data_3UW4 # _entry.id 3UW4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UW4 pdb_00003uw4 10.2210/pdb3uw4/pdb RCSB RCSB069282 ? ? WWPDB D_1000069282 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UW4 _pdbx_database_status.recvd_initial_deposition_date 2011-11-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maurer, B.' 1 'Hymowitz, S.' 2 # _citation.id primary _citation.title ;Discovery of a Potent Small-Molecule Antagonist of Inhibitor of Apoptosis (IAP) Proteins and Clinical Candidate for the Treatment of Cancer (GDC-0152). ; _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 4101 _citation.page_last 4113 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22413863 _citation.pdbx_database_id_DOI 10.1021/jm300060k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Flygare, J.A.' 1 ? primary 'Beresini, M.' 2 ? primary 'Budha, N.' 3 ? primary 'Chan, H.' 4 ? primary 'Chan, I.T.' 5 ? primary 'Cheeti, S.' 6 ? primary 'Cohen, F.' 7 ? primary 'Deshayes, K.' 8 ? primary 'Doerner, K.' 9 ? primary 'Eckhardt, S.G.' 10 ? primary 'Elliott, L.O.' 11 ? primary 'Feng, B.' 12 ? primary 'Franklin, M.C.' 13 ? primary 'Reisner, S.F.' 14 ? primary 'Gazzard, L.' 15 ? primary 'Halladay, J.' 16 ? primary 'Hymowitz, S.G.' 17 ? primary 'La, H.' 18 ? primary 'Lorusso, P.' 19 ? primary 'Maurer, B.' 20 ? primary 'Murray, L.' 21 ? primary 'Plise, E.' 22 ? primary 'Quan, C.' 23 ? primary 'Stephan, J.P.' 24 ? primary 'Young, S.G.' 25 ? primary 'Tom, J.' 26 ? primary 'Tsui, V.' 27 ? primary 'Um, J.' 28 ? primary 'Varfolomeev, E.' 29 ? primary 'Vucic, D.' 30 ? primary 'Wagner, A.J.' 31 ? primary 'Wallweber, H.J.' 32 ? primary 'Wang, L.' 33 ? primary 'Ware, J.' 34 ? primary 'Wen, Z.' 35 ? primary 'Wong, H.' 36 ? primary 'Wong, J.M.' 37 ? primary 'Wong, M.' 38 ? primary 'Wong, S.' 39 ? primary 'Yu, R.' 40 ? primary 'Zobel, K.' 41 ? primary 'Fairbrother, W.J.' 42 ? # _cell.entry_id 3UW4 _cell.length_a 35.691 _cell.length_b 37.380 _cell.length_c 57.598 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UW4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Baculoviral IAP repeat-containing protein 2, Baculoviral IAP repeat-containing protein 4' 10623.998 1 ? 'C292S, R332G' 'BIR3 residues 266-354' ? 2 polymer syn GDC0152 498.640 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 53 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;C-IAP1, IAP homolog B, Inhibitor of apoptosis protein 2, IAP-2, hIAP-2, hIAP2, RING finger protein 48, TNFR2-TRAF-signaling complex protein 2, E3 ubiquitin-protein ligase XIAP, IAP-like protein, ILP, hILP, Inhibitor of apoptosis protein 3, IAP-3, hIAP-3, hIAP3, X-linked inhibitor of apoptosis protein, X-linked IAP ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPGCEFLIRMKGQ EYINNIHLTHSL ; ;GSHMQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPGCEFLIRMKGQ EYINNIHLTHSL ; A ? 2 'polypeptide(L)' no yes '(MAA)(CHG)P(0DQ)' AXPX Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLN n 1 6 THR n 1 7 HIS n 1 8 ALA n 1 9 ALA n 1 10 ARG n 1 11 MET n 1 12 ARG n 1 13 THR n 1 14 PHE n 1 15 MET n 1 16 TYR n 1 17 TRP n 1 18 PRO n 1 19 SER n 1 20 SER n 1 21 VAL n 1 22 PRO n 1 23 VAL n 1 24 GLN n 1 25 PRO n 1 26 GLU n 1 27 GLN n 1 28 LEU n 1 29 ALA n 1 30 ALA n 1 31 ALA n 1 32 GLY n 1 33 PHE n 1 34 TYR n 1 35 TYR n 1 36 VAL n 1 37 GLY n 1 38 ARG n 1 39 ASN n 1 40 ASP n 1 41 ASP n 1 42 VAL n 1 43 LYS n 1 44 CYS n 1 45 PHE n 1 46 SER n 1 47 CYS n 1 48 ASP n 1 49 GLY n 1 50 GLY n 1 51 LEU n 1 52 ARG n 1 53 CYS n 1 54 TRP n 1 55 GLU n 1 56 SER n 1 57 GLY n 1 58 ASP n 1 59 ASP n 1 60 PRO n 1 61 TRP n 1 62 VAL n 1 63 GLU n 1 64 HIS n 1 65 ALA n 1 66 LYS n 1 67 TRP n 1 68 PHE n 1 69 PRO n 1 70 GLY n 1 71 CYS n 1 72 GLU n 1 73 PHE n 1 74 LEU n 1 75 ILE n 1 76 ARG n 1 77 MET n 1 78 LYS n 1 79 GLY n 1 80 GLN n 1 81 GLU n 1 82 TYR n 1 83 ILE n 1 84 ASN n 1 85 ASN n 1 86 ILE n 1 87 HIS n 1 88 LEU n 1 89 THR n 1 90 HIS n 1 91 SER n 1 92 LEU n 2 1 MAA n 2 2 CHG n 2 3 PRO n 2 4 0DQ n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 4 81 human ? 'API1, BIRC2, cIAP1, IAP2, MIHB, RNF48, API3, BIRC4, IAP3, XIAP' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET15b ? ? 1 2 sample ? 82 92 human ? 'API1, BIRC2, cIAP1, IAP2, MIHB, RNF48, API3, BIRC4, IAP3, XIAP' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET15b ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic inhibitor' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP BIRC2_HUMAN Q13490 1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQE 266 ? 2 UNP XIAP_HUMAN P98170 1 YINNIHLTHSL 338 ? 3 PDB 3UW4 3UW4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UW4 A 4 ? 81 ? Q13490 266 ? 343 ? 252 329 2 2 3UW4 A 82 ? 92 ? P98170 338 ? 348 ? 330 340 3 3 3UW4 Z 1 ? 4 ? 3UW4 1 ? 4 ? 1 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UW4 GLY A 1 ? UNP Q13490 ? ? 'expression tag' 249 1 1 3UW4 SER A 2 ? UNP Q13490 ? ? 'expression tag' 250 2 1 3UW4 HIS A 3 ? UNP Q13490 ? ? 'expression tag' 251 3 1 3UW4 ALA A 30 ? UNP Q13490 SER 292 'engineered mutation' 278 4 1 3UW4 SER A 46 ? UNP Q13490 CYS 308 'engineered mutation' 294 5 1 3UW4 GLY A 70 ? UNP Q13490 ARG 332 'engineered mutation' 318 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0DQ non-polymer . 4-phenyl-1,2,3-thiadiazol-5-amine ? 'C8 H7 N3 S' 177.226 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CHG 'L-peptide linking' . CYCLOHEXYL-GLYCINE ? 'C8 H15 N O2' 157.210 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAA 'L-peptide linking' n N-methyl-L-alanine ? 'C4 H9 N O2' 103.120 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3UW4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 32.4 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pdbx_details ;Protein Solution (4mg/mL cIAP with 1 mM GDC-0152, 50 mM HEPES pH 7.2, 300 mM NaCl, 0.2 mM TCEP) was mixed with equal volumes of resevoir solution (0.1 M Tris-HCl pH 8.6, 0.5 M Magnesium Formate)., VAPOR DIFFUSION, HANGING DROP, temperature 292K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3UW4 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.79 _reflns.number_obs 7548 _reflns.number_all 7548 _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 10.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.79 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.467 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 734 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UW4 _refine.ls_number_reflns_obs 7503 _refine.ls_number_reflns_all 7661 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.36 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 97.92 _refine.ls_R_factor_obs 0.18134 _refine.ls_R_factor_all 0.18134 _refine.ls_R_factor_R_work 0.17706 _refine.ls_R_factor_R_free 0.22113 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 736 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 21.068 _refine.aniso_B[1][1] -1.63 _refine.aniso_B[2][2] -0.98 _refine.aniso_B[3][3] 2.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 'pdb code 2UVL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.142 _refine.overall_SU_ML 0.091 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.830 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 746 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 801 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 31.36 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.020 ? 780 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.003 0.020 ? 3 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.370 1.959 ? 1053 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.023 3.000 ? 9 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.150 5.000 ? 86 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.199 23.077 ? 39 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.072 15.000 ? 112 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.882 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.089 0.200 ? 99 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.008 0.021 ? 618 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 25 _refine_ls_shell.d_res_high 1.790 _refine_ls_shell.d_res_low 1.827 _refine_ls_shell.number_reflns_R_work 325 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 96.82 _refine_ls_shell.R_factor_R_free 0.296 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UW4 _struct.title 'Crystal structure of cIAP1 BIR3 bound to GDC0152' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UW4 _struct_keywords.pdbx_keywords 'Apoptosis Inhibitor' _struct_keywords.text 'Apoptosis Inhibitor, BIR domain' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? THR A 13 ? THR A 254 THR A 261 1 ? 8 HELX_P HELX_P2 2 GLN A 24 ? ALA A 31 ? GLN A 272 ALA A 279 1 ? 8 HELX_P HELX_P3 3 ASP A 59 ? PHE A 68 ? ASP A 307 PHE A 316 1 ? 10 HELX_P HELX_P4 4 CYS A 71 ? GLY A 79 ? CYS A 319 GLY A 327 1 ? 9 HELX_P HELX_P5 5 GLY A 79 ? HIS A 90 ? GLY A 327 HIS A 338 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B MAA 1 C ? ? ? 1_555 B CHG 2 N ? ? Z MAA 1 Z CHG 2 1_555 ? ? ? ? ? ? ? 1.342 sing ? covale2 covale both ? B CHG 2 C ? ? ? 1_555 B PRO 3 N ? ? Z CHG 2 Z PRO 3 1_555 ? ? ? ? ? ? ? 1.344 sing ? covale3 covale both ? B PRO 3 C ? ? ? 1_555 B 0DQ 4 N25 ? ? Z PRO 3 Z 0DQ 4 1_555 ? ? ? ? ? ? ? 1.348 sing ? metalc1 metalc ? ? E HOH . O ? ? ? 1_555 D ZN . ZN ? ? A HOH 6 A ZN 402 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc2 metalc ? ? A CYS 44 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 292 A ZN 401 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc3 metalc ? ? A CYS 47 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 295 A ZN 401 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc4 metalc ? ? A HIS 64 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 312 A ZN 401 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc5 metalc ? ? A CYS 71 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 319 A ZN 401 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc6 metalc ? ? A HIS 87 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 335 A ZN 402 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc7 metalc ? ? A HIS 90 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 338 A ZN 402 1_555 ? ? ? ? ? ? ? 2.061 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 33 ? TYR A 35 ? PHE A 281 TYR A 283 A 2 VAL A 42 ? CYS A 44 ? VAL A 290 CYS A 292 A 3 GLY A 50 ? LEU A 51 ? GLY A 298 LEU A 299 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 34 ? N TYR A 282 O LYS A 43 ? O LYS A 291 A 2 3 N VAL A 42 ? N VAL A 290 O LEU A 51 ? O LEU A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 401 ? 4 'BINDING SITE FOR RESIDUE ZN A 401' AC2 Software A ZN 402 ? 4 'BINDING SITE FOR RESIDUE ZN A 402' AC3 Software ? ? ? ? 13 'BINDING SITE FOR CHAIN Z OF GDC0152' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 44 ? CYS A 292 . ? 1_555 ? 2 AC1 4 CYS A 47 ? CYS A 295 . ? 1_555 ? 3 AC1 4 HIS A 64 ? HIS A 312 . ? 1_555 ? 4 AC1 4 CYS A 71 ? CYS A 319 . ? 1_555 ? 5 AC2 4 HOH E . ? HOH A 6 . ? 1_555 ? 6 AC2 4 CYS A 53 ? CYS A 301 . ? 4_545 ? 7 AC2 4 HIS A 87 ? HIS A 335 . ? 1_555 ? 8 AC2 4 HIS A 90 ? HIS A 338 . ? 1_555 ? 9 AC3 13 HOH E . ? HOH A 8 . ? 4_445 ? 10 AC3 13 VAL A 42 ? VAL A 290 . ? 1_555 ? 11 AC3 13 GLY A 50 ? GLY A 298 . ? 1_555 ? 12 AC3 13 LEU A 51 ? LEU A 299 . ? 1_555 ? 13 AC3 13 ARG A 52 ? ARG A 300 . ? 1_555 ? 14 AC3 13 CYS A 53 ? CYS A 301 . ? 1_555 ? 15 AC3 13 GLU A 55 ? GLU A 303 . ? 1_555 ? 16 AC3 13 ASP A 58 ? ASP A 306 . ? 1_555 ? 17 AC3 13 GLU A 63 ? GLU A 311 . ? 1_555 ? 18 AC3 13 TRP A 67 ? TRP A 315 . ? 1_555 ? 19 AC3 13 PRO A 69 ? PRO A 317 . ? 4_445 ? 20 AC3 13 ASN A 84 ? ASN A 332 . ? 4_445 ? 21 AC3 13 HIS A 87 ? HIS A 335 . ? 4_445 ? # _database_PDB_matrix.entry_id 3UW4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UW4 _atom_sites.fract_transf_matrix[1][1] 0.028018 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026752 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017362 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 249 ? ? ? A . n A 1 2 SER 2 250 ? ? ? A . n A 1 3 HIS 3 251 ? ? ? A . n A 1 4 MET 4 252 252 MET MET A . n A 1 5 GLN 5 253 253 GLN GLN A . n A 1 6 THR 6 254 254 THR THR A . n A 1 7 HIS 7 255 255 HIS HIS A . n A 1 8 ALA 8 256 256 ALA ALA A . n A 1 9 ALA 9 257 257 ALA ALA A . n A 1 10 ARG 10 258 258 ARG ARG A . n A 1 11 MET 11 259 259 MET MET A . n A 1 12 ARG 12 260 260 ARG ARG A . n A 1 13 THR 13 261 261 THR THR A . n A 1 14 PHE 14 262 262 PHE PHE A . n A 1 15 MET 15 263 263 MET MET A . n A 1 16 TYR 16 264 264 TYR TYR A . n A 1 17 TRP 17 265 265 TRP TRP A . n A 1 18 PRO 18 266 266 PRO PRO A . n A 1 19 SER 19 267 267 SER SER A . n A 1 20 SER 20 268 268 SER SER A . n A 1 21 VAL 21 269 269 VAL VAL A . n A 1 22 PRO 22 270 270 PRO PRO A . n A 1 23 VAL 23 271 271 VAL VAL A . n A 1 24 GLN 24 272 272 GLN GLN A . n A 1 25 PRO 25 273 273 PRO PRO A . n A 1 26 GLU 26 274 274 GLU GLU A . n A 1 27 GLN 27 275 275 GLN GLN A . n A 1 28 LEU 28 276 276 LEU LEU A . n A 1 29 ALA 29 277 277 ALA ALA A . n A 1 30 ALA 30 278 278 ALA ALA A . n A 1 31 ALA 31 279 279 ALA ALA A . n A 1 32 GLY 32 280 280 GLY GLY A . n A 1 33 PHE 33 281 281 PHE PHE A . n A 1 34 TYR 34 282 282 TYR TYR A . n A 1 35 TYR 35 283 283 TYR TYR A . n A 1 36 VAL 36 284 284 VAL VAL A . n A 1 37 GLY 37 285 285 GLY GLY A . n A 1 38 ARG 38 286 286 ARG ARG A . n A 1 39 ASN 39 287 287 ASN ASN A . n A 1 40 ASP 40 288 288 ASP ASP A . n A 1 41 ASP 41 289 289 ASP ASP A . n A 1 42 VAL 42 290 290 VAL VAL A . n A 1 43 LYS 43 291 291 LYS LYS A . n A 1 44 CYS 44 292 292 CYS CYS A . n A 1 45 PHE 45 293 293 PHE PHE A . n A 1 46 SER 46 294 294 SER SER A . n A 1 47 CYS 47 295 295 CYS CYS A . n A 1 48 ASP 48 296 296 ASP ASP A . n A 1 49 GLY 49 297 297 GLY GLY A . n A 1 50 GLY 50 298 298 GLY GLY A . n A 1 51 LEU 51 299 299 LEU LEU A . n A 1 52 ARG 52 300 300 ARG ARG A . n A 1 53 CYS 53 301 301 CYS CYS A . n A 1 54 TRP 54 302 302 TRP TRP A . n A 1 55 GLU 55 303 303 GLU GLU A . n A 1 56 SER 56 304 304 SER SER A . n A 1 57 GLY 57 305 305 GLY GLY A . n A 1 58 ASP 58 306 306 ASP ASP A . n A 1 59 ASP 59 307 307 ASP ASP A . n A 1 60 PRO 60 308 308 PRO PRO A . n A 1 61 TRP 61 309 309 TRP TRP A . n A 1 62 VAL 62 310 310 VAL VAL A . n A 1 63 GLU 63 311 311 GLU GLU A . n A 1 64 HIS 64 312 312 HIS HIS A . n A 1 65 ALA 65 313 313 ALA ALA A . n A 1 66 LYS 66 314 314 LYS LYS A . n A 1 67 TRP 67 315 315 TRP TRP A . n A 1 68 PHE 68 316 316 PHE PHE A . n A 1 69 PRO 69 317 317 PRO PRO A . n A 1 70 GLY 70 318 318 GLY GLY A . n A 1 71 CYS 71 319 319 CYS CYS A . n A 1 72 GLU 72 320 320 GLU GLU A . n A 1 73 PHE 73 321 321 PHE PHE A . n A 1 74 LEU 74 322 322 LEU LEU A . n A 1 75 ILE 75 323 323 ILE ILE A . n A 1 76 ARG 76 324 324 ARG ARG A . n A 1 77 MET 77 325 325 MET MET A . n A 1 78 LYS 78 326 326 LYS LYS A . n A 1 79 GLY 79 327 327 GLY GLY A . n A 1 80 GLN 80 328 328 GLN GLN A . n A 1 81 GLU 81 329 329 GLU GLU A . n A 1 82 TYR 82 330 330 TYR TYR A . n A 1 83 ILE 83 331 331 ILE ILE A . n A 1 84 ASN 84 332 332 ASN ASN A . n A 1 85 ASN 85 333 333 ASN ASN A . n A 1 86 ILE 86 334 334 ILE ILE A . n A 1 87 HIS 87 335 335 HIS HIS A . n A 1 88 LEU 88 336 336 LEU LEU A . n A 1 89 THR 89 337 337 THR THR A . n A 1 90 HIS 90 338 338 HIS HIS A . n A 1 91 SER 91 339 ? ? ? A . n A 1 92 LEU 92 340 ? ? ? A . n B 2 1 MAA 1 1 1 MAA MAA Z . n B 2 2 CHG 2 2 2 CHG CHG Z . n B 2 3 PRO 3 3 3 PRO PRO Z . n B 2 4 0DQ 4 4 4 0DQ 0DQ Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 401 401 ZN ZN A . D 3 ZN 1 402 402 ZN ZN A . E 4 HOH 1 2 2 HOH HOH A . E 4 HOH 2 3 3 HOH HOH A . E 4 HOH 3 4 4 HOH HOH A . E 4 HOH 4 5 5 HOH HOH A . E 4 HOH 5 6 6 HOH HOH A . E 4 HOH 6 7 7 HOH HOH A . E 4 HOH 7 8 8 HOH HOH A . E 4 HOH 8 9 9 HOH HOH A . E 4 HOH 9 10 10 HOH HOH A . E 4 HOH 10 11 11 HOH HOH A . E 4 HOH 11 12 12 HOH HOH A . E 4 HOH 12 13 13 HOH HOH A . E 4 HOH 13 14 14 HOH HOH A . E 4 HOH 14 15 15 HOH HOH A . E 4 HOH 15 16 16 HOH HOH A . E 4 HOH 16 17 17 HOH HOH A . E 4 HOH 17 18 18 HOH HOH A . E 4 HOH 18 19 19 HOH HOH A . E 4 HOH 19 20 20 HOH HOH A . E 4 HOH 20 21 21 HOH HOH A . E 4 HOH 21 22 22 HOH HOH A . E 4 HOH 22 23 23 HOH HOH A . E 4 HOH 23 25 25 HOH HOH A . E 4 HOH 24 27 27 HOH HOH A . E 4 HOH 25 28 28 HOH HOH A . E 4 HOH 26 29 29 HOH HOH A . E 4 HOH 27 30 30 HOH HOH A . E 4 HOH 28 31 31 HOH HOH A . E 4 HOH 29 32 32 HOH HOH A . E 4 HOH 30 33 33 HOH HOH A . E 4 HOH 31 34 34 HOH HOH A . E 4 HOH 32 35 35 HOH HOH A . E 4 HOH 33 36 36 HOH HOH A . E 4 HOH 34 37 37 HOH HOH A . E 4 HOH 35 38 38 HOH HOH A . E 4 HOH 36 39 39 HOH HOH A . E 4 HOH 37 40 40 HOH HOH A . E 4 HOH 38 41 41 HOH HOH A . E 4 HOH 39 42 42 HOH HOH A . E 4 HOH 40 43 43 HOH HOH A . E 4 HOH 41 44 44 HOH HOH A . E 4 HOH 42 45 45 HOH HOH A . E 4 HOH 43 47 47 HOH HOH A . E 4 HOH 44 48 48 HOH HOH A . E 4 HOH 45 49 49 HOH HOH A . E 4 HOH 46 50 50 HOH HOH A . E 4 HOH 47 51 51 HOH HOH A . E 4 HOH 48 52 52 HOH HOH A . E 4 HOH 49 55 55 HOH HOH A . E 4 HOH 50 57 57 HOH HOH A . E 4 HOH 51 58 58 HOH HOH A . E 4 HOH 52 60 60 HOH HOH A . E 4 HOH 53 62 62 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_001020 _pdbx_molecule_features.name GDC0152 _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001020 _pdbx_molecule.asym_id B # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id MAA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id Z _pdbx_struct_mod_residue.auth_comp_id MAA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ALA _pdbx_struct_mod_residue.details N-METHYL-L-ALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1110 ? 1 MORE -24 ? 1 'SSA (A^2)' 5190 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 6 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 ND1 ? A HIS 87 ? A HIS 335 ? 1_555 98.0 ? 2 O ? E HOH . ? A HOH 6 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 90 ? A HIS 338 ? 1_555 112.4 ? 3 ND1 ? A HIS 87 ? A HIS 335 ? 1_555 ZN ? D ZN . ? A ZN 402 ? 1_555 NE2 ? A HIS 90 ? A HIS 338 ? 1_555 102.2 ? 4 SG ? A CYS 44 ? A CYS 292 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 47 ? A CYS 295 ? 1_555 107.4 ? 5 SG ? A CYS 44 ? A CYS 292 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 64 ? A HIS 312 ? 1_555 105.1 ? 6 SG ? A CYS 47 ? A CYS 295 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 NE2 ? A HIS 64 ? A HIS 312 ? 1_555 115.3 ? 7 SG ? A CYS 44 ? A CYS 292 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 71 ? A CYS 319 ? 1_555 113.2 ? 8 SG ? A CYS 47 ? A CYS 295 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 71 ? A CYS 319 ? 1_555 109.0 ? 9 NE2 ? A HIS 64 ? A HIS 312 ? 1_555 ZN ? C ZN . ? A ZN 401 ? 1_555 SG ? A CYS 71 ? A CYS 319 ? 1_555 106.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-22 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-05-23 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2017-08-02 6 'Structure model' 1 5 2023-09-13 7 'Structure model' 1 6 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Other 4 5 'Structure model' 'Refinement description' 5 5 'Structure model' 'Source and taxonomy' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' 10 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' entity_src_gen 2 5 'Structure model' software 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' pdbx_struct_conn_angle 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_ref_seq_dif 10 7 'Structure model' chem_comp_atom 11 7 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.value' 14 6 'Structure model' '_struct_conn.pdbx_dist_value' 15 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 6 'Structure model' '_struct_ref_seq_dif.details' 28 7 'Structure model' '_chem_comp_atom.atom_id' 29 7 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -6.7745 _pdbx_refine_tls.origin_y 2.3651 _pdbx_refine_tls.origin_z -3.9479 _pdbx_refine_tls.T[1][1] 0.0282 _pdbx_refine_tls.T[2][2] 0.0134 _pdbx_refine_tls.T[3][3] 0.0090 _pdbx_refine_tls.T[1][2] -0.0062 _pdbx_refine_tls.T[1][3] 0.0095 _pdbx_refine_tls.T[2][3] -0.0051 _pdbx_refine_tls.L[1][1] 2.2985 _pdbx_refine_tls.L[2][2] 1.4960 _pdbx_refine_tls.L[3][3] 1.2721 _pdbx_refine_tls.L[1][2] -0.8087 _pdbx_refine_tls.L[1][3] 0.6958 _pdbx_refine_tls.L[2][3] -0.6166 _pdbx_refine_tls.S[1][1] 0.0037 _pdbx_refine_tls.S[1][2] 0.0546 _pdbx_refine_tls.S[1][3] 0.0889 _pdbx_refine_tls.S[2][1] 0.0238 _pdbx_refine_tls.S[2][2] -0.0242 _pdbx_refine_tls.S[2][3] -0.0263 _pdbx_refine_tls.S[3][1] -0.0054 _pdbx_refine_tls.S[3][2] 0.0322 _pdbx_refine_tls.S[3][3] 0.0205 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 252 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 402 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 287 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 46.02 _pdbx_validate_torsion.psi -131.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 249 ? A GLY 1 2 1 Y 1 A SER 250 ? A SER 2 3 1 Y 1 A HIS 251 ? A HIS 3 4 1 Y 1 A SER 339 ? A SER 91 5 1 Y 1 A LEU 340 ? A LEU 92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0DQ N25 N N N 1 0DQ C26 C Y N 2 0DQ C27 C Y N 3 0DQ N28 N Y N 4 0DQ N29 N Y N 5 0DQ S30 S Y N 6 0DQ C31 C Y N 7 0DQ C32 C Y N 8 0DQ C33 C Y N 9 0DQ C34 C Y N 10 0DQ C35 C Y N 11 0DQ C36 C Y N 12 0DQ H25 H N N 13 0DQ H26 H N N 14 0DQ H27 H N N 15 0DQ H28 H N N 16 0DQ H29 H N N 17 0DQ H30 H N N 18 0DQ H2 H N N 19 ALA N N N N 20 ALA CA C N S 21 ALA C C N N 22 ALA O O N N 23 ALA CB C N N 24 ALA OXT O N N 25 ALA H H N N 26 ALA H2 H N N 27 ALA HA H N N 28 ALA HB1 H N N 29 ALA HB2 H N N 30 ALA HB3 H N N 31 ALA HXT H N N 32 ARG N N N N 33 ARG CA C N S 34 ARG C C N N 35 ARG O O N N 36 ARG CB C N N 37 ARG CG C N N 38 ARG CD C N N 39 ARG NE N N N 40 ARG CZ C N N 41 ARG NH1 N N N 42 ARG NH2 N N N 43 ARG OXT O N N 44 ARG H H N N 45 ARG H2 H N N 46 ARG HA H N N 47 ARG HB2 H N N 48 ARG HB3 H N N 49 ARG HG2 H N N 50 ARG HG3 H N N 51 ARG HD2 H N N 52 ARG HD3 H N N 53 ARG HE H N N 54 ARG HH11 H N N 55 ARG HH12 H N N 56 ARG HH21 H N N 57 ARG HH22 H N N 58 ARG HXT H N N 59 ASN N N N N 60 ASN CA C N S 61 ASN C C N N 62 ASN O O N N 63 ASN CB C N N 64 ASN CG C N N 65 ASN OD1 O N N 66 ASN ND2 N N N 67 ASN OXT O N N 68 ASN H H N N 69 ASN H2 H N N 70 ASN HA H N N 71 ASN HB2 H N N 72 ASN HB3 H N N 73 ASN HD21 H N N 74 ASN HD22 H N N 75 ASN HXT H N N 76 ASP N N N N 77 ASP CA C N S 78 ASP C C N N 79 ASP O O N N 80 ASP CB C N N 81 ASP CG C N N 82 ASP OD1 O N N 83 ASP OD2 O N N 84 ASP OXT O N N 85 ASP H H N N 86 ASP H2 H N N 87 ASP HA H N N 88 ASP HB2 H N N 89 ASP HB3 H N N 90 ASP HD2 H N N 91 ASP HXT H N N 92 CHG N N N N 93 CHG CA C N S 94 CHG C C N N 95 CHG O O N N 96 CHG C1 C N N 97 CHG C2 C N N 98 CHG C3 C N N 99 CHG C4 C N N 100 CHG C5 C N N 101 CHG C6 C N N 102 CHG OXT O N N 103 CHG H H N N 104 CHG H2 H N N 105 CHG HA H N N 106 CHG H1 H N N 107 CHG H2B H N N 108 CHG H2A H N N 109 CHG H3 H N N 110 CHG H3A H N N 111 CHG H4 H N N 112 CHG H4A H N N 113 CHG H5 H N N 114 CHG H5A H N N 115 CHG H6 H N N 116 CHG H6A H N N 117 CHG HXT H N N 118 CYS N N N N 119 CYS CA C N R 120 CYS C C N N 121 CYS O O N N 122 CYS CB C N N 123 CYS SG S N N 124 CYS OXT O N N 125 CYS H H N N 126 CYS H2 H N N 127 CYS HA H N N 128 CYS HB2 H N N 129 CYS HB3 H N N 130 CYS HG H N N 131 CYS HXT H N N 132 GLN N N N N 133 GLN CA C N S 134 GLN C C N N 135 GLN O O N N 136 GLN CB C N N 137 GLN CG C N N 138 GLN CD C N N 139 GLN OE1 O N N 140 GLN NE2 N N N 141 GLN OXT O N N 142 GLN H H N N 143 GLN H2 H N N 144 GLN HA H N N 145 GLN HB2 H N N 146 GLN HB3 H N N 147 GLN HG2 H N N 148 GLN HG3 H N N 149 GLN HE21 H N N 150 GLN HE22 H N N 151 GLN HXT H N N 152 GLU N N N N 153 GLU CA C N S 154 GLU C C N N 155 GLU O O N N 156 GLU CB C N N 157 GLU CG C N N 158 GLU CD C N N 159 GLU OE1 O N N 160 GLU OE2 O N N 161 GLU OXT O N N 162 GLU H H N N 163 GLU H2 H N N 164 GLU HA H N N 165 GLU HB2 H N N 166 GLU HB3 H N N 167 GLU HG2 H N N 168 GLU HG3 H N N 169 GLU HE2 H N N 170 GLU HXT H N N 171 GLY N N N N 172 GLY CA C N N 173 GLY C C N N 174 GLY O O N N 175 GLY OXT O N N 176 GLY H H N N 177 GLY H2 H N N 178 GLY HA2 H N N 179 GLY HA3 H N N 180 GLY HXT H N N 181 HIS N N N N 182 HIS CA C N S 183 HIS C C N N 184 HIS O O N N 185 HIS CB C N N 186 HIS CG C Y N 187 HIS ND1 N Y N 188 HIS CD2 C Y N 189 HIS CE1 C Y N 190 HIS NE2 N Y N 191 HIS OXT O N N 192 HIS H H N N 193 HIS H2 H N N 194 HIS HA H N N 195 HIS HB2 H N N 196 HIS HB3 H N N 197 HIS HD1 H N N 198 HIS HD2 H N N 199 HIS HE1 H N N 200 HIS HE2 H N N 201 HIS HXT H N N 202 HOH O O N N 203 HOH H1 H N N 204 HOH H2 H N N 205 ILE N N N N 206 ILE CA C N S 207 ILE C C N N 208 ILE O O N N 209 ILE CB C N S 210 ILE CG1 C N N 211 ILE CG2 C N N 212 ILE CD1 C N N 213 ILE OXT O N N 214 ILE H H N N 215 ILE H2 H N N 216 ILE HA H N N 217 ILE HB H N N 218 ILE HG12 H N N 219 ILE HG13 H N N 220 ILE HG21 H N N 221 ILE HG22 H N N 222 ILE HG23 H N N 223 ILE HD11 H N N 224 ILE HD12 H N N 225 ILE HD13 H N N 226 ILE HXT H N N 227 LEU N N N N 228 LEU CA C N S 229 LEU C C N N 230 LEU O O N N 231 LEU CB C N N 232 LEU CG C N N 233 LEU CD1 C N N 234 LEU CD2 C N N 235 LEU OXT O N N 236 LEU H H N N 237 LEU H2 H N N 238 LEU HA H N N 239 LEU HB2 H N N 240 LEU HB3 H N N 241 LEU HG H N N 242 LEU HD11 H N N 243 LEU HD12 H N N 244 LEU HD13 H N N 245 LEU HD21 H N N 246 LEU HD22 H N N 247 LEU HD23 H N N 248 LEU HXT H N N 249 LYS N N N N 250 LYS CA C N S 251 LYS C C N N 252 LYS O O N N 253 LYS CB C N N 254 LYS CG C N N 255 LYS CD C N N 256 LYS CE C N N 257 LYS NZ N N N 258 LYS OXT O N N 259 LYS H H N N 260 LYS H2 H N N 261 LYS HA H N N 262 LYS HB2 H N N 263 LYS HB3 H N N 264 LYS HG2 H N N 265 LYS HG3 H N N 266 LYS HD2 H N N 267 LYS HD3 H N N 268 LYS HE2 H N N 269 LYS HE3 H N N 270 LYS HZ1 H N N 271 LYS HZ2 H N N 272 LYS HZ3 H N N 273 LYS HXT H N N 274 MAA N N N N 275 MAA CM C N N 276 MAA CA C N S 277 MAA CB C N N 278 MAA C C N N 279 MAA O O N N 280 MAA OXT O N N 281 MAA H H N N 282 MAA HM1 H N N 283 MAA HM2 H N N 284 MAA HM3 H N N 285 MAA HA H N N 286 MAA HB1 H N N 287 MAA HB2 H N N 288 MAA HB3 H N N 289 MAA HXT H N N 290 MET N N N N 291 MET CA C N S 292 MET C C N N 293 MET O O N N 294 MET CB C N N 295 MET CG C N N 296 MET SD S N N 297 MET CE C N N 298 MET OXT O N N 299 MET H H N N 300 MET H2 H N N 301 MET HA H N N 302 MET HB2 H N N 303 MET HB3 H N N 304 MET HG2 H N N 305 MET HG3 H N N 306 MET HE1 H N N 307 MET HE2 H N N 308 MET HE3 H N N 309 MET HXT H N N 310 PHE N N N N 311 PHE CA C N S 312 PHE C C N N 313 PHE O O N N 314 PHE CB C N N 315 PHE CG C Y N 316 PHE CD1 C Y N 317 PHE CD2 C Y N 318 PHE CE1 C Y N 319 PHE CE2 C Y N 320 PHE CZ C Y N 321 PHE OXT O N N 322 PHE H H N N 323 PHE H2 H N N 324 PHE HA H N N 325 PHE HB2 H N N 326 PHE HB3 H N N 327 PHE HD1 H N N 328 PHE HD2 H N N 329 PHE HE1 H N N 330 PHE HE2 H N N 331 PHE HZ H N N 332 PHE HXT H N N 333 PRO N N N N 334 PRO CA C N S 335 PRO C C N N 336 PRO O O N N 337 PRO CB C N N 338 PRO CG C N N 339 PRO CD C N N 340 PRO OXT O N N 341 PRO H H N N 342 PRO HA H N N 343 PRO HB2 H N N 344 PRO HB3 H N N 345 PRO HG2 H N N 346 PRO HG3 H N N 347 PRO HD2 H N N 348 PRO HD3 H N N 349 PRO HXT H N N 350 SER N N N N 351 SER CA C N S 352 SER C C N N 353 SER O O N N 354 SER CB C N N 355 SER OG O N N 356 SER OXT O N N 357 SER H H N N 358 SER H2 H N N 359 SER HA H N N 360 SER HB2 H N N 361 SER HB3 H N N 362 SER HG H N N 363 SER HXT H N N 364 THR N N N N 365 THR CA C N S 366 THR C C N N 367 THR O O N N 368 THR CB C N R 369 THR OG1 O N N 370 THR CG2 C N N 371 THR OXT O N N 372 THR H H N N 373 THR H2 H N N 374 THR HA H N N 375 THR HB H N N 376 THR HG1 H N N 377 THR HG21 H N N 378 THR HG22 H N N 379 THR HG23 H N N 380 THR HXT H N N 381 TRP N N N N 382 TRP CA C N S 383 TRP C C N N 384 TRP O O N N 385 TRP CB C N N 386 TRP CG C Y N 387 TRP CD1 C Y N 388 TRP CD2 C Y N 389 TRP NE1 N Y N 390 TRP CE2 C Y N 391 TRP CE3 C Y N 392 TRP CZ2 C Y N 393 TRP CZ3 C Y N 394 TRP CH2 C Y N 395 TRP OXT O N N 396 TRP H H N N 397 TRP H2 H N N 398 TRP HA H N N 399 TRP HB2 H N N 400 TRP HB3 H N N 401 TRP HD1 H N N 402 TRP HE1 H N N 403 TRP HE3 H N N 404 TRP HZ2 H N N 405 TRP HZ3 H N N 406 TRP HH2 H N N 407 TRP HXT H N N 408 TYR N N N N 409 TYR CA C N S 410 TYR C C N N 411 TYR O O N N 412 TYR CB C N N 413 TYR CG C Y N 414 TYR CD1 C Y N 415 TYR CD2 C Y N 416 TYR CE1 C Y N 417 TYR CE2 C Y N 418 TYR CZ C Y N 419 TYR OH O N N 420 TYR OXT O N N 421 TYR H H N N 422 TYR H2 H N N 423 TYR HA H N N 424 TYR HB2 H N N 425 TYR HB3 H N N 426 TYR HD1 H N N 427 TYR HD2 H N N 428 TYR HE1 H N N 429 TYR HE2 H N N 430 TYR HH H N N 431 TYR HXT H N N 432 VAL N N N N 433 VAL CA C N S 434 VAL C C N N 435 VAL O O N N 436 VAL CB C N N 437 VAL CG1 C N N 438 VAL CG2 C N N 439 VAL OXT O N N 440 VAL H H N N 441 VAL H2 H N N 442 VAL HA H N N 443 VAL HB H N N 444 VAL HG11 H N N 445 VAL HG12 H N N 446 VAL HG13 H N N 447 VAL HG21 H N N 448 VAL HG22 H N N 449 VAL HG23 H N N 450 VAL HXT H N N 451 ZN ZN ZN N N 452 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DQ C35 C36 doub Y N 1 0DQ C35 C34 sing Y N 2 0DQ C36 C31 sing Y N 3 0DQ N28 N29 doub Y N 4 0DQ N28 C27 sing Y N 5 0DQ N29 S30 sing Y N 6 0DQ C34 C33 doub Y N 7 0DQ C31 C27 sing N N 8 0DQ C31 C32 doub Y N 9 0DQ C27 C26 doub Y N 10 0DQ C33 C32 sing Y N 11 0DQ S30 C26 sing Y N 12 0DQ C26 N25 sing N N 13 0DQ N25 H25 sing N N 14 0DQ C32 H26 sing N N 15 0DQ C33 H27 sing N N 16 0DQ C34 H28 sing N N 17 0DQ C35 H29 sing N N 18 0DQ C36 H30 sing N N 19 0DQ N25 H2 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 ARG N CA sing N N 33 ARG N H sing N N 34 ARG N H2 sing N N 35 ARG CA C sing N N 36 ARG CA CB sing N N 37 ARG CA HA sing N N 38 ARG C O doub N N 39 ARG C OXT sing N N 40 ARG CB CG sing N N 41 ARG CB HB2 sing N N 42 ARG CB HB3 sing N N 43 ARG CG CD sing N N 44 ARG CG HG2 sing N N 45 ARG CG HG3 sing N N 46 ARG CD NE sing N N 47 ARG CD HD2 sing N N 48 ARG CD HD3 sing N N 49 ARG NE CZ sing N N 50 ARG NE HE sing N N 51 ARG CZ NH1 sing N N 52 ARG CZ NH2 doub N N 53 ARG NH1 HH11 sing N N 54 ARG NH1 HH12 sing N N 55 ARG NH2 HH21 sing N N 56 ARG NH2 HH22 sing N N 57 ARG OXT HXT sing N N 58 ASN N CA sing N N 59 ASN N H sing N N 60 ASN N H2 sing N N 61 ASN CA C sing N N 62 ASN CA CB sing N N 63 ASN CA HA sing N N 64 ASN C O doub N N 65 ASN C OXT sing N N 66 ASN CB CG sing N N 67 ASN CB HB2 sing N N 68 ASN CB HB3 sing N N 69 ASN CG OD1 doub N N 70 ASN CG ND2 sing N N 71 ASN ND2 HD21 sing N N 72 ASN ND2 HD22 sing N N 73 ASN OXT HXT sing N N 74 ASP N CA sing N N 75 ASP N H sing N N 76 ASP N H2 sing N N 77 ASP CA C sing N N 78 ASP CA CB sing N N 79 ASP CA HA sing N N 80 ASP C O doub N N 81 ASP C OXT sing N N 82 ASP CB CG sing N N 83 ASP CB HB2 sing N N 84 ASP CB HB3 sing N N 85 ASP CG OD1 doub N N 86 ASP CG OD2 sing N N 87 ASP OD2 HD2 sing N N 88 ASP OXT HXT sing N N 89 CHG N CA sing N N 90 CHG N H sing N N 91 CHG N H2 sing N N 92 CHG C1 CA sing N N 93 CHG CA C sing N N 94 CHG CA HA sing N N 95 CHG O C doub N N 96 CHG C OXT sing N N 97 CHG C6 C1 sing N N 98 CHG C2 C1 sing N N 99 CHG C1 H1 sing N N 100 CHG C3 C2 sing N N 101 CHG C2 H2B sing N N 102 CHG C2 H2A sing N N 103 CHG C4 C3 sing N N 104 CHG C3 H3 sing N N 105 CHG C3 H3A sing N N 106 CHG C4 C5 sing N N 107 CHG C4 H4 sing N N 108 CHG C4 H4A sing N N 109 CHG C5 C6 sing N N 110 CHG C5 H5 sing N N 111 CHG C5 H5A sing N N 112 CHG C6 H6 sing N N 113 CHG C6 H6A sing N N 114 CHG OXT HXT sing N N 115 CYS N CA sing N N 116 CYS N H sing N N 117 CYS N H2 sing N N 118 CYS CA C sing N N 119 CYS CA CB sing N N 120 CYS CA HA sing N N 121 CYS C O doub N N 122 CYS C OXT sing N N 123 CYS CB SG sing N N 124 CYS CB HB2 sing N N 125 CYS CB HB3 sing N N 126 CYS SG HG sing N N 127 CYS OXT HXT sing N N 128 GLN N CA sing N N 129 GLN N H sing N N 130 GLN N H2 sing N N 131 GLN CA C sing N N 132 GLN CA CB sing N N 133 GLN CA HA sing N N 134 GLN C O doub N N 135 GLN C OXT sing N N 136 GLN CB CG sing N N 137 GLN CB HB2 sing N N 138 GLN CB HB3 sing N N 139 GLN CG CD sing N N 140 GLN CG HG2 sing N N 141 GLN CG HG3 sing N N 142 GLN CD OE1 doub N N 143 GLN CD NE2 sing N N 144 GLN NE2 HE21 sing N N 145 GLN NE2 HE22 sing N N 146 GLN OXT HXT sing N N 147 GLU N CA sing N N 148 GLU N H sing N N 149 GLU N H2 sing N N 150 GLU CA C sing N N 151 GLU CA CB sing N N 152 GLU CA HA sing N N 153 GLU C O doub N N 154 GLU C OXT sing N N 155 GLU CB CG sing N N 156 GLU CB HB2 sing N N 157 GLU CB HB3 sing N N 158 GLU CG CD sing N N 159 GLU CG HG2 sing N N 160 GLU CG HG3 sing N N 161 GLU CD OE1 doub N N 162 GLU CD OE2 sing N N 163 GLU OE2 HE2 sing N N 164 GLU OXT HXT sing N N 165 GLY N CA sing N N 166 GLY N H sing N N 167 GLY N H2 sing N N 168 GLY CA C sing N N 169 GLY CA HA2 sing N N 170 GLY CA HA3 sing N N 171 GLY C O doub N N 172 GLY C OXT sing N N 173 GLY OXT HXT sing N N 174 HIS N CA sing N N 175 HIS N H sing N N 176 HIS N H2 sing N N 177 HIS CA C sing N N 178 HIS CA CB sing N N 179 HIS CA HA sing N N 180 HIS C O doub N N 181 HIS C OXT sing N N 182 HIS CB CG sing N N 183 HIS CB HB2 sing N N 184 HIS CB HB3 sing N N 185 HIS CG ND1 sing Y N 186 HIS CG CD2 doub Y N 187 HIS ND1 CE1 doub Y N 188 HIS ND1 HD1 sing N N 189 HIS CD2 NE2 sing Y N 190 HIS CD2 HD2 sing N N 191 HIS CE1 NE2 sing Y N 192 HIS CE1 HE1 sing N N 193 HIS NE2 HE2 sing N N 194 HIS OXT HXT sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 ILE N CA sing N N 198 ILE N H sing N N 199 ILE N H2 sing N N 200 ILE CA C sing N N 201 ILE CA CB sing N N 202 ILE CA HA sing N N 203 ILE C O doub N N 204 ILE C OXT sing N N 205 ILE CB CG1 sing N N 206 ILE CB CG2 sing N N 207 ILE CB HB sing N N 208 ILE CG1 CD1 sing N N 209 ILE CG1 HG12 sing N N 210 ILE CG1 HG13 sing N N 211 ILE CG2 HG21 sing N N 212 ILE CG2 HG22 sing N N 213 ILE CG2 HG23 sing N N 214 ILE CD1 HD11 sing N N 215 ILE CD1 HD12 sing N N 216 ILE CD1 HD13 sing N N 217 ILE OXT HXT sing N N 218 LEU N CA sing N N 219 LEU N H sing N N 220 LEU N H2 sing N N 221 LEU CA C sing N N 222 LEU CA CB sing N N 223 LEU CA HA sing N N 224 LEU C O doub N N 225 LEU C OXT sing N N 226 LEU CB CG sing N N 227 LEU CB HB2 sing N N 228 LEU CB HB3 sing N N 229 LEU CG CD1 sing N N 230 LEU CG CD2 sing N N 231 LEU CG HG sing N N 232 LEU CD1 HD11 sing N N 233 LEU CD1 HD12 sing N N 234 LEU CD1 HD13 sing N N 235 LEU CD2 HD21 sing N N 236 LEU CD2 HD22 sing N N 237 LEU CD2 HD23 sing N N 238 LEU OXT HXT sing N N 239 LYS N CA sing N N 240 LYS N H sing N N 241 LYS N H2 sing N N 242 LYS CA C sing N N 243 LYS CA CB sing N N 244 LYS CA HA sing N N 245 LYS C O doub N N 246 LYS C OXT sing N N 247 LYS CB CG sing N N 248 LYS CB HB2 sing N N 249 LYS CB HB3 sing N N 250 LYS CG CD sing N N 251 LYS CG HG2 sing N N 252 LYS CG HG3 sing N N 253 LYS CD CE sing N N 254 LYS CD HD2 sing N N 255 LYS CD HD3 sing N N 256 LYS CE NZ sing N N 257 LYS CE HE2 sing N N 258 LYS CE HE3 sing N N 259 LYS NZ HZ1 sing N N 260 LYS NZ HZ2 sing N N 261 LYS NZ HZ3 sing N N 262 LYS OXT HXT sing N N 263 MAA N CM sing N N 264 MAA N CA sing N N 265 MAA N H sing N N 266 MAA CM HM1 sing N N 267 MAA CM HM2 sing N N 268 MAA CM HM3 sing N N 269 MAA CA CB sing N N 270 MAA CA C sing N N 271 MAA CA HA sing N N 272 MAA CB HB1 sing N N 273 MAA CB HB2 sing N N 274 MAA CB HB3 sing N N 275 MAA C O doub N N 276 MAA C OXT sing N N 277 MAA OXT HXT sing N N 278 MET N CA sing N N 279 MET N H sing N N 280 MET N H2 sing N N 281 MET CA C sing N N 282 MET CA CB sing N N 283 MET CA HA sing N N 284 MET C O doub N N 285 MET C OXT sing N N 286 MET CB CG sing N N 287 MET CB HB2 sing N N 288 MET CB HB3 sing N N 289 MET CG SD sing N N 290 MET CG HG2 sing N N 291 MET CG HG3 sing N N 292 MET SD CE sing N N 293 MET CE HE1 sing N N 294 MET CE HE2 sing N N 295 MET CE HE3 sing N N 296 MET OXT HXT sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PRO N CA sing N N 321 PRO N CD sing N N 322 PRO N H sing N N 323 PRO CA C sing N N 324 PRO CA CB sing N N 325 PRO CA HA sing N N 326 PRO C O doub N N 327 PRO C OXT sing N N 328 PRO CB CG sing N N 329 PRO CB HB2 sing N N 330 PRO CB HB3 sing N N 331 PRO CG CD sing N N 332 PRO CG HG2 sing N N 333 PRO CG HG3 sing N N 334 PRO CD HD2 sing N N 335 PRO CD HD3 sing N N 336 PRO OXT HXT sing N N 337 SER N CA sing N N 338 SER N H sing N N 339 SER N H2 sing N N 340 SER CA C sing N N 341 SER CA CB sing N N 342 SER CA HA sing N N 343 SER C O doub N N 344 SER C OXT sing N N 345 SER CB OG sing N N 346 SER CB HB2 sing N N 347 SER CB HB3 sing N N 348 SER OG HG sing N N 349 SER OXT HXT sing N N 350 THR N CA sing N N 351 THR N H sing N N 352 THR N H2 sing N N 353 THR CA C sing N N 354 THR CA CB sing N N 355 THR CA HA sing N N 356 THR C O doub N N 357 THR C OXT sing N N 358 THR CB OG1 sing N N 359 THR CB CG2 sing N N 360 THR CB HB sing N N 361 THR OG1 HG1 sing N N 362 THR CG2 HG21 sing N N 363 THR CG2 HG22 sing N N 364 THR CG2 HG23 sing N N 365 THR OXT HXT sing N N 366 TRP N CA sing N N 367 TRP N H sing N N 368 TRP N H2 sing N N 369 TRP CA C sing N N 370 TRP CA CB sing N N 371 TRP CA HA sing N N 372 TRP C O doub N N 373 TRP C OXT sing N N 374 TRP CB CG sing N N 375 TRP CB HB2 sing N N 376 TRP CB HB3 sing N N 377 TRP CG CD1 doub Y N 378 TRP CG CD2 sing Y N 379 TRP CD1 NE1 sing Y N 380 TRP CD1 HD1 sing N N 381 TRP CD2 CE2 doub Y N 382 TRP CD2 CE3 sing Y N 383 TRP NE1 CE2 sing Y N 384 TRP NE1 HE1 sing N N 385 TRP CE2 CZ2 sing Y N 386 TRP CE3 CZ3 doub Y N 387 TRP CE3 HE3 sing N N 388 TRP CZ2 CH2 doub Y N 389 TRP CZ2 HZ2 sing N N 390 TRP CZ3 CH2 sing Y N 391 TRP CZ3 HZ3 sing N N 392 TRP CH2 HH2 sing N N 393 TRP OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 VAL N CA sing N N 419 VAL N H sing N N 420 VAL N H2 sing N N 421 VAL CA C sing N N 422 VAL CA CB sing N N 423 VAL CA HA sing N N 424 VAL C O doub N N 425 VAL C OXT sing N N 426 VAL CB CG1 sing N N 427 VAL CB CG2 sing N N 428 VAL CB HB sing N N 429 VAL CG1 HG11 sing N N 430 VAL CG1 HG12 sing N N 431 VAL CG1 HG13 sing N N 432 VAL CG2 HG21 sing N N 433 VAL CG2 HG22 sing N N 434 VAL CG2 HG23 sing N N 435 VAL OXT HXT sing N N 436 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2UVL _pdbx_initial_refinement_model.details 'pdb code 2UVL' #