HEADER MEMBRANE PROTEIN/TRANSPORT PROTEIN 11-NOV-11 3UM1 TITLE CRYSTAL STRUCTURE OF THE BROX BRO1 DOMAIN IN COMPLEX WITH THE C- TITLE 2 TERMINAL TAIL OF CHMP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRO1 DOMAIN-CONTAINING PROTEIN BROX; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: BROX BRO1 DOMAIN 2-377; COMPND 5 SYNONYM: BRO1 DOMAIN- AND CAAX MOTIF-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHARGED MULTIVESICULAR BODY PROTEIN 5; COMPND 9 CHAIN: B, E; COMPND 10 FRAGMENT: C-TERMINAL TAIL OF CHMP5 151-219; COMPND 11 SYNONYM: CHROMATIN-MODIFYING PROTEIN 5, SNF7 DOMAIN-CONTAINING COMPND 12 PROTEIN 2, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 60, VPS60, COMPND 13 HVPS60; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BROFTI, BROX, C1ORF58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: C9ORF83, CGI-34, CHMP5, HSPC177, PNAS-114, PNAS-2, SNF7DC2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS BETA HAIRPIN, ESCRT-III, CHMPS, MEMBRANE PROTEIN-TRANSPORT PROTEIN KEYWDS 2 COMPLEX, BROX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.JIANG,R.L.MU,T.XIAO REVDAT 3 13-SEP-23 3UM1 1 REMARK REVDAT 2 23-MAY-12 3UM1 1 JRNL REVDAT 1 18-APR-12 3UM1 0 JRNL AUTH R.MU,V.DUSSUPT,J.JIANG,P.SETTE,V.RUDD,W.CHUENCHOR,N.F.BELLO, JRNL AUTH 2 F.BOUAMR,T.S.XIAO JRNL TITL TWO DISTINCT BINDING MODES DEFINE THE INTERACTION OF BROX JRNL TITL 2 WITH THE C-TERMINAL TAILS OF CHMP5 AND CHMP4B. JRNL REF STRUCTURE V. 20 887 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22484091 JRNL DOI 10.1016/J.STR.2012.03.001 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 21584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3241 - 5.4131 0.85 2668 150 0.1975 0.2263 REMARK 3 2 5.4131 - 4.2978 0.89 2676 130 0.1566 0.1951 REMARK 3 3 4.2978 - 3.7549 0.89 2649 143 0.1513 0.2206 REMARK 3 4 3.7549 - 3.4117 0.89 2621 140 0.1749 0.2943 REMARK 3 5 3.4117 - 3.1672 0.88 2583 132 0.1970 0.2630 REMARK 3 6 3.1672 - 2.9806 0.86 2511 129 0.2221 0.3325 REMARK 3 7 2.9806 - 2.8313 0.84 2477 125 0.2301 0.2942 REMARK 3 8 2.8313 - 2.7081 0.80 2326 124 0.2455 0.3089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 32.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96830 REMARK 3 B22 (A**2) : -2.20010 REMARK 3 B33 (A**2) : 3.16850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6397 REMARK 3 ANGLE : 0.895 8659 REMARK 3 CHIRALITY : 0.070 944 REMARK 3 PLANARITY : 0.004 1110 REMARK 3 DIHEDRAL : 14.714 2362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000068922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3R9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M MAGNESIUM ACETATE , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.13500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.13500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 68.92000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 377 REMARK 465 ARG B 151 REMARK 465 SER B 152 REMARK 465 TYR B 153 REMARK 465 GLY B 154 REMARK 465 THR B 155 REMARK 465 PRO B 156 REMARK 465 GLU B 157 REMARK 465 LEU B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 160 REMARK 465 ASP B 161 REMARK 465 ASP B 162 REMARK 465 LEU B 163 REMARK 465 GLU B 164 REMARK 465 ALA B 165 REMARK 465 GLU B 166 REMARK 465 LEU B 167 REMARK 465 ASP B 168 REMARK 465 ALA B 169 REMARK 465 LEU B 170 REMARK 465 GLY B 171 REMARK 465 ASP B 172 REMARK 465 GLU B 173 REMARK 465 LEU B 174 REMARK 465 LEU B 175 REMARK 465 ALA B 176 REMARK 465 ASP B 177 REMARK 465 GLU B 178 REMARK 465 ASP B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 TYR B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 184 REMARK 465 GLU B 185 REMARK 465 ALA B 186 REMARK 465 ALA B 187 REMARK 465 SER B 188 REMARK 465 ALA B 189 REMARK 465 PRO B 190 REMARK 465 ALA B 191 REMARK 465 ILE B 192 REMARK 465 PRO B 193 REMARK 465 GLU B 194 REMARK 465 GLY B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 THR B 198 REMARK 465 ASP B 199 REMARK 465 PRO B 217 REMARK 465 ALA B 218 REMARK 465 SER B 219 REMARK 465 LYS D 377 REMARK 465 ARG E 151 REMARK 465 SER E 152 REMARK 465 TYR E 153 REMARK 465 GLY E 154 REMARK 465 THR E 155 REMARK 465 PRO E 156 REMARK 465 GLU E 157 REMARK 465 LEU E 158 REMARK 465 ASP E 159 REMARK 465 GLU E 160 REMARK 465 ASP E 161 REMARK 465 ASP E 162 REMARK 465 LEU E 163 REMARK 465 GLU E 164 REMARK 465 ALA E 165 REMARK 465 GLU E 166 REMARK 465 LEU E 167 REMARK 465 ASP E 168 REMARK 465 ALA E 169 REMARK 465 LEU E 170 REMARK 465 GLY E 171 REMARK 465 ASP E 172 REMARK 465 GLU E 173 REMARK 465 LEU E 174 REMARK 465 LEU E 175 REMARK 465 ALA E 176 REMARK 465 ASP E 177 REMARK 465 GLU E 178 REMARK 465 ASP E 179 REMARK 465 SER E 180 REMARK 465 SER E 181 REMARK 465 TYR E 182 REMARK 465 LEU E 183 REMARK 465 ASP E 184 REMARK 465 GLU E 185 REMARK 465 ALA E 186 REMARK 465 ALA E 187 REMARK 465 SER E 188 REMARK 465 ALA E 189 REMARK 465 PRO E 190 REMARK 465 ALA E 191 REMARK 465 ILE E 192 REMARK 465 PRO E 193 REMARK 465 GLU E 194 REMARK 465 GLY E 195 REMARK 465 VAL E 196 REMARK 465 PRO E 197 REMARK 465 THR E 198 REMARK 465 ASP E 199 REMARK 465 PRO E 217 REMARK 465 ALA E 218 REMARK 465 SER E 219 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER A 304 REMARK 475 GLY A 305 REMARK 475 SER D 304 REMARK 475 GLY D 305 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 76 CG OD1 OD2 REMARK 480 GLU A 77 CG CD OE1 OE2 REMARK 480 SER A 78 CB OG REMARK 480 ARG A 145 CZ REMARK 480 GLU A 269 CD OE1 OE2 REMARK 480 LYS A 289 CD CE NZ REMARK 480 LYS A 295 CD CE NZ REMARK 480 LYS A 302 CB CG CD CE NZ REMARK 480 HIS A 306 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 345 CB CG CD CE NZ REMARK 480 ILE B 216 CG1 CD1 REMARK 480 TRP D 4 CD2 REMARK 480 GLU D 55 CD OE1 OE2 REMARK 480 GLU D 77 CG CD OE1 OE2 REMARK 480 SER D 78 CB OG REMARK 480 ARG D 128 CD NE CZ NH1 NH2 REMARK 480 GLU D 201 OE1 REMARK 480 GLU D 269 CG CD OE1 REMARK 480 LYS D 302 CB CG CD CE NZ REMARK 480 HIS D 306 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS D 345 CG CD CE NZ REMARK 480 ILE E 216 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 -118.68 56.00 REMARK 500 HIS A 161 -56.35 -123.56 REMARK 500 SER A 304 -142.17 47.01 REMARK 500 ARG A 325 -117.65 37.04 REMARK 500 ASN A 327 -61.01 -126.73 REMARK 500 ILE A 330 -57.53 -124.52 REMARK 500 PRO A 360 -179.94 -63.74 REMARK 500 ASP A 374 75.20 48.29 REMARK 500 TYR D 21 -121.97 50.46 REMARK 500 GLU D 77 -135.62 65.83 REMARK 500 SER D 78 -9.73 63.85 REMARK 500 GLN D 80 -71.65 -84.60 REMARK 500 ILE D 135 81.23 57.46 REMARK 500 HIS D 161 -57.78 -127.74 REMARK 500 SER D 304 -142.00 46.85 REMARK 500 ARG D 325 -3.73 81.03 REMARK 500 GLU D 326 -58.54 -124.12 REMARK 500 PHE D 329 -76.41 -87.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 324 ARG A 325 137.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R9M RELATED DB: PDB REMARK 900 RELATED ID: 3ULY RELATED DB: PDB REMARK 900 RELATED ID: 3UM0 RELATED DB: PDB REMARK 900 RELATED ID: 3UM2 RELATED DB: PDB REMARK 900 RELATED ID: 3UM3 RELATED DB: PDB DBREF 3UM1 A 2 377 UNP Q5VW32 BROX_HUMAN 2 377 DBREF 3UM1 B 151 219 UNP Q9NZZ3 CHMP5_HUMAN 151 219 DBREF 3UM1 D 2 377 UNP Q5VW32 BROX_HUMAN 2 377 DBREF 3UM1 E 151 219 UNP Q9NZZ3 CHMP5_HUMAN 151 219 SEQRES 1 A 376 THR HIS TRP PHE HIS ARG ASN PRO LEU LYS ALA THR ALA SEQRES 2 A 376 PRO VAL SER PHE ASN TYR TYR GLY VAL VAL THR GLY PRO SEQRES 3 A 376 SER ALA SER LYS ILE CYS ASN ASP LEU ARG SER SER ARG SEQRES 4 A 376 ALA ARG LEU LEU GLU LEU PHE THR ASP LEU SER CYS ASN SEQRES 5 A 376 PRO GLU MET MET LYS ASN ALA ALA ASP SER TYR PHE SER SEQRES 6 A 376 LEU LEU GLN GLY PHE ILE ASN SER LEU ASP GLU SER THR SEQRES 7 A 376 GLN GLU SER LYS LEU ARG TYR ILE GLN ASN PHE LYS TRP SEQRES 8 A 376 THR ASP THR LEU GLN GLY GLN VAL PRO SER ALA GLN GLN SEQRES 9 A 376 ASP ALA VAL PHE GLU LEU ILE SER MET GLY PHE ASN VAL SEQRES 10 A 376 ALA LEU TRP TYR THR LYS TYR ALA SER ARG LEU ALA GLY SEQRES 11 A 376 LYS GLU ASN ILE THR GLU ASP GLU ALA LYS GLU VAL HIS SEQRES 12 A 376 ARG SER LEU LYS ILE ALA ALA GLY ILE PHE LYS HIS LEU SEQRES 13 A 376 LYS GLU SER HIS LEU PRO LYS LEU ILE THR PRO ALA GLU SEQRES 14 A 376 LYS GLY ARG ASP LEU GLU SER ARG LEU ILE GLU ALA TYR SEQRES 15 A 376 VAL ILE GLN CYS GLN ALA GLU ALA GLN GLU VAL THR ILE SEQRES 16 A 376 ALA ARG ALA ILE GLU LEU LYS HIS ALA PRO GLY LEU ILE SEQRES 17 A 376 ALA ALA LEU ALA TYR GLU THR ALA ASN PHE TYR GLN LYS SEQRES 18 A 376 ALA ASP HIS THR LEU SER SER LEU GLU PRO ALA TYR SER SEQRES 19 A 376 ALA LYS TRP ARG LYS TYR LEU HIS LEU LYS MET CYS PHE SEQRES 20 A 376 TYR THR ALA TYR ALA TYR CYS TYR HIS GLY GLU THR LEU SEQRES 21 A 376 LEU ALA SER ASP LYS CYS GLY GLU ALA ILE ARG SER LEU SEQRES 22 A 376 GLN GLU ALA GLU LYS LEU TYR ALA LYS ALA GLU ALA LEU SEQRES 23 A 376 CYS LYS GLU TYR GLY GLU THR LYS GLY PRO GLY PRO THR SEQRES 24 A 376 VAL LYS PRO SER GLY HIS LEU PHE PHE ARG LYS LEU GLY SEQRES 25 A 376 ASN LEU VAL LYS ASN THR LEU GLU LYS CYS GLN ARG GLU SEQRES 26 A 376 ASN GLY PHE ILE TYR PHE GLN LYS ILE PRO THR GLU ALA SEQRES 27 A 376 PRO GLN LEU GLU LEU LYS ALA ASN TYR GLY LEU VAL GLU SEQRES 28 A 376 PRO ILE PRO PHE GLU PHE PRO PRO THR SER VAL GLN TRP SEQRES 29 A 376 THR PRO GLU THR LEU ALA ALA PHE ASP LEU THR LYS SEQRES 1 B 69 ARG SER TYR GLY THR PRO GLU LEU ASP GLU ASP ASP LEU SEQRES 2 B 69 GLU ALA GLU LEU ASP ALA LEU GLY ASP GLU LEU LEU ALA SEQRES 3 B 69 ASP GLU ASP SER SER TYR LEU ASP GLU ALA ALA SER ALA SEQRES 4 B 69 PRO ALA ILE PRO GLU GLY VAL PRO THR ASP THR LYS ASN SEQRES 5 B 69 LYS ASP GLY VAL LEU VAL ASP GLU PHE GLY LEU PRO GLN SEQRES 6 B 69 ILE PRO ALA SER SEQRES 1 D 376 THR HIS TRP PHE HIS ARG ASN PRO LEU LYS ALA THR ALA SEQRES 2 D 376 PRO VAL SER PHE ASN TYR TYR GLY VAL VAL THR GLY PRO SEQRES 3 D 376 SER ALA SER LYS ILE CYS ASN ASP LEU ARG SER SER ARG SEQRES 4 D 376 ALA ARG LEU LEU GLU LEU PHE THR ASP LEU SER CYS ASN SEQRES 5 D 376 PRO GLU MET MET LYS ASN ALA ALA ASP SER TYR PHE SER SEQRES 6 D 376 LEU LEU GLN GLY PHE ILE ASN SER LEU ASP GLU SER THR SEQRES 7 D 376 GLN GLU SER LYS LEU ARG TYR ILE GLN ASN PHE LYS TRP SEQRES 8 D 376 THR ASP THR LEU GLN GLY GLN VAL PRO SER ALA GLN GLN SEQRES 9 D 376 ASP ALA VAL PHE GLU LEU ILE SER MET GLY PHE ASN VAL SEQRES 10 D 376 ALA LEU TRP TYR THR LYS TYR ALA SER ARG LEU ALA GLY SEQRES 11 D 376 LYS GLU ASN ILE THR GLU ASP GLU ALA LYS GLU VAL HIS SEQRES 12 D 376 ARG SER LEU LYS ILE ALA ALA GLY ILE PHE LYS HIS LEU SEQRES 13 D 376 LYS GLU SER HIS LEU PRO LYS LEU ILE THR PRO ALA GLU SEQRES 14 D 376 LYS GLY ARG ASP LEU GLU SER ARG LEU ILE GLU ALA TYR SEQRES 15 D 376 VAL ILE GLN CYS GLN ALA GLU ALA GLN GLU VAL THR ILE SEQRES 16 D 376 ALA ARG ALA ILE GLU LEU LYS HIS ALA PRO GLY LEU ILE SEQRES 17 D 376 ALA ALA LEU ALA TYR GLU THR ALA ASN PHE TYR GLN LYS SEQRES 18 D 376 ALA ASP HIS THR LEU SER SER LEU GLU PRO ALA TYR SER SEQRES 19 D 376 ALA LYS TRP ARG LYS TYR LEU HIS LEU LYS MET CYS PHE SEQRES 20 D 376 TYR THR ALA TYR ALA TYR CYS TYR HIS GLY GLU THR LEU SEQRES 21 D 376 LEU ALA SER ASP LYS CYS GLY GLU ALA ILE ARG SER LEU SEQRES 22 D 376 GLN GLU ALA GLU LYS LEU TYR ALA LYS ALA GLU ALA LEU SEQRES 23 D 376 CYS LYS GLU TYR GLY GLU THR LYS GLY PRO GLY PRO THR SEQRES 24 D 376 VAL LYS PRO SER GLY HIS LEU PHE PHE ARG LYS LEU GLY SEQRES 25 D 376 ASN LEU VAL LYS ASN THR LEU GLU LYS CYS GLN ARG GLU SEQRES 26 D 376 ASN GLY PHE ILE TYR PHE GLN LYS ILE PRO THR GLU ALA SEQRES 27 D 376 PRO GLN LEU GLU LEU LYS ALA ASN TYR GLY LEU VAL GLU SEQRES 28 D 376 PRO ILE PRO PHE GLU PHE PRO PRO THR SER VAL GLN TRP SEQRES 29 D 376 THR PRO GLU THR LEU ALA ALA PHE ASP LEU THR LYS SEQRES 1 E 69 ARG SER TYR GLY THR PRO GLU LEU ASP GLU ASP ASP LEU SEQRES 2 E 69 GLU ALA GLU LEU ASP ALA LEU GLY ASP GLU LEU LEU ALA SEQRES 3 E 69 ASP GLU ASP SER SER TYR LEU ASP GLU ALA ALA SER ALA SEQRES 4 E 69 PRO ALA ILE PRO GLU GLY VAL PRO THR ASP THR LYS ASN SEQRES 5 E 69 LYS ASP GLY VAL LEU VAL ASP GLU PHE GLY LEU PRO GLN SEQRES 6 E 69 ILE PRO ALA SER HET GOL A 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *157(H2 O) HELIX 1 1 THR A 25 PHE A 47 1 23 HELIX 2 2 ASN A 53 GLN A 69 1 17 HELIX 3 3 GLY A 70 ILE A 72 5 3 HELIX 4 4 ASP A 106 GLY A 131 1 26 HELIX 5 5 THR A 136 HIS A 161 1 26 HELIX 6 6 LEU A 162 LEU A 165 5 4 HELIX 7 7 GLU A 176 LEU A 202 1 27 HELIX 8 8 ALA A 205 SER A 228 1 24 HELIX 9 9 GLU A 231 SER A 264 1 34 HELIX 10 10 LYS A 266 GLU A 293 1 28 HELIX 11 11 LEU A 307 GLN A 324 1 18 HELIX 12 12 THR A 366 ALA A 372 1 7 HELIX 13 13 TYR D 20 VAL D 24 5 5 HELIX 14 14 GLY D 26 THR D 48 1 23 HELIX 15 15 ASN D 53 GLN D 69 1 17 HELIX 16 16 GLY D 70 ILE D 72 5 3 HELIX 17 17 ASP D 106 GLY D 131 1 26 HELIX 18 18 THR D 136 HIS D 161 1 26 HELIX 19 19 LEU D 162 LEU D 165 5 4 HELIX 20 20 GLU D 176 LEU D 202 1 27 HELIX 21 21 ALA D 205 LEU D 227 1 23 HELIX 22 22 SER D 228 LEU D 230 5 3 HELIX 23 23 GLU D 231 SER D 264 1 34 HELIX 24 24 LYS D 266 GLU D 293 1 28 HELIX 25 25 LEU D 307 GLN D 324 1 18 HELIX 26 26 THR D 366 ALA D 372 1 7 SHEET 1 A 2 PHE A 90 TRP A 92 0 SHEET 2 A 2 SER A 102 GLN A 104 -1 O SER A 102 N TRP A 92 SHEET 1 B 2 PHE D 90 TRP D 92 0 SHEET 2 B 2 SER D 102 GLN D 104 -1 O GLN D 104 N PHE D 90 SSBOND 1 CYS A 267 CYS A 323 1555 1555 2.04 SSBOND 2 CYS D 267 CYS D 323 1555 1555 2.04 CISPEP 1 GLY A 328 PHE A 329 0 4.68 CISPEP 2 GLN A 333 LYS A 334 0 2.56 SITE 1 AC1 7 GLN A 104 GLN A 105 ILE A 166 ARG A 272 SITE 2 AC1 7 GLU A 276 ALA A 339 HOH A 425 CRYST1 68.920 111.390 116.270 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008601 0.00000