HEADER LYASE 15-DEC-11 3V4S TITLE CRYSTAL STRUCTURE OF ADP-ATP COMPLEX OF PURK: N5-CARBOXYAMINOIMIDAZOLE TITLE 2 RIBONUCLEOTIDE SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PURK; COMPND 5 EC: 4.1.1.21; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 592021; SOURCE 4 STRAIN: A0248; SOURCE 5 GENE: BAA_0344, PURK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS CARBOXYLASE, PURK, SYNTHASE, ADP/ATP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.FUNG,M.L.TUNTLAND,B.D.SANTARSIERO,M.E.JOHNSON REVDAT 4 28-FEB-24 3V4S 1 REMARK SEQADV LINK REVDAT 3 12-NOV-14 3V4S 1 JRNL REVDAT 2 20-FEB-13 3V4S 1 REMARK REVDAT 1 13-FEB-13 3V4S 0 JRNL AUTH M.L.TUNTLAND,B.D.SANTARSIERO,M.E.JOHNSON,L.W.FUNG JRNL TITL ELUCIDATION OF THE BICARBONATE BINDING SITE AND INSIGHTS JRNL TITL 2 INTO THE CARBOXYLATION MECHANISM OF JRNL TITL 3 (N(5))-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHASE (PURK) JRNL TITL 4 FROM BACILLUS ANTHRACIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3057 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25372694 JRNL DOI 10.1107/S1399004714021166 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 51477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2617 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1940 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6096 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8275 ; 1.264 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 759 ; 5.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;40.992 ;25.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1086 ;13.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 7.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 958 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4514 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 3V4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 19.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 5MM DTT, 11% GLYCEROL, 10% REMARK 280 PEG6000, 10MM MGCL2, 17 MM NAHCO3, 17 MM ATP, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.87200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.96400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.96400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.87200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS DIMER AND SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 LEU A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 635 O HOH B 517 1.83 REMARK 500 O HOH A 526 O HOH B 548 1.96 REMARK 500 O HOH B 501 O HOH B 548 1.96 REMARK 500 ND2 ASN A 267 O HOH A 636 1.97 REMARK 500 O3G ATP B 401 O HOH B 539 2.01 REMARK 500 OE1 GLN B 158 O HOH B 576 2.01 REMARK 500 O HOH B 539 O HOH B 551 2.11 REMARK 500 O HOH A 691 O HOH A 747 2.12 REMARK 500 O HOH A 606 O HOH A 637 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 39.67 -85.86 REMARK 500 SER A 141 -165.17 58.53 REMARK 500 ASP B 59 91.15 -65.77 REMARK 500 LEU B 60 31.19 -74.33 REMARK 500 ALA B 92 -164.73 -128.06 REMARK 500 SER B 141 -166.63 59.40 REMARK 500 LEU B 330 33.01 -86.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 268 OE1 REMARK 620 2 ADP A 401 O1A 99.3 REMARK 620 3 ADP A 401 O3B 105.4 75.2 REMARK 620 4 HOH A 710 O 113.7 91.1 140.1 REMARK 620 5 HOH A 730 O 72.9 146.1 75.4 122.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 104 O REMARK 620 2 GLU B 110 OE1 92.5 REMARK 620 3 LEU B 269 O 123.5 80.2 REMARK 620 4 HOH B 579 O 102.3 91.8 133.7 REMARK 620 5 HOH B 607 O 102.3 162.1 83.2 94.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 255 OE1 REMARK 620 2 GLU B 255 OE2 51.8 REMARK 620 3 GLU B 268 OE1 92.0 83.8 REMARK 620 4 ATP B 401 O1A 102.6 151.0 83.9 REMARK 620 5 ATP B 401 O1G 133.2 81.5 84.8 123.3 REMARK 620 6 ATP B 401 O3B 172.8 134.1 85.2 70.6 53.2 REMARK 620 7 HOH B 618 O 91.4 98.7 176.5 94.8 93.2 91.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 B 404 DBREF 3V4S A 1 378 UNP C3PBM5 C3PBM5_BACAA 1 378 DBREF 3V4S B 1 378 UNP C3PBM5 C3PBM5_BACAA 1 378 SEQADV 3V4S GLY A -5 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S SER A -4 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S HIS A -3 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S MET A -2 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S LEU A -1 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S ASP A 0 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S LEU A 379 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S GLU A 380 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S GLY A 381 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S GLY B -5 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S SER B -4 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S HIS B -3 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S MET B -2 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S LEU B -1 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S ASP B 0 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S LEU B 379 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S GLU B 380 UNP C3PBM5 EXPRESSION TAG SEQADV 3V4S GLY B 381 UNP C3PBM5 EXPRESSION TAG SEQRES 1 A 387 GLY SER HIS MET LEU ASP MET THR ARG ILE ILE LEU PRO SEQRES 2 A 387 GLY LYS THR ILE GLY ILE ILE GLY GLY GLY GLN LEU GLY SEQRES 3 A 387 ARG MET MET ALA LEU ALA ALA LYS GLU MET GLY TYR LYS SEQRES 4 A 387 ILE ALA VAL LEU ASP PRO THR LYS ASN SER PRO CYS ALA SEQRES 5 A 387 GLN VAL ALA ASP ILE GLU ILE VAL ALA SER TYR ASP ASP SEQRES 6 A 387 LEU LYS ALA ILE GLN HIS LEU ALA GLU ILE SER ASP VAL SEQRES 7 A 387 VAL THR TYR GLU PHE GLU ASN ILE ASP TYR ARG CYS LEU SEQRES 8 A 387 GLN TRP LEU GLU LYS HIS ALA TYR LEU PRO GLN GLY SER SEQRES 9 A 387 GLN LEU LEU SER LYS THR GLN ASN ARG PHE THR GLU LYS SEQRES 10 A 387 ASN ALA ILE GLU LYS ALA GLY LEU PRO VAL ALA THR TYR SEQRES 11 A 387 ARG LEU VAL GLN ASN GLN GLU GLN LEU THR GLU ALA ILE SEQRES 12 A 387 ALA GLU LEU SER TYR PRO SER VAL LEU LYS THR THR THR SEQRES 13 A 387 GLY GLY TYR ASP GLY LYS GLY GLN VAL VAL LEU ARG SER SEQRES 14 A 387 GLU ALA ASP VAL ASP GLU ALA ARG LYS LEU ALA ASN ALA SEQRES 15 A 387 ALA GLU CYS ILE LEU GLU LYS TRP VAL PRO PHE GLU LYS SEQRES 16 A 387 GLU VAL SER VAL ILE VAL ILE ARG SER VAL SER GLY GLU SEQRES 17 A 387 THR LYS VAL PHE PRO VAL ALA GLU ASN ILE HIS VAL ASN SEQRES 18 A 387 ASN ILE LEU HIS GLU SER ILE VAL PRO ALA ARG ILE THR SEQRES 19 A 387 GLU GLU LEU SER GLN LYS ALA ILE ALA TYR ALA LYS VAL SEQRES 20 A 387 LEU ALA ASP GLU LEU GLU LEU VAL GLY THR LEU ALA VAL SEQRES 21 A 387 GLU MET PHE ALA THR ALA ASP GLY GLU ILE TYR ILE ASN SEQRES 22 A 387 GLU LEU ALA PRO ARG PRO HIS ASN SER GLY HIS TYR THR SEQRES 23 A 387 GLN ASP ALA CYS GLU THR SER GLN PHE GLY GLN HIS ILE SEQRES 24 A 387 ARG ALA ILE CYS ASN LEU PRO LEU GLY GLU THR ASN LEU SEQRES 25 A 387 LEU LYS PRO VAL VAL MET VAL ASN ILE LEU GLY GLU HIS SEQRES 26 A 387 ILE GLU GLY VAL LEU ARG GLN VAL ASN ARG LEU THR GLY SEQRES 27 A 387 CYS TYR LEU HIS LEU TYR GLY LYS GLU GLU ALA LYS ALA SEQRES 28 A 387 GLN ARG LYS MET GLY HIS VAL ASN ILE LEU ASN ASP ASN SEQRES 29 A 387 ILE GLU VAL ALA LEU GLU LYS ALA LYS SER LEU HIS ILE SEQRES 30 A 387 TRP ASP HIS GLN GLU GLN LEU LEU GLU GLY SEQRES 1 B 387 GLY SER HIS MET LEU ASP MET THR ARG ILE ILE LEU PRO SEQRES 2 B 387 GLY LYS THR ILE GLY ILE ILE GLY GLY GLY GLN LEU GLY SEQRES 3 B 387 ARG MET MET ALA LEU ALA ALA LYS GLU MET GLY TYR LYS SEQRES 4 B 387 ILE ALA VAL LEU ASP PRO THR LYS ASN SER PRO CYS ALA SEQRES 5 B 387 GLN VAL ALA ASP ILE GLU ILE VAL ALA SER TYR ASP ASP SEQRES 6 B 387 LEU LYS ALA ILE GLN HIS LEU ALA GLU ILE SER ASP VAL SEQRES 7 B 387 VAL THR TYR GLU PHE GLU ASN ILE ASP TYR ARG CYS LEU SEQRES 8 B 387 GLN TRP LEU GLU LYS HIS ALA TYR LEU PRO GLN GLY SER SEQRES 9 B 387 GLN LEU LEU SER LYS THR GLN ASN ARG PHE THR GLU LYS SEQRES 10 B 387 ASN ALA ILE GLU LYS ALA GLY LEU PRO VAL ALA THR TYR SEQRES 11 B 387 ARG LEU VAL GLN ASN GLN GLU GLN LEU THR GLU ALA ILE SEQRES 12 B 387 ALA GLU LEU SER TYR PRO SER VAL LEU LYS THR THR THR SEQRES 13 B 387 GLY GLY TYR ASP GLY LYS GLY GLN VAL VAL LEU ARG SER SEQRES 14 B 387 GLU ALA ASP VAL ASP GLU ALA ARG LYS LEU ALA ASN ALA SEQRES 15 B 387 ALA GLU CYS ILE LEU GLU LYS TRP VAL PRO PHE GLU LYS SEQRES 16 B 387 GLU VAL SER VAL ILE VAL ILE ARG SER VAL SER GLY GLU SEQRES 17 B 387 THR LYS VAL PHE PRO VAL ALA GLU ASN ILE HIS VAL ASN SEQRES 18 B 387 ASN ILE LEU HIS GLU SER ILE VAL PRO ALA ARG ILE THR SEQRES 19 B 387 GLU GLU LEU SER GLN LYS ALA ILE ALA TYR ALA LYS VAL SEQRES 20 B 387 LEU ALA ASP GLU LEU GLU LEU VAL GLY THR LEU ALA VAL SEQRES 21 B 387 GLU MET PHE ALA THR ALA ASP GLY GLU ILE TYR ILE ASN SEQRES 22 B 387 GLU LEU ALA PRO ARG PRO HIS ASN SER GLY HIS TYR THR SEQRES 23 B 387 GLN ASP ALA CYS GLU THR SER GLN PHE GLY GLN HIS ILE SEQRES 24 B 387 ARG ALA ILE CYS ASN LEU PRO LEU GLY GLU THR ASN LEU SEQRES 25 B 387 LEU LYS PRO VAL VAL MET VAL ASN ILE LEU GLY GLU HIS SEQRES 26 B 387 ILE GLU GLY VAL LEU ARG GLN VAL ASN ARG LEU THR GLY SEQRES 27 B 387 CYS TYR LEU HIS LEU TYR GLY LYS GLU GLU ALA LYS ALA SEQRES 28 B 387 GLN ARG LYS MET GLY HIS VAL ASN ILE LEU ASN ASP ASN SEQRES 29 B 387 ILE GLU VAL ALA LEU GLU LYS ALA LYS SER LEU HIS ILE SEQRES 30 B 387 TRP ASP HIS GLN GLU GLN LEU LEU GLU GLY HET ADP A 401 27 HET MG A 402 1 HET CO3 A 403 4 HET ATP B 401 31 HET MG B 402 1 HET MG B 403 1 HET CO3 B 404 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CO3 CARBONATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 3(MG 2+) FORMUL 5 CO3 2(C O3 2-) FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 10 HOH *479(H2 O) HELIX 1 1 GLY A 17 MET A 30 1 14 HELIX 2 2 ASP A 59 ILE A 69 1 11 HELIX 3 3 ASP A 81 ALA A 92 1 12 HELIX 4 4 SER A 98 GLN A 105 1 8 HELIX 5 5 ASN A 106 ALA A 117 1 12 HELIX 6 6 ASN A 129 SER A 141 1 13 HELIX 7 7 SER A 163 ALA A 165 5 3 HELIX 8 8 ASP A 166 ALA A 177 1 12 HELIX 9 9 THR A 228 LEU A 246 1 19 HELIX 10 10 HIS A 274 HIS A 278 5 5 HELIX 11 11 TYR A 279 CYS A 284 1 6 HELIX 12 12 SER A 287 ASN A 298 1 12 HELIX 13 13 HIS A 319 GLN A 326 1 8 HELIX 14 14 VAL A 327 LEU A 330 5 4 HELIX 15 15 ASN A 358 LEU A 369 1 12 HELIX 16 16 TRP A 372 GLY A 381 1 10 HELIX 17 17 GLY B 17 MET B 30 1 14 HELIX 18 18 CYS B 45 ALA B 49 5 5 HELIX 19 19 LYS B 61 SER B 70 1 10 HELIX 20 20 ASP B 81 ALA B 92 1 12 HELIX 21 21 SER B 98 GLN B 105 1 8 HELIX 22 22 ASN B 106 GLY B 118 1 13 HELIX 23 23 ASN B 129 SER B 141 1 13 HELIX 24 24 SER B 163 ALA B 165 5 3 HELIX 25 25 ASP B 166 ALA B 177 1 12 HELIX 26 26 THR B 228 LEU B 246 1 19 HELIX 27 27 HIS B 274 HIS B 278 5 5 HELIX 28 28 TYR B 279 CYS B 284 1 6 HELIX 29 29 SER B 287 ASN B 298 1 12 HELIX 30 30 HIS B 319 GLN B 326 1 8 HELIX 31 31 VAL B 327 LEU B 330 5 4 HELIX 32 32 ASN B 358 LEU B 369 1 12 HELIX 33 33 TRP B 372 LEU B 379 1 8 SHEET 1 A 4 ILE A 51 VAL A 54 0 SHEET 2 A 4 LYS A 33 ASP A 38 1 N VAL A 36 O ILE A 53 SHEET 3 A 4 THR A 10 ILE A 14 1 N ILE A 11 O LYS A 33 SHEET 4 A 4 VAL A 72 TYR A 75 1 O VAL A 72 N GLY A 12 SHEET 1 B 4 TYR A 124 VAL A 127 0 SHEET 2 B 4 CYS A 179 LYS A 183 -1 O CYS A 179 N VAL A 127 SHEET 3 B 4 SER A 144 THR A 148 -1 N VAL A 145 O GLU A 182 SHEET 4 B 4 GLN A 158 LEU A 161 -1 O LEU A 161 N SER A 144 SHEET 1 C 4 THR A 203 VAL A 205 0 SHEET 2 C 4 LYS A 189 ARG A 197 -1 N ILE A 196 O LYS A 204 SHEET 3 C 4 GLY A 250 ALA A 258 -1 O MET A 256 N VAL A 191 SHEET 4 C 4 ILE A 264 ALA A 270 -1 O ALA A 270 N ALA A 253 SHEET 1 D 7 THR A 203 VAL A 205 0 SHEET 2 D 7 LYS A 189 ARG A 197 -1 N ILE A 196 O LYS A 204 SHEET 3 D 7 ALA A 209 VAL A 214 -1 O ASN A 211 N GLU A 190 SHEET 4 D 7 ILE A 217 VAL A 223 -1 O HIS A 219 N ILE A 212 SHEET 5 D 7 VAL A 310 LEU A 316 -1 O VAL A 310 N VAL A 223 SHEET 6 D 7 LYS A 348 LEU A 355 -1 O ILE A 354 N VAL A 311 SHEET 7 D 7 CYS A 333 LEU A 337 -1 N TYR A 334 O ASN A 353 SHEET 1 E 4 ILE B 51 VAL B 54 0 SHEET 2 E 4 LYS B 33 ASP B 38 1 N VAL B 36 O ILE B 53 SHEET 3 E 4 THR B 10 ILE B 14 1 N ILE B 11 O LYS B 33 SHEET 4 E 4 VAL B 72 TYR B 75 1 O VAL B 72 N GLY B 12 SHEET 1 F 4 TYR B 124 VAL B 127 0 SHEET 2 F 4 CYS B 179 LYS B 183 -1 O CYS B 179 N VAL B 127 SHEET 3 F 4 SER B 144 THR B 148 -1 N VAL B 145 O GLU B 182 SHEET 4 F 4 GLN B 158 LEU B 161 -1 O LEU B 161 N SER B 144 SHEET 1 G 4 THR B 203 VAL B 205 0 SHEET 2 G 4 LYS B 189 ARG B 197 -1 N ILE B 196 O LYS B 204 SHEET 3 G 4 GLY B 250 ALA B 258 -1 O GLY B 250 N ARG B 197 SHEET 4 G 4 ILE B 264 ALA B 270 -1 O ASN B 267 N GLU B 255 SHEET 1 H 7 THR B 203 VAL B 205 0 SHEET 2 H 7 LYS B 189 ARG B 197 -1 N ILE B 196 O LYS B 204 SHEET 3 H 7 ALA B 209 VAL B 214 -1 O ALA B 209 N SER B 192 SHEET 4 H 7 ILE B 217 VAL B 223 -1 O HIS B 219 N ILE B 212 SHEET 5 H 7 VAL B 310 LEU B 316 -1 O VAL B 310 N VAL B 223 SHEET 6 H 7 LYS B 348 LEU B 355 -1 O ILE B 354 N VAL B 311 SHEET 7 H 7 CYS B 333 LEU B 337 -1 N TYR B 334 O ASN B 353 LINK OE1 GLU A 268 MG MG A 402 1555 1555 1.99 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.13 LINK O3B ADP A 401 MG MG A 402 1555 1555 2.15 LINK MG MG A 402 O HOH A 710 1555 1555 2.22 LINK MG MG A 402 O HOH A 730 1555 1555 2.74 LINK O THR B 104 MG MG B 403 1555 1555 2.35 LINK OE1 GLU B 110 MG MG B 403 1555 1555 2.45 LINK OE1 GLU B 255 MG MG B 402 1555 1555 2.31 LINK OE2 GLU B 255 MG MG B 402 1555 1555 2.63 LINK OE1 GLU B 268 MG MG B 402 1555 1555 2.25 LINK O LEU B 269 MG MG B 403 1555 1555 2.41 LINK O1A ATP B 401 MG MG B 402 1555 1555 2.07 LINK O1G ATP B 401 MG MG B 402 1555 1555 2.25 LINK O3B ATP B 401 MG MG B 402 1555 1555 2.99 LINK MG MG B 402 O HOH B 618 1555 1555 1.97 LINK MG MG B 403 O HOH B 579 1555 1555 2.23 LINK MG MG B 403 O HOH B 607 1555 1555 2.15 CISPEP 1 TYR A 142 PRO A 143 0 -4.78 CISPEP 2 VAL A 223 PRO A 224 0 2.82 CISPEP 3 TYR B 142 PRO B 143 0 0.62 CISPEP 4 VAL B 223 PRO B 224 0 5.33 SITE 1 AC1 19 ARG A 107 LYS A 147 TYR A 153 ASP A 154 SITE 2 AC1 19 GLY A 155 GLN A 158 GLU A 182 LYS A 183 SITE 3 AC1 19 TRP A 184 VAL A 185 PHE A 187 GLU A 190 SITE 4 AC1 19 ASN A 216 PHE A 257 ASN A 267 GLU A 268 SITE 5 AC1 19 MG A 402 HOH A 720 HOH A 730 SITE 1 AC2 4 GLU A 268 ADP A 401 HOH A 710 HOH A 730 SITE 1 AC3 5 ARG A 272 HIS A 274 ASN A 275 LYS A 348 SITE 2 AC3 5 HOH A 508 SITE 1 AC4 26 ARG B 107 LYS B 147 TYR B 153 ASP B 154 SITE 2 AC4 26 GLY B 155 GLN B 158 GLU B 182 LYS B 183 SITE 3 AC4 26 TRP B 184 VAL B 185 PHE B 187 GLU B 190 SITE 4 AC4 26 HIS B 213 ASN B 216 GLU B 255 PHE B 257 SITE 5 AC4 26 ASN B 267 GLU B 268 MG B 402 HOH B 539 SITE 6 AC4 26 HOH B 551 HOH B 618 HOH B 619 HOH B 656 SITE 7 AC4 26 HOH B 658 HOH B 661 SITE 1 AC5 4 GLU B 255 GLU B 268 ATP B 401 HOH B 618 SITE 1 AC6 5 THR B 104 GLU B 110 LEU B 269 HOH B 579 SITE 2 AC6 5 HOH B 607 SITE 1 AC7 6 ARG B 272 HIS B 274 ASN B 275 LYS B 348 SITE 2 AC7 6 HOH B 512 HOH B 661 CRYST1 57.744 82.870 167.928 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005955 0.00000