HEADER IMMUNE SYSTEM 07-DEC-11 3UZV TITLE CRYSTAL STRUCTURE OF THE DENGUE VIRUS SEROTYPE 2 ENVELOPE PROTEIN TITLE 2 DOMAIN III IN COMPLEX WITH THE VARIABLE DOMAINS OF MAB 4E11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III (UNP RESIDUES 576-680); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ANTI-DENGUE MAB 4E11; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: SINGLE CHAIN VARIABLE FRAGMENT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 3 ORGANISM_COMMON: DENV-2; SOURCE 4 ORGANISM_TAXID: 11064; SOURCE 5 STRAIN: JAMAICA/1409/1983; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: HB2151; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGEMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PLB1 KEYWDS DENGUE ANTIBODY NEUTRALIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.B.COCKBURN,M.E.NAVARRO SANCHEZ,N.FRETES,A.URVOAS,I.STAROPOLI, AUTHOR 2 C.M.KIKUTI,L.L.COFFEY,F.ARENZANA SEISDEDOS,H.BEDOUELLE,F.A.REY REVDAT 3 13-SEP-23 3UZV 1 REMARK SEQADV REVDAT 2 18-APR-12 3UZV 1 JRNL REVDAT 1 22-FEB-12 3UZV 0 JRNL AUTH J.J.COCKBURN,M.E.NAVARRO SANCHEZ,N.FRETES,A.URVOAS, JRNL AUTH 2 I.STAROPOLI,C.M.KIKUTI,L.L.COFFEY,F.ARENZANA SEISDEDOS, JRNL AUTH 3 H.BEDOUELLE,F.A.REY JRNL TITL MECHANISM OF DENGUE VIRUS BROAD CROSS-NEUTRALIZATION BY A JRNL TITL 2 MONOCLONAL ANTIBODY. JRNL REF STRUCTURE V. 20 303 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22285214 JRNL DOI 10.1016/J.STR.2012.01.001 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 22880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3002 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2189 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2857 REMARK 3 BIN R VALUE (WORKING SET) : 0.2165 REMARK 3 BIN FREE R VALUE : 0.2696 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.83 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2524 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.24450 REMARK 3 B22 (A**2) : -5.24450 REMARK 3 B33 (A**2) : 10.48910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.202 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2601 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3526 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 889 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 377 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2601 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 344 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2978 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.58 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|2 - B|117 } REMARK 3 ORIGIN FOR THE GROUP (A): -25.9842 9.8857 -39.7809 REMARK 3 T TENSOR REMARK 3 T11: -0.0696 T22: -0.0497 REMARK 3 T33: -0.0560 T12: 0.0587 REMARK 3 T13: -0.0439 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 3.0221 L22: 1.3062 REMARK 3 L33: 5.1181 L12: 0.2086 REMARK 3 L13: 2.0420 L23: -0.4962 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.0197 S13: 0.1470 REMARK 3 S21: -0.0225 S22: -0.0002 S23: 0.1436 REMARK 3 S31: -0.0396 S32: -0.3113 S33: -0.0380 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|132 - B|244 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.7853 -2.9819 -34.2339 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: -0.0137 REMARK 3 T33: -0.0951 T12: 0.1506 REMARK 3 T13: -0.1118 T23: -0.1023 REMARK 3 L TENSOR REMARK 3 L11: 1.6453 L22: 2.0153 REMARK 3 L33: 2.8901 L12: -0.1638 REMARK 3 L13: -0.6963 L23: 0.7037 REMARK 3 S TENSOR REMARK 3 S11: 0.1822 S12: 0.0585 S13: -0.2671 REMARK 3 S21: -0.0062 S22: -0.0174 S23: -0.1513 REMARK 3 S31: 0.5442 S32: 0.5358 S33: -0.1648 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|295 - A|342 A|346 - A|394} REMARK 3 ORIGIN FOR THE GROUP (A): -20.6672 4.6117 -10.7360 REMARK 3 T TENSOR REMARK 3 T11: -0.0432 T22: -0.0082 REMARK 3 T33: -0.1394 T12: -0.1459 REMARK 3 T13: 0.0066 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 3.5203 L22: 3.1863 REMARK 3 L33: 3.9672 L12: 1.3317 REMARK 3 L13: -1.7469 L23: 0.3528 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: -0.5241 S13: -0.2415 REMARK 3 S21: 0.1537 S22: -0.0225 S23: 0.1193 REMARK 3 S31: 0.4079 S32: 0.1691 S33: -0.0966 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0721 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UZQ, 1OAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JBS CLASSIC 8 SOLUTION D1 (30% REMARK 280 ETHANOL, 12% PEG 6K AND 0.1M SODIUM ACETATE) DILUTED 70% IN H20, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.73000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.23000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.86500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.23000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.59500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.23000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.86500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.23000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.59500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 343 REMARK 465 LYS A 344 REMARK 465 ARG A 345 REMARK 465 GLY A 395 REMARK 465 SER A 396 REMARK 465 SER A 397 REMARK 465 ILE A 398 REMARK 465 GLY A 399 REMARK 465 GLN A 400 REMARK 465 LEU A 401 REMARK 465 GLU A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 GLU B 1 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 GLY B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 PRO B 245 REMARK 465 LEU B 246 REMARK 465 GLU B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 317 33.40 -99.66 REMARK 500 LYS B 68 -55.21 -128.84 REMARK 500 SER B 86 71.05 39.53 REMARK 500 ALA B 187 -39.87 65.04 REMARK 500 ARG B 204 -91.01 57.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UZQ RELATED DB: PDB REMARK 900 RELATED ID: 3UYP RELATED DB: PDB REMARK 900 RELATED ID: 3UZE RELATED DB: PDB DBREF 3UZV A 296 400 UNP P07564 POLG_DEN2J 576 680 DBREF 3UZV B 1 253 PDB 3UZV 3UZV 1 253 SEQADV 3UZV MET A 295 UNP P07564 INITIATING METHIONINE SEQADV 3UZV LEU A 401 UNP P07564 EXPRESSION TAG SEQADV 3UZV GLU A 402 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 403 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 404 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 405 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 406 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 407 UNP P07564 EXPRESSION TAG SEQADV 3UZV HIS A 408 UNP P07564 EXPRESSION TAG SEQRES 1 A 114 MET GLY MET SER TYR SER MET CYS THR GLY LYS PHE LYS SEQRES 2 A 114 ILE VAL LYS GLU ILE ALA GLU THR GLN HIS GLY THR ILE SEQRES 3 A 114 VAL ILE ARG VAL GLN TYR GLU GLY ASP GLY SER PRO CYS SEQRES 4 A 114 LYS ILE PRO PHE GLU ILE MET ASP LEU GLU LYS ARG HIS SEQRES 5 A 114 VAL LEU GLY ARG LEU ILE THR VAL ASN PRO ILE VAL THR SEQRES 6 A 114 GLU LYS ASP SER PRO VAL ASN ILE GLU ALA GLU PRO PRO SEQRES 7 A 114 PHE GLY ASP SER TYR ILE ILE ILE GLY VAL GLU PRO GLY SEQRES 8 A 114 GLN LEU LYS LEU ASN TRP PHE LYS LYS GLY SER SER ILE SEQRES 9 A 114 GLY GLN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 253 GLU VAL LYS LEU LEU GLU GLN SER GLY ALA GLU LEU VAL SEQRES 2 B 253 LYS PRO GLY ALA SER VAL ARG LEU SER CYS THR ALA SER SEQRES 3 B 253 GLY PHE ASN ILE LYS ASP THR TYR MET SER TRP VAL LYS SEQRES 4 B 253 GLN ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE SEQRES 5 B 253 ASP PRO ALA ASN GLY ASP THR LYS TYR ASP PRO LYS PHE SEQRES 6 B 253 GLN GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN SEQRES 7 B 253 THR ALA TYR LEU HIS LEU SER SER LEU THR SER GLY ASP SEQRES 8 B 253 THR ALA VAL TYR TYR CYS SER ARG GLY TRP GLU GLY PHE SEQRES 9 B 253 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA SEQRES 10 B 253 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 11 B 253 GLY SER GLU LEU VAL MET THR GLN THR PRO ALA SER LEU SEQRES 12 B 253 ALA VAL SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG SEQRES 13 B 253 ALA SER GLU ASN VAL ASP ARG TYR GLY ASN SER PHE MET SEQRES 14 B 253 HIS TRP TYR GLN GLN LYS ALA GLY GLN PRO PRO LYS LEU SEQRES 15 B 253 LEU ILE TYR ARG ALA SER ASN LEU GLU SER GLY ILE PRO SEQRES 16 B 253 ALA ARG PHE SER GLY SER GLY SER ARG THR ASP PHE THR SEQRES 17 B 253 LEU THR ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR SEQRES 18 B 253 TYR PHE CYS GLN ARG SER ASN GLU VAL PRO TRP THR PHE SEQRES 19 B 253 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG PRO LEU GLU SEQRES 20 B 253 HIS HIS HIS HIS HIS HIS HET EOH B 254 3 HETNAM EOH ETHANOL FORMUL 3 EOH C2 H6 O FORMUL 4 HOH *112(H2 O) HELIX 1 1 ASN B 29 THR B 33 5 5 HELIX 2 2 PRO B 63 GLN B 66 5 4 HELIX 3 3 THR B 88 THR B 92 5 5 HELIX 4 4 GLU B 215 VAL B 219 5 5 SHEET 1 A 3 PHE A 306 ILE A 308 0 SHEET 2 A 3 ILE A 320 TYR A 326 -1 O GLN A 325 N LYS A 307 SHEET 3 A 3 ALA A 313 GLU A 314 -1 N ALA A 313 O VAL A 321 SHEET 1 B 4 PHE A 306 ILE A 308 0 SHEET 2 B 4 ILE A 320 TYR A 326 -1 O GLN A 325 N LYS A 307 SHEET 3 B 4 VAL A 365 GLU A 370 -1 O VAL A 365 N VAL A 324 SHEET 4 B 4 ARG A 350 LEU A 351 -1 N ARG A 350 O GLU A 370 SHEET 1 C 2 CYS A 333 LYS A 334 0 SHEET 2 C 2 ILE A 357 VAL A 358 -1 O VAL A 358 N CYS A 333 SHEET 1 D 3 PHE A 337 MET A 340 0 SHEET 2 D 3 GLY A 374 ILE A 380 -1 O ILE A 379 N GLU A 338 SHEET 3 D 3 LEU A 387 LYS A 393 -1 O TRP A 391 N SER A 376 SHEET 1 E 4 LEU B 4 GLN B 7 0 SHEET 2 E 4 VAL B 19 SER B 26 -1 O THR B 24 N GLU B 6 SHEET 3 E 4 THR B 79 LEU B 84 -1 O LEU B 84 N VAL B 19 SHEET 4 E 4 ALA B 69 ASP B 74 -1 N ASP B 74 O THR B 79 SHEET 1 F 6 GLU B 11 VAL B 13 0 SHEET 2 F 6 THR B 111 VAL B 115 1 O THR B 114 N GLU B 11 SHEET 3 F 6 ALA B 93 ARG B 99 -1 N TYR B 95 O THR B 111 SHEET 4 F 6 MET B 35 GLN B 40 -1 N SER B 36 O SER B 98 SHEET 5 F 6 GLU B 47 ILE B 52 -1 O GLU B 47 N LYS B 39 SHEET 6 F 6 THR B 59 TYR B 61 -1 O LYS B 60 N ARG B 51 SHEET 1 G 4 GLU B 11 VAL B 13 0 SHEET 2 G 4 THR B 111 VAL B 115 1 O THR B 114 N GLU B 11 SHEET 3 G 4 ALA B 93 ARG B 99 -1 N TYR B 95 O THR B 111 SHEET 4 G 4 TYR B 106 TRP B 107 -1 O TYR B 106 N ARG B 99 SHEET 1 H 4 MET B 136 THR B 139 0 SHEET 2 H 4 ALA B 151 ALA B 157 -1 O ARG B 156 N THR B 137 SHEET 3 H 4 ASP B 206 ILE B 211 -1 O PHE B 207 N CYS B 155 SHEET 4 H 4 PHE B 198 SER B 203 -1 N SER B 199 O THR B 210 SHEET 1 I 6 SER B 142 VAL B 145 0 SHEET 2 I 6 THR B 238 ILE B 242 1 O GLU B 241 N LEU B 143 SHEET 3 I 6 ALA B 220 ARG B 226 -1 N ALA B 220 O LEU B 240 SHEET 4 I 6 MET B 169 GLN B 174 -1 N HIS B 170 O GLN B 225 SHEET 5 I 6 LYS B 181 TYR B 185 -1 O LEU B 183 N TRP B 171 SHEET 6 I 6 ASN B 189 LEU B 190 -1 O ASN B 189 N TYR B 185 SHEET 1 J 2 ASP B 162 ARG B 163 0 SHEET 2 J 2 ASN B 166 SER B 167 -1 O ASN B 166 N ARG B 163 SSBOND 1 CYS A 302 CYS A 333 1555 1555 2.04 SSBOND 2 CYS B 23 CYS B 97 1555 1555 2.03 SSBOND 3 CYS B 155 CYS B 224 1555 1555 2.04 CISPEP 1 SER A 331 PRO A 332 0 4.09 CISPEP 2 GLU A 383 PRO A 384 0 4.52 CISPEP 3 THR B 139 PRO B 140 0 -2.89 CISPEP 4 ASN B 212 PRO B 213 0 0.38 CISPEP 5 VAL B 230 PRO B 231 0 3.93 SITE 1 AC1 7 ILE A 308 VAL A 309 GLN A 325 THR B 33 SITE 2 AC1 7 GLY B 100 TRP B 101 GLU B 102 CRYST1 60.460 60.460 207.460 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004820 0.00000