HEADER HYDROLASE 12-NOV-11 3UM9 TITLE CRYSTAL STRUCTURE OF THE DEFLUORINATING L-2-HALOACID DEHALOGENASE TITLE 2 BPRO0530 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE, TYPE II; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-2-HALOACID DEHALOGENASE BPRO0530; COMPND 5 EC: 3.8.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLAROMONAS SP. JS666; SOURCE 3 ORGANISM_TAXID: 296591; SOURCE 4 STRAIN: JS666 / ATCC BAA-500; SOURCE 5 GENE: BPRO0530, BPRO_0530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV-L KEYWDS HALOACID DEHALOGENASE-LIKE HYDROLASE PROTEIN SUPERFAMILY, KEYWDS 2 DEFLUORINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.Y.CHAN,A.SAVCHENKO,A.F.YAKUNIN,E.A.EDWARDS,E.F.PAI REVDAT 2 28-FEB-24 3UM9 1 REMARK SEQADV LINK REVDAT 1 14-NOV-12 3UM9 0 JRNL AUTH P.W.Y.CHAN,T.K.W.TO,P.PETIT,C.TRAN,M.WAELTI,A.SAVCHENKO, JRNL AUTH 2 A.F.YAKUNIN,E.A.EDWARDS,E.F.PAI JRNL TITL STRUCTURAL ADAPTATIONS OF L-2-HALOACID DEHALOGENASES THAT JRNL TITL 2 ENABLE HYDROLYTIC DEFLUORINATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1638 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 2.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3634 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2405 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4937 ; 1.880 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5841 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 7.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.675 ;23.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;17.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.743 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4087 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 0.915 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 926 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3609 ; 1.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 2.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1328 ; 3.873 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 229 6 REMARK 3 1 B 0 B 229 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2938 ; 0.450 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2938 ; 4.690 ;10.000 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.559 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H+K,-K,-L REMARK 3 TWIN FRACTION : 0.441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3UM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 19.047 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LITHIUM SULFATE, 0.1 M TRIS-HCL, REMARK 280 PH 8.5, CRYOPROTECTANT: PARATONE N, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.67667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.01500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.33833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.69167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 225 REMARK 465 ASP A 226 REMARK 465 GLU A 227 REMARK 465 ALA A 228 REMARK 465 ALA A 229 REMARK 465 VAL B 225 REMARK 465 ASP B 226 REMARK 465 GLU B 227 REMARK 465 ALA B 228 REMARK 465 ALA B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 75 OG SER B 223 2444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 25 CB CYS B 25 SG -0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -23.52 169.91 REMARK 500 LEU A 11 -62.30 -95.90 REMARK 500 PRO A 152 40.22 -101.63 REMARK 500 MET B 1 28.03 -141.26 REMARK 500 LEU B 11 -61.44 -108.08 REMARK 500 ALA B 109 -12.15 -46.57 REMARK 500 PRO B 152 43.93 -104.01 REMARK 500 ASN B 195 79.79 -103.16 REMARK 500 ASN B 198 34.85 90.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 230 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 0 N REMARK 620 2 MET A 1 N 87.6 REMARK 620 3 HIS A 2 ND1 95.3 174.2 REMARK 620 4 HIS A 2 N 164.6 78.5 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 230 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 0 N REMARK 620 2 MET B 1 N 77.9 REMARK 620 3 HIS B 2 ND1 101.9 162.9 REMARK 620 4 HIS B 2 N 153.4 75.5 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UMB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE L-2-HALOACID DEHALOGENASE RSC1362 REMARK 900 RELATED ID: 3UMC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE L-2-HALOACID DEHALOGENASE PA0810 REMARK 900 RELATED ID: 3UMG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DEFLUORINATING L-2-HALOACID DEHALOGENASE REMARK 900 RHA0230 DBREF 3UM9 A 1 229 UNP Q12G50 Q12G50_POLSJ 1 229 DBREF 3UM9 B 1 229 UNP Q12G50 Q12G50_POLSJ 1 229 SEQADV 3UM9 GLY A 0 UNP Q12G50 EXPRESSION TAG SEQADV 3UM9 GLY B 0 UNP Q12G50 EXPRESSION TAG SEQRES 1 A 230 GLY MET HIS ALA ILE LYS ALA VAL VAL PHE ASP LEU TYR SEQRES 2 A 230 GLY THR LEU TYR ASP VAL TYR SER VAL ARG THR SER CYS SEQRES 3 A 230 GLU ARG ILE PHE PRO GLY GLN GLY GLU MET VAL SER LYS SEQRES 4 A 230 MET TRP ARG GLN LYS GLN LEU GLU TYR THR TRP MET ARG SEQRES 5 A 230 THR LEU MET GLY GLN TYR GLN ASP PHE GLU SER ALA THR SEQRES 6 A 230 LEU ASP ALA LEU ARG TYR THR CYS GLY SER LEU GLY LEU SEQRES 7 A 230 ALA LEU ASP ALA ASP GLY GLU ALA HIS LEU CYS SER GLU SEQRES 8 A 230 TYR LEU SER LEU THR PRO PHE ALA ASP VAL PRO GLN ALA SEQRES 9 A 230 LEU GLN GLN LEU ARG ALA ALA GLY LEU LYS THR ALA ILE SEQRES 10 A 230 LEU SER ASN GLY SER ARG HIS SER ILE ARG GLN VAL VAL SEQRES 11 A 230 GLY ASN SER GLY LEU THR ASN SER PHE ASP HIS LEU ILE SEQRES 12 A 230 SER VAL ASP GLU VAL ARG LEU PHE LYS PRO HIS GLN LYS SEQRES 13 A 230 VAL TYR GLU LEU ALA MET ASP THR LEU HIS LEU GLY GLU SEQRES 14 A 230 SER GLU ILE LEU PHE VAL SER CYS ASN SER TRP ASP ALA SEQRES 15 A 230 THR GLY ALA LYS TYR PHE GLY TYR PRO VAL CYS TRP ILE SEQRES 16 A 230 ASN ARG SER ASN GLY VAL PHE ASP GLN LEU GLY VAL VAL SEQRES 17 A 230 PRO ASP ILE VAL VAL SER ASP VAL GLY VAL LEU ALA SER SEQRES 18 A 230 ARG PHE SER PRO VAL ASP GLU ALA ALA SEQRES 1 B 230 GLY MET HIS ALA ILE LYS ALA VAL VAL PHE ASP LEU TYR SEQRES 2 B 230 GLY THR LEU TYR ASP VAL TYR SER VAL ARG THR SER CYS SEQRES 3 B 230 GLU ARG ILE PHE PRO GLY GLN GLY GLU MET VAL SER LYS SEQRES 4 B 230 MET TRP ARG GLN LYS GLN LEU GLU TYR THR TRP MET ARG SEQRES 5 B 230 THR LEU MET GLY GLN TYR GLN ASP PHE GLU SER ALA THR SEQRES 6 B 230 LEU ASP ALA LEU ARG TYR THR CYS GLY SER LEU GLY LEU SEQRES 7 B 230 ALA LEU ASP ALA ASP GLY GLU ALA HIS LEU CYS SER GLU SEQRES 8 B 230 TYR LEU SER LEU THR PRO PHE ALA ASP VAL PRO GLN ALA SEQRES 9 B 230 LEU GLN GLN LEU ARG ALA ALA GLY LEU LYS THR ALA ILE SEQRES 10 B 230 LEU SER ASN GLY SER ARG HIS SER ILE ARG GLN VAL VAL SEQRES 11 B 230 GLY ASN SER GLY LEU THR ASN SER PHE ASP HIS LEU ILE SEQRES 12 B 230 SER VAL ASP GLU VAL ARG LEU PHE LYS PRO HIS GLN LYS SEQRES 13 B 230 VAL TYR GLU LEU ALA MET ASP THR LEU HIS LEU GLY GLU SEQRES 14 B 230 SER GLU ILE LEU PHE VAL SER CYS ASN SER TRP ASP ALA SEQRES 15 B 230 THR GLY ALA LYS TYR PHE GLY TYR PRO VAL CYS TRP ILE SEQRES 16 B 230 ASN ARG SER ASN GLY VAL PHE ASP GLN LEU GLY VAL VAL SEQRES 17 B 230 PRO ASP ILE VAL VAL SER ASP VAL GLY VAL LEU ALA SER SEQRES 18 B 230 ARG PHE SER PRO VAL ASP GLU ALA ALA HET NI A 230 1 HET SO4 A 231 5 HET NI B 230 1 HET SO4 B 231 5 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 3 NI 2(NI 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *104(H2 O) HELIX 1 1 ASP A 17 SER A 20 5 4 HELIX 2 2 VAL A 21 PHE A 29 1 9 HELIX 3 3 GLN A 32 GLY A 55 1 24 HELIX 4 4 ASP A 59 GLY A 76 1 18 HELIX 5 5 ASP A 80 TYR A 91 1 12 HELIX 6 6 ASP A 99 ALA A 110 1 12 HELIX 7 7 SER A 121 SER A 132 1 12 HELIX 8 8 GLY A 133 PHE A 138 5 6 HELIX 9 9 ASP A 145 VAL A 147 5 3 HELIX 10 10 HIS A 153 HIS A 165 1 13 HELIX 11 11 GLY A 167 SER A 169 5 3 HELIX 12 12 ASN A 177 GLY A 188 1 12 HELIX 13 13 ASP A 214 ARG A 221 1 8 HELIX 14 14 VAL B 21 PHE B 29 1 9 HELIX 15 15 GLN B 32 GLY B 55 1 24 HELIX 16 16 ASP B 59 GLY B 76 1 18 HELIX 17 17 ASP B 80 TYR B 91 1 12 HELIX 18 18 LEU B 92 LEU B 94 5 3 HELIX 19 19 ASP B 99 ALA B 109 1 11 HELIX 20 20 SER B 121 SER B 132 1 12 HELIX 21 21 GLY B 133 PHE B 138 5 6 HELIX 22 22 ASP B 145 VAL B 147 5 3 HELIX 23 23 HIS B 153 HIS B 165 1 13 HELIX 24 24 GLY B 167 SER B 169 5 3 HELIX 25 25 ASN B 177 GLY B 188 1 12 HELIX 26 26 ASP B 214 SER B 220 1 7 SHEET 1 A 6 HIS A 140 SER A 143 0 SHEET 2 A 6 LYS A 113 SER A 118 1 N SER A 118 O ILE A 142 SHEET 3 A 6 ALA A 6 PHE A 9 1 N PHE A 9 O ALA A 115 SHEET 4 A 6 ILE A 171 SER A 175 1 O VAL A 174 N VAL A 8 SHEET 5 A 6 VAL A 191 ILE A 194 1 O CYS A 192 N PHE A 173 SHEET 6 A 6 ILE A 210 VAL A 212 1 O ILE A 210 N TRP A 193 SHEET 1 B 6 HIS B 140 SER B 143 0 SHEET 2 B 6 LYS B 113 SER B 118 1 N ILE B 116 O ILE B 142 SHEET 3 B 6 ALA B 6 PHE B 9 1 N VAL B 7 O LYS B 113 SHEET 4 B 6 ILE B 171 SER B 175 1 O VAL B 174 N VAL B 8 SHEET 5 B 6 VAL B 191 ILE B 194 1 O CYS B 192 N PHE B 173 SHEET 6 B 6 ILE B 210 VAL B 212 1 O ILE B 210 N TRP B 193 SHEET 1 C 2 TYR B 16 ASP B 17 0 SHEET 2 C 2 THR B 95 PRO B 96 -1 O THR B 95 N ASP B 17 LINK N GLY A 0 NI NI A 230 1555 1555 2.12 LINK N MET A 1 NI NI A 230 1555 1555 1.97 LINK ND1 HIS A 2 NI NI A 230 1555 1555 1.87 LINK N HIS A 2 NI NI A 230 1555 1555 2.10 LINK N GLY B 0 NI NI B 230 1555 1555 2.49 LINK N MET B 1 NI NI B 230 1555 1555 2.34 LINK ND1 HIS B 2 NI NI B 230 1555 1555 2.15 LINK N HIS B 2 NI NI B 230 1555 1555 2.20 CISPEP 1 LYS A 151 PRO A 152 0 3.75 CISPEP 2 LYS B 151 PRO B 152 0 6.35 SITE 1 AC1 4 GLY A 0 MET A 1 HIS A 2 ALA A 3 SITE 1 AC2 7 ASP A 10 LEU A 11 TYR A 12 SER A 118 SITE 2 AC2 7 ASN A 119 LYS A 151 HOH A 289 SITE 1 AC3 4 GLY B 0 MET B 1 HIS B 2 ALA B 3 SITE 1 AC4 9 ASP B 10 LEU B 11 TYR B 12 SER B 118 SITE 2 AC4 9 ASN B 119 LYS B 151 ASP B 180 HOH B 253 SITE 3 AC4 9 HOH B 276 CRYST1 96.640 96.640 92.030 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010348 0.005974 0.000000 0.00000 SCALE2 0.000000 0.011948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010866 0.00000