data_3UD6 # _entry.id 3UD6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UD6 pdb_00003ud6 10.2210/pdb3ud6/pdb RCSB RCSB068605 ? ? WWPDB D_1000068605 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2011-11-23 _pdbx_database_PDB_obs_spr.pdb_id 3UD6 _pdbx_database_PDB_obs_spr.replace_pdb_id 3NL8 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NXF . unspecified PDB 3O6Y . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UD6 _pdbx_database_status.recvd_initial_deposition_date 2011-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, D.' 1 'Stoddard, B.L.' 2 'Althoff, E.A.' 3 'Wang, L.' 4 'Jiang, L.' 5 'Moody, J.' 6 'Bolduc, J.' 7 'Lassila, J.' 8 'Hilvert, D.' 9 # _citation.id primary _citation.title 'Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 415 _citation.page_first 615 _citation.page_last 625 _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22075445 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.10.043 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, L.' 1 ? primary 'Althoff, E.A.' 2 ? primary 'Bolduc, J.' 3 ? primary 'Jiang, L.' 4 ? primary 'Moody, J.' 5 ? primary 'Lassila, J.K.' 6 ? primary 'Giger, L.' 7 ? primary 'Hilvert, D.' 8 ? primary 'Stoddard, B.' 9 ? primary 'Baker, D.' 10 ? # _cell.entry_id 3UD6 _cell.length_a 62.684 _cell.length_b 62.684 _cell.length_c 123.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UD6 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RETRO-ALDOLASE 29736.262 1 ? ? ? ? 2 non-polymer syn '1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE' 242.270 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKI NDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIISSLMRNP EKIKELIEGSLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKI NDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIISSLMRNP EKIKELIEGSLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 ARG n 1 4 TYR n 1 5 LEU n 1 6 LYS n 1 7 GLY n 1 8 TRP n 1 9 LEU n 1 10 GLU n 1 11 ASP n 1 12 VAL n 1 13 VAL n 1 14 GLN n 1 15 LEU n 1 16 SER n 1 17 LEU n 1 18 ARG n 1 19 ARG n 1 20 PRO n 1 21 SER n 1 22 VAL n 1 23 ARG n 1 24 ALA n 1 25 SER n 1 26 ARG n 1 27 GLN n 1 28 ARG n 1 29 PRO n 1 30 ILE n 1 31 ILE n 1 32 SER n 1 33 LEU n 1 34 ASN n 1 35 GLU n 1 36 ARG n 1 37 ILE n 1 38 LEU n 1 39 GLU n 1 40 PHE n 1 41 ASN n 1 42 LYS n 1 43 ARG n 1 44 ASN n 1 45 ILE n 1 46 THR n 1 47 ALA n 1 48 ILE n 1 49 ILE n 1 50 ALA n 1 51 THR n 1 52 TYR n 1 53 MET n 1 54 ARG n 1 55 LYS n 1 56 SER n 1 57 PRO n 1 58 TRP n 1 59 GLY n 1 60 LEU n 1 61 ASP n 1 62 VAL n 1 63 GLU n 1 64 ARG n 1 65 ASP n 1 66 PRO n 1 67 ILE n 1 68 GLU n 1 69 TYR n 1 70 ALA n 1 71 LYS n 1 72 PHE n 1 73 MET n 1 74 GLU n 1 75 ARG n 1 76 TYR n 1 77 ALA n 1 78 VAL n 1 79 GLY n 1 80 LEU n 1 81 SER n 1 82 ILE n 1 83 CYS n 1 84 THR n 1 85 GLU n 1 86 GLU n 1 87 LYS n 1 88 TYR n 1 89 ALA n 1 90 ASN n 1 91 GLY n 1 92 SER n 1 93 TYR n 1 94 GLU n 1 95 THR n 1 96 LEU n 1 97 ARG n 1 98 LYS n 1 99 ILE n 1 100 ALA n 1 101 SER n 1 102 SER n 1 103 VAL n 1 104 SER n 1 105 ILE n 1 106 PRO n 1 107 ILE n 1 108 LEU n 1 109 MET n 1 110 ALA n 1 111 ASP n 1 112 PHE n 1 113 ILE n 1 114 VAL n 1 115 LYS n 1 116 GLU n 1 117 SER n 1 118 GLN n 1 119 ILE n 1 120 ASP n 1 121 ASP n 1 122 ALA n 1 123 TYR n 1 124 ASN n 1 125 LEU n 1 126 GLY n 1 127 ALA n 1 128 ASP n 1 129 THR n 1 130 VAL n 1 131 PRO n 1 132 LEU n 1 133 ILE n 1 134 VAL n 1 135 LYS n 1 136 ILE n 1 137 LEU n 1 138 THR n 1 139 GLU n 1 140 ARG n 1 141 GLU n 1 142 LEU n 1 143 GLU n 1 144 SER n 1 145 LEU n 1 146 LEU n 1 147 GLU n 1 148 TYR n 1 149 ALA n 1 150 ARG n 1 151 SER n 1 152 TYR n 1 153 GLY n 1 154 MET n 1 155 GLU n 1 156 PRO n 1 157 ILE n 1 158 ILE n 1 159 LYS n 1 160 ILE n 1 161 ASN n 1 162 ASP n 1 163 GLU n 1 164 ASN n 1 165 ASP n 1 166 LEU n 1 167 ASP n 1 168 ILE n 1 169 ALA n 1 170 LEU n 1 171 ARG n 1 172 ILE n 1 173 GLY n 1 174 ALA n 1 175 ARG n 1 176 PHE n 1 177 ILE n 1 178 GLY n 1 179 ILE n 1 180 CYS n 1 181 SER n 1 182 ARG n 1 183 ASP n 1 184 TRP n 1 185 GLU n 1 186 THR n 1 187 LEU n 1 188 GLU n 1 189 ILE n 1 190 ASN n 1 191 LYS n 1 192 GLU n 1 193 ASN n 1 194 GLN n 1 195 ARG n 1 196 LYS n 1 197 LEU n 1 198 ILE n 1 199 SER n 1 200 MET n 1 201 ILE n 1 202 PRO n 1 203 SER n 1 204 ASN n 1 205 VAL n 1 206 VAL n 1 207 LYS n 1 208 VAL n 1 209 ALA n 1 210 SER n 1 211 THR n 1 212 GLY n 1 213 ILE n 1 214 SER n 1 215 GLU n 1 216 ARG n 1 217 ASN n 1 218 GLU n 1 219 ILE n 1 220 GLU n 1 221 GLU n 1 222 LEU n 1 223 ARG n 1 224 LYS n 1 225 LEU n 1 226 GLY n 1 227 VAL n 1 228 ASN n 1 229 ALA n 1 230 PHE n 1 231 SER n 1 232 ILE n 1 233 ILE n 1 234 SER n 1 235 SER n 1 236 LEU n 1 237 MET n 1 238 ARG n 1 239 ASN n 1 240 PRO n 1 241 GLU n 1 242 LYS n 1 243 ILE n 1 244 LYS n 1 245 GLU n 1 246 LEU n 1 247 ILE n 1 248 GLU n 1 249 GLY n 1 250 SER n 1 251 LEU n 1 252 GLU n 1 253 HIS n 1 254 HIS n 1 255 HIS n 1 256 HIS n 1 257 HIS n 1 258 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'The Sequence Was Computationally Designed Based On Indole 3 Glycerol Phosphate Synthase Naturally Found in Sulfolobus Solfataricus.' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ARTIFICIAL GENE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET29B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'THE SEQUENCE WAS COMPUTATIONALLY DESIGNED BASED ON INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE NATURALLY FOUND IN SULFOLOBUS SOLFATARICUS.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3UD6 _struct_ref.pdbx_db_accession 3UD6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MPRYLKGWLEDVVQLSLRRPSVRASRQRPIISLNERILEFNKRNITAIIATYMRKSPWGLDVERDPIEYAKFMERYAVGL SICTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXI NDENDLDIALRIGARFIGICSRDWETLEINKENQRKLISMIPSNVVKVASTGISERNEIEELRKLGVNAFSIISSLMRNP EKIKELIEGSLEHHHHHH ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UD6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3UD6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 258 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3NK non-polymer . '1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE' ? 'C15 H14 O3' 242.270 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UD6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein at 5mg/ml in 100mm NaCl, 25mm TRIS pH7.5. Crystals grew at and near 2M ammonium sulfate, 4% PEG400, 100mN Na acetate pH5.5, vapor diffusion, temperature 298k, VAPOR DIFFUSION ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2009-07-18 _diffrn_detector.details 'VARIMAX HF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'VARIMAX HR MIRRORS/OPTICS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UD6 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.091 _reflns.number_obs 17137 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.03700 _reflns.pdbx_netI_over_sigmaI 22.0000 _reflns.B_iso_Wilson_estimate 29.82 _reflns.pdbx_redundancy 2.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.091 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.15300 _reflns_shell.meanI_over_sigI_obs 6.860 _reflns_shell.pdbx_redundancy 2.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UD6 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16229 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.47 _refine.ls_d_res_high 2.091 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 868 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 32.85 _refine.aniso_B[1][1] -0.01000 _refine.aniso_B[2][2] -0.01000 _refine.aniso_B[3][3] 0.02000 _refine.aniso_B[1][2] -0.01000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1A53, MODIFIED TO PREVENT MODEL BIAS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.247 _refine.pdbx_overall_ESU_R_Free 0.196 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.894 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3UD6 _refine_analyze.Luzzati_coordinate_error_obs 0.268 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 19.47 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1995 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 2087 _refine_hist.d_res_high 2.091 _refine_hist.d_res_low 19.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 2035 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.028 2.003 ? 2749 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.933 5.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.439 23.820 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.268 15.000 ? 384 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.778 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.066 0.200 ? 314 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1484 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.194 0.200 ? 902 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1409 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.133 0.200 ? 119 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.163 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.110 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.765 2.000 ? 1285 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.376 3.000 ? 2011 'X-RAY DIFFRACTION' ? r_scbond_it 1.908 4.000 ? 871 'X-RAY DIFFRACTION' ? r_scangle_it 3.215 6.000 ? 738 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.091 _refine_ls_shell.d_res_low 2.15 _refine_ls_shell.number_reflns_R_work 1121 _refine_ls_shell.R_factor_R_work 0.2460 _refine_ls_shell.percent_reflns_obs 96.71 _refine_ls_shell.R_factor_R_free 0.3170 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3UD6 _struct.title 'Structural analyses of covalent enzyme-substrate analogue complexes reveal strengths and limitations of de novo enzyme design' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UD6 _struct_keywords.pdbx_keywords 'LYASE/LYASE INHIBITOR' _struct_keywords.text 'Computationally Designed, Retroaldolase, Tim Barrel, LYASE-LYASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 6 ? ARG A 18 ? LYS A 6 ARG A 18 1 ? 13 HELX_P HELX_P2 2 SER A 32 ? ARG A 43 ? SER A 32 ARG A 43 1 ? 12 HELX_P HELX_P3 3 ASP A 65 ? ARG A 75 ? ASP A 65 ARG A 75 1 ? 11 HELX_P HELX_P4 4 SER A 92 ? VAL A 103 ? SER A 92 VAL A 103 1 ? 12 HELX_P HELX_P5 5 LYS A 115 ? GLY A 126 ? LYS A 115 GLY A 126 1 ? 12 HELX_P HELX_P6 6 THR A 138 ? TYR A 152 ? THR A 138 TYR A 152 1 ? 15 HELX_P HELX_P7 7 ASP A 162 ? ILE A 172 ? ASP A 162 ILE A 172 1 ? 11 HELX_P HELX_P8 8 ASN A 190 ? SER A 199 ? ASN A 190 SER A 199 1 ? 10 HELX_P HELX_P9 9 ARG A 216 ? LEU A 225 ? ARG A 216 LEU A 225 1 ? 10 HELX_P HELX_P10 10 ILE A 233 ? ASN A 239 ? ILE A 233 ASN A 239 1 ? 7 HELX_P HELX_P11 11 GLU A 241 ? GLU A 248 ? GLU A 241 GLU A 248 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 159 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 3NK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C13 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 159 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3NK _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.274 _struct_conn.pdbx_value_order doub _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 107 ? ALA A 110 ? ILE A 107 ALA A 110 A 2 GLY A 79 ? CYS A 83 ? GLY A 79 CYS A 83 A 3 ILE A 48 ? TYR A 52 ? ILE A 48 TYR A 52 A 4 ALA A 229 ? ILE A 232 ? ALA A 229 ILE A 232 A 5 VAL A 206 ? SER A 210 ? VAL A 206 SER A 210 A 6 PHE A 176 ? ILE A 179 ? PHE A 176 ILE A 179 A 7 ILE A 157 ? ILE A 160 ? ILE A 157 ILE A 160 A 8 PRO A 131 ? ILE A 133 ? PRO A 131 ILE A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 108 ? O LEU A 108 N LEU A 80 ? N LEU A 80 A 2 3 O SER A 81 ? O SER A 81 N TYR A 52 ? N TYR A 52 A 3 4 N ILE A 49 ? N ILE A 49 O PHE A 230 ? O PHE A 230 A 4 5 O ALA A 229 ? O ALA A 229 N ALA A 209 ? N ALA A 209 A 5 6 O VAL A 206 ? O VAL A 206 N ILE A 177 ? N ILE A 177 A 6 7 O PHE A 176 ? O PHE A 176 N ILE A 158 ? N ILE A 158 A 7 8 O ILE A 157 ? O ILE A 157 N LEU A 132 ? N LEU A 132 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3NK 300 ? 9 'BINDING SITE FOR RESIDUE 3NK A 300' AC2 Software A SO4 401 ? 3 'BINDING SITE FOR RESIDUE SO4 A 401' AC3 Software A SO4 402 ? 7 'BINDING SITE FOR RESIDUE SO4 A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 SER A 81 ? SER A 81 . ? 1_555 ? 2 AC1 9 CYS A 83 ? CYS A 83 . ? 1_555 ? 3 AC1 9 GLU A 85 ? GLU A 85 . ? 1_555 ? 4 AC1 9 LEU A 108 ? LEU A 108 . ? 1_555 ? 5 AC1 9 ASP A 111 ? ASP A 111 . ? 1_555 ? 6 AC1 9 PHE A 112 ? PHE A 112 . ? 1_555 ? 7 AC1 9 LYS A 159 ? LYS A 159 . ? 1_555 ? 8 AC1 9 SER A 231 ? SER A 231 . ? 1_555 ? 9 AC1 9 HOH E . ? HOH A 383 . ? 1_555 ? 10 AC2 3 ARG A 36 ? ARG A 36 . ? 1_555 ? 11 AC2 3 LYS A 42 ? LYS A 42 . ? 6_555 ? 12 AC2 3 ARG A 43 ? ARG A 43 . ? 1_555 ? 13 AC3 7 TRP A 58 ? TRP A 58 . ? 1_555 ? 14 AC3 7 ARG A 171 ? ARG A 171 . ? 4_455 ? 15 AC3 7 ARG A 182 ? ARG A 182 . ? 1_555 ? 16 AC3 7 ILE A 233 ? ILE A 233 . ? 1_555 ? 17 AC3 7 SER A 234 ? SER A 234 . ? 1_555 ? 18 AC3 7 HOH E . ? HOH A 356 . ? 1_555 ? 19 AC3 7 HOH E . ? HOH A 357 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UD6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UD6 _atom_sites.fract_transf_matrix[1][1] 0.015953 _atom_sites.fract_transf_matrix[1][2] 0.009210 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018421 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008085 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 THR 138 138 138 THR THR A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 ARG 175 175 175 ARG ARG A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 CYS 180 180 180 CYS CYS A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 GLN 194 194 194 GLN GLN A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ILE 198 198 198 ILE ILE A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 MET 200 200 200 MET MET A . n A 1 201 ILE 201 201 201 ILE ILE A . n A 1 202 PRO 202 202 202 PRO PRO A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 ARG 223 223 223 ARG ARG A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 ILE 247 247 247 ILE ILE A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 SER 250 250 ? ? ? A . n A 1 251 LEU 251 251 ? ? ? A . n A 1 252 GLU 252 252 ? ? ? A . n A 1 253 HIS 253 253 ? ? ? A . n A 1 254 HIS 254 254 ? ? ? A . n A 1 255 HIS 255 255 ? ? ? A . n A 1 256 HIS 256 256 ? ? ? A . n A 1 257 HIS 257 257 ? ? ? A . n A 1 258 HIS 258 258 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3NK 1 300 159 3NK LYS A . C 3 SO4 1 401 401 SO4 SO4 A . D 3 SO4 1 402 402 SO4 SO4 A . E 4 HOH 1 301 301 HOH HOH A . E 4 HOH 2 302 302 HOH HOH A . E 4 HOH 3 305 305 HOH HOH A . E 4 HOH 4 306 306 HOH HOH A . E 4 HOH 5 307 307 HOH HOH A . E 4 HOH 6 308 308 HOH HOH A . E 4 HOH 7 309 309 HOH HOH A . E 4 HOH 8 310 310 HOH HOH A . E 4 HOH 9 311 311 HOH HOH A . E 4 HOH 10 312 312 HOH HOH A . E 4 HOH 11 313 313 HOH HOH A . E 4 HOH 12 314 314 HOH HOH A . E 4 HOH 13 315 315 HOH HOH A . E 4 HOH 14 316 316 HOH HOH A . E 4 HOH 15 317 317 HOH HOH A . E 4 HOH 16 318 318 HOH HOH A . E 4 HOH 17 319 319 HOH HOH A . E 4 HOH 18 320 320 HOH HOH A . E 4 HOH 19 321 321 HOH HOH A . E 4 HOH 20 322 322 HOH HOH A . E 4 HOH 21 323 323 HOH HOH A . E 4 HOH 22 324 324 HOH HOH A . E 4 HOH 23 325 325 HOH HOH A . E 4 HOH 24 326 326 HOH HOH A . E 4 HOH 25 327 327 HOH HOH A . E 4 HOH 26 328 328 HOH HOH A . E 4 HOH 27 329 329 HOH HOH A . E 4 HOH 28 330 330 HOH HOH A . E 4 HOH 29 333 333 HOH HOH A . E 4 HOH 30 334 334 HOH HOH A . E 4 HOH 31 335 335 HOH HOH A . E 4 HOH 32 336 336 HOH HOH A . E 4 HOH 33 337 337 HOH HOH A . E 4 HOH 34 338 338 HOH HOH A . E 4 HOH 35 339 339 HOH HOH A . E 4 HOH 36 341 341 HOH HOH A . E 4 HOH 37 342 342 HOH HOH A . E 4 HOH 38 343 343 HOH HOH A . E 4 HOH 39 344 344 HOH HOH A . E 4 HOH 40 345 345 HOH HOH A . E 4 HOH 41 346 346 HOH HOH A . E 4 HOH 42 347 347 HOH HOH A . E 4 HOH 43 348 348 HOH HOH A . E 4 HOH 44 349 349 HOH HOH A . E 4 HOH 45 351 351 HOH HOH A . E 4 HOH 46 353 353 HOH HOH A . E 4 HOH 47 354 354 HOH HOH A . E 4 HOH 48 355 355 HOH HOH A . E 4 HOH 49 356 356 HOH HOH A . E 4 HOH 50 357 357 HOH HOH A . E 4 HOH 51 359 359 HOH HOH A . E 4 HOH 52 360 360 HOH HOH A . E 4 HOH 53 361 361 HOH HOH A . E 4 HOH 54 363 363 HOH HOH A . E 4 HOH 55 364 364 HOH HOH A . E 4 HOH 56 366 366 HOH HOH A . E 4 HOH 57 367 367 HOH HOH A . E 4 HOH 58 368 368 HOH HOH A . E 4 HOH 59 371 371 HOH HOH A . E 4 HOH 60 372 372 HOH HOH A . E 4 HOH 61 373 373 HOH HOH A . E 4 HOH 62 377 377 HOH HOH A . E 4 HOH 63 381 381 HOH HOH A . E 4 HOH 64 382 382 HOH HOH A . E 4 HOH 65 383 383 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-23 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2012-02-01 4 'Structure model' 1 3 2013-11-20 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Non-polymer description' 4 4 'Structure model' 'Non-polymer description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.5.0102 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 3UD6 _pdbx_entry_details.nonpolymer_details ;1-(6-METHOXY-2-NAPTHALENYL)-1,3-BUTANEDIONE (3NK) WAS REACTED WITH THE PROTEIN AND QUENCHED WITH NA(BN)CH3. THE RESULTING COMPLEX FORMS A DOUBLE BOND BETWEEN ATOM C13 OF 3NK AND NZ OF LYS 159 ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.08 120.30 -3.22 0.50 N 2 1 NE A ARG 64 ? ? CZ A ARG 64 ? ? NH1 A ARG 64 ? ? 123.40 120.30 3.10 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 61 ? ? -157.63 87.03 2 1 SER A 214 ? ? 93.69 -90.50 3 1 GLU A 215 ? ? 59.04 168.92 4 1 ARG A 216 ? ? 65.52 -60.47 5 1 ILE A 233 ? ? -118.76 -84.55 6 1 GLU A 248 ? ? -105.91 -120.93 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 250 ? A SER 250 3 1 Y 1 A LEU 251 ? A LEU 251 4 1 Y 1 A GLU 252 ? A GLU 252 5 1 Y 1 A HIS 253 ? A HIS 253 6 1 Y 1 A HIS 254 ? A HIS 254 7 1 Y 1 A HIS 255 ? A HIS 255 8 1 Y 1 A HIS 256 ? A HIS 256 9 1 Y 1 A HIS 257 ? A HIS 257 10 1 Y 1 A HIS 258 ? A HIS 258 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3NK C14 C N N 1 3NK C13 C N N 2 3NK C12 C N N 3 3NK C11 C N N 4 3NK O11 O N N 5 3NK C2 C Y N 6 3NK C1 C Y N 7 3NK C9 C Y N 8 3NK C8 C Y N 9 3NK C7 C Y N 10 3NK C6 C Y N 11 3NK O6 O N N 12 3NK C15 C N N 13 3NK C5 C Y N 14 3NK C10 C Y N 15 3NK C4 C Y N 16 3NK C3 C Y N 17 3NK ONA O N N 18 3NK H141 H N N 19 3NK H142 H N N 20 3NK H143 H N N 21 3NK H121 H N N 22 3NK H122 H N N 23 3NK H1 H N N 24 3NK H3 H N N 25 3NK H8 H N N 26 3NK H7 H N N 27 3NK H5 H N N 28 3NK H151 H N N 29 3NK H152 H N N 30 3NK H4 H N N 31 3NK H153 H N N 32 ALA N N N N 33 ALA CA C N S 34 ALA C C N N 35 ALA O O N N 36 ALA CB C N N 37 ALA OXT O N N 38 ALA H H N N 39 ALA H2 H N N 40 ALA HA H N N 41 ALA HB1 H N N 42 ALA HB2 H N N 43 ALA HB3 H N N 44 ALA HXT H N N 45 ARG N N N N 46 ARG CA C N S 47 ARG C C N N 48 ARG O O N N 49 ARG CB C N N 50 ARG CG C N N 51 ARG CD C N N 52 ARG NE N N N 53 ARG CZ C N N 54 ARG NH1 N N N 55 ARG NH2 N N N 56 ARG OXT O N N 57 ARG H H N N 58 ARG H2 H N N 59 ARG HA H N N 60 ARG HB2 H N N 61 ARG HB3 H N N 62 ARG HG2 H N N 63 ARG HG3 H N N 64 ARG HD2 H N N 65 ARG HD3 H N N 66 ARG HE H N N 67 ARG HH11 H N N 68 ARG HH12 H N N 69 ARG HH21 H N N 70 ARG HH22 H N N 71 ARG HXT H N N 72 ASN N N N N 73 ASN CA C N S 74 ASN C C N N 75 ASN O O N N 76 ASN CB C N N 77 ASN CG C N N 78 ASN OD1 O N N 79 ASN ND2 N N N 80 ASN OXT O N N 81 ASN H H N N 82 ASN H2 H N N 83 ASN HA H N N 84 ASN HB2 H N N 85 ASN HB3 H N N 86 ASN HD21 H N N 87 ASN HD22 H N N 88 ASN HXT H N N 89 ASP N N N N 90 ASP CA C N S 91 ASP C C N N 92 ASP O O N N 93 ASP CB C N N 94 ASP CG C N N 95 ASP OD1 O N N 96 ASP OD2 O N N 97 ASP OXT O N N 98 ASP H H N N 99 ASP H2 H N N 100 ASP HA H N N 101 ASP HB2 H N N 102 ASP HB3 H N N 103 ASP HD2 H N N 104 ASP HXT H N N 105 CYS N N N N 106 CYS CA C N R 107 CYS C C N N 108 CYS O O N N 109 CYS CB C N N 110 CYS SG S N N 111 CYS OXT O N N 112 CYS H H N N 113 CYS H2 H N N 114 CYS HA H N N 115 CYS HB2 H N N 116 CYS HB3 H N N 117 CYS HG H N N 118 CYS HXT H N N 119 GLN N N N N 120 GLN CA C N S 121 GLN C C N N 122 GLN O O N N 123 GLN CB C N N 124 GLN CG C N N 125 GLN CD C N N 126 GLN OE1 O N N 127 GLN NE2 N N N 128 GLN OXT O N N 129 GLN H H N N 130 GLN H2 H N N 131 GLN HA H N N 132 GLN HB2 H N N 133 GLN HB3 H N N 134 GLN HG2 H N N 135 GLN HG3 H N N 136 GLN HE21 H N N 137 GLN HE22 H N N 138 GLN HXT H N N 139 GLU N N N N 140 GLU CA C N S 141 GLU C C N N 142 GLU O O N N 143 GLU CB C N N 144 GLU CG C N N 145 GLU CD C N N 146 GLU OE1 O N N 147 GLU OE2 O N N 148 GLU OXT O N N 149 GLU H H N N 150 GLU H2 H N N 151 GLU HA H N N 152 GLU HB2 H N N 153 GLU HB3 H N N 154 GLU HG2 H N N 155 GLU HG3 H N N 156 GLU HE2 H N N 157 GLU HXT H N N 158 GLY N N N N 159 GLY CA C N N 160 GLY C C N N 161 GLY O O N N 162 GLY OXT O N N 163 GLY H H N N 164 GLY H2 H N N 165 GLY HA2 H N N 166 GLY HA3 H N N 167 GLY HXT H N N 168 HIS N N N N 169 HIS CA C N S 170 HIS C C N N 171 HIS O O N N 172 HIS CB C N N 173 HIS CG C Y N 174 HIS ND1 N Y N 175 HIS CD2 C Y N 176 HIS CE1 C Y N 177 HIS NE2 N Y N 178 HIS OXT O N N 179 HIS H H N N 180 HIS H2 H N N 181 HIS HA H N N 182 HIS HB2 H N N 183 HIS HB3 H N N 184 HIS HD1 H N N 185 HIS HD2 H N N 186 HIS HE1 H N N 187 HIS HE2 H N N 188 HIS HXT H N N 189 HOH O O N N 190 HOH H1 H N N 191 HOH H2 H N N 192 ILE N N N N 193 ILE CA C N S 194 ILE C C N N 195 ILE O O N N 196 ILE CB C N S 197 ILE CG1 C N N 198 ILE CG2 C N N 199 ILE CD1 C N N 200 ILE OXT O N N 201 ILE H H N N 202 ILE H2 H N N 203 ILE HA H N N 204 ILE HB H N N 205 ILE HG12 H N N 206 ILE HG13 H N N 207 ILE HG21 H N N 208 ILE HG22 H N N 209 ILE HG23 H N N 210 ILE HD11 H N N 211 ILE HD12 H N N 212 ILE HD13 H N N 213 ILE HXT H N N 214 LEU N N N N 215 LEU CA C N S 216 LEU C C N N 217 LEU O O N N 218 LEU CB C N N 219 LEU CG C N N 220 LEU CD1 C N N 221 LEU CD2 C N N 222 LEU OXT O N N 223 LEU H H N N 224 LEU H2 H N N 225 LEU HA H N N 226 LEU HB2 H N N 227 LEU HB3 H N N 228 LEU HG H N N 229 LEU HD11 H N N 230 LEU HD12 H N N 231 LEU HD13 H N N 232 LEU HD21 H N N 233 LEU HD22 H N N 234 LEU HD23 H N N 235 LEU HXT H N N 236 LYS N N N N 237 LYS CA C N S 238 LYS C C N N 239 LYS O O N N 240 LYS CB C N N 241 LYS CG C N N 242 LYS CD C N N 243 LYS CE C N N 244 LYS NZ N N N 245 LYS OXT O N N 246 LYS H H N N 247 LYS H2 H N N 248 LYS HA H N N 249 LYS HB2 H N N 250 LYS HB3 H N N 251 LYS HG2 H N N 252 LYS HG3 H N N 253 LYS HD2 H N N 254 LYS HD3 H N N 255 LYS HE2 H N N 256 LYS HE3 H N N 257 LYS HZ1 H N N 258 LYS HZ2 H N N 259 LYS HZ3 H N N 260 LYS HXT H N N 261 MET N N N N 262 MET CA C N S 263 MET C C N N 264 MET O O N N 265 MET CB C N N 266 MET CG C N N 267 MET SD S N N 268 MET CE C N N 269 MET OXT O N N 270 MET H H N N 271 MET H2 H N N 272 MET HA H N N 273 MET HB2 H N N 274 MET HB3 H N N 275 MET HG2 H N N 276 MET HG3 H N N 277 MET HE1 H N N 278 MET HE2 H N N 279 MET HE3 H N N 280 MET HXT H N N 281 PHE N N N N 282 PHE CA C N S 283 PHE C C N N 284 PHE O O N N 285 PHE CB C N N 286 PHE CG C Y N 287 PHE CD1 C Y N 288 PHE CD2 C Y N 289 PHE CE1 C Y N 290 PHE CE2 C Y N 291 PHE CZ C Y N 292 PHE OXT O N N 293 PHE H H N N 294 PHE H2 H N N 295 PHE HA H N N 296 PHE HB2 H N N 297 PHE HB3 H N N 298 PHE HD1 H N N 299 PHE HD2 H N N 300 PHE HE1 H N N 301 PHE HE2 H N N 302 PHE HZ H N N 303 PHE HXT H N N 304 PRO N N N N 305 PRO CA C N S 306 PRO C C N N 307 PRO O O N N 308 PRO CB C N N 309 PRO CG C N N 310 PRO CD C N N 311 PRO OXT O N N 312 PRO H H N N 313 PRO HA H N N 314 PRO HB2 H N N 315 PRO HB3 H N N 316 PRO HG2 H N N 317 PRO HG3 H N N 318 PRO HD2 H N N 319 PRO HD3 H N N 320 PRO HXT H N N 321 SER N N N N 322 SER CA C N S 323 SER C C N N 324 SER O O N N 325 SER CB C N N 326 SER OG O N N 327 SER OXT O N N 328 SER H H N N 329 SER H2 H N N 330 SER HA H N N 331 SER HB2 H N N 332 SER HB3 H N N 333 SER HG H N N 334 SER HXT H N N 335 SO4 S S N N 336 SO4 O1 O N N 337 SO4 O2 O N N 338 SO4 O3 O N N 339 SO4 O4 O N N 340 THR N N N N 341 THR CA C N S 342 THR C C N N 343 THR O O N N 344 THR CB C N R 345 THR OG1 O N N 346 THR CG2 C N N 347 THR OXT O N N 348 THR H H N N 349 THR H2 H N N 350 THR HA H N N 351 THR HB H N N 352 THR HG1 H N N 353 THR HG21 H N N 354 THR HG22 H N N 355 THR HG23 H N N 356 THR HXT H N N 357 TRP N N N N 358 TRP CA C N S 359 TRP C C N N 360 TRP O O N N 361 TRP CB C N N 362 TRP CG C Y N 363 TRP CD1 C Y N 364 TRP CD2 C Y N 365 TRP NE1 N Y N 366 TRP CE2 C Y N 367 TRP CE3 C Y N 368 TRP CZ2 C Y N 369 TRP CZ3 C Y N 370 TRP CH2 C Y N 371 TRP OXT O N N 372 TRP H H N N 373 TRP H2 H N N 374 TRP HA H N N 375 TRP HB2 H N N 376 TRP HB3 H N N 377 TRP HD1 H N N 378 TRP HE1 H N N 379 TRP HE3 H N N 380 TRP HZ2 H N N 381 TRP HZ3 H N N 382 TRP HH2 H N N 383 TRP HXT H N N 384 TYR N N N N 385 TYR CA C N S 386 TYR C C N N 387 TYR O O N N 388 TYR CB C N N 389 TYR CG C Y N 390 TYR CD1 C Y N 391 TYR CD2 C Y N 392 TYR CE1 C Y N 393 TYR CE2 C Y N 394 TYR CZ C Y N 395 TYR OH O N N 396 TYR OXT O N N 397 TYR H H N N 398 TYR H2 H N N 399 TYR HA H N N 400 TYR HB2 H N N 401 TYR HB3 H N N 402 TYR HD1 H N N 403 TYR HD2 H N N 404 TYR HE1 H N N 405 TYR HE2 H N N 406 TYR HH H N N 407 TYR HXT H N N 408 VAL N N N N 409 VAL CA C N S 410 VAL C C N N 411 VAL O O N N 412 VAL CB C N N 413 VAL CG1 C N N 414 VAL CG2 C N N 415 VAL OXT O N N 416 VAL H H N N 417 VAL H2 H N N 418 VAL HA H N N 419 VAL HB H N N 420 VAL HG11 H N N 421 VAL HG12 H N N 422 VAL HG13 H N N 423 VAL HG21 H N N 424 VAL HG22 H N N 425 VAL HG23 H N N 426 VAL HXT H N N 427 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3NK C14 C13 sing N N 1 3NK C13 C12 sing N N 2 3NK C13 ONA doub N N 3 3NK C12 C11 sing N N 4 3NK C11 O11 doub N N 5 3NK C11 C2 sing N N 6 3NK C2 C1 sing N N 7 3NK C2 C3 doub N N 8 3NK C1 C9 doub N N 9 3NK C9 C8 sing N N 10 3NK C9 C10 sing N N 11 3NK C8 C7 doub Y N 12 3NK C7 C6 sing Y N 13 3NK C6 O6 sing Y N 14 3NK C6 C5 doub N N 15 3NK O6 C15 sing Y N 16 3NK C5 C10 sing Y N 17 3NK C10 C4 doub Y N 18 3NK C4 C3 sing N N 19 3NK C14 H141 sing Y N 20 3NK C14 H142 sing N N 21 3NK C14 H143 sing N N 22 3NK C12 H121 sing Y N 23 3NK C12 H122 sing N N 24 3NK C1 H1 sing N N 25 3NK C3 H3 sing N N 26 3NK C8 H8 sing N N 27 3NK C7 H7 sing Y N 28 3NK C5 H5 sing N N 29 3NK C15 H151 sing Y N 30 3NK C15 H152 sing Y N 31 3NK C15 H153 sing N N 32 3NK C4 H4 sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 ARG N CA sing N N 46 ARG N H sing N N 47 ARG N H2 sing N N 48 ARG CA C sing N N 49 ARG CA CB sing N N 50 ARG CA HA sing N N 51 ARG C O doub N N 52 ARG C OXT sing N N 53 ARG CB CG sing N N 54 ARG CB HB2 sing N N 55 ARG CB HB3 sing N N 56 ARG CG CD sing N N 57 ARG CG HG2 sing N N 58 ARG CG HG3 sing N N 59 ARG CD NE sing N N 60 ARG CD HD2 sing N N 61 ARG CD HD3 sing N N 62 ARG NE CZ sing N N 63 ARG NE HE sing N N 64 ARG CZ NH1 sing N N 65 ARG CZ NH2 doub N N 66 ARG NH1 HH11 sing N N 67 ARG NH1 HH12 sing N N 68 ARG NH2 HH21 sing N N 69 ARG NH2 HH22 sing N N 70 ARG OXT HXT sing N N 71 ASN N CA sing N N 72 ASN N H sing N N 73 ASN N H2 sing N N 74 ASN CA C sing N N 75 ASN CA CB sing N N 76 ASN CA HA sing N N 77 ASN C O doub N N 78 ASN C OXT sing N N 79 ASN CB CG sing N N 80 ASN CB HB2 sing N N 81 ASN CB HB3 sing N N 82 ASN CG OD1 doub N N 83 ASN CG ND2 sing N N 84 ASN ND2 HD21 sing N N 85 ASN ND2 HD22 sing N N 86 ASN OXT HXT sing N N 87 ASP N CA sing N N 88 ASP N H sing N N 89 ASP N H2 sing N N 90 ASP CA C sing N N 91 ASP CA CB sing N N 92 ASP CA HA sing N N 93 ASP C O doub N N 94 ASP C OXT sing N N 95 ASP CB CG sing N N 96 ASP CB HB2 sing N N 97 ASP CB HB3 sing N N 98 ASP CG OD1 doub N N 99 ASP CG OD2 sing N N 100 ASP OD2 HD2 sing N N 101 ASP OXT HXT sing N N 102 CYS N CA sing N N 103 CYS N H sing N N 104 CYS N H2 sing N N 105 CYS CA C sing N N 106 CYS CA CB sing N N 107 CYS CA HA sing N N 108 CYS C O doub N N 109 CYS C OXT sing N N 110 CYS CB SG sing N N 111 CYS CB HB2 sing N N 112 CYS CB HB3 sing N N 113 CYS SG HG sing N N 114 CYS OXT HXT sing N N 115 GLN N CA sing N N 116 GLN N H sing N N 117 GLN N H2 sing N N 118 GLN CA C sing N N 119 GLN CA CB sing N N 120 GLN CA HA sing N N 121 GLN C O doub N N 122 GLN C OXT sing N N 123 GLN CB CG sing N N 124 GLN CB HB2 sing N N 125 GLN CB HB3 sing N N 126 GLN CG CD sing N N 127 GLN CG HG2 sing N N 128 GLN CG HG3 sing N N 129 GLN CD OE1 doub N N 130 GLN CD NE2 sing N N 131 GLN NE2 HE21 sing N N 132 GLN NE2 HE22 sing N N 133 GLN OXT HXT sing N N 134 GLU N CA sing N N 135 GLU N H sing N N 136 GLU N H2 sing N N 137 GLU CA C sing N N 138 GLU CA CB sing N N 139 GLU CA HA sing N N 140 GLU C O doub N N 141 GLU C OXT sing N N 142 GLU CB CG sing N N 143 GLU CB HB2 sing N N 144 GLU CB HB3 sing N N 145 GLU CG CD sing N N 146 GLU CG HG2 sing N N 147 GLU CG HG3 sing N N 148 GLU CD OE1 doub N N 149 GLU CD OE2 sing N N 150 GLU OE2 HE2 sing N N 151 GLU OXT HXT sing N N 152 GLY N CA sing N N 153 GLY N H sing N N 154 GLY N H2 sing N N 155 GLY CA C sing N N 156 GLY CA HA2 sing N N 157 GLY CA HA3 sing N N 158 GLY C O doub N N 159 GLY C OXT sing N N 160 GLY OXT HXT sing N N 161 HIS N CA sing N N 162 HIS N H sing N N 163 HIS N H2 sing N N 164 HIS CA C sing N N 165 HIS CA CB sing N N 166 HIS CA HA sing N N 167 HIS C O doub N N 168 HIS C OXT sing N N 169 HIS CB CG sing N N 170 HIS CB HB2 sing N N 171 HIS CB HB3 sing N N 172 HIS CG ND1 sing Y N 173 HIS CG CD2 doub Y N 174 HIS ND1 CE1 doub Y N 175 HIS ND1 HD1 sing N N 176 HIS CD2 NE2 sing Y N 177 HIS CD2 HD2 sing N N 178 HIS CE1 NE2 sing Y N 179 HIS CE1 HE1 sing N N 180 HIS NE2 HE2 sing N N 181 HIS OXT HXT sing N N 182 HOH O H1 sing N N 183 HOH O H2 sing N N 184 ILE N CA sing N N 185 ILE N H sing N N 186 ILE N H2 sing N N 187 ILE CA C sing N N 188 ILE CA CB sing N N 189 ILE CA HA sing N N 190 ILE C O doub N N 191 ILE C OXT sing N N 192 ILE CB CG1 sing N N 193 ILE CB CG2 sing N N 194 ILE CB HB sing N N 195 ILE CG1 CD1 sing N N 196 ILE CG1 HG12 sing N N 197 ILE CG1 HG13 sing N N 198 ILE CG2 HG21 sing N N 199 ILE CG2 HG22 sing N N 200 ILE CG2 HG23 sing N N 201 ILE CD1 HD11 sing N N 202 ILE CD1 HD12 sing N N 203 ILE CD1 HD13 sing N N 204 ILE OXT HXT sing N N 205 LEU N CA sing N N 206 LEU N H sing N N 207 LEU N H2 sing N N 208 LEU CA C sing N N 209 LEU CA CB sing N N 210 LEU CA HA sing N N 211 LEU C O doub N N 212 LEU C OXT sing N N 213 LEU CB CG sing N N 214 LEU CB HB2 sing N N 215 LEU CB HB3 sing N N 216 LEU CG CD1 sing N N 217 LEU CG CD2 sing N N 218 LEU CG HG sing N N 219 LEU CD1 HD11 sing N N 220 LEU CD1 HD12 sing N N 221 LEU CD1 HD13 sing N N 222 LEU CD2 HD21 sing N N 223 LEU CD2 HD22 sing N N 224 LEU CD2 HD23 sing N N 225 LEU OXT HXT sing N N 226 LYS N CA sing N N 227 LYS N H sing N N 228 LYS N H2 sing N N 229 LYS CA C sing N N 230 LYS CA CB sing N N 231 LYS CA HA sing N N 232 LYS C O doub N N 233 LYS C OXT sing N N 234 LYS CB CG sing N N 235 LYS CB HB2 sing N N 236 LYS CB HB3 sing N N 237 LYS CG CD sing N N 238 LYS CG HG2 sing N N 239 LYS CG HG3 sing N N 240 LYS CD CE sing N N 241 LYS CD HD2 sing N N 242 LYS CD HD3 sing N N 243 LYS CE NZ sing N N 244 LYS CE HE2 sing N N 245 LYS CE HE3 sing N N 246 LYS NZ HZ1 sing N N 247 LYS NZ HZ2 sing N N 248 LYS NZ HZ3 sing N N 249 LYS OXT HXT sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 PHE N CA sing N N 270 PHE N H sing N N 271 PHE N H2 sing N N 272 PHE CA C sing N N 273 PHE CA CB sing N N 274 PHE CA HA sing N N 275 PHE C O doub N N 276 PHE C OXT sing N N 277 PHE CB CG sing N N 278 PHE CB HB2 sing N N 279 PHE CB HB3 sing N N 280 PHE CG CD1 doub Y N 281 PHE CG CD2 sing Y N 282 PHE CD1 CE1 sing Y N 283 PHE CD1 HD1 sing N N 284 PHE CD2 CE2 doub Y N 285 PHE CD2 HD2 sing N N 286 PHE CE1 CZ doub Y N 287 PHE CE1 HE1 sing N N 288 PHE CE2 CZ sing Y N 289 PHE CE2 HE2 sing N N 290 PHE CZ HZ sing N N 291 PHE OXT HXT sing N N 292 PRO N CA sing N N 293 PRO N CD sing N N 294 PRO N H sing N N 295 PRO CA C sing N N 296 PRO CA CB sing N N 297 PRO CA HA sing N N 298 PRO C O doub N N 299 PRO C OXT sing N N 300 PRO CB CG sing N N 301 PRO CB HB2 sing N N 302 PRO CB HB3 sing N N 303 PRO CG CD sing N N 304 PRO CG HG2 sing N N 305 PRO CG HG3 sing N N 306 PRO CD HD2 sing N N 307 PRO CD HD3 sing N N 308 PRO OXT HXT sing N N 309 SER N CA sing N N 310 SER N H sing N N 311 SER N H2 sing N N 312 SER CA C sing N N 313 SER CA CB sing N N 314 SER CA HA sing N N 315 SER C O doub N N 316 SER C OXT sing N N 317 SER CB OG sing N N 318 SER CB HB2 sing N N 319 SER CB HB3 sing N N 320 SER OG HG sing N N 321 SER OXT HXT sing N N 322 SO4 S O1 doub N N 323 SO4 S O2 doub N N 324 SO4 S O3 sing N N 325 SO4 S O4 sing N N 326 THR N CA sing N N 327 THR N H sing N N 328 THR N H2 sing N N 329 THR CA C sing N N 330 THR CA CB sing N N 331 THR CA HA sing N N 332 THR C O doub N N 333 THR C OXT sing N N 334 THR CB OG1 sing N N 335 THR CB CG2 sing N N 336 THR CB HB sing N N 337 THR OG1 HG1 sing N N 338 THR CG2 HG21 sing N N 339 THR CG2 HG22 sing N N 340 THR CG2 HG23 sing N N 341 THR OXT HXT sing N N 342 TRP N CA sing N N 343 TRP N H sing N N 344 TRP N H2 sing N N 345 TRP CA C sing N N 346 TRP CA CB sing N N 347 TRP CA HA sing N N 348 TRP C O doub N N 349 TRP C OXT sing N N 350 TRP CB CG sing N N 351 TRP CB HB2 sing N N 352 TRP CB HB3 sing N N 353 TRP CG CD1 doub Y N 354 TRP CG CD2 sing Y N 355 TRP CD1 NE1 sing Y N 356 TRP CD1 HD1 sing N N 357 TRP CD2 CE2 doub Y N 358 TRP CD2 CE3 sing Y N 359 TRP NE1 CE2 sing Y N 360 TRP NE1 HE1 sing N N 361 TRP CE2 CZ2 sing Y N 362 TRP CE3 CZ3 doub Y N 363 TRP CE3 HE3 sing N N 364 TRP CZ2 CH2 doub Y N 365 TRP CZ2 HZ2 sing N N 366 TRP CZ3 CH2 sing Y N 367 TRP CZ3 HZ3 sing N N 368 TRP CH2 HH2 sing N N 369 TRP OXT HXT sing N N 370 TYR N CA sing N N 371 TYR N H sing N N 372 TYR N H2 sing N N 373 TYR CA C sing N N 374 TYR CA CB sing N N 375 TYR CA HA sing N N 376 TYR C O doub N N 377 TYR C OXT sing N N 378 TYR CB CG sing N N 379 TYR CB HB2 sing N N 380 TYR CB HB3 sing N N 381 TYR CG CD1 doub Y N 382 TYR CG CD2 sing Y N 383 TYR CD1 CE1 sing Y N 384 TYR CD1 HD1 sing N N 385 TYR CD2 CE2 doub Y N 386 TYR CD2 HD2 sing N N 387 TYR CE1 CZ doub Y N 388 TYR CE1 HE1 sing N N 389 TYR CE2 CZ sing Y N 390 TYR CE2 HE2 sing N N 391 TYR CZ OH sing N N 392 TYR OH HH sing N N 393 TYR OXT HXT sing N N 394 VAL N CA sing N N 395 VAL N H sing N N 396 VAL N H2 sing N N 397 VAL CA C sing N N 398 VAL CA CB sing N N 399 VAL CA HA sing N N 400 VAL C O doub N N 401 VAL C OXT sing N N 402 VAL CB CG1 sing N N 403 VAL CB CG2 sing N N 404 VAL CB HB sing N N 405 VAL CG1 HG11 sing N N 406 VAL CG1 HG12 sing N N 407 VAL CG1 HG13 sing N N 408 VAL CG2 HG21 sing N N 409 VAL CG2 HG22 sing N N 410 VAL CG2 HG23 sing N N 411 VAL OXT HXT sing N N 412 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE' 3NK 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1A53 _pdbx_initial_refinement_model.details 'PDB ENTRY 1A53, MODIFIED TO PREVENT MODEL BIAS' #