data_3V3B # _entry.id 3V3B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3V3B pdb_00003v3b 10.2210/pdb3v3b/pdb RCSB RCSB069541 ? ? WWPDB D_1000069541 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YCR _pdbx_database_related.details 'Mdm2 with a wt p53 peptide' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3V3B _pdbx_database_status.recvd_initial_deposition_date 2011-12-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baek, S.' 1 'Kutchukian, P.S.' 2 'Verdine, G.L.' 3 'Huber, R.' 4 'Holak, T.A.' 5 'Ki Won, L.' 6 'Popowicz, G.M.' 7 # _citation.id primary _citation.title 'Structure of the stapled p53 peptide bound to Mdm2.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 103 _citation.page_last 106 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22148351 _citation.pdbx_database_id_DOI 10.1021/ja2090367 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baek, S.' 1 ? primary 'Kutchukian, P.S.' 2 ? primary 'Verdine, G.L.' 3 ? primary 'Huber, R.' 4 ? primary 'Holak, T.A.' 5 ? primary 'Lee, K.W.' 6 ? primary 'Popowicz, G.M.' 7 ? # _cell.entry_id 3V3B _cell.length_a 45.400 _cell.length_b 42.410 _cell.length_c 50.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.86 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3V3B _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase Mdm2' 10403.345 2 6.3.2.- ? ? ? 2 polymer syn 'SAH-p53-8 stapled-peptide' 2073.416 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 8 ? ? ? ? 4 water nat water 18.015 146 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTM IYRNLVVV ; ;MQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTM IYRNLVVV ; A,B ? 2 'polypeptide(L)' no yes 'QSQQTF(0EH)NLWRLL(MK8)QN' QSQQTFXNLWRLLLQN C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 GLU n 1 4 THR n 1 5 LEU n 1 6 VAL n 1 7 ARG n 1 8 PRO n 1 9 LYS n 1 10 PRO n 1 11 LEU n 1 12 LEU n 1 13 LEU n 1 14 LYS n 1 15 LEU n 1 16 LEU n 1 17 LYS n 1 18 SER n 1 19 VAL n 1 20 GLY n 1 21 ALA n 1 22 GLN n 1 23 LYS n 1 24 ASP n 1 25 THR n 1 26 TYR n 1 27 THR n 1 28 MET n 1 29 LYS n 1 30 GLU n 1 31 VAL n 1 32 LEU n 1 33 PHE n 1 34 TYR n 1 35 LEU n 1 36 GLY n 1 37 GLN n 1 38 TYR n 1 39 ILE n 1 40 MET n 1 41 THR n 1 42 LYS n 1 43 ARG n 1 44 LEU n 1 45 TYR n 1 46 ASP n 1 47 GLU n 1 48 LYS n 1 49 GLN n 1 50 GLN n 1 51 HIS n 1 52 ILE n 1 53 VAL n 1 54 TYR n 1 55 CYS n 1 56 SER n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 LEU n 1 61 GLY n 1 62 ASP n 1 63 LEU n 1 64 PHE n 1 65 GLY n 1 66 VAL n 1 67 PRO n 1 68 SER n 1 69 PHE n 1 70 SER n 1 71 VAL n 1 72 LYS n 1 73 GLU n 1 74 HIS n 1 75 ARG n 1 76 LYS n 1 77 ILE n 1 78 TYR n 1 79 THR n 1 80 MET n 1 81 ILE n 1 82 TYR n 1 83 ARG n 1 84 ASN n 1 85 LEU n 1 86 VAL n 1 87 VAL n 1 88 VAL n 2 1 GLN n 2 2 SER n 2 3 GLN n 2 4 GLN n 2 5 THR n 2 6 PHE n 2 7 0EH n 2 8 ASN n 2 9 LEU n 2 10 TRP n 2 11 ARG n 2 12 LEU n 2 13 LEU n 2 14 MK8 n 2 15 GLN n 2 16 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MDM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-20 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic cyclic peptide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MDM2_HUMAN Q00987 1 ;QETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI YRNLVVV ; 24 ? 2 PDB 3V3B 3V3B 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3V3B A 2 ? 88 ? Q00987 24 ? 110 ? 24 110 2 1 3V3B B 2 ? 88 ? Q00987 24 ? 110 ? 24 110 3 2 3V3B C 1 ? 16 ? 3V3B 14 ? 29 ? 14 29 4 2 3V3B D 1 ? 16 ? 3V3B 14 ? 29 ? 14 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3V3B MET A 1 ? UNP Q00987 ? ? 'expression tag' 23 1 2 3V3B MET B 1 ? UNP Q00987 ? ? 'expression tag' 23 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0EH 'D-peptide linking' . '(2R)-2-amino-2-methylnonanoic acid' ? 'C10 H21 N O2' 187.279 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MK8 'L-peptide linking' n 2-methyl-L-norleucine ? 'C7 H15 N O2' 145.199 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3V3B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 36.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.75 _exptl_crystal_grow.pdbx_details '100 mM Na-acetate, 2.5M NaCl, pH 4.75, VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-02-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3V3B _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 13254 _reflns.number_all 13316 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3V3B _refine.ls_number_reflns_obs 11550 _refine.ls_number_reflns_all 13254 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 92.35 _refine.ls_R_factor_obs 0.16827 _refine.ls_R_factor_all 0.1683 _refine.ls_R_factor_R_work 0.16582 _refine.ls_R_factor_R_free 0.21647 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 603 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 13.422 _refine.aniso_B[1][1] 0.34 _refine.aniso_B[2][2] -0.66 _refine.aniso_B[3][3] 0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.73 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.216 _refine.pdbx_overall_ESU_R_Free 0.176 _refine.overall_SU_ML 0.108 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.796 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1603 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 1757 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.022 ? 1632 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.003 0.020 ? 1121 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.050 1.996 ? 2180 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.899 3.010 ? 2667 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.363 5.000 ? 186 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 40.832 24.063 ? 64 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.770 15.000 ? 286 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 25.653 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.067 0.200 ? 256 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 1673 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 314 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.565 1.500 ? 961 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.116 1.500 ? 390 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.001 2.000 ? 1544 ? 'X-RAY DIFFRACTION' r_scbond_it 1.602 3.000 ? 671 ? 'X-RAY DIFFRACTION' r_scangle_it 2.580 4.500 ? 636 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.number_reflns_R_work 750 _refine_ls_shell.R_factor_R_work 0.174 _refine_ls_shell.percent_reflns_obs 83.21 _refine_ls_shell.R_factor_R_free 0.231 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3V3B _struct.title 'Structure of the Stapled p53 Peptide Bound to Mdm2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3V3B _struct_keywords.pdbx_keywords 'ligase/ligase inhibitor' _struct_keywords.text 'oncoprotein, cell cycle, DNA repair, cancer, p53-derived peptide, aliphatic staple, ligase-ligase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 9 ? VAL A 19 ? LYS A 31 VAL A 41 1 ? 11 HELX_P HELX_P2 2 MET A 28 ? LYS A 42 ? MET A 50 LYS A 64 1 ? 15 HELX_P HELX_P3 3 ASP A 58 ? GLY A 65 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P4 4 GLU A 73 ? ARG A 83 ? GLU A 95 ARG A 105 1 ? 11 HELX_P HELX_P5 5 LYS B 9 ? VAL B 19 ? LYS B 31 VAL B 41 1 ? 11 HELX_P HELX_P6 6 MET B 28 ? LYS B 42 ? MET B 50 LYS B 64 1 ? 15 HELX_P HELX_P7 7 ASP B 58 ? GLY B 65 ? ASP B 80 GLY B 87 1 ? 8 HELX_P HELX_P8 8 GLU B 73 ? ASN B 84 ? GLU B 95 ASN B 106 1 ? 12 HELX_P HELX_P9 9 THR C 5 ? PHE C 6 ? THR C 18 PHE C 19 5 ? 2 HELX_P HELX_P10 10 ASN C 8 ? ASN C 8 ? ASN C 21 ASN C 21 5 ? 1 HELX_P HELX_P11 11 LEU C 9 ? MK8 C 14 ? LEU C 22 MK8 C 27 1 ? 6 HELX_P HELX_P12 12 THR D 5 ? PHE D 6 ? THR D 18 PHE D 19 5 ? 2 HELX_P HELX_P13 13 ASN D 8 ? ASN D 8 ? ASN D 21 ASN D 21 5 ? 1 HELX_P HELX_P14 14 LEU D 9 ? GLN D 15 ? LEU D 22 GLN D 28 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C PHE 6 C ? ? ? 1_555 C 0EH 7 N ? ? C PHE 19 C 0EH 20 1_555 ? ? ? ? ? ? ? 1.298 ? ? covale2 covale both ? C 0EH 7 C ? ? ? 1_555 C ASN 8 N ? ? C 0EH 20 C ASN 21 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale3 covale none ? C 0EH 7 CAT ? ? ? 1_555 C MK8 14 CE ? ? C 0EH 20 C MK8 27 1_555 ? ? ? ? ? ? ? 1.387 doub ? covale4 covale both ? C LEU 13 C ? ? ? 1_555 C MK8 14 N ? ? C LEU 26 C MK8 27 1_555 ? ? ? ? ? ? ? 1.276 ? ? covale5 covale both ? D PHE 6 C ? ? ? 1_555 D 0EH 7 N ? ? D PHE 19 D 0EH 20 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale6 covale both ? D 0EH 7 C ? ? ? 1_555 D ASN 8 N ? ? D 0EH 20 D ASN 21 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale7 covale none ? D 0EH 7 CAT ? ? ? 1_555 D MK8 14 CE ? ? D 0EH 20 D MK8 27 1_555 ? ? ? ? ? ? ? 1.382 doub ? covale8 covale both ? D LEU 13 C ? ? ? 1_555 D MK8 14 N ? ? D LEU 26 D MK8 27 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale9 covale both ? D MK8 14 C ? ? ? 1_555 D GLN 15 N ? ? D MK8 27 D GLN 28 1_555 ? ? ? ? ? ? ? 1.365 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 26 ? THR A 27 ? TYR A 48 THR A 49 A 2 LEU A 5 ? PRO A 8 ? LEU A 27 PRO A 30 A 3 LEU A 85 ? VAL A 87 ? LEU A 107 VAL A 109 B 1 ILE A 52 ? TYR A 54 ? ILE A 74 TYR A 76 B 2 SER A 68 ? SER A 70 ? SER A 90 SER A 92 C 1 TYR B 26 ? THR B 27 ? TYR B 48 THR B 49 C 2 LEU B 5 ? PRO B 8 ? LEU B 27 PRO B 30 C 3 LEU B 85 ? VAL B 87 ? LEU B 107 VAL B 109 D 1 ILE B 52 ? TYR B 54 ? ILE B 74 TYR B 76 D 2 SER B 68 ? SER B 70 ? SER B 90 SER B 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 26 ? O TYR A 48 N VAL A 6 ? N VAL A 28 A 2 3 N ARG A 7 ? N ARG A 29 O VAL A 86 ? O VAL A 108 B 1 2 N VAL A 53 ? N VAL A 75 O PHE A 69 ? O PHE A 91 C 1 2 O TYR B 26 ? O TYR B 48 N VAL B 6 ? N VAL B 28 C 2 3 N ARG B 7 ? N ARG B 29 O VAL B 86 ? O VAL B 108 D 1 2 N VAL B 53 ? N VAL B 75 O PHE B 69 ? O PHE B 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 2' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 3' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 4' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 5' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 6' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL B 1' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL B 7' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL B 8' AC9 Software ? ? ? ? 12 'BINDING SITE FOR CHAIN C OF SAH-P53-8 STAPLED-PEPTIDE' BC1 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN D OF SAH-P53-8 STAPLED-PEPTIDE' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 10 ? PRO A 32 . ? 1_555 ? 2 AC1 4 LEU A 11 ? LEU A 33 . ? 1_555 ? 3 AC1 4 PRO B 10 ? PRO B 32 . ? 1_555 ? 4 AC1 4 LEU B 11 ? LEU B 33 . ? 1_555 ? 5 AC2 4 GLU A 3 ? GLU A 25 . ? 1_555 ? 6 AC2 4 THR A 4 ? THR A 26 . ? 1_555 ? 7 AC2 4 MET A 28 ? MET A 50 . ? 1_555 ? 8 AC2 4 LYS A 29 ? LYS A 51 . ? 1_555 ? 9 AC3 1 VAL A 87 ? VAL A 109 . ? 1_555 ? 10 AC4 3 GLU A 73 ? GLU A 95 . ? 1_555 ? 11 AC4 3 ARG A 75 ? ARG A 97 . ? 1_555 ? 12 AC4 3 LYS A 76 ? LYS A 98 . ? 1_555 ? 13 AC5 3 LYS A 42 ? LYS A 64 . ? 1_555 ? 14 AC5 3 ASP A 58 ? ASP A 80 . ? 1_555 ? 15 AC5 3 LEU A 59 ? LEU A 81 . ? 1_555 ? 16 AC6 1 SER B 70 ? SER B 92 . ? 1_555 ? 17 AC7 1 GLU B 47 ? GLU B 69 . ? 1_555 ? 18 AC8 3 LYS B 42 ? LYS B 64 . ? 1_555 ? 19 AC8 3 ASP B 58 ? ASP B 80 . ? 1_555 ? 20 AC8 3 LEU B 59 ? LEU B 81 . ? 1_555 ? 21 AC9 12 GLU A 3 ? GLU A 25 . ? 1_556 ? 22 AC9 12 THR A 27 ? THR A 49 . ? 1_556 ? 23 AC9 12 LEU B 32 ? LEU B 54 . ? 1_555 ? 24 AC9 12 PHE B 33 ? PHE B 55 . ? 1_555 ? 25 AC9 12 LEU B 35 ? LEU B 57 . ? 1_555 ? 26 AC9 12 GLY B 36 ? GLY B 58 . ? 1_555 ? 27 AC9 12 GLN B 37 ? GLN B 59 . ? 1_555 ? 28 AC9 12 ILE B 39 ? ILE B 61 . ? 1_555 ? 29 AC9 12 GLN B 50 ? GLN B 72 . ? 1_555 ? 30 AC9 12 HIS B 51 ? HIS B 73 . ? 1_555 ? 31 AC9 12 VAL B 71 ? VAL B 93 . ? 1_555 ? 32 AC9 12 HIS B 74 ? HIS B 96 . ? 1_555 ? 33 BC1 9 LEU A 32 ? LEU A 54 . ? 1_555 ? 34 BC1 9 GLY A 36 ? GLY A 58 . ? 1_555 ? 35 BC1 9 ILE A 39 ? ILE A 61 . ? 1_555 ? 36 BC1 9 TYR A 45 ? TYR A 67 . ? 1_555 ? 37 BC1 9 GLN A 50 ? GLN A 72 . ? 1_555 ? 38 BC1 9 HIS A 51 ? HIS A 73 . ? 1_555 ? 39 BC1 9 VAL A 71 ? VAL A 93 . ? 1_555 ? 40 BC1 9 TYR A 78 ? TYR A 100 . ? 1_555 ? 41 BC1 9 HOH P . ? HOH D 110 . ? 1_555 ? # _database_PDB_matrix.entry_id 3V3B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3V3B _atom_sites.fract_transf_matrix[1][1] 0.022026 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000331 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023579 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019804 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 23 ? ? ? A . n A 1 2 GLN 2 24 24 GLN GLN A . n A 1 3 GLU 3 25 25 GLU GLU A . n A 1 4 THR 4 26 26 THR THR A . n A 1 5 LEU 5 27 27 LEU LEU A . n A 1 6 VAL 6 28 28 VAL VAL A . n A 1 7 ARG 7 29 29 ARG ARG A . n A 1 8 PRO 8 30 30 PRO PRO A . n A 1 9 LYS 9 31 31 LYS LYS A . n A 1 10 PRO 10 32 32 PRO PRO A . n A 1 11 LEU 11 33 33 LEU LEU A . n A 1 12 LEU 12 34 34 LEU LEU A . n A 1 13 LEU 13 35 35 LEU LEU A . n A 1 14 LYS 14 36 36 LYS LYS A . n A 1 15 LEU 15 37 37 LEU LEU A . n A 1 16 LEU 16 38 38 LEU LEU A . n A 1 17 LYS 17 39 39 LYS LYS A . n A 1 18 SER 18 40 40 SER SER A . n A 1 19 VAL 19 41 41 VAL VAL A . n A 1 20 GLY 20 42 42 GLY GLY A . n A 1 21 ALA 21 43 43 ALA ALA A . n A 1 22 GLN 22 44 44 GLN GLN A . n A 1 23 LYS 23 45 45 LYS LYS A . n A 1 24 ASP 24 46 46 ASP ASP A . n A 1 25 THR 25 47 47 THR THR A . n A 1 26 TYR 26 48 48 TYR TYR A . n A 1 27 THR 27 49 49 THR THR A . n A 1 28 MET 28 50 50 MET MET A . n A 1 29 LYS 29 51 51 LYS LYS A . n A 1 30 GLU 30 52 52 GLU GLU A . n A 1 31 VAL 31 53 53 VAL VAL A . n A 1 32 LEU 32 54 54 LEU LEU A . n A 1 33 PHE 33 55 55 PHE PHE A . n A 1 34 TYR 34 56 56 TYR TYR A . n A 1 35 LEU 35 57 57 LEU LEU A . n A 1 36 GLY 36 58 58 GLY GLY A . n A 1 37 GLN 37 59 59 GLN GLN A . n A 1 38 TYR 38 60 60 TYR TYR A . n A 1 39 ILE 39 61 61 ILE ILE A . n A 1 40 MET 40 62 62 MET MET A . n A 1 41 THR 41 63 63 THR THR A . n A 1 42 LYS 42 64 64 LYS LYS A . n A 1 43 ARG 43 65 65 ARG ARG A . n A 1 44 LEU 44 66 66 LEU LEU A . n A 1 45 TYR 45 67 67 TYR TYR A . n A 1 46 ASP 46 68 68 ASP ASP A . n A 1 47 GLU 47 69 69 GLU GLU A . n A 1 48 LYS 48 70 70 LYS LYS A . n A 1 49 GLN 49 71 71 GLN GLN A . n A 1 50 GLN 50 72 72 GLN GLN A . n A 1 51 HIS 51 73 73 HIS HIS A . n A 1 52 ILE 52 74 74 ILE ILE A . n A 1 53 VAL 53 75 75 VAL VAL A . n A 1 54 TYR 54 76 76 TYR TYR A . n A 1 55 CYS 55 77 77 CYS CYS A . n A 1 56 SER 56 78 78 SER SER A . n A 1 57 ASN 57 79 79 ASN ASN A . n A 1 58 ASP 58 80 80 ASP ASP A . n A 1 59 LEU 59 81 81 LEU LEU A . n A 1 60 LEU 60 82 82 LEU LEU A . n A 1 61 GLY 61 83 83 GLY GLY A . n A 1 62 ASP 62 84 84 ASP ASP A . n A 1 63 LEU 63 85 85 LEU LEU A . n A 1 64 PHE 64 86 86 PHE PHE A . n A 1 65 GLY 65 87 87 GLY GLY A . n A 1 66 VAL 66 88 88 VAL VAL A . n A 1 67 PRO 67 89 89 PRO PRO A . n A 1 68 SER 68 90 90 SER SER A . n A 1 69 PHE 69 91 91 PHE PHE A . n A 1 70 SER 70 92 92 SER SER A . n A 1 71 VAL 71 93 93 VAL VAL A . n A 1 72 LYS 72 94 94 LYS LYS A . n A 1 73 GLU 73 95 95 GLU GLU A . n A 1 74 HIS 74 96 96 HIS HIS A . n A 1 75 ARG 75 97 97 ARG ARG A . n A 1 76 LYS 76 98 98 LYS LYS A . n A 1 77 ILE 77 99 99 ILE ILE A . n A 1 78 TYR 78 100 100 TYR TYR A . n A 1 79 THR 79 101 101 THR THR A . n A 1 80 MET 80 102 102 MET MET A . n A 1 81 ILE 81 103 103 ILE ILE A . n A 1 82 TYR 82 104 104 TYR TYR A . n A 1 83 ARG 83 105 105 ARG ARG A . n A 1 84 ASN 84 106 106 ASN ASN A . n A 1 85 LEU 85 107 107 LEU LEU A . n A 1 86 VAL 86 108 108 VAL VAL A . n A 1 87 VAL 87 109 109 VAL VAL A . n A 1 88 VAL 88 110 110 VAL VAL A . n B 1 1 MET 1 23 ? ? ? B . n B 1 2 GLN 2 24 24 GLN GLN B . n B 1 3 GLU 3 25 25 GLU GLU B . n B 1 4 THR 4 26 26 THR THR B . n B 1 5 LEU 5 27 27 LEU LEU B . n B 1 6 VAL 6 28 28 VAL VAL B . n B 1 7 ARG 7 29 29 ARG ARG B . n B 1 8 PRO 8 30 30 PRO PRO B . n B 1 9 LYS 9 31 31 LYS LYS B . n B 1 10 PRO 10 32 32 PRO PRO B . n B 1 11 LEU 11 33 33 LEU LEU B . n B 1 12 LEU 12 34 34 LEU LEU B . n B 1 13 LEU 13 35 35 LEU LEU B . n B 1 14 LYS 14 36 36 LYS LYS B . n B 1 15 LEU 15 37 37 LEU LEU B . n B 1 16 LEU 16 38 38 LEU LEU B . n B 1 17 LYS 17 39 39 LYS LYS B . n B 1 18 SER 18 40 40 SER SER B . n B 1 19 VAL 19 41 41 VAL VAL B . n B 1 20 GLY 20 42 42 GLY GLY B . n B 1 21 ALA 21 43 43 ALA ALA B . n B 1 22 GLN 22 44 44 GLN GLN B . n B 1 23 LYS 23 45 45 LYS LYS B . n B 1 24 ASP 24 46 46 ASP ASP B . n B 1 25 THR 25 47 47 THR THR B . n B 1 26 TYR 26 48 48 TYR TYR B . n B 1 27 THR 27 49 49 THR THR B . n B 1 28 MET 28 50 50 MET MET B . n B 1 29 LYS 29 51 51 LYS LYS B . n B 1 30 GLU 30 52 52 GLU GLU B . n B 1 31 VAL 31 53 53 VAL VAL B . n B 1 32 LEU 32 54 54 LEU LEU B . n B 1 33 PHE 33 55 55 PHE PHE B . n B 1 34 TYR 34 56 56 TYR TYR B . n B 1 35 LEU 35 57 57 LEU LEU B . n B 1 36 GLY 36 58 58 GLY GLY B . n B 1 37 GLN 37 59 59 GLN GLN B . n B 1 38 TYR 38 60 60 TYR TYR B . n B 1 39 ILE 39 61 61 ILE ILE B . n B 1 40 MET 40 62 62 MET MET B . n B 1 41 THR 41 63 63 THR THR B . n B 1 42 LYS 42 64 64 LYS LYS B . n B 1 43 ARG 43 65 65 ARG ARG B . n B 1 44 LEU 44 66 66 LEU LEU B . n B 1 45 TYR 45 67 67 TYR TYR B . n B 1 46 ASP 46 68 68 ASP ASP B . n B 1 47 GLU 47 69 69 GLU GLU B . n B 1 48 LYS 48 70 70 LYS LYS B . n B 1 49 GLN 49 71 71 GLN GLN B . n B 1 50 GLN 50 72 72 GLN GLN B . n B 1 51 HIS 51 73 73 HIS HIS B . n B 1 52 ILE 52 74 74 ILE ILE B . n B 1 53 VAL 53 75 75 VAL VAL B . n B 1 54 TYR 54 76 76 TYR TYR B . n B 1 55 CYS 55 77 77 CYS CYS B . n B 1 56 SER 56 78 78 SER SER B . n B 1 57 ASN 57 79 79 ASN ASN B . n B 1 58 ASP 58 80 80 ASP ASP B . n B 1 59 LEU 59 81 81 LEU LEU B . n B 1 60 LEU 60 82 82 LEU LEU B . n B 1 61 GLY 61 83 83 GLY GLY B . n B 1 62 ASP 62 84 84 ASP ASP B . n B 1 63 LEU 63 85 85 LEU LEU B . n B 1 64 PHE 64 86 86 PHE PHE B . n B 1 65 GLY 65 87 87 GLY GLY B . n B 1 66 VAL 66 88 88 VAL VAL B . n B 1 67 PRO 67 89 89 PRO PRO B . n B 1 68 SER 68 90 90 SER SER B . n B 1 69 PHE 69 91 91 PHE PHE B . n B 1 70 SER 70 92 92 SER SER B . n B 1 71 VAL 71 93 93 VAL VAL B . n B 1 72 LYS 72 94 94 LYS LYS B . n B 1 73 GLU 73 95 95 GLU GLU B . n B 1 74 HIS 74 96 96 HIS HIS B . n B 1 75 ARG 75 97 97 ARG ARG B . n B 1 76 LYS 76 98 98 LYS LYS B . n B 1 77 ILE 77 99 99 ILE ILE B . n B 1 78 TYR 78 100 100 TYR TYR B . n B 1 79 THR 79 101 101 THR THR B . n B 1 80 MET 80 102 102 MET MET B . n B 1 81 ILE 81 103 103 ILE ILE B . n B 1 82 TYR 82 104 104 TYR TYR B . n B 1 83 ARG 83 105 105 ARG ARG B . n B 1 84 ASN 84 106 106 ASN ASN B . n B 1 85 LEU 85 107 107 LEU LEU B . n B 1 86 VAL 86 108 108 VAL VAL B . n B 1 87 VAL 87 109 109 VAL VAL B . n B 1 88 VAL 88 110 110 VAL VAL B . n C 2 1 GLN 1 14 ? ? ? C . n C 2 2 SER 2 15 ? ? ? C . n C 2 3 GLN 3 16 ? ? ? C . n C 2 4 GLN 4 17 ? ? ? C . n C 2 5 THR 5 18 18 THR THR C . n C 2 6 PHE 6 19 19 PHE PHE C . n C 2 7 0EH 7 20 20 0EH 0EH C . n C 2 8 ASN 8 21 21 ASN ASN C . n C 2 9 LEU 9 22 22 LEU LEU C . n C 2 10 TRP 10 23 23 TRP TRP C . n C 2 11 ARG 11 24 24 ARG ARG C . n C 2 12 LEU 12 25 25 LEU LEU C . n C 2 13 LEU 13 26 26 LEU LEU C . n C 2 14 MK8 14 27 27 MK8 MK8 C . n C 2 15 GLN 15 28 ? ? ? C . n C 2 16 ASN 16 29 ? ? ? C . n D 2 1 GLN 1 14 ? ? ? D . n D 2 2 SER 2 15 ? ? ? D . n D 2 3 GLN 3 16 ? ? ? D . n D 2 4 GLN 4 17 17 GLN GLN D . n D 2 5 THR 5 18 18 THR THR D . n D 2 6 PHE 6 19 19 PHE PHE D . n D 2 7 0EH 7 20 20 0EH 0EH D . n D 2 8 ASN 8 21 21 ASN ASN D . n D 2 9 LEU 9 22 22 LEU LEU D . n D 2 10 TRP 10 23 23 TRP TRP D . n D 2 11 ARG 11 24 24 ARG ARG D . n D 2 12 LEU 12 25 25 LEU LEU D . n D 2 13 LEU 13 26 26 LEU LEU D . n D 2 14 MK8 14 27 27 MK8 MK8 D . n D 2 15 GLN 15 28 29 GLN GLN D . n D 2 16 ASN 16 29 30 ASN ASN D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL 1 201 2 CL CL A . F 3 CL 1 202 3 CL CL A . G 3 CL 1 203 4 CL CL A . H 3 CL 1 204 5 CL CL A . I 3 CL 1 205 6 CL CL A . J 3 CL 1 201 1 CL CL B . K 3 CL 1 202 7 CL CL B . L 3 CL 1 203 8 CL CL B . M 4 HOH 1 301 10 HOH HOH A . M 4 HOH 2 302 12 HOH HOH A . M 4 HOH 3 303 15 HOH HOH A . M 4 HOH 4 304 17 HOH HOH A . M 4 HOH 5 305 19 HOH HOH A . M 4 HOH 6 306 22 HOH HOH A . M 4 HOH 7 307 24 HOH HOH A . M 4 HOH 8 308 26 HOH HOH A . M 4 HOH 9 309 41 HOH HOH A . M 4 HOH 10 310 44 HOH HOH A . M 4 HOH 11 311 115 HOH HOH A . M 4 HOH 12 312 45 HOH HOH A . M 4 HOH 13 313 48 HOH HOH A . M 4 HOH 14 314 57 HOH HOH A . M 4 HOH 15 315 59 HOH HOH A . M 4 HOH 16 316 120 HOH HOH A . M 4 HOH 17 317 62 HOH HOH A . M 4 HOH 18 318 122 HOH HOH A . M 4 HOH 19 319 64 HOH HOH A . M 4 HOH 20 320 66 HOH HOH A . M 4 HOH 21 321 67 HOH HOH A . M 4 HOH 22 322 70 HOH HOH A . M 4 HOH 23 323 127 HOH HOH A . M 4 HOH 24 324 128 HOH HOH A . M 4 HOH 25 325 73 HOH HOH A . M 4 HOH 26 326 130 HOH HOH A . M 4 HOH 27 327 131 HOH HOH A . M 4 HOH 28 328 76 HOH HOH A . M 4 HOH 29 329 77 HOH HOH A . M 4 HOH 30 330 79 HOH HOH A . M 4 HOH 31 331 80 HOH HOH A . M 4 HOH 32 332 81 HOH HOH A . M 4 HOH 33 333 83 HOH HOH A . M 4 HOH 34 334 84 HOH HOH A . M 4 HOH 35 335 88 HOH HOH A . M 4 HOH 36 336 91 HOH HOH A . M 4 HOH 37 337 100 HOH HOH A . M 4 HOH 38 338 102 HOH HOH A . M 4 HOH 39 339 104 HOH HOH A . M 4 HOH 40 340 2 HOH HOH A . M 4 HOH 41 341 4 HOH HOH A . M 4 HOH 42 342 29 HOH HOH A . M 4 HOH 43 343 36 HOH HOH A . M 4 HOH 44 344 148 HOH HOH A . M 4 HOH 45 345 149 HOH HOH A . M 4 HOH 46 346 43 HOH HOH A . M 4 HOH 47 347 45 HOH HOH A . M 4 HOH 48 348 46 HOH HOH A . M 4 HOH 49 349 48 HOH HOH A . M 4 HOH 50 350 55 HOH HOH A . M 4 HOH 51 351 57 HOH HOH A . M 4 HOH 52 352 90 HOH HOH A . M 4 HOH 53 353 108 HOH HOH A . N 4 HOH 1 301 3 HOH HOH B . N 4 HOH 2 302 6 HOH HOH B . N 4 HOH 3 303 9 HOH HOH B . N 4 HOH 4 304 12 HOH HOH B . N 4 HOH 5 305 13 HOH HOH B . N 4 HOH 6 306 14 HOH HOH B . N 4 HOH 7 307 17 HOH HOH B . N 4 HOH 8 308 18 HOH HOH B . N 4 HOH 9 309 20 HOH HOH B . N 4 HOH 10 310 21 HOH HOH B . N 4 HOH 11 311 22 HOH HOH B . N 4 HOH 12 312 23 HOH HOH B . N 4 HOH 13 313 25 HOH HOH B . N 4 HOH 14 314 113 HOH HOH B . N 4 HOH 15 315 114 HOH HOH B . N 4 HOH 16 316 27 HOH HOH B . N 4 HOH 17 317 28 HOH HOH B . N 4 HOH 18 318 30 HOH HOH B . N 4 HOH 19 319 32 HOH HOH B . N 4 HOH 20 320 33 HOH HOH B . N 4 HOH 21 321 34 HOH HOH B . N 4 HOH 22 322 35 HOH HOH B . N 4 HOH 23 323 36 HOH HOH B . N 4 HOH 24 324 37 HOH HOH B . N 4 HOH 25 325 124 HOH HOH B . N 4 HOH 26 326 125 HOH HOH B . N 4 HOH 27 327 42 HOH HOH B . N 4 HOH 28 328 127 HOH HOH B . N 4 HOH 29 329 43 HOH HOH B . N 4 HOH 30 330 129 HOH HOH B . N 4 HOH 31 331 46 HOH HOH B . N 4 HOH 32 332 47 HOH HOH B . N 4 HOH 33 333 132 HOH HOH B . N 4 HOH 34 334 51 HOH HOH B . N 4 HOH 35 335 52 HOH HOH B . N 4 HOH 36 336 55 HOH HOH B . N 4 HOH 37 337 56 HOH HOH B . N 4 HOH 38 338 137 HOH HOH B . N 4 HOH 39 339 58 HOH HOH B . N 4 HOH 40 340 60 HOH HOH B . N 4 HOH 41 341 140 HOH HOH B . N 4 HOH 42 342 61 HOH HOH B . N 4 HOH 43 343 63 HOH HOH B . N 4 HOH 44 344 65 HOH HOH B . N 4 HOH 45 345 69 HOH HOH B . N 4 HOH 46 346 71 HOH HOH B . N 4 HOH 47 347 74 HOH HOH B . N 4 HOH 48 348 75 HOH HOH B . N 4 HOH 49 349 85 HOH HOH B . N 4 HOH 50 350 87 HOH HOH B . N 4 HOH 51 351 89 HOH HOH B . N 4 HOH 52 352 92 HOH HOH B . N 4 HOH 53 353 93 HOH HOH B . N 4 HOH 54 354 95 HOH HOH B . N 4 HOH 55 355 97 HOH HOH B . N 4 HOH 56 356 99 HOH HOH B . N 4 HOH 57 357 105 HOH HOH B . N 4 HOH 58 358 106 HOH HOH B . N 4 HOH 59 359 7 HOH HOH B . N 4 HOH 60 360 27 HOH HOH B . N 4 HOH 61 361 30 HOH HOH B . N 4 HOH 62 362 31 HOH HOH B . N 4 HOH 63 363 33 HOH HOH B . N 4 HOH 64 364 34 HOH HOH B . N 4 HOH 65 365 35 HOH HOH B . N 4 HOH 66 366 41 HOH HOH B . N 4 HOH 67 367 66 HOH HOH B . N 4 HOH 68 368 124 HOH HOH B . N 4 HOH 69 369 132 HOH HOH B . O 4 HOH 1 101 5 HOH HOH C . O 4 HOH 2 102 11 HOH HOH C . O 4 HOH 3 103 11 HOH HOH C . O 4 HOH 4 104 39 HOH HOH C . O 4 HOH 5 105 50 HOH HOH C . O 4 HOH 6 106 78 HOH HOH C . O 4 HOH 7 107 107 HOH HOH C . O 4 HOH 8 108 113 HOH HOH C . O 4 HOH 9 109 129 HOH HOH C . O 4 HOH 10 110 146 HOH HOH C . O 4 HOH 11 111 151 HOH HOH C . P 4 HOH 1 101 10 HOH HOH D . P 4 HOH 2 102 16 HOH HOH D . P 4 HOH 3 103 23 HOH HOH D . P 4 HOH 4 104 32 HOH HOH D . P 4 HOH 5 105 26 HOH HOH D . P 4 HOH 6 106 40 HOH HOH D . P 4 HOH 7 107 54 HOH HOH D . P 4 HOH 8 108 72 HOH HOH D . P 4 HOH 9 109 94 HOH HOH D . P 4 HOH 10 110 98 HOH HOH D . P 4 HOH 11 111 110 HOH HOH D . P 4 HOH 12 112 123 HOH HOH D . P 4 HOH 13 113 128 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000857 _pdbx_molecule_features.name 'SAH-p53-8 stapled-peptide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class 'Enzyme inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000857 _pdbx_molecule.asym_id C # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C MK8 14 C MK8 27 ? LEU 2-METHYL-L-NORLEUCINE 2 D MK8 14 D MK8 27 ? LEU 2-METHYL-L-NORLEUCINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,H,I,M,P 2 1 B,C,J,K,L,N,O 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1580 ? 1 MORE -47 ? 1 'SSA (A^2)' 5720 ? 2 'ABSA (A^2)' 1350 ? 2 MORE -31 ? 2 'SSA (A^2)' 5620 ? 3 'ABSA (A^2)' 3720 ? 3 MORE -98 ? 3 'SSA (A^2)' 10690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-18 2 'Structure model' 1 1 2012-03-21 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2013-11-13 5 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' Other 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_validate_main_chain_plane 6 5 'Structure model' pdbx_validate_rmsd_angle 7 5 'Structure model' pdbx_validate_torsion 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.auth_atom_id' 2 5 'Structure model' '_atom_site.label_atom_id' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_dist_value' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_conn.pdbx_value_order' 8 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3V3B _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;IN THE UNSTAPLED FORM OF SAH-P53-8 PEPTIDE, THE RESIDUES MK8 AND 0EH HAVE A DOUBLE BOND BETWEEN ATOMS CD=CE AND CAS=CAT, RESPECTIVELY. UPON STAPLE FORMATION IN SAH-P53-8 PEPTIDE, THE CAT=CE DOUBLE BOND FORMS AS DESCRIBED IN NAT. PROTOCOLS. 2011, 6, 761-771 ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 108 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 109 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NE2 A GLN 24 ? ? 1_555 O B HOH 344 ? ? 1_554 2.15 2 1 O A HOH 308 ? ? 1_555 O B HOH 339 ? ? 2_546 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O C 0EH 20 ? ? C C 0EH 20 ? ? N C ASN 21 ? ? 112.21 122.70 -10.49 1.60 Y 2 1 C C LEU 26 ? ? N C MK8 27 ? ? CA C MK8 27 ? ? 139.08 121.70 17.38 2.50 Y 3 1 O D MK8 27 ? ? C D MK8 27 ? ? N D GLN 28 ? ? 107.80 122.70 -14.90 1.60 Y 4 1 C D MK8 27 ? ? N D GLN 28 ? ? CA D GLN 28 ? ? 142.28 121.70 20.58 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 0EH D 20 ? ? -39.83 -57.56 2 1 GLN D 28 ? ? -59.78 63.61 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 0EH C 20 ? ? -10.38 2 1 MK8 D 27 ? ? 22.56 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 29 ? CG ? A ARG 7 CG 2 1 Y 1 A ARG 29 ? CD ? A ARG 7 CD 3 1 Y 1 A ARG 29 ? NE ? A ARG 7 NE 4 1 Y 1 A ARG 29 ? CZ ? A ARG 7 CZ 5 1 Y 1 A ARG 29 ? NH1 ? A ARG 7 NH1 6 1 Y 1 A ARG 29 ? NH2 ? A ARG 7 NH2 7 1 Y 1 A LYS 36 ? CE ? A LYS 14 CE 8 1 Y 1 A LYS 36 ? NZ ? A LYS 14 NZ 9 1 Y 1 A GLN 44 ? CB ? A GLN 22 CB 10 1 Y 1 A GLN 44 ? CG ? A GLN 22 CG 11 1 Y 1 A GLN 44 ? CD ? A GLN 22 CD 12 1 Y 1 A LYS 51 ? CD ? A LYS 29 CD 13 1 Y 1 A LYS 51 ? CE ? A LYS 29 CE 14 1 Y 1 A LYS 51 ? NZ ? A LYS 29 NZ 15 1 Y 1 A LYS 70 ? CD ? A LYS 48 CD 16 1 Y 1 A LYS 70 ? CE ? A LYS 48 CE 17 1 Y 1 A ASN 79 ? OD1 ? A ASN 57 OD1 18 1 Y 1 A ASN 79 ? ND2 ? A ASN 57 ND2 19 1 Y 1 A LEU 81 ? CD1 ? A LEU 59 CD1 20 1 Y 1 A LYS 94 ? CD ? A LYS 72 CD 21 1 Y 1 A LYS 94 ? CE ? A LYS 72 CE 22 1 Y 1 A LYS 94 ? NZ ? A LYS 72 NZ 23 1 Y 1 A ARG 97 ? NE ? A ARG 75 NE 24 1 Y 1 A ARG 97 ? CZ ? A ARG 75 CZ 25 1 Y 1 A ARG 97 ? NH1 ? A ARG 75 NH1 26 1 Y 1 A ARG 97 ? NH2 ? A ARG 75 NH2 27 1 Y 1 A LYS 98 ? CE ? A LYS 76 CE 28 1 Y 1 A ARG 105 ? NE ? A ARG 83 NE 29 1 Y 1 A ARG 105 ? CZ ? A ARG 83 CZ 30 1 Y 1 A ARG 105 ? NH1 ? A ARG 83 NH1 31 1 Y 1 A ARG 105 ? NH2 ? A ARG 83 NH2 32 1 Y 1 B GLU 25 ? OE1 ? B GLU 3 OE1 33 1 Y 1 B ARG 29 ? CG ? B ARG 7 CG 34 1 Y 1 B ARG 29 ? CD ? B ARG 7 CD 35 1 Y 1 B ARG 29 ? NE ? B ARG 7 NE 36 1 Y 1 B ARG 29 ? CZ ? B ARG 7 CZ 37 1 Y 1 B ARG 29 ? NH1 ? B ARG 7 NH1 38 1 Y 1 B ARG 29 ? NH2 ? B ARG 7 NH2 39 1 Y 1 B LYS 36 ? CE ? B LYS 14 CE 40 1 Y 1 B LYS 36 ? NZ ? B LYS 14 NZ 41 1 Y 1 B ALA 43 ? CB ? B ALA 21 CB 42 1 Y 1 B GLN 44 ? NE2 ? B GLN 22 NE2 43 1 Y 1 B MET 50 ? CG ? B MET 28 CG 44 1 Y 1 B LYS 51 ? CG ? B LYS 29 CG 45 1 Y 1 B LYS 51 ? CD ? B LYS 29 CD 46 1 Y 1 B LYS 51 ? CE ? B LYS 29 CE 47 1 Y 1 B LYS 51 ? NZ ? B LYS 29 NZ 48 1 Y 1 B LYS 94 ? CD ? B LYS 72 CD 49 1 Y 1 B LYS 94 ? CE ? B LYS 72 CE 50 1 Y 1 B LYS 94 ? NZ ? B LYS 72 NZ 51 1 Y 1 B ARG 97 ? NE ? B ARG 75 NE 52 1 Y 1 B ARG 97 ? CZ ? B ARG 75 CZ 53 1 Y 1 B ARG 97 ? NH1 ? B ARG 75 NH1 54 1 Y 1 B ARG 97 ? NH2 ? B ARG 75 NH2 55 1 Y 1 D GLN 17 ? CD ? D GLN 4 CD 56 1 Y 1 D GLN 17 ? OE1 ? D GLN 4 OE1 57 1 Y 1 D GLN 17 ? NE2 ? D GLN 4 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 23 ? A MET 1 2 1 Y 1 B MET 23 ? B MET 1 3 1 Y 1 C GLN 14 ? C GLN 1 4 1 Y 1 C SER 15 ? C SER 2 5 1 Y 1 C GLN 16 ? C GLN 3 6 1 Y 1 C GLN 17 ? C GLN 4 7 1 Y 1 C GLN 28 ? C GLN 15 8 1 Y 1 C ASN 29 ? C ASN 16 9 1 Y 1 D GLN 14 ? D GLN 1 10 1 Y 1 D SER 15 ? D SER 2 11 1 Y 1 D GLN 16 ? D GLN 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0EH O O N N 1 0EH C C N N 2 0EH CA C N R 3 0EH CAA C N N 4 0EH CAB C N N 5 0EH N N N N 6 0EH CAO C N N 7 0EH CAP C N N 8 0EH CAQ C N N 9 0EH CAR C N N 10 0EH CAS C N N 11 0EH CAT C N N 12 0EH H1 H N N 13 0EH H3 H N N 14 0EH H4 H N N 15 0EH H5 H N N 16 0EH H6 H N N 17 0EH H H N N 18 0EH H2 H N N 19 0EH H10 H N N 20 0EH H11 H N N 21 0EH H12 H N N 22 0EH H13 H N N 23 0EH H14 H N N 24 0EH H15 H N N 25 0EH H16 H N N 26 0EH H17 H N N 27 0EH H18 H N N 28 0EH H19 H N N 29 0EH H20 H N N 30 0EH H21 H N N 31 0EH H22 H N N 32 0EH OXT O N N 33 0EH HXT H N N 34 ALA N N N N 35 ALA CA C N S 36 ALA C C N N 37 ALA O O N N 38 ALA CB C N N 39 ALA OXT O N N 40 ALA H H N N 41 ALA H2 H N N 42 ALA HA H N N 43 ALA HB1 H N N 44 ALA HB2 H N N 45 ALA HB3 H N N 46 ALA HXT H N N 47 ARG N N N N 48 ARG CA C N S 49 ARG C C N N 50 ARG O O N N 51 ARG CB C N N 52 ARG CG C N N 53 ARG CD C N N 54 ARG NE N N N 55 ARG CZ C N N 56 ARG NH1 N N N 57 ARG NH2 N N N 58 ARG OXT O N N 59 ARG H H N N 60 ARG H2 H N N 61 ARG HA H N N 62 ARG HB2 H N N 63 ARG HB3 H N N 64 ARG HG2 H N N 65 ARG HG3 H N N 66 ARG HD2 H N N 67 ARG HD3 H N N 68 ARG HE H N N 69 ARG HH11 H N N 70 ARG HH12 H N N 71 ARG HH21 H N N 72 ARG HH22 H N N 73 ARG HXT H N N 74 ASN N N N N 75 ASN CA C N S 76 ASN C C N N 77 ASN O O N N 78 ASN CB C N N 79 ASN CG C N N 80 ASN OD1 O N N 81 ASN ND2 N N N 82 ASN OXT O N N 83 ASN H H N N 84 ASN H2 H N N 85 ASN HA H N N 86 ASN HB2 H N N 87 ASN HB3 H N N 88 ASN HD21 H N N 89 ASN HD22 H N N 90 ASN HXT H N N 91 ASP N N N N 92 ASP CA C N S 93 ASP C C N N 94 ASP O O N N 95 ASP CB C N N 96 ASP CG C N N 97 ASP OD1 O N N 98 ASP OD2 O N N 99 ASP OXT O N N 100 ASP H H N N 101 ASP H2 H N N 102 ASP HA H N N 103 ASP HB2 H N N 104 ASP HB3 H N N 105 ASP HD2 H N N 106 ASP HXT H N N 107 CL CL CL N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 GLN N N N N 123 GLN CA C N S 124 GLN C C N N 125 GLN O O N N 126 GLN CB C N N 127 GLN CG C N N 128 GLN CD C N N 129 GLN OE1 O N N 130 GLN NE2 N N N 131 GLN OXT O N N 132 GLN H H N N 133 GLN H2 H N N 134 GLN HA H N N 135 GLN HB2 H N N 136 GLN HB3 H N N 137 GLN HG2 H N N 138 GLN HG3 H N N 139 GLN HE21 H N N 140 GLN HE22 H N N 141 GLN HXT H N N 142 GLU N N N N 143 GLU CA C N S 144 GLU C C N N 145 GLU O O N N 146 GLU CB C N N 147 GLU CG C N N 148 GLU CD C N N 149 GLU OE1 O N N 150 GLU OE2 O N N 151 GLU OXT O N N 152 GLU H H N N 153 GLU H2 H N N 154 GLU HA H N N 155 GLU HB2 H N N 156 GLU HB3 H N N 157 GLU HG2 H N N 158 GLU HG3 H N N 159 GLU HE2 H N N 160 GLU HXT H N N 161 GLY N N N N 162 GLY CA C N N 163 GLY C C N N 164 GLY O O N N 165 GLY OXT O N N 166 GLY H H N N 167 GLY H2 H N N 168 GLY HA2 H N N 169 GLY HA3 H N N 170 GLY HXT H N N 171 HIS N N N N 172 HIS CA C N S 173 HIS C C N N 174 HIS O O N N 175 HIS CB C N N 176 HIS CG C Y N 177 HIS ND1 N Y N 178 HIS CD2 C Y N 179 HIS CE1 C Y N 180 HIS NE2 N Y N 181 HIS OXT O N N 182 HIS H H N N 183 HIS H2 H N N 184 HIS HA H N N 185 HIS HB2 H N N 186 HIS HB3 H N N 187 HIS HD1 H N N 188 HIS HD2 H N N 189 HIS HE1 H N N 190 HIS HE2 H N N 191 HIS HXT H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 ILE N N N N 196 ILE CA C N S 197 ILE C C N N 198 ILE O O N N 199 ILE CB C N S 200 ILE CG1 C N N 201 ILE CG2 C N N 202 ILE CD1 C N N 203 ILE OXT O N N 204 ILE H H N N 205 ILE H2 H N N 206 ILE HA H N N 207 ILE HB H N N 208 ILE HG12 H N N 209 ILE HG13 H N N 210 ILE HG21 H N N 211 ILE HG22 H N N 212 ILE HG23 H N N 213 ILE HD11 H N N 214 ILE HD12 H N N 215 ILE HD13 H N N 216 ILE HXT H N N 217 LEU N N N N 218 LEU CA C N S 219 LEU C C N N 220 LEU O O N N 221 LEU CB C N N 222 LEU CG C N N 223 LEU CD1 C N N 224 LEU CD2 C N N 225 LEU OXT O N N 226 LEU H H N N 227 LEU H2 H N N 228 LEU HA H N N 229 LEU HB2 H N N 230 LEU HB3 H N N 231 LEU HG H N N 232 LEU HD11 H N N 233 LEU HD12 H N N 234 LEU HD13 H N N 235 LEU HD21 H N N 236 LEU HD22 H N N 237 LEU HD23 H N N 238 LEU HXT H N N 239 LYS N N N N 240 LYS CA C N S 241 LYS C C N N 242 LYS O O N N 243 LYS CB C N N 244 LYS CG C N N 245 LYS CD C N N 246 LYS CE C N N 247 LYS NZ N N N 248 LYS OXT O N N 249 LYS H H N N 250 LYS H2 H N N 251 LYS HA H N N 252 LYS HB2 H N N 253 LYS HB3 H N N 254 LYS HG2 H N N 255 LYS HG3 H N N 256 LYS HD2 H N N 257 LYS HD3 H N N 258 LYS HE2 H N N 259 LYS HE3 H N N 260 LYS HZ1 H N N 261 LYS HZ2 H N N 262 LYS HZ3 H N N 263 LYS HXT H N N 264 MET N N N N 265 MET CA C N S 266 MET C C N N 267 MET O O N N 268 MET CB C N N 269 MET CG C N N 270 MET SD S N N 271 MET CE C N N 272 MET OXT O N N 273 MET H H N N 274 MET H2 H N N 275 MET HA H N N 276 MET HB2 H N N 277 MET HB3 H N N 278 MET HG2 H N N 279 MET HG3 H N N 280 MET HE1 H N N 281 MET HE2 H N N 282 MET HE3 H N N 283 MET HXT H N N 284 MK8 C C N N 285 MK8 N N N N 286 MK8 O O N N 287 MK8 CA C N S 288 MK8 CB C N N 289 MK8 CD C N N 290 MK8 CE C N N 291 MK8 CG C N N 292 MK8 CB1 C N N 293 MK8 OXT O N N 294 MK8 H H N N 295 MK8 H2 H N N 296 MK8 HB H N N 297 MK8 HBA H N N 298 MK8 HD H N N 299 MK8 HDA H N N 300 MK8 HE H N N 301 MK8 HEA H N N 302 MK8 HEB H N N 303 MK8 HG H N N 304 MK8 HGA H N N 305 MK8 HB1 H N N 306 MK8 HB1A H N N 307 MK8 HB1B H N N 308 MK8 HXT H N N 309 PHE N N N N 310 PHE CA C N S 311 PHE C C N N 312 PHE O O N N 313 PHE CB C N N 314 PHE CG C Y N 315 PHE CD1 C Y N 316 PHE CD2 C Y N 317 PHE CE1 C Y N 318 PHE CE2 C Y N 319 PHE CZ C Y N 320 PHE OXT O N N 321 PHE H H N N 322 PHE H2 H N N 323 PHE HA H N N 324 PHE HB2 H N N 325 PHE HB3 H N N 326 PHE HD1 H N N 327 PHE HD2 H N N 328 PHE HE1 H N N 329 PHE HE2 H N N 330 PHE HZ H N N 331 PHE HXT H N N 332 PRO N N N N 333 PRO CA C N S 334 PRO C C N N 335 PRO O O N N 336 PRO CB C N N 337 PRO CG C N N 338 PRO CD C N N 339 PRO OXT O N N 340 PRO H H N N 341 PRO HA H N N 342 PRO HB2 H N N 343 PRO HB3 H N N 344 PRO HG2 H N N 345 PRO HG3 H N N 346 PRO HD2 H N N 347 PRO HD3 H N N 348 PRO HXT H N N 349 SER N N N N 350 SER CA C N S 351 SER C C N N 352 SER O O N N 353 SER CB C N N 354 SER OG O N N 355 SER OXT O N N 356 SER H H N N 357 SER H2 H N N 358 SER HA H N N 359 SER HB2 H N N 360 SER HB3 H N N 361 SER HG H N N 362 SER HXT H N N 363 THR N N N N 364 THR CA C N S 365 THR C C N N 366 THR O O N N 367 THR CB C N R 368 THR OG1 O N N 369 THR CG2 C N N 370 THR OXT O N N 371 THR H H N N 372 THR H2 H N N 373 THR HA H N N 374 THR HB H N N 375 THR HG1 H N N 376 THR HG21 H N N 377 THR HG22 H N N 378 THR HG23 H N N 379 THR HXT H N N 380 TRP N N N N 381 TRP CA C N S 382 TRP C C N N 383 TRP O O N N 384 TRP CB C N N 385 TRP CG C Y N 386 TRP CD1 C Y N 387 TRP CD2 C Y N 388 TRP NE1 N Y N 389 TRP CE2 C Y N 390 TRP CE3 C Y N 391 TRP CZ2 C Y N 392 TRP CZ3 C Y N 393 TRP CH2 C Y N 394 TRP OXT O N N 395 TRP H H N N 396 TRP H2 H N N 397 TRP HA H N N 398 TRP HB2 H N N 399 TRP HB3 H N N 400 TRP HD1 H N N 401 TRP HE1 H N N 402 TRP HE3 H N N 403 TRP HZ2 H N N 404 TRP HZ3 H N N 405 TRP HH2 H N N 406 TRP HXT H N N 407 TYR N N N N 408 TYR CA C N S 409 TYR C C N N 410 TYR O O N N 411 TYR CB C N N 412 TYR CG C Y N 413 TYR CD1 C Y N 414 TYR CD2 C Y N 415 TYR CE1 C Y N 416 TYR CE2 C Y N 417 TYR CZ C Y N 418 TYR OH O N N 419 TYR OXT O N N 420 TYR H H N N 421 TYR H2 H N N 422 TYR HA H N N 423 TYR HB2 H N N 424 TYR HB3 H N N 425 TYR HD1 H N N 426 TYR HD2 H N N 427 TYR HE1 H N N 428 TYR HE2 H N N 429 TYR HH H N N 430 TYR HXT H N N 431 VAL N N N N 432 VAL CA C N S 433 VAL C C N N 434 VAL O O N N 435 VAL CB C N N 436 VAL CG1 C N N 437 VAL CG2 C N N 438 VAL OXT O N N 439 VAL H H N N 440 VAL H2 H N N 441 VAL HA H N N 442 VAL HB H N N 443 VAL HG11 H N N 444 VAL HG12 H N N 445 VAL HG13 H N N 446 VAL HG21 H N N 447 VAL HG22 H N N 448 VAL HG23 H N N 449 VAL HXT H N N 450 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0EH CAT CAS sing N N 1 0EH O C doub N N 2 0EH CAR CAS sing N N 3 0EH CAR CAQ sing N N 4 0EH C CA sing N N 5 0EH CAA CA sing N N 6 0EH CAO CAP sing N N 7 0EH CAO CAB sing N N 8 0EH CAQ CAP sing N N 9 0EH CA CAB sing N N 10 0EH CA N sing N N 11 0EH CAA H1 sing N N 12 0EH CAA H3 sing N N 13 0EH CAA H4 sing N N 14 0EH CAB H5 sing N N 15 0EH CAB H6 sing N N 16 0EH N H sing N N 17 0EH N H2 sing N N 18 0EH CAO H10 sing N N 19 0EH CAO H11 sing N N 20 0EH CAP H12 sing N N 21 0EH CAP H13 sing N N 22 0EH CAQ H14 sing N N 23 0EH CAQ H15 sing N N 24 0EH CAR H16 sing N N 25 0EH CAR H17 sing N N 26 0EH CAS H18 sing N N 27 0EH CAS H19 sing N N 28 0EH CAT H20 sing N N 29 0EH CAT H21 sing N N 30 0EH CAT H22 sing N N 31 0EH C OXT sing N N 32 0EH OXT HXT sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 ARG N CA sing N N 46 ARG N H sing N N 47 ARG N H2 sing N N 48 ARG CA C sing N N 49 ARG CA CB sing N N 50 ARG CA HA sing N N 51 ARG C O doub N N 52 ARG C OXT sing N N 53 ARG CB CG sing N N 54 ARG CB HB2 sing N N 55 ARG CB HB3 sing N N 56 ARG CG CD sing N N 57 ARG CG HG2 sing N N 58 ARG CG HG3 sing N N 59 ARG CD NE sing N N 60 ARG CD HD2 sing N N 61 ARG CD HD3 sing N N 62 ARG NE CZ sing N N 63 ARG NE HE sing N N 64 ARG CZ NH1 sing N N 65 ARG CZ NH2 doub N N 66 ARG NH1 HH11 sing N N 67 ARG NH1 HH12 sing N N 68 ARG NH2 HH21 sing N N 69 ARG NH2 HH22 sing N N 70 ARG OXT HXT sing N N 71 ASN N CA sing N N 72 ASN N H sing N N 73 ASN N H2 sing N N 74 ASN CA C sing N N 75 ASN CA CB sing N N 76 ASN CA HA sing N N 77 ASN C O doub N N 78 ASN C OXT sing N N 79 ASN CB CG sing N N 80 ASN CB HB2 sing N N 81 ASN CB HB3 sing N N 82 ASN CG OD1 doub N N 83 ASN CG ND2 sing N N 84 ASN ND2 HD21 sing N N 85 ASN ND2 HD22 sing N N 86 ASN OXT HXT sing N N 87 ASP N CA sing N N 88 ASP N H sing N N 89 ASP N H2 sing N N 90 ASP CA C sing N N 91 ASP CA CB sing N N 92 ASP CA HA sing N N 93 ASP C O doub N N 94 ASP C OXT sing N N 95 ASP CB CG sing N N 96 ASP CB HB2 sing N N 97 ASP CB HB3 sing N N 98 ASP CG OD1 doub N N 99 ASP CG OD2 sing N N 100 ASP OD2 HD2 sing N N 101 ASP OXT HXT sing N N 102 CYS N CA sing N N 103 CYS N H sing N N 104 CYS N H2 sing N N 105 CYS CA C sing N N 106 CYS CA CB sing N N 107 CYS CA HA sing N N 108 CYS C O doub N N 109 CYS C OXT sing N N 110 CYS CB SG sing N N 111 CYS CB HB2 sing N N 112 CYS CB HB3 sing N N 113 CYS SG HG sing N N 114 CYS OXT HXT sing N N 115 GLN N CA sing N N 116 GLN N H sing N N 117 GLN N H2 sing N N 118 GLN CA C sing N N 119 GLN CA CB sing N N 120 GLN CA HA sing N N 121 GLN C O doub N N 122 GLN C OXT sing N N 123 GLN CB CG sing N N 124 GLN CB HB2 sing N N 125 GLN CB HB3 sing N N 126 GLN CG CD sing N N 127 GLN CG HG2 sing N N 128 GLN CG HG3 sing N N 129 GLN CD OE1 doub N N 130 GLN CD NE2 sing N N 131 GLN NE2 HE21 sing N N 132 GLN NE2 HE22 sing N N 133 GLN OXT HXT sing N N 134 GLU N CA sing N N 135 GLU N H sing N N 136 GLU N H2 sing N N 137 GLU CA C sing N N 138 GLU CA CB sing N N 139 GLU CA HA sing N N 140 GLU C O doub N N 141 GLU C OXT sing N N 142 GLU CB CG sing N N 143 GLU CB HB2 sing N N 144 GLU CB HB3 sing N N 145 GLU CG CD sing N N 146 GLU CG HG2 sing N N 147 GLU CG HG3 sing N N 148 GLU CD OE1 doub N N 149 GLU CD OE2 sing N N 150 GLU OE2 HE2 sing N N 151 GLU OXT HXT sing N N 152 GLY N CA sing N N 153 GLY N H sing N N 154 GLY N H2 sing N N 155 GLY CA C sing N N 156 GLY CA HA2 sing N N 157 GLY CA HA3 sing N N 158 GLY C O doub N N 159 GLY C OXT sing N N 160 GLY OXT HXT sing N N 161 HIS N CA sing N N 162 HIS N H sing N N 163 HIS N H2 sing N N 164 HIS CA C sing N N 165 HIS CA CB sing N N 166 HIS CA HA sing N N 167 HIS C O doub N N 168 HIS C OXT sing N N 169 HIS CB CG sing N N 170 HIS CB HB2 sing N N 171 HIS CB HB3 sing N N 172 HIS CG ND1 sing Y N 173 HIS CG CD2 doub Y N 174 HIS ND1 CE1 doub Y N 175 HIS ND1 HD1 sing N N 176 HIS CD2 NE2 sing Y N 177 HIS CD2 HD2 sing N N 178 HIS CE1 NE2 sing Y N 179 HIS CE1 HE1 sing N N 180 HIS NE2 HE2 sing N N 181 HIS OXT HXT sing N N 182 HOH O H1 sing N N 183 HOH O H2 sing N N 184 ILE N CA sing N N 185 ILE N H sing N N 186 ILE N H2 sing N N 187 ILE CA C sing N N 188 ILE CA CB sing N N 189 ILE CA HA sing N N 190 ILE C O doub N N 191 ILE C OXT sing N N 192 ILE CB CG1 sing N N 193 ILE CB CG2 sing N N 194 ILE CB HB sing N N 195 ILE CG1 CD1 sing N N 196 ILE CG1 HG12 sing N N 197 ILE CG1 HG13 sing N N 198 ILE CG2 HG21 sing N N 199 ILE CG2 HG22 sing N N 200 ILE CG2 HG23 sing N N 201 ILE CD1 HD11 sing N N 202 ILE CD1 HD12 sing N N 203 ILE CD1 HD13 sing N N 204 ILE OXT HXT sing N N 205 LEU N CA sing N N 206 LEU N H sing N N 207 LEU N H2 sing N N 208 LEU CA C sing N N 209 LEU CA CB sing N N 210 LEU CA HA sing N N 211 LEU C O doub N N 212 LEU C OXT sing N N 213 LEU CB CG sing N N 214 LEU CB HB2 sing N N 215 LEU CB HB3 sing N N 216 LEU CG CD1 sing N N 217 LEU CG CD2 sing N N 218 LEU CG HG sing N N 219 LEU CD1 HD11 sing N N 220 LEU CD1 HD12 sing N N 221 LEU CD1 HD13 sing N N 222 LEU CD2 HD21 sing N N 223 LEU CD2 HD22 sing N N 224 LEU CD2 HD23 sing N N 225 LEU OXT HXT sing N N 226 LYS N CA sing N N 227 LYS N H sing N N 228 LYS N H2 sing N N 229 LYS CA C sing N N 230 LYS CA CB sing N N 231 LYS CA HA sing N N 232 LYS C O doub N N 233 LYS C OXT sing N N 234 LYS CB CG sing N N 235 LYS CB HB2 sing N N 236 LYS CB HB3 sing N N 237 LYS CG CD sing N N 238 LYS CG HG2 sing N N 239 LYS CG HG3 sing N N 240 LYS CD CE sing N N 241 LYS CD HD2 sing N N 242 LYS CD HD3 sing N N 243 LYS CE NZ sing N N 244 LYS CE HE2 sing N N 245 LYS CE HE3 sing N N 246 LYS NZ HZ1 sing N N 247 LYS NZ HZ2 sing N N 248 LYS NZ HZ3 sing N N 249 LYS OXT HXT sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 MK8 C CA sing N N 270 MK8 C OXT sing N N 271 MK8 N H sing N N 272 MK8 N H2 sing N N 273 MK8 O C doub N N 274 MK8 CA N sing N N 275 MK8 CA CB sing N N 276 MK8 CB HB sing N N 277 MK8 CB HBA sing N N 278 MK8 CD CG sing N N 279 MK8 CD HD sing N N 280 MK8 CD HDA sing N N 281 MK8 CE CD sing N N 282 MK8 CE HE sing N N 283 MK8 CE HEA sing N N 284 MK8 CE HEB sing N N 285 MK8 CG CB sing N N 286 MK8 CG HG sing N N 287 MK8 CG HGA sing N N 288 MK8 CB1 CA sing N N 289 MK8 CB1 HB1 sing N N 290 MK8 CB1 HB1A sing N N 291 MK8 CB1 HB1B sing N N 292 MK8 OXT HXT sing N N 293 PHE N CA sing N N 294 PHE N H sing N N 295 PHE N H2 sing N N 296 PHE CA C sing N N 297 PHE CA CB sing N N 298 PHE CA HA sing N N 299 PHE C O doub N N 300 PHE C OXT sing N N 301 PHE CB CG sing N N 302 PHE CB HB2 sing N N 303 PHE CB HB3 sing N N 304 PHE CG CD1 doub Y N 305 PHE CG CD2 sing Y N 306 PHE CD1 CE1 sing Y N 307 PHE CD1 HD1 sing N N 308 PHE CD2 CE2 doub Y N 309 PHE CD2 HD2 sing N N 310 PHE CE1 CZ doub Y N 311 PHE CE1 HE1 sing N N 312 PHE CE2 CZ sing Y N 313 PHE CE2 HE2 sing N N 314 PHE CZ HZ sing N N 315 PHE OXT HXT sing N N 316 PRO N CA sing N N 317 PRO N CD sing N N 318 PRO N H sing N N 319 PRO CA C sing N N 320 PRO CA CB sing N N 321 PRO CA HA sing N N 322 PRO C O doub N N 323 PRO C OXT sing N N 324 PRO CB CG sing N N 325 PRO CB HB2 sing N N 326 PRO CB HB3 sing N N 327 PRO CG CD sing N N 328 PRO CG HG2 sing N N 329 PRO CG HG3 sing N N 330 PRO CD HD2 sing N N 331 PRO CD HD3 sing N N 332 PRO OXT HXT sing N N 333 SER N CA sing N N 334 SER N H sing N N 335 SER N H2 sing N N 336 SER CA C sing N N 337 SER CA CB sing N N 338 SER CA HA sing N N 339 SER C O doub N N 340 SER C OXT sing N N 341 SER CB OG sing N N 342 SER CB HB2 sing N N 343 SER CB HB3 sing N N 344 SER OG HG sing N N 345 SER OXT HXT sing N N 346 THR N CA sing N N 347 THR N H sing N N 348 THR N H2 sing N N 349 THR CA C sing N N 350 THR CA CB sing N N 351 THR CA HA sing N N 352 THR C O doub N N 353 THR C OXT sing N N 354 THR CB OG1 sing N N 355 THR CB CG2 sing N N 356 THR CB HB sing N N 357 THR OG1 HG1 sing N N 358 THR CG2 HG21 sing N N 359 THR CG2 HG22 sing N N 360 THR CG2 HG23 sing N N 361 THR OXT HXT sing N N 362 TRP N CA sing N N 363 TRP N H sing N N 364 TRP N H2 sing N N 365 TRP CA C sing N N 366 TRP CA CB sing N N 367 TRP CA HA sing N N 368 TRP C O doub N N 369 TRP C OXT sing N N 370 TRP CB CG sing N N 371 TRP CB HB2 sing N N 372 TRP CB HB3 sing N N 373 TRP CG CD1 doub Y N 374 TRP CG CD2 sing Y N 375 TRP CD1 NE1 sing Y N 376 TRP CD1 HD1 sing N N 377 TRP CD2 CE2 doub Y N 378 TRP CD2 CE3 sing Y N 379 TRP NE1 CE2 sing Y N 380 TRP NE1 HE1 sing N N 381 TRP CE2 CZ2 sing Y N 382 TRP CE3 CZ3 doub Y N 383 TRP CE3 HE3 sing N N 384 TRP CZ2 CH2 doub Y N 385 TRP CZ2 HZ2 sing N N 386 TRP CZ3 CH2 sing Y N 387 TRP CZ3 HZ3 sing N N 388 TRP CH2 HH2 sing N N 389 TRP OXT HXT sing N N 390 TYR N CA sing N N 391 TYR N H sing N N 392 TYR N H2 sing N N 393 TYR CA C sing N N 394 TYR CA CB sing N N 395 TYR CA HA sing N N 396 TYR C O doub N N 397 TYR C OXT sing N N 398 TYR CB CG sing N N 399 TYR CB HB2 sing N N 400 TYR CB HB3 sing N N 401 TYR CG CD1 doub Y N 402 TYR CG CD2 sing Y N 403 TYR CD1 CE1 sing Y N 404 TYR CD1 HD1 sing N N 405 TYR CD2 CE2 doub Y N 406 TYR CD2 HD2 sing N N 407 TYR CE1 CZ doub Y N 408 TYR CE1 HE1 sing N N 409 TYR CE2 CZ sing Y N 410 TYR CE2 HE2 sing N N 411 TYR CZ OH sing N N 412 TYR OH HH sing N N 413 TYR OXT HXT sing N N 414 VAL N CA sing N N 415 VAL N H sing N N 416 VAL N H2 sing N N 417 VAL CA C sing N N 418 VAL CA CB sing N N 419 VAL CA HA sing N N 420 VAL C O doub N N 421 VAL C OXT sing N N 422 VAL CB CG1 sing N N 423 VAL CB CG2 sing N N 424 VAL CB HB sing N N 425 VAL CG1 HG11 sing N N 426 VAL CG1 HG12 sing N N 427 VAL CG1 HG13 sing N N 428 VAL CG2 HG21 sing N N 429 VAL CG2 HG22 sing N N 430 VAL CG2 HG23 sing N N 431 VAL OXT HXT sing N N 432 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH #