data_3UDQ # _entry.id 3UDQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UDQ RCSB RCSB068625 WWPDB D_1000068625 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UDH 'Crystal Structure of BACE with Compound 1' unspecified PDB 3UDJ 'Crystal Structure of BACE with Compound 5' unspecified PDB 3UDK 'Crystal Structure of BACE with Compound 6' unspecified PDB 3UDM 'Crystal Structure of BACE with Compound 8' unspecified PDB 3UDN 'Crystal Structure of BACE with Compound 9' unspecified PDB 3UDP 'Crystal Structure of BACE with Compound 12' unspecified PDB 3UDR 'Crystal Structure of BACE with Compound 14' unspecified PDB 3UDY 'Crystal Structure of BACE with Compound 11' unspecified # _pdbx_database_status.entry_id 3UDQ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Efremov, I.V.' 1 'Vajdos, F.F.' 2 'Borzilleri, K.' 3 'Capetta, S.' 4 'Dorff, P.' 5 'Dutra, J.' 6 'Mansour, M.' 7 'Oborski, C.' 8 ;O'Connell, T. ; 9 ;O'Sullivan, T.J. ; 10 'Pandit, J.' 11 'Wang, H.' 12 'Withka, J.' 13 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Discovery and optimization of a novel spiropyrrolidine inhibitor of {beta}-secretase (BACE1) through fragment-based drug design.' J.Med.Chem. 55 9069 9088 2012 JMCMAR US 0022-2623 0151 ? 22468999 10.1021/jm201715d 1 ;High yield expression of human BACE constructs in Escherichia coli for refolding, purification, and high resolution diffracting crystal forms. ; 'Protein Pept.Lett.' 15 131 143 2008 PPELEN NE 0929-8665 2077 ? 18289105 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Efremov, I.V.' 1 primary 'Vajdos, F.F.' 2 primary 'Borzilleri, K.A.' 3 primary 'Capetta, S.' 4 primary 'Chen, H.' 5 primary 'Dorff, P.H.' 6 primary 'Dutra, J.K.' 7 primary 'Goldstein, S.W.' 8 primary 'Mansour, M.' 9 primary 'McColl, A.' 10 primary 'Noell, S.' 11 primary 'Oborski, C.E.' 12 primary ;O'Connell, T.N. ; 13 primary ;O'Sullivan, T.J. ; 14 primary 'Pandit, J.' 15 primary 'Wang, H.' 16 primary 'Wei, B.' 17 primary 'Withka, J.M.' 18 1 'Tomasselli, A.G.' 19 1 'Paddock, D.J.' 20 1 'Emmons, T.L.' 21 1 'Mildner, A.M.' 22 1 'Leone, J.W.' 23 1 'Lull, J.M.' 24 1 'Cialdella, J.I.' 25 1 'Prince, D.B.' 26 1 'Fischer, H.D.' 27 1 'Heinrikson, R.L.' 28 1 'Benson, T.E.' 29 # _cell.length_a 74.467 _cell.length_b 103.824 _cell.length_c 100.052 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3UDQ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3UDQ _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-secretase 1' 45156.730 1 3.4.23.46 ? 'UNP residues 58-453' ? 2 non-polymer syn ;(4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate ; 491.355 1 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;BACE, Aspartyl protease 2, ASP2, Asp 2, Beta-site amyloid precursor protein cleaving enzyme 1, Beta-site APP cleaving enzyme 1, Memapsin-2, Membrane-associated aspartic protease 2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCG AGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRL PKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ DDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYNIPQTDESRSHH HHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCG AGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRL PKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ DDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYNIPQTDESRSHH HHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PHE n 1 4 VAL n 1 5 GLU n 1 6 MET n 1 7 VAL n 1 8 ASP n 1 9 ASN n 1 10 LEU n 1 11 ARG n 1 12 GLY n 1 13 LYS n 1 14 SER n 1 15 GLY n 1 16 GLN n 1 17 GLY n 1 18 TYR n 1 19 TYR n 1 20 VAL n 1 21 GLU n 1 22 MET n 1 23 THR n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 PRO n 1 28 PRO n 1 29 GLN n 1 30 THR n 1 31 LEU n 1 32 ASN n 1 33 ILE n 1 34 LEU n 1 35 VAL n 1 36 ASP n 1 37 THR n 1 38 GLY n 1 39 SER n 1 40 SER n 1 41 ASN n 1 42 PHE n 1 43 ALA n 1 44 VAL n 1 45 GLY n 1 46 ALA n 1 47 ALA n 1 48 PRO n 1 49 HIS n 1 50 PRO n 1 51 PHE n 1 52 LEU n 1 53 HIS n 1 54 ARG n 1 55 TYR n 1 56 TYR n 1 57 GLN n 1 58 ARG n 1 59 GLN n 1 60 LEU n 1 61 SER n 1 62 SER n 1 63 THR n 1 64 TYR n 1 65 ARG n 1 66 ASP n 1 67 LEU n 1 68 ARG n 1 69 LYS n 1 70 GLY n 1 71 VAL n 1 72 TYR n 1 73 VAL n 1 74 PRO n 1 75 TYR n 1 76 THR n 1 77 GLN n 1 78 GLY n 1 79 LYS n 1 80 TRP n 1 81 GLU n 1 82 GLY n 1 83 GLU n 1 84 LEU n 1 85 GLY n 1 86 THR n 1 87 ASP n 1 88 LEU n 1 89 VAL n 1 90 SER n 1 91 ILE n 1 92 PRO n 1 93 HIS n 1 94 GLY n 1 95 PRO n 1 96 ASN n 1 97 VAL n 1 98 THR n 1 99 VAL n 1 100 ARG n 1 101 ALA n 1 102 ASN n 1 103 ILE n 1 104 ALA n 1 105 ALA n 1 106 ILE n 1 107 THR n 1 108 GLU n 1 109 SER n 1 110 ASP n 1 111 LYS n 1 112 PHE n 1 113 PHE n 1 114 ILE n 1 115 ASN n 1 116 GLY n 1 117 SER n 1 118 ASN n 1 119 TRP n 1 120 GLU n 1 121 GLY n 1 122 ILE n 1 123 LEU n 1 124 GLY n 1 125 LEU n 1 126 ALA n 1 127 TYR n 1 128 ALA n 1 129 GLU n 1 130 ILE n 1 131 ALA n 1 132 ARG n 1 133 PRO n 1 134 ASP n 1 135 ASP n 1 136 SER n 1 137 LEU n 1 138 GLU n 1 139 PRO n 1 140 PHE n 1 141 PHE n 1 142 ASP n 1 143 SER n 1 144 LEU n 1 145 VAL n 1 146 LYS n 1 147 GLN n 1 148 THR n 1 149 HIS n 1 150 VAL n 1 151 PRO n 1 152 ASN n 1 153 LEU n 1 154 PHE n 1 155 SER n 1 156 LEU n 1 157 GLN n 1 158 LEU n 1 159 CYS n 1 160 GLY n 1 161 ALA n 1 162 GLY n 1 163 PHE n 1 164 PRO n 1 165 LEU n 1 166 ASN n 1 167 GLN n 1 168 SER n 1 169 GLU n 1 170 VAL n 1 171 LEU n 1 172 ALA n 1 173 SER n 1 174 VAL n 1 175 GLY n 1 176 GLY n 1 177 SER n 1 178 MET n 1 179 ILE n 1 180 ILE n 1 181 GLY n 1 182 GLY n 1 183 ILE n 1 184 ASP n 1 185 HIS n 1 186 SER n 1 187 LEU n 1 188 TYR n 1 189 THR n 1 190 GLY n 1 191 SER n 1 192 LEU n 1 193 TRP n 1 194 TYR n 1 195 THR n 1 196 PRO n 1 197 ILE n 1 198 ARG n 1 199 ARG n 1 200 GLU n 1 201 TRP n 1 202 TYR n 1 203 TYR n 1 204 GLU n 1 205 VAL n 1 206 ILE n 1 207 ILE n 1 208 VAL n 1 209 ARG n 1 210 VAL n 1 211 GLU n 1 212 ILE n 1 213 ASN n 1 214 GLY n 1 215 GLN n 1 216 ASP n 1 217 LEU n 1 218 LYS n 1 219 MET n 1 220 ASP n 1 221 CYS n 1 222 LYS n 1 223 GLU n 1 224 TYR n 1 225 ASN n 1 226 TYR n 1 227 ASP n 1 228 LYS n 1 229 SER n 1 230 ILE n 1 231 VAL n 1 232 ASP n 1 233 SER n 1 234 GLY n 1 235 THR n 1 236 THR n 1 237 ASN n 1 238 LEU n 1 239 ARG n 1 240 LEU n 1 241 PRO n 1 242 LYS n 1 243 LYS n 1 244 VAL n 1 245 PHE n 1 246 GLU n 1 247 ALA n 1 248 ALA n 1 249 VAL n 1 250 LYS n 1 251 SER n 1 252 ILE n 1 253 LYS n 1 254 ALA n 1 255 ALA n 1 256 SER n 1 257 SER n 1 258 THR n 1 259 GLU n 1 260 LYS n 1 261 PHE n 1 262 PRO n 1 263 ASP n 1 264 GLY n 1 265 PHE n 1 266 TRP n 1 267 LEU n 1 268 GLY n 1 269 GLU n 1 270 GLN n 1 271 LEU n 1 272 VAL n 1 273 CYS n 1 274 TRP n 1 275 GLN n 1 276 ALA n 1 277 GLY n 1 278 THR n 1 279 THR n 1 280 PRO n 1 281 TRP n 1 282 ASN n 1 283 ILE n 1 284 PHE n 1 285 PRO n 1 286 VAL n 1 287 ILE n 1 288 SER n 1 289 LEU n 1 290 TYR n 1 291 LEU n 1 292 MET n 1 293 GLY n 1 294 GLU n 1 295 VAL n 1 296 THR n 1 297 ASN n 1 298 GLN n 1 299 SER n 1 300 PHE n 1 301 ARG n 1 302 ILE n 1 303 THR n 1 304 ILE n 1 305 LEU n 1 306 PRO n 1 307 GLN n 1 308 GLN n 1 309 TYR n 1 310 LEU n 1 311 ARG n 1 312 PRO n 1 313 VAL n 1 314 GLU n 1 315 ASP n 1 316 VAL n 1 317 ALA n 1 318 THR n 1 319 SER n 1 320 GLN n 1 321 ASP n 1 322 ASP n 1 323 CYS n 1 324 TYR n 1 325 LYS n 1 326 PHE n 1 327 ALA n 1 328 ILE n 1 329 SER n 1 330 GLN n 1 331 SER n 1 332 SER n 1 333 THR n 1 334 GLY n 1 335 THR n 1 336 VAL n 1 337 MET n 1 338 GLY n 1 339 ALA n 1 340 VAL n 1 341 ILE n 1 342 MET n 1 343 GLU n 1 344 GLY n 1 345 PHE n 1 346 TYR n 1 347 VAL n 1 348 VAL n 1 349 PHE n 1 350 ASP n 1 351 ARG n 1 352 ALA n 1 353 ARG n 1 354 LYS n 1 355 ARG n 1 356 ILE n 1 357 GLY n 1 358 PHE n 1 359 ALA n 1 360 VAL n 1 361 SER n 1 362 ALA n 1 363 CYS n 1 364 HIS n 1 365 VAL n 1 366 HIS n 1 367 ASP n 1 368 GLU n 1 369 PHE n 1 370 ARG n 1 371 THR n 1 372 ALA n 1 373 ALA n 1 374 VAL n 1 375 GLU n 1 376 GLY n 1 377 PRO n 1 378 PHE n 1 379 VAL n 1 380 THR n 1 381 LEU n 1 382 ASP n 1 383 MET n 1 384 GLU n 1 385 ASP n 1 386 CYS n 1 387 GLY n 1 388 TYR n 1 389 ASN n 1 390 ILE n 1 391 PRO n 1 392 GLN n 1 393 THR n 1 394 ASP n 1 395 GLU n 1 396 SER n 1 397 ARG n 1 398 SER n 1 399 HIS n 1 400 HIS n 1 401 HIS n 1 402 HIS n 1 403 HIS n 1 404 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BACE1, BACE, KIAA1149' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BACE1_HUMAN _struct_ref.pdbx_db_accession P56817 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW EGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCG AGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRL PKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQ DDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYNIPQTDES ; _struct_ref.pdbx_align_begin 58 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UDQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 396 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P56817 _struct_ref_seq.db_align_beg 58 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 453 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -3 _struct_ref_seq.pdbx_auth_seq_align_end 392 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UDQ ARG A 397 ? UNP P56817 ? ? 'EXPRESSION TAG' 393 1 1 3UDQ SER A 398 ? UNP P56817 ? ? 'EXPRESSION TAG' 394 2 1 3UDQ HIS A 399 ? UNP P56817 ? ? 'EXPRESSION TAG' 395 3 1 3UDQ HIS A 400 ? UNP P56817 ? ? 'EXPRESSION TAG' 396 4 1 3UDQ HIS A 401 ? UNP P56817 ? ? 'EXPRESSION TAG' 397 5 1 3UDQ HIS A 402 ? UNP P56817 ? ? 'EXPRESSION TAG' 398 6 1 3UDQ HIS A 403 ? UNP P56817 ? ? 'EXPRESSION TAG' 399 7 1 3UDQ HIS A 404 ? UNP P56817 ? ? 'EXPRESSION TAG' 400 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 09E non-polymer . ;(4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate ; ? 'C21 H19 Br N2 O5 S' 491.355 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3UDQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'protein in sodium borate, pH 8.5, reservoir: 30% PEG200, 0.1 M sodium acetate, pH 5.2-5.4, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2011-04-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3UDQ _reflns.d_resolution_high 2.729 _reflns.d_resolution_low 100.052 _reflns.number_all 10639 _reflns.number_obs 10639 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.pdbx_Rsym_value 0.091 _reflns.pdbx_redundancy 4.8 _reflns.percent_possible_obs 99.9 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 56.41 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.729 2.880 ? 7405 ? 0.442 1.80 0.442 ? 4.8 ? 1535 99.9 1 1 2.880 3.050 ? 6995 ? 0.277 2.80 0.277 ? 4.8 ? 1456 100.0 2 1 3.050 3.260 ? 6471 ? 0.192 4.10 0.192 ? 4.8 ? 1337 100.0 3 1 3.260 3.520 ? 6207 ? 0.128 6.10 0.128 ? 4.8 ? 1283 100.0 4 1 3.520 3.860 ? 5655 ? 0.081 9.60 0.081 ? 4.8 ? 1177 99.9 5 1 3.860 4.320 ? 5132 ? 0.062 12.50 0.062 ? 4.8 ? 1065 99.9 6 1 4.320 4.980 ? 4582 ? 0.042 18.10 0.042 ? 4.8 ? 958 99.9 7 1 4.980 6.100 ? 3820 ? 0.050 15.30 0.050 ? 4.8 ? 803 99.9 8 1 6.100 8.630 ? 3000 ? 0.045 17.20 0.045 ? 4.6 ? 649 100.0 9 1 8.630 100.052 ? 1584 ? 0.022 29.10 0.022 ? 4.2 ? 376 97.6 10 1 # _refine.entry_id 3UDQ _refine.ls_d_res_high 2.730 _refine.ls_d_res_low 51.91 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.79 _refine.ls_number_reflns_obs 10610 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1592 _refine.ls_R_factor_R_work 0.1548 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2435 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.27 _refine.ls_number_reflns_R_free 559 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.8975 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 7.9953 _refine.aniso_B[2][2] 8.0961 _refine.aniso_B[3][3] -16.0914 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9273 _refine.correlation_coeff_Fo_to_Fc_free 0.8530 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.368 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'RIGID BODY REFINEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 148.580 _refine.B_iso_min 8.660 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? # _refine_analyze.entry_id 3UDQ _refine_analyze.Luzzati_coordinate_error_obs 0.255 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3103 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 3252 _refine_hist.d_res_high 2.730 _refine_hist.d_res_low 51.91 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 1080 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 75 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 469 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 3220 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 413 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 3663 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 3220 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 4387 1.200 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.100 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 20.030 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.730 _refine_ls_shell.d_res_low 3.050 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 99.79 _refine_ls_shell.number_reflns_R_work 2835 _refine_ls_shell.R_factor_all 0.1775 _refine_ls_shell.R_factor_R_work 0.1713 _refine_ls_shell.R_factor_R_free 0.3042 _refine_ls_shell.percent_reflns_R_free 5.03 _refine_ls_shell.number_reflns_R_free 150 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2985 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UDQ _struct.title 'Crystal Structure of BACE with Compound 13' _struct.pdbx_descriptor 'Beta-secretase 1 (E.C.3.4.23.46)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UDQ _struct_keywords.text 'HYDROLASE-HYDROLASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 3 ? VAL A 7 ? PHE A -1 VAL A 3 5 ? 5 HELX_P HELX_P2 2 GLN A 57 ? SER A 61 ? GLN A 53 SER A 57 5 ? 5 HELX_P HELX_P3 3 TYR A 127 ? ALA A 131 ? TYR A 123 ALA A 127 5 ? 5 HELX_P HELX_P4 4 PRO A 139 ? THR A 148 ? PRO A 135 THR A 144 1 ? 10 HELX_P HELX_P5 5 ASP A 220 ? TYR A 226 ? ASP A 216 TYR A 222 5 ? 7 HELX_P HELX_P6 6 LYS A 242 ? SER A 256 ? LYS A 238 SER A 252 1 ? 15 HELX_P HELX_P7 7 PRO A 262 ? LEU A 267 ? PRO A 258 LEU A 263 1 ? 6 HELX_P HELX_P8 8 PRO A 280 ? PHE A 284 ? PRO A 276 PHE A 280 5 ? 5 HELX_P HELX_P9 9 LEU A 305 ? TYR A 309 ? LEU A 301 TYR A 305 1 ? 5 HELX_P HELX_P10 10 GLY A 338 ? GLU A 343 ? GLY A 334 GLU A 339 1 ? 6 HELX_P HELX_P11 11 THR A 393 ? HIS A 399 ? THR A 389 HIS A 395 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 159 SG ? ? ? 1_555 A CYS 363 SG ? ? A CYS 155 A CYS 359 1_555 ? ? ? ? ? ? ? 2.013 ? disulf2 disulf ? ? A CYS 221 SG ? ? ? 1_555 A CYS 386 SG ? ? A CYS 217 A CYS 382 1_555 ? ? ? ? ? ? ? 2.024 ? disulf3 disulf ? ? A CYS 273 SG ? ? ? 1_555 A CYS 323 SG ? ? A CYS 269 A CYS 319 1_555 ? ? ? ? ? ? ? 2.025 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 26 A . ? SER 22 A PRO 27 A ? PRO 23 A 1 0.13 2 ARG 132 A . ? ARG 128 A PRO 133 A ? PRO 129 A 1 2.00 3 TYR 226 A . ? TYR 222 A ASP 227 A ? ASP 223 A 1 0.08 4 GLY 376 A . ? GLY 372 A PRO 377 A ? PRO 373 A 1 0.43 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 13 ? C ? 5 ? D ? 4 ? E ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel B 11 12 ? anti-parallel B 12 13 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 65 ? TYR A 75 ? ARG A 61 TYR A 71 A 2 GLY A 78 ? SER A 90 ? GLY A 74 SER A 86 A 3 GLY A 17 ? VAL A 24 ? GLY A 13 VAL A 20 A 4 LEU A 10 ? LYS A 13 ? LEU A 6 LYS A 9 A 5 SER A 173 ? ILE A 180 ? SER A 169 ILE A 176 A 6 PHE A 154 ? CYS A 159 ? PHE A 150 CYS A 155 A 7 PHE A 345 ? ASP A 350 ? PHE A 341 ASP A 346 A 8 ARG A 355 ? SER A 361 ? ARG A 351 SER A 357 A 9 TYR A 188 ? PRO A 196 ? TYR A 184 PRO A 192 B 1 ARG A 65 ? TYR A 75 ? ARG A 61 TYR A 71 B 2 GLY A 78 ? SER A 90 ? GLY A 74 SER A 86 B 3 VAL A 99 ? ASP A 110 ? VAL A 95 ASP A 106 B 4 PHE A 42 ? GLY A 45 ? PHE A 38 GLY A 41 B 5 GLY A 121 ? GLY A 124 ? GLY A 117 GLY A 120 B 6 GLN A 29 ? ASP A 36 ? GLN A 25 ASP A 32 B 7 GLY A 17 ? VAL A 24 ? GLY A 13 VAL A 20 B 8 LEU A 10 ? LYS A 13 ? LEU A 6 LYS A 9 B 9 SER A 173 ? ILE A 180 ? SER A 169 ILE A 176 B 10 PHE A 154 ? CYS A 159 ? PHE A 150 CYS A 155 B 11 PHE A 345 ? ASP A 350 ? PHE A 341 ASP A 346 B 12 ARG A 355 ? SER A 361 ? ARG A 351 SER A 357 B 13 TYR A 188 ? PRO A 196 ? TYR A 184 PRO A 192 C 1 GLN A 215 ? ASP A 216 ? GLN A 211 ASP A 212 C 2 ILE A 207 ? ILE A 212 ? ILE A 203 ILE A 208 C 3 ILE A 287 ? MET A 292 ? ILE A 283 MET A 288 C 4 SER A 299 ? ILE A 304 ? SER A 295 ILE A 300 C 5 ALA A 373 ? GLU A 375 ? ALA A 369 GLU A 371 D 1 SER A 229 ? VAL A 231 ? SER A 225 VAL A 227 D 2 THR A 335 ? MET A 337 ? THR A 331 MET A 333 D 3 LEU A 238 ? PRO A 241 ? LEU A 234 PRO A 237 D 4 ILE A 328 ? SER A 331 ? ILE A 324 SER A 327 E 1 VAL A 272 ? GLN A 275 ? VAL A 268 GLN A 271 E 2 ASP A 321 ? PHE A 326 ? ASP A 317 PHE A 322 E 3 LEU A 310 ? PRO A 312 ? LEU A 306 PRO A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 73 ? N VAL A 69 O TRP A 80 ? O TRP A 76 A 2 3 O SER A 90 ? O SER A 86 N THR A 23 ? N THR A 19 A 3 4 O TYR A 19 ? O TYR A 15 N ARG A 11 ? N ARG A 7 A 4 5 N GLY A 12 ? N GLY A 8 O VAL A 174 ? O VAL A 170 A 5 6 O ILE A 179 ? O ILE A 175 N SER A 155 ? N SER A 151 A 6 7 N PHE A 154 ? N PHE A 150 O PHE A 349 ? O PHE A 345 A 7 8 N VAL A 348 ? N VAL A 344 O GLY A 357 ? O GLY A 353 A 8 9 O ILE A 356 ? O ILE A 352 N THR A 195 ? N THR A 191 B 1 2 N VAL A 73 ? N VAL A 69 O TRP A 80 ? O TRP A 76 B 2 3 N VAL A 89 ? N VAL A 85 O VAL A 99 ? O VAL A 95 B 3 4 O ILE A 106 ? O ILE A 102 N VAL A 44 ? N VAL A 40 B 4 5 N ALA A 43 ? N ALA A 39 O ILE A 122 ? O ILE A 118 B 5 6 O GLY A 121 ? O GLY A 117 N LEU A 34 ? N LEU A 30 B 6 7 O ILE A 33 ? O ILE A 29 N VAL A 20 ? N VAL A 16 B 7 8 O TYR A 19 ? O TYR A 15 N ARG A 11 ? N ARG A 7 B 8 9 N GLY A 12 ? N GLY A 8 O VAL A 174 ? O VAL A 170 B 9 10 O ILE A 179 ? O ILE A 175 N SER A 155 ? N SER A 151 B 10 11 N PHE A 154 ? N PHE A 150 O PHE A 349 ? O PHE A 345 B 11 12 N VAL A 348 ? N VAL A 344 O GLY A 357 ? O GLY A 353 B 12 13 O ILE A 356 ? O ILE A 352 N THR A 195 ? N THR A 191 C 1 2 O GLN A 215 ? O GLN A 211 N ILE A 212 ? N ILE A 208 C 2 3 N VAL A 208 ? N VAL A 204 O TYR A 290 ? O TYR A 286 C 3 4 N ILE A 287 ? N ILE A 283 O ILE A 304 ? O ILE A 300 C 4 5 N ARG A 301 ? N ARG A 297 O GLU A 375 ? O GLU A 371 D 1 2 N ILE A 230 ? N ILE A 226 O MET A 337 ? O MET A 333 D 2 3 O VAL A 336 ? O VAL A 332 N ARG A 239 ? N ARG A 235 D 3 4 N LEU A 240 ? N LEU A 236 O SER A 329 ? O SER A 325 E 1 2 N TRP A 274 ? N TRP A 270 O ASP A 322 ? O ASP A 318 E 2 3 O LYS A 325 ? O LYS A 321 N ARG A 311 ? N ARG A 307 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 09E A 4000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 LEU A 34 ? LEU A 30 . ? 1_555 ? 2 AC1 14 ASP A 36 ? ASP A 32 . ? 1_555 ? 3 AC1 14 GLY A 38 ? GLY A 34 . ? 1_555 ? 4 AC1 14 TYR A 75 ? TYR A 71 . ? 1_555 ? 5 AC1 14 THR A 76 ? THR A 72 . ? 1_555 ? 6 AC1 14 GLN A 77 ? GLN A 73 . ? 1_555 ? 7 AC1 14 PHE A 112 ? PHE A 108 . ? 1_555 ? 8 AC1 14 ILE A 130 ? ILE A 126 . ? 1_555 ? 9 AC1 14 ARG A 132 ? ARG A 128 . ? 1_555 ? 10 AC1 14 TYR A 202 ? TYR A 198 . ? 1_555 ? 11 AC1 14 ASP A 232 ? ASP A 228 . ? 1_555 ? 12 AC1 14 GLY A 234 ? GLY A 230 . ? 1_555 ? 13 AC1 14 HOH C . ? HOH A 471 . ? 1_555 ? 14 AC1 14 HOH C . ? HOH A 509 . ? 1_555 ? # _atom_sites.entry_id 3UDQ _atom_sites.fract_transf_matrix[1][1] 0.013429 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009632 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009995 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 PHE 3 -1 -1 PHE PHE A . n A 1 4 VAL 4 0 0 VAL VAL A . n A 1 5 GLU 5 1 1 GLU GLU A . n A 1 6 MET 6 2 2 MET MET A . n A 1 7 VAL 7 3 3 VAL VAL A . n A 1 8 ASP 8 4 4 ASP ASP A . n A 1 9 ASN 9 5 5 ASN ASN A . n A 1 10 LEU 10 6 6 LEU LEU A . n A 1 11 ARG 11 7 7 ARG ARG A . n A 1 12 GLY 12 8 8 GLY GLY A . n A 1 13 LYS 13 9 9 LYS LYS A . n A 1 14 SER 14 10 10 SER SER A . n A 1 15 GLY 15 11 11 GLY GLY A . n A 1 16 GLN 16 12 12 GLN GLN A . n A 1 17 GLY 17 13 13 GLY GLY A . n A 1 18 TYR 18 14 14 TYR TYR A . n A 1 19 TYR 19 15 15 TYR TYR A . n A 1 20 VAL 20 16 16 VAL VAL A . n A 1 21 GLU 21 17 17 GLU GLU A . n A 1 22 MET 22 18 18 MET MET A . n A 1 23 THR 23 19 19 THR THR A . n A 1 24 VAL 24 20 20 VAL VAL A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 PRO 27 23 23 PRO PRO A . n A 1 28 PRO 28 24 24 PRO PRO A . n A 1 29 GLN 29 25 25 GLN GLN A . n A 1 30 THR 30 26 26 THR THR A . n A 1 31 LEU 31 27 27 LEU LEU A . n A 1 32 ASN 32 28 28 ASN ASN A . n A 1 33 ILE 33 29 29 ILE ILE A . n A 1 34 LEU 34 30 30 LEU LEU A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 ASP 36 32 32 ASP ASP A . n A 1 37 THR 37 33 33 THR THR A . n A 1 38 GLY 38 34 34 GLY GLY A . n A 1 39 SER 39 35 35 SER SER A . n A 1 40 SER 40 36 36 SER SER A . n A 1 41 ASN 41 37 37 ASN ASN A . n A 1 42 PHE 42 38 38 PHE PHE A . n A 1 43 ALA 43 39 39 ALA ALA A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 GLY 45 41 41 GLY GLY A . n A 1 46 ALA 46 42 42 ALA ALA A . n A 1 47 ALA 47 43 43 ALA ALA A . n A 1 48 PRO 48 44 44 PRO PRO A . n A 1 49 HIS 49 45 45 HIS HIS A . n A 1 50 PRO 50 46 46 PRO PRO A . n A 1 51 PHE 51 47 47 PHE PHE A . n A 1 52 LEU 52 48 48 LEU LEU A . n A 1 53 HIS 53 49 49 HIS HIS A . n A 1 54 ARG 54 50 50 ARG ARG A . n A 1 55 TYR 55 51 51 TYR TYR A . n A 1 56 TYR 56 52 52 TYR TYR A . n A 1 57 GLN 57 53 53 GLN GLN A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 GLN 59 55 55 GLN GLN A . n A 1 60 LEU 60 56 56 LEU LEU A . n A 1 61 SER 61 57 57 SER SER A . n A 1 62 SER 62 58 58 SER SER A . n A 1 63 THR 63 59 59 THR THR A . n A 1 64 TYR 64 60 60 TYR TYR A . n A 1 65 ARG 65 61 61 ARG ARG A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 LEU 67 63 63 LEU LEU A . n A 1 68 ARG 68 64 64 ARG ARG A . n A 1 69 LYS 69 65 65 LYS LYS A . n A 1 70 GLY 70 66 66 GLY GLY A . n A 1 71 VAL 71 67 67 VAL VAL A . n A 1 72 TYR 72 68 68 TYR TYR A . n A 1 73 VAL 73 69 69 VAL VAL A . n A 1 74 PRO 74 70 70 PRO PRO A . n A 1 75 TYR 75 71 71 TYR TYR A . n A 1 76 THR 76 72 72 THR THR A . n A 1 77 GLN 77 73 73 GLN GLN A . n A 1 78 GLY 78 74 74 GLY GLY A . n A 1 79 LYS 79 75 75 LYS LYS A . n A 1 80 TRP 80 76 76 TRP TRP A . n A 1 81 GLU 81 77 77 GLU GLU A . n A 1 82 GLY 82 78 78 GLY GLY A . n A 1 83 GLU 83 79 79 GLU GLU A . n A 1 84 LEU 84 80 80 LEU LEU A . n A 1 85 GLY 85 81 81 GLY GLY A . n A 1 86 THR 86 82 82 THR THR A . n A 1 87 ASP 87 83 83 ASP ASP A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 VAL 89 85 85 VAL VAL A . n A 1 90 SER 90 86 86 SER SER A . n A 1 91 ILE 91 87 87 ILE ILE A . n A 1 92 PRO 92 88 88 PRO PRO A . n A 1 93 HIS 93 89 89 HIS HIS A . n A 1 94 GLY 94 90 90 GLY GLY A . n A 1 95 PRO 95 91 91 PRO PRO A . n A 1 96 ASN 96 92 92 ASN ASN A . n A 1 97 VAL 97 93 93 VAL VAL A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 VAL 99 95 95 VAL VAL A . n A 1 100 ARG 100 96 96 ARG ARG A . n A 1 101 ALA 101 97 97 ALA ALA A . n A 1 102 ASN 102 98 98 ASN ASN A . n A 1 103 ILE 103 99 99 ILE ILE A . n A 1 104 ALA 104 100 100 ALA ALA A . n A 1 105 ALA 105 101 101 ALA ALA A . n A 1 106 ILE 106 102 102 ILE ILE A . n A 1 107 THR 107 103 103 THR THR A . n A 1 108 GLU 108 104 104 GLU GLU A . n A 1 109 SER 109 105 105 SER SER A . n A 1 110 ASP 110 106 106 ASP ASP A . n A 1 111 LYS 111 107 107 LYS LYS A . n A 1 112 PHE 112 108 108 PHE PHE A . n A 1 113 PHE 113 109 109 PHE PHE A . n A 1 114 ILE 114 110 110 ILE ILE A . n A 1 115 ASN 115 111 111 ASN ASN A . n A 1 116 GLY 116 112 112 GLY GLY A . n A 1 117 SER 117 113 113 SER SER A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 TRP 119 115 115 TRP TRP A . n A 1 120 GLU 120 116 116 GLU GLU A . n A 1 121 GLY 121 117 117 GLY GLY A . n A 1 122 ILE 122 118 118 ILE ILE A . n A 1 123 LEU 123 119 119 LEU LEU A . n A 1 124 GLY 124 120 120 GLY GLY A . n A 1 125 LEU 125 121 121 LEU LEU A . n A 1 126 ALA 126 122 122 ALA ALA A . n A 1 127 TYR 127 123 123 TYR TYR A . n A 1 128 ALA 128 124 124 ALA ALA A . n A 1 129 GLU 129 125 125 GLU GLU A . n A 1 130 ILE 130 126 126 ILE ILE A . n A 1 131 ALA 131 127 127 ALA ALA A . n A 1 132 ARG 132 128 128 ARG ARG A . n A 1 133 PRO 133 129 129 PRO PRO A . n A 1 134 ASP 134 130 130 ASP ASP A . n A 1 135 ASP 135 131 131 ASP ASP A . n A 1 136 SER 136 132 132 SER SER A . n A 1 137 LEU 137 133 133 LEU LEU A . n A 1 138 GLU 138 134 134 GLU GLU A . n A 1 139 PRO 139 135 135 PRO PRO A . n A 1 140 PHE 140 136 136 PHE PHE A . n A 1 141 PHE 141 137 137 PHE PHE A . n A 1 142 ASP 142 138 138 ASP ASP A . n A 1 143 SER 143 139 139 SER SER A . n A 1 144 LEU 144 140 140 LEU LEU A . n A 1 145 VAL 145 141 141 VAL VAL A . n A 1 146 LYS 146 142 142 LYS LYS A . n A 1 147 GLN 147 143 143 GLN GLN A . n A 1 148 THR 148 144 144 THR THR A . n A 1 149 HIS 149 145 145 HIS HIS A . n A 1 150 VAL 150 146 146 VAL VAL A . n A 1 151 PRO 151 147 147 PRO PRO A . n A 1 152 ASN 152 148 148 ASN ASN A . n A 1 153 LEU 153 149 149 LEU LEU A . n A 1 154 PHE 154 150 150 PHE PHE A . n A 1 155 SER 155 151 151 SER SER A . n A 1 156 LEU 156 152 152 LEU LEU A . n A 1 157 GLN 157 153 153 GLN GLN A . n A 1 158 LEU 158 154 154 LEU LEU A . n A 1 159 CYS 159 155 155 CYS CYS A . n A 1 160 GLY 160 156 156 GLY GLY A . n A 1 161 ALA 161 157 157 ALA ALA A . n A 1 162 GLY 162 158 ? ? ? A . n A 1 163 PHE 163 159 ? ? ? A . n A 1 164 PRO 164 160 ? ? ? A . n A 1 165 LEU 165 161 ? ? ? A . n A 1 166 ASN 166 162 ? ? ? A . n A 1 167 GLN 167 163 ? ? ? A . n A 1 168 SER 168 164 164 SER SER A . n A 1 169 GLU 169 165 165 GLU GLU A . n A 1 170 VAL 170 166 166 VAL VAL A . n A 1 171 LEU 171 167 167 LEU LEU A . n A 1 172 ALA 172 168 168 ALA ALA A . n A 1 173 SER 173 169 169 SER SER A . n A 1 174 VAL 174 170 170 VAL VAL A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLY 176 172 172 GLY GLY A . n A 1 177 SER 177 173 173 SER SER A . n A 1 178 MET 178 174 174 MET MET A . n A 1 179 ILE 179 175 175 ILE ILE A . n A 1 180 ILE 180 176 176 ILE ILE A . n A 1 181 GLY 181 177 177 GLY GLY A . n A 1 182 GLY 182 178 178 GLY GLY A . n A 1 183 ILE 183 179 179 ILE ILE A . n A 1 184 ASP 184 180 180 ASP ASP A . n A 1 185 HIS 185 181 181 HIS HIS A . n A 1 186 SER 186 182 182 SER SER A . n A 1 187 LEU 187 183 183 LEU LEU A . n A 1 188 TYR 188 184 184 TYR TYR A . n A 1 189 THR 189 185 185 THR THR A . n A 1 190 GLY 190 186 186 GLY GLY A . n A 1 191 SER 191 187 187 SER SER A . n A 1 192 LEU 192 188 188 LEU LEU A . n A 1 193 TRP 193 189 189 TRP TRP A . n A 1 194 TYR 194 190 190 TYR TYR A . n A 1 195 THR 195 191 191 THR THR A . n A 1 196 PRO 196 192 192 PRO PRO A . n A 1 197 ILE 197 193 193 ILE ILE A . n A 1 198 ARG 198 194 194 ARG ARG A . n A 1 199 ARG 199 195 195 ARG ARG A . n A 1 200 GLU 200 196 196 GLU GLU A . n A 1 201 TRP 201 197 197 TRP TRP A . n A 1 202 TYR 202 198 198 TYR TYR A . n A 1 203 TYR 203 199 199 TYR TYR A . n A 1 204 GLU 204 200 200 GLU GLU A . n A 1 205 VAL 205 201 201 VAL VAL A . n A 1 206 ILE 206 202 202 ILE ILE A . n A 1 207 ILE 207 203 203 ILE ILE A . n A 1 208 VAL 208 204 204 VAL VAL A . n A 1 209 ARG 209 205 205 ARG ARG A . n A 1 210 VAL 210 206 206 VAL VAL A . n A 1 211 GLU 211 207 207 GLU GLU A . n A 1 212 ILE 212 208 208 ILE ILE A . n A 1 213 ASN 213 209 209 ASN ASN A . n A 1 214 GLY 214 210 210 GLY GLY A . n A 1 215 GLN 215 211 211 GLN GLN A . n A 1 216 ASP 216 212 212 ASP ASP A . n A 1 217 LEU 217 213 213 LEU LEU A . n A 1 218 LYS 218 214 214 LYS LYS A . n A 1 219 MET 219 215 215 MET MET A . n A 1 220 ASP 220 216 216 ASP ASP A . n A 1 221 CYS 221 217 217 CYS CYS A . n A 1 222 LYS 222 218 218 LYS LYS A . n A 1 223 GLU 223 219 219 GLU GLU A . n A 1 224 TYR 224 220 220 TYR TYR A . n A 1 225 ASN 225 221 221 ASN ASN A . n A 1 226 TYR 226 222 222 TYR TYR A . n A 1 227 ASP 227 223 223 ASP ASP A . n A 1 228 LYS 228 224 224 LYS LYS A . n A 1 229 SER 229 225 225 SER SER A . n A 1 230 ILE 230 226 226 ILE ILE A . n A 1 231 VAL 231 227 227 VAL VAL A . n A 1 232 ASP 232 228 228 ASP ASP A . n A 1 233 SER 233 229 229 SER SER A . n A 1 234 GLY 234 230 230 GLY GLY A . n A 1 235 THR 235 231 231 THR THR A . n A 1 236 THR 236 232 232 THR THR A . n A 1 237 ASN 237 233 233 ASN ASN A . n A 1 238 LEU 238 234 234 LEU LEU A . n A 1 239 ARG 239 235 235 ARG ARG A . n A 1 240 LEU 240 236 236 LEU LEU A . n A 1 241 PRO 241 237 237 PRO PRO A . n A 1 242 LYS 242 238 238 LYS LYS A . n A 1 243 LYS 243 239 239 LYS LYS A . n A 1 244 VAL 244 240 240 VAL VAL A . n A 1 245 PHE 245 241 241 PHE PHE A . n A 1 246 GLU 246 242 242 GLU GLU A . n A 1 247 ALA 247 243 243 ALA ALA A . n A 1 248 ALA 248 244 244 ALA ALA A . n A 1 249 VAL 249 245 245 VAL VAL A . n A 1 250 LYS 250 246 246 LYS LYS A . n A 1 251 SER 251 247 247 SER SER A . n A 1 252 ILE 252 248 248 ILE ILE A . n A 1 253 LYS 253 249 249 LYS LYS A . n A 1 254 ALA 254 250 250 ALA ALA A . n A 1 255 ALA 255 251 251 ALA ALA A . n A 1 256 SER 256 252 252 SER SER A . n A 1 257 SER 257 253 253 SER SER A . n A 1 258 THR 258 254 254 THR THR A . n A 1 259 GLU 259 255 255 GLU GLU A . n A 1 260 LYS 260 256 256 LYS LYS A . n A 1 261 PHE 261 257 257 PHE PHE A . n A 1 262 PRO 262 258 258 PRO PRO A . n A 1 263 ASP 263 259 259 ASP ASP A . n A 1 264 GLY 264 260 260 GLY GLY A . n A 1 265 PHE 265 261 261 PHE PHE A . n A 1 266 TRP 266 262 262 TRP TRP A . n A 1 267 LEU 267 263 263 LEU LEU A . n A 1 268 GLY 268 264 264 GLY GLY A . n A 1 269 GLU 269 265 265 GLU GLU A . n A 1 270 GLN 270 266 266 GLN GLN A . n A 1 271 LEU 271 267 267 LEU LEU A . n A 1 272 VAL 272 268 268 VAL VAL A . n A 1 273 CYS 273 269 269 CYS CYS A . n A 1 274 TRP 274 270 270 TRP TRP A . n A 1 275 GLN 275 271 271 GLN GLN A . n A 1 276 ALA 276 272 272 ALA ALA A . n A 1 277 GLY 277 273 273 GLY GLY A . n A 1 278 THR 278 274 274 THR THR A . n A 1 279 THR 279 275 275 THR THR A . n A 1 280 PRO 280 276 276 PRO PRO A . n A 1 281 TRP 281 277 277 TRP TRP A . n A 1 282 ASN 282 278 278 ASN ASN A . n A 1 283 ILE 283 279 279 ILE ILE A . n A 1 284 PHE 284 280 280 PHE PHE A . n A 1 285 PRO 285 281 281 PRO PRO A . n A 1 286 VAL 286 282 282 VAL VAL A . n A 1 287 ILE 287 283 283 ILE ILE A . n A 1 288 SER 288 284 284 SER SER A . n A 1 289 LEU 289 285 285 LEU LEU A . n A 1 290 TYR 290 286 286 TYR TYR A . n A 1 291 LEU 291 287 287 LEU LEU A . n A 1 292 MET 292 288 288 MET MET A . n A 1 293 GLY 293 289 289 GLY GLY A . n A 1 294 GLU 294 290 290 GLU GLU A . n A 1 295 VAL 295 291 291 VAL VAL A . n A 1 296 THR 296 292 292 THR THR A . n A 1 297 ASN 297 293 293 ASN ASN A . n A 1 298 GLN 298 294 294 GLN GLN A . n A 1 299 SER 299 295 295 SER SER A . n A 1 300 PHE 300 296 296 PHE PHE A . n A 1 301 ARG 301 297 297 ARG ARG A . n A 1 302 ILE 302 298 298 ILE ILE A . n A 1 303 THR 303 299 299 THR THR A . n A 1 304 ILE 304 300 300 ILE ILE A . n A 1 305 LEU 305 301 301 LEU LEU A . n A 1 306 PRO 306 302 302 PRO PRO A . n A 1 307 GLN 307 303 303 GLN GLN A . n A 1 308 GLN 308 304 304 GLN GLN A . n A 1 309 TYR 309 305 305 TYR TYR A . n A 1 310 LEU 310 306 306 LEU LEU A . n A 1 311 ARG 311 307 307 ARG ARG A . n A 1 312 PRO 312 308 308 PRO PRO A . n A 1 313 VAL 313 309 309 VAL VAL A . n A 1 314 GLU 314 310 310 GLU GLU A . n A 1 315 ASP 315 311 311 ASP ASP A . n A 1 316 VAL 316 312 312 VAL VAL A . n A 1 317 ALA 317 313 313 ALA ALA A . n A 1 318 THR 318 314 314 THR THR A . n A 1 319 SER 319 315 315 SER SER A . n A 1 320 GLN 320 316 316 GLN GLN A . n A 1 321 ASP 321 317 317 ASP ASP A . n A 1 322 ASP 322 318 318 ASP ASP A . n A 1 323 CYS 323 319 319 CYS CYS A . n A 1 324 TYR 324 320 320 TYR TYR A . n A 1 325 LYS 325 321 321 LYS LYS A . n A 1 326 PHE 326 322 322 PHE PHE A . n A 1 327 ALA 327 323 323 ALA ALA A . n A 1 328 ILE 328 324 324 ILE ILE A . n A 1 329 SER 329 325 325 SER SER A . n A 1 330 GLN 330 326 326 GLN GLN A . n A 1 331 SER 331 327 327 SER SER A . n A 1 332 SER 332 328 328 SER SER A . n A 1 333 THR 333 329 329 THR THR A . n A 1 334 GLY 334 330 330 GLY GLY A . n A 1 335 THR 335 331 331 THR THR A . n A 1 336 VAL 336 332 332 VAL VAL A . n A 1 337 MET 337 333 333 MET MET A . n A 1 338 GLY 338 334 334 GLY GLY A . n A 1 339 ALA 339 335 335 ALA ALA A . n A 1 340 VAL 340 336 336 VAL VAL A . n A 1 341 ILE 341 337 337 ILE ILE A . n A 1 342 MET 342 338 338 MET MET A . n A 1 343 GLU 343 339 339 GLU GLU A . n A 1 344 GLY 344 340 340 GLY GLY A . n A 1 345 PHE 345 341 341 PHE PHE A . n A 1 346 TYR 346 342 342 TYR TYR A . n A 1 347 VAL 347 343 343 VAL VAL A . n A 1 348 VAL 348 344 344 VAL VAL A . n A 1 349 PHE 349 345 345 PHE PHE A . n A 1 350 ASP 350 346 346 ASP ASP A . n A 1 351 ARG 351 347 347 ARG ARG A . n A 1 352 ALA 352 348 348 ALA ALA A . n A 1 353 ARG 353 349 349 ARG ARG A . n A 1 354 LYS 354 350 350 LYS LYS A . n A 1 355 ARG 355 351 351 ARG ARG A . n A 1 356 ILE 356 352 352 ILE ILE A . n A 1 357 GLY 357 353 353 GLY GLY A . n A 1 358 PHE 358 354 354 PHE PHE A . n A 1 359 ALA 359 355 355 ALA ALA A . n A 1 360 VAL 360 356 356 VAL VAL A . n A 1 361 SER 361 357 357 SER SER A . n A 1 362 ALA 362 358 358 ALA ALA A . n A 1 363 CYS 363 359 359 CYS CYS A . n A 1 364 HIS 364 360 360 HIS HIS A . n A 1 365 VAL 365 361 361 VAL VAL A . n A 1 366 HIS 366 362 362 HIS HIS A . n A 1 367 ASP 367 363 363 ASP ASP A . n A 1 368 GLU 368 364 364 GLU GLU A . n A 1 369 PHE 369 365 365 PHE PHE A . n A 1 370 ARG 370 366 366 ARG ARG A . n A 1 371 THR 371 367 367 THR THR A . n A 1 372 ALA 372 368 368 ALA ALA A . n A 1 373 ALA 373 369 369 ALA ALA A . n A 1 374 VAL 374 370 370 VAL VAL A . n A 1 375 GLU 375 371 371 GLU GLU A . n A 1 376 GLY 376 372 372 GLY GLY A . n A 1 377 PRO 377 373 373 PRO PRO A . n A 1 378 PHE 378 374 374 PHE PHE A . n A 1 379 VAL 379 375 375 VAL VAL A . n A 1 380 THR 380 376 376 THR THR A . n A 1 381 LEU 381 377 377 LEU LEU A . n A 1 382 ASP 382 378 378 ASP ASP A . n A 1 383 MET 383 379 379 MET MET A . n A 1 384 GLU 384 380 380 GLU GLU A . n A 1 385 ASP 385 381 381 ASP ASP A . n A 1 386 CYS 386 382 382 CYS CYS A . n A 1 387 GLY 387 383 383 GLY GLY A . n A 1 388 TYR 388 384 384 TYR TYR A . n A 1 389 ASN 389 385 385 ASN ASN A . n A 1 390 ILE 390 386 386 ILE ILE A . n A 1 391 PRO 391 387 387 PRO PRO A . n A 1 392 GLN 392 388 388 GLN GLN A . n A 1 393 THR 393 389 389 THR THR A . n A 1 394 ASP 394 390 390 ASP ASP A . n A 1 395 GLU 395 391 391 GLU GLU A . n A 1 396 SER 396 392 392 SER SER A . n A 1 397 ARG 397 393 393 ARG ARG A . n A 1 398 SER 398 394 394 SER SER A . n A 1 399 HIS 399 395 395 HIS HIS A . n A 1 400 HIS 400 396 396 HIS HIS A . n A 1 401 HIS 401 397 397 HIS HIS A . n A 1 402 HIS 402 398 398 HIS HIS A . n A 1 403 HIS 403 399 ? ? ? A . n A 1 404 HIS 404 400 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 09E 1 4000 4000 09E PFE A . C 3 HOH 1 401 8 HOH HOH A . C 3 HOH 2 402 9 HOH HOH A . C 3 HOH 3 403 11 HOH HOH A . C 3 HOH 4 404 12 HOH HOH A . C 3 HOH 5 405 13 HOH HOH A . C 3 HOH 6 406 14 HOH HOH A . C 3 HOH 7 407 15 HOH HOH A . C 3 HOH 8 408 16 HOH HOH A . C 3 HOH 9 409 17 HOH HOH A . C 3 HOH 10 410 18 HOH HOH A . C 3 HOH 11 411 19 HOH HOH A . C 3 HOH 12 412 20 HOH HOH A . C 3 HOH 13 413 21 HOH HOH A . C 3 HOH 14 414 22 HOH HOH A . C 3 HOH 15 415 23 HOH HOH A . C 3 HOH 16 416 24 HOH HOH A . C 3 HOH 17 417 25 HOH HOH A . C 3 HOH 18 418 26 HOH HOH A . C 3 HOH 19 419 27 HOH HOH A . C 3 HOH 20 420 28 HOH HOH A . C 3 HOH 21 421 29 HOH HOH A . C 3 HOH 22 422 31 HOH HOH A . C 3 HOH 23 423 33 HOH HOH A . C 3 HOH 24 424 34 HOH HOH A . C 3 HOH 25 425 35 HOH HOH A . C 3 HOH 26 426 37 HOH HOH A . C 3 HOH 27 427 39 HOH HOH A . C 3 HOH 28 428 40 HOH HOH A . C 3 HOH 29 429 41 HOH HOH A . C 3 HOH 30 430 42 HOH HOH A . C 3 HOH 31 431 43 HOH HOH A . C 3 HOH 32 432 44 HOH HOH A . C 3 HOH 33 433 45 HOH HOH A . C 3 HOH 34 434 46 HOH HOH A . C 3 HOH 35 435 48 HOH HOH A . C 3 HOH 36 436 49 HOH HOH A . C 3 HOH 37 437 50 HOH HOH A . C 3 HOH 38 438 51 HOH HOH A . C 3 HOH 39 439 52 HOH HOH A . C 3 HOH 40 440 53 HOH HOH A . C 3 HOH 41 441 54 HOH HOH A . C 3 HOH 42 442 55 HOH HOH A . C 3 HOH 43 443 56 HOH HOH A . C 3 HOH 44 444 57 HOH HOH A . C 3 HOH 45 445 59 HOH HOH A . C 3 HOH 46 446 62 HOH HOH A . C 3 HOH 47 447 64 HOH HOH A . C 3 HOH 48 448 66 HOH HOH A . C 3 HOH 49 449 68 HOH HOH A . C 3 HOH 50 450 69 HOH HOH A . C 3 HOH 51 451 73 HOH HOH A . C 3 HOH 52 452 74 HOH HOH A . C 3 HOH 53 453 76 HOH HOH A . C 3 HOH 54 454 77 HOH HOH A . C 3 HOH 55 455 78 HOH HOH A . C 3 HOH 56 456 79 HOH HOH A . C 3 HOH 57 457 80 HOH HOH A . C 3 HOH 58 458 81 HOH HOH A . C 3 HOH 59 459 82 HOH HOH A . C 3 HOH 60 460 83 HOH HOH A . C 3 HOH 61 461 84 HOH HOH A . C 3 HOH 62 462 85 HOH HOH A . C 3 HOH 63 463 86 HOH HOH A . C 3 HOH 64 464 87 HOH HOH A . C 3 HOH 65 465 88 HOH HOH A . C 3 HOH 66 466 89 HOH HOH A . C 3 HOH 67 467 91 HOH HOH A . C 3 HOH 68 468 92 HOH HOH A . C 3 HOH 69 469 93 HOH HOH A . C 3 HOH 70 470 94 HOH HOH A . C 3 HOH 71 471 95 HOH HOH A . C 3 HOH 72 472 96 HOH HOH A . C 3 HOH 73 473 97 HOH HOH A . C 3 HOH 74 474 98 HOH HOH A . C 3 HOH 75 475 99 HOH HOH A . C 3 HOH 76 476 100 HOH HOH A . C 3 HOH 77 477 101 HOH HOH A . C 3 HOH 78 478 102 HOH HOH A . C 3 HOH 79 479 103 HOH HOH A . C 3 HOH 80 480 104 HOH HOH A . C 3 HOH 81 481 106 HOH HOH A . C 3 HOH 82 482 107 HOH HOH A . C 3 HOH 83 483 109 HOH HOH A . C 3 HOH 84 484 110 HOH HOH A . C 3 HOH 85 485 111 HOH HOH A . C 3 HOH 86 486 114 HOH HOH A . C 3 HOH 87 487 115 HOH HOH A . C 3 HOH 88 488 117 HOH HOH A . C 3 HOH 89 489 118 HOH HOH A . C 3 HOH 90 490 119 HOH HOH A . C 3 HOH 91 491 120 HOH HOH A . C 3 HOH 92 492 121 HOH HOH A . C 3 HOH 93 493 122 HOH HOH A . C 3 HOH 94 494 124 HOH HOH A . C 3 HOH 95 495 125 HOH HOH A . C 3 HOH 96 496 126 HOH HOH A . C 3 HOH 97 497 127 HOH HOH A . C 3 HOH 98 498 128 HOH HOH A . C 3 HOH 99 499 129 HOH HOH A . C 3 HOH 100 500 130 HOH HOH A . C 3 HOH 101 501 132 HOH HOH A . C 3 HOH 102 502 137 HOH HOH A . C 3 HOH 103 503 138 HOH HOH A . C 3 HOH 104 504 140 HOH HOH A . C 3 HOH 105 505 141 HOH HOH A . C 3 HOH 106 506 144 HOH HOH A . C 3 HOH 107 507 146 HOH HOH A . C 3 HOH 108 508 148 HOH HOH A . C 3 HOH 109 509 150 HOH HOH A . C 3 HOH 110 510 152 HOH HOH A . C 3 HOH 111 511 153 HOH HOH A . C 3 HOH 112 512 157 HOH HOH A . C 3 HOH 113 513 158 HOH HOH A . C 3 HOH 114 514 160 HOH HOH A . C 3 HOH 115 515 162 HOH HOH A . C 3 HOH 116 516 164 HOH HOH A . C 3 HOH 117 517 165 HOH HOH A . C 3 HOH 118 518 172 HOH HOH A . C 3 HOH 119 519 174 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-18 2 'Structure model' 1 1 2013-06-19 3 'Structure model' 1 2 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.type' 2 3 'Structure model' '_software.name' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 BUSTER-TNT 'BUSTER 2.11.2' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 d*TREK . ? ? ? ? 'data reduction' ? ? ? 5 autoBUSTER . ? ? ? ? phasing ? ? ? 6 BUSTER 2.11.2 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 89 ? ? -94.70 36.71 2 1 ALA A 101 ? ? -69.31 99.28 3 1 PHE A 108 ? ? -92.92 -62.23 4 1 THR A 144 ? ? -124.65 -168.48 5 1 ASN A 148 ? ? -68.62 66.06 6 1 TRP A 197 ? ? -141.35 -73.21 7 1 LYS A 238 ? ? -29.42 -58.52 8 1 ALA A 272 ? ? -32.85 119.09 9 1 ASN A 293 ? ? 100.14 -26.41 10 1 ALA A 323 ? ? -91.60 39.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 379 ? CG ? A MET 383 CG 2 1 Y 1 A MET 379 ? SD ? A MET 383 SD 3 1 Y 1 A MET 379 ? CE ? A MET 383 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A GLY 158 ? A GLY 162 4 1 Y 1 A PHE 159 ? A PHE 163 5 1 Y 1 A PRO 160 ? A PRO 164 6 1 Y 1 A LEU 161 ? A LEU 165 7 1 Y 1 A ASN 162 ? A ASN 166 8 1 Y 1 A GLN 163 ? A GLN 167 9 1 Y 1 A HIS 399 ? A HIS 403 10 1 Y 1 A HIS 400 ? A HIS 404 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(4S)-6-bromo-1,1-dioxido-3,4-dihydro-2H-thiochromen-4-yl (3S,5'R)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxylate ; 09E 3 water HOH #