 1 Y 1 A GLY 126 ? A GLY 51 21 1 Y 1 A GLY 127 ? A GLY 52 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2,3-DIHYDROXY-1,4-DITHIOBUTANE DTT 3 water HOH #