HEADER OXIDOREDUCTASE 31-OCT-11 3UF0 TITLE CRYSTAL STRUCTURE OF A PUTATIVE NAD(P) DEPENDENT GLUCONATE 5- TITLE 2 DEHYDROGENASE FROM BEUTENBERGIA CAVERNAE(EFI TARGET EFI-502044) WITH TITLE 3 BOUND NADP (LOW OCCUPANCY) CAVEAT 3UF0 CHIRALITY ERROR AT C1D OF B NAP 274 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.125; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEUTENBERGIA CAVERNAE; SOURCE 3 ORGANISM_TAXID: 471853; SOURCE 4 STRAIN: DSM 12333; SOURCE 5 GENE: BCAV_0642; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS GLUCONATE, GLUCONATE 5-DEHYDRATASE, NAD(P) DEPENDENT, ENZYME FUNCTION KEYWDS 2 INITIATIVE, EFI, OXIDOREDUCTASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,B.HILLERICH,E.WASHINGTON,A.SCOTT GLENN, AUTHOR 2 S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER,J.A.GERLT, AUTHOR 3 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 13-SEP-23 3UF0 1 REMARK SEQADV REVDAT 3 24-JAN-18 3UF0 1 JRNL REVDAT 2 22-FEB-12 3UF0 1 REVDAT 1 23-NOV-11 3UF0 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,B.HILLERICH,E.WASHINGTON, JRNL AUTH 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK, JRNL AUTH 3 H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 4 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE NAD(P) DEPENDENT GLUCONATE JRNL TITL 2 5-DEHYDROGENASE FROM BEUTENBERGIA CAVERNAE(EFI TARGET JRNL TITL 3 EFI-502044) WITH BOUND NADP (LOW OCCUPANCY) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 34249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7548 - 4.5755 1.00 3001 164 0.1561 0.1873 REMARK 3 2 4.5755 - 3.6323 1.00 2828 166 0.1425 0.1530 REMARK 3 3 3.6323 - 3.1733 1.00 2802 168 0.1667 0.1852 REMARK 3 4 3.1733 - 2.8833 0.99 2771 152 0.1762 0.2121 REMARK 3 5 2.8833 - 2.6766 0.99 2780 124 0.1742 0.2031 REMARK 3 6 2.6766 - 2.5189 0.98 2705 148 0.1755 0.2136 REMARK 3 7 2.5189 - 2.3927 0.97 2689 135 0.1768 0.2822 REMARK 3 8 2.3927 - 2.2886 0.96 2665 146 0.1644 0.2281 REMARK 3 9 2.2886 - 2.2005 0.94 2620 125 0.1569 0.2062 REMARK 3 10 2.2005 - 2.1245 0.94 2588 131 0.1571 0.2225 REMARK 3 11 2.1245 - 2.0581 0.94 2602 121 0.1646 0.2419 REMARK 3 12 2.0581 - 1.9993 0.91 2486 132 0.1716 0.2151 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 45.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32790 REMARK 3 B22 (A**2) : -1.32790 REMARK 3 B33 (A**2) : 2.65590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3803 REMARK 3 ANGLE : 1.034 5208 REMARK 3 CHIRALITY : 0.095 597 REMARK 3 PLANARITY : 0.004 678 REMARK 3 DIHEDRAL : 17.725 1296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 26:64) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9518 -0.0619 28.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2911 REMARK 3 T33: 0.2956 T12: 0.0809 REMARK 3 T13: 0.0650 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 0.2407 L22: 0.5539 REMARK 3 L33: 0.4622 L12: -0.0787 REMARK 3 L13: 0.2409 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1394 S13: -0.0058 REMARK 3 S21: 0.0059 S22: 0.0335 S23: -0.3853 REMARK 3 S31: 0.1592 S32: 0.4201 S33: -0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 65:90) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1192 0.0648 20.7913 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.4297 REMARK 3 T33: 0.3747 T12: 0.0885 REMARK 3 T13: 0.1658 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 0.8563 REMARK 3 L33: 0.8378 L12: 0.4576 REMARK 3 L13: -0.0281 L23: 0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.0892 S13: 0.1958 REMARK 3 S21: -0.1232 S22: 0.0175 S23: -0.4958 REMARK 3 S31: 0.0970 S32: 0.3864 S33: 0.1263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 91:104) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5357 -3.9834 13.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.4462 T22: 0.2458 REMARK 3 T33: 0.2740 T12: 0.0900 REMARK 3 T13: 0.0385 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.9247 L22: 0.7471 REMARK 3 L33: 0.5735 L12: 0.7935 REMARK 3 L13: 0.1584 L23: 0.5501 REMARK 3 S TENSOR REMARK 3 S11: 0.2157 S12: 0.2419 S13: -0.3166 REMARK 3 S21: -0.6926 S22: -0.0365 S23: -0.1751 REMARK 3 S31: -0.3869 S32: -0.1356 S33: -0.0703 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 105:126) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0287 9.1473 21.7896 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.2673 REMARK 3 T33: 0.3758 T12: -0.0048 REMARK 3 T13: 0.0608 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4530 L22: 0.2362 REMARK 3 L33: 0.3582 L12: -0.2681 REMARK 3 L13: 0.0517 L23: 0.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.1664 S13: 0.2339 REMARK 3 S21: -0.1008 S22: 0.0275 S23: -0.2745 REMARK 3 S31: -0.1967 S32: 0.2437 S33: -0.0478 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 127:155) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9869 6.2626 18.4995 REMARK 3 T TENSOR REMARK 3 T11: 0.2738 T22: 0.2280 REMARK 3 T33: 0.2213 T12: 0.0071 REMARK 3 T13: 0.0616 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.8252 L22: 0.3941 REMARK 3 L33: 0.5988 L12: -0.3774 REMARK 3 L13: 0.0463 L23: 0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.1413 S12: 0.2054 S13: -0.1883 REMARK 3 S21: -0.1839 S22: -0.0716 S23: 0.0241 REMARK 3 S31: 0.1067 S32: 0.1961 S33: -0.0193 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:199) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9050 10.1826 28.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.1708 REMARK 3 T33: 0.2251 T12: -0.0250 REMARK 3 T13: 0.0232 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.5855 L22: 0.1584 REMARK 3 L33: 0.6635 L12: -0.3000 REMARK 3 L13: -0.0265 L23: 0.0791 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0205 S13: 0.1085 REMARK 3 S21: 0.1122 S22: 0.0112 S23: -0.0498 REMARK 3 S31: -0.2109 S32: 0.0720 S33: -0.0115 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 200:273) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0309 15.2840 36.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.2239 REMARK 3 T33: 0.2302 T12: -0.0228 REMARK 3 T13: 0.0309 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.1542 L22: 0.3250 REMARK 3 L33: 0.3468 L12: 0.1167 REMARK 3 L13: 0.1583 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: 0.0225 S13: -0.0341 REMARK 3 S21: -0.0701 S22: 0.0741 S23: -0.1939 REMARK 3 S31: -0.0030 S32: 0.2145 S33: 0.0286 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 26:104) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7184 29.7453 12.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.3582 REMARK 3 T33: 0.1834 T12: 0.1275 REMARK 3 T13: -0.1329 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 0.0921 L22: 0.6284 REMARK 3 L33: 0.5141 L12: 0.1763 REMARK 3 L13: -0.0687 L23: 0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.1570 S12: 0.2879 S13: 0.0325 REMARK 3 S21: -0.4720 S22: -0.1080 S23: 0.2984 REMARK 3 S31: -0.0479 S32: -0.2230 S33: 0.0427 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 105:199) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7837 20.9987 19.9096 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.1080 REMARK 3 T33: 0.1234 T12: -0.0108 REMARK 3 T13: -0.0025 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.4414 L22: 0.2775 REMARK 3 L33: 0.4053 L12: -0.3333 REMARK 3 L13: 0.0894 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: 0.1348 S13: -0.0521 REMARK 3 S21: -0.1450 S22: 0.0195 S23: 0.1709 REMARK 3 S31: -0.0202 S32: -0.0688 S33: 0.0034 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 200:273) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8140 18.8463 29.9624 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1900 REMARK 3 T33: 0.2076 T12: 0.0057 REMARK 3 T13: -0.0506 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.6083 L22: 0.1789 REMARK 3 L33: 0.9437 L12: -0.3284 REMARK 3 L13: -0.0515 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.0988 S13: -0.0633 REMARK 3 S21: -0.1624 S22: -0.0388 S23: 0.1321 REMARK 3 S31: -0.0068 S32: -0.1944 S33: -0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 81.685 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3O03 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.8, 150 MM REMARK 280 NACL, 10% GLYCEROL, 5 MM DTT, 5 MM MGCL2; RESERVOIR (100 MM REMARK 280 NAACETATE PH 4.6, 2 M NAFORMATE); CRYOPROTECTION (RESERVOIR + 20% REMARK 280 GLYCEROL), SITTING DROP VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.09100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.73500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.13650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.73500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.04550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.13650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.04550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.09100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS AN TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.18200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.18200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 321 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -70.07 -50.12 REMARK 500 ALA A 98 140.35 -178.06 REMARK 500 ALA A 142 -138.28 -91.25 REMARK 500 VAL A 153 42.50 -141.49 REMARK 500 ASP A 245 14.49 -143.53 REMARK 500 ALA B 98 143.13 -172.84 REMARK 500 ALA B 142 -137.70 -95.11 REMARK 500 ASP B 245 14.16 -140.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 274 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502044 RELATED DB: TARGETTRACK DBREF 3UF0 A 1 251 UNP C5BY10 C5BY10_BEUC1 1 251 DBREF 3UF0 B 1 251 UNP C5BY10 C5BY10_BEUC1 1 251 SEQADV 3UF0 MET A -21 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -20 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -19 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -18 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -17 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -16 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS A -15 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A -14 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A -13 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY A -12 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 VAL A -11 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASP A -10 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU A -9 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY A -8 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 THR A -7 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLU A -6 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASN A -5 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU A -4 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 TYR A -3 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 PHE A -2 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLN A -1 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER A 0 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 MET B -21 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -20 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -19 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -18 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -17 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -16 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 HIS B -15 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B -14 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B -13 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY B -12 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 VAL B -11 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASP B -10 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU B -9 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLY B -8 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 THR B -7 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLU B -6 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 ASN B -5 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 LEU B -4 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 TYR B -3 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 PHE B -2 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 GLN B -1 UNP C5BY10 EXPRESSION TAG SEQADV 3UF0 SER B 0 UNP C5BY10 EXPRESSION TAG SEQRES 1 A 273 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 273 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLY PRO SEQRES 3 A 273 PHE SER LEU ALA GLY ARG THR ALA VAL VAL THR GLY ALA SEQRES 4 A 273 GLY SER GLY ILE GLY ARG ALA ILE ALA HIS GLY TYR ALA SEQRES 5 A 273 ARG ALA GLY ALA HIS VAL LEU ALA TRP GLY ARG THR ASP SEQRES 6 A 273 GLY VAL LYS GLU VAL ALA ASP GLU ILE ALA ASP GLY GLY SEQRES 7 A 273 GLY SER ALA GLU ALA VAL VAL ALA ASP LEU ALA ASP LEU SEQRES 8 A 273 GLU GLY ALA ALA ASN VAL ALA GLU GLU LEU ALA ALA THR SEQRES 9 A 273 ARG ARG VAL ASP VAL LEU VAL ASN ASN ALA GLY ILE ILE SEQRES 10 A 273 ALA ARG ALA PRO ALA GLU GLU VAL SER LEU GLY ARG TRP SEQRES 11 A 273 ARG GLU VAL LEU THR VAL ASN LEU ASP ALA ALA TRP VAL SEQRES 12 A 273 LEU SER ARG SER PHE GLY THR ALA MET LEU ALA HIS GLY SEQRES 13 A 273 SER GLY ARG ILE VAL THR ILE ALA SER MET LEU SER PHE SEQRES 14 A 273 GLN GLY GLY ARG ASN VAL ALA ALA TYR ALA ALA SER LYS SEQRES 15 A 273 HIS ALA VAL VAL GLY LEU THR ARG ALA LEU ALA SER GLU SEQRES 16 A 273 TRP ALA GLY ARG GLY VAL GLY VAL ASN ALA LEU ALA PRO SEQRES 17 A 273 GLY TYR VAL VAL THR ALA ASN THR ALA ALA LEU ARG ALA SEQRES 18 A 273 ASP ASP GLU ARG ALA ALA GLU ILE THR ALA ARG ILE PRO SEQRES 19 A 273 ALA GLY ARG TRP ALA THR PRO GLU ASP MET VAL GLY PRO SEQRES 20 A 273 ALA VAL PHE LEU ALA SER ASP ALA ALA SER TYR VAL HIS SEQRES 21 A 273 GLY GLN VAL LEU ALA VAL ASP GLY GLY TRP LEU ALA SER SEQRES 1 B 273 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 273 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR GLY PRO SEQRES 3 B 273 PHE SER LEU ALA GLY ARG THR ALA VAL VAL THR GLY ALA SEQRES 4 B 273 GLY SER GLY ILE GLY ARG ALA ILE ALA HIS GLY TYR ALA SEQRES 5 B 273 ARG ALA GLY ALA HIS VAL LEU ALA TRP GLY ARG THR ASP SEQRES 6 B 273 GLY VAL LYS GLU VAL ALA ASP GLU ILE ALA ASP GLY GLY SEQRES 7 B 273 GLY SER ALA GLU ALA VAL VAL ALA ASP LEU ALA ASP LEU SEQRES 8 B 273 GLU GLY ALA ALA ASN VAL ALA GLU GLU LEU ALA ALA THR SEQRES 9 B 273 ARG ARG VAL ASP VAL LEU VAL ASN ASN ALA GLY ILE ILE SEQRES 10 B 273 ALA ARG ALA PRO ALA GLU GLU VAL SER LEU GLY ARG TRP SEQRES 11 B 273 ARG GLU VAL LEU THR VAL ASN LEU ASP ALA ALA TRP VAL SEQRES 12 B 273 LEU SER ARG SER PHE GLY THR ALA MET LEU ALA HIS GLY SEQRES 13 B 273 SER GLY ARG ILE VAL THR ILE ALA SER MET LEU SER PHE SEQRES 14 B 273 GLN GLY GLY ARG ASN VAL ALA ALA TYR ALA ALA SER LYS SEQRES 15 B 273 HIS ALA VAL VAL GLY LEU THR ARG ALA LEU ALA SER GLU SEQRES 16 B 273 TRP ALA GLY ARG GLY VAL GLY VAL ASN ALA LEU ALA PRO SEQRES 17 B 273 GLY TYR VAL VAL THR ALA ASN THR ALA ALA LEU ARG ALA SEQRES 18 B 273 ASP ASP GLU ARG ALA ALA GLU ILE THR ALA ARG ILE PRO SEQRES 19 B 273 ALA GLY ARG TRP ALA THR PRO GLU ASP MET VAL GLY PRO SEQRES 20 B 273 ALA VAL PHE LEU ALA SER ASP ALA ALA SER TYR VAL HIS SEQRES 21 B 273 GLY GLN VAL LEU ALA VAL ASP GLY GLY TRP LEU ALA SER HET NAP A 274 48 HET NAP B 274 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *182(H2 O) HELIX 1 1 SER A 19 ALA A 32 1 14 HELIX 2 2 ASP A 43 ASP A 54 1 12 HELIX 3 3 ASP A 68 ARG A 83 1 16 HELIX 4 4 PRO A 99 VAL A 103 5 5 HELIX 5 5 SER A 104 LEU A 116 1 13 HELIX 6 6 LEU A 116 GLY A 134 1 19 HELIX 7 7 SER A 143 PHE A 147 5 5 HELIX 8 8 VAL A 153 ALA A 175 1 23 HELIX 9 9 THR A 191 ASN A 193 5 3 HELIX 10 10 THR A 194 ALA A 199 1 6 HELIX 11 11 ASP A 200 ILE A 211 1 12 HELIX 12 12 THR A 218 ASP A 221 5 4 HELIX 13 13 MET A 222 SER A 231 1 10 HELIX 14 14 ASP A 232 SER A 235 5 4 HELIX 15 15 GLY A 247 SER A 251 5 5 HELIX 16 16 SER B 19 ALA B 32 1 14 HELIX 17 17 ASP B 43 GLY B 55 1 13 HELIX 18 18 ASP B 68 ARG B 83 1 16 HELIX 19 19 PRO B 99 VAL B 103 5 5 HELIX 20 20 SER B 104 LEU B 116 1 13 HELIX 21 21 LEU B 116 GLY B 134 1 19 HELIX 22 22 SER B 143 PHE B 147 5 5 HELIX 23 23 VAL B 153 ALA B 175 1 23 HELIX 24 24 THR B 191 ASN B 193 5 3 HELIX 25 25 THR B 194 ASP B 200 1 7 HELIX 26 26 ASP B 200 ILE B 211 1 12 HELIX 27 27 THR B 218 ASP B 221 5 4 HELIX 28 28 MET B 222 SER B 231 1 10 HELIX 29 29 ASP B 232 SER B 235 5 4 HELIX 30 30 GLY B 247 SER B 251 5 5 SHEET 1 A 7 SER A 58 VAL A 63 0 SHEET 2 A 7 HIS A 35 GLY A 40 1 N ALA A 38 O GLU A 60 SHEET 3 A 7 THR A 11 THR A 15 1 N ALA A 12 O LEU A 37 SHEET 4 A 7 VAL A 87 ASN A 90 1 O VAL A 89 N VAL A 13 SHEET 5 A 7 GLY A 136 ILE A 141 1 O VAL A 139 N LEU A 88 SHEET 6 A 7 VAL A 179 PRO A 186 1 O ASN A 182 N ILE A 138 SHEET 7 A 7 VAL A 241 VAL A 244 1 O LEU A 242 N ALA A 183 SHEET 1 B 7 SER B 58 VAL B 63 0 SHEET 2 B 7 HIS B 35 GLY B 40 1 N ALA B 38 O VAL B 62 SHEET 3 B 7 THR B 11 THR B 15 1 N ALA B 12 O LEU B 37 SHEET 4 B 7 VAL B 87 ASN B 90 1 O VAL B 87 N VAL B 13 SHEET 5 B 7 GLY B 136 ILE B 141 1 O VAL B 139 N LEU B 88 SHEET 6 B 7 VAL B 179 PRO B 186 1 O ASN B 182 N ILE B 138 SHEET 7 B 7 VAL B 241 VAL B 244 1 O VAL B 244 N ALA B 185 SITE 1 AC1 30 GLY A 16 SER A 19 GLY A 20 ILE A 21 SITE 2 AC1 30 ARG A 41 THR A 42 ASP A 65 LEU A 66 SITE 3 AC1 30 ALA A 67 ASN A 91 ALA A 92 GLY A 93 SITE 4 AC1 30 ILE A 94 ILE A 141 ALA A 142 SER A 143 SITE 5 AC1 30 TYR A 156 LYS A 160 PRO A 186 GLY A 187 SITE 6 AC1 30 TYR A 188 VAL A 189 THR A 191 ASN A 193 SITE 7 AC1 30 THR A 194 HOH A 292 HOH A 319 HOH A 321 SITE 8 AC1 30 HOH A 366 HOH A 367 SITE 1 AC2 27 GLY B 16 SER B 19 GLY B 20 ILE B 21 SITE 2 AC2 27 ARG B 41 ASP B 65 LEU B 66 ALA B 67 SITE 3 AC2 27 ASN B 91 ALA B 92 GLY B 93 ILE B 94 SITE 4 AC2 27 ILE B 141 ALA B 142 SER B 143 TYR B 156 SITE 5 AC2 27 LYS B 160 PRO B 186 GLY B 187 VAL B 189 SITE 6 AC2 27 THR B 191 ALA B 192 ASN B 193 THR B 194 SITE 7 AC2 27 HOH B 285 HOH B 331 HOH B 359 CRYST1 115.470 115.470 76.182 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013126 0.00000