HEADER DNA BINDING PROTEIN/DNA 06-JAN-12 3VDY TITLE B. SUBTILIS SSBB/SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN SSBB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SSB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T COMPND 8 P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'; COMPND 9 CHAIN: C, D, E, F, G; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SSBB, YWPH, BSU36310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC DNA; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS OB FOLD, SINGLE-STRAND DNA BINDING, SSDNA, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.YADAV,B.CARRASCO,A.R.MYERS,N.P.GEORGE,J.L.KECK,J.C.ALONSO REVDAT 3 28-FEB-24 3VDY 1 SEQADV REVDAT 2 25-JUL-12 3VDY 1 JRNL DBREF REVDAT 1 14-MAR-12 3VDY 0 JRNL AUTH T.YADAV,B.CARRASCO,A.R.MYERS,N.P.GEORGE,J.L.KECK,J.C.ALONSO JRNL TITL GENETIC RECOMBINATION IN BACILLUS SUBTILIS: A DIVISION OF JRNL TITL 2 LABOR BETWEEN TWO SINGLE-STRAND DNA-BINDING PROTEINS. JRNL REF NUCLEIC ACIDS RES. V. 40 5546 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22373918 JRNL DOI 10.1093/NAR/GKS173 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 14643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 777 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.5150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1537 REMARK 3 NUCLEIC ACID ATOMS : 480 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.70000 REMARK 3 B22 (A**2) : -1.70000 REMARK 3 B33 (A**2) : 3.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.367 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.280 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2081 ; 0.010 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2905 ; 1.442 ; 1.792 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 6.585 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;36.805 ;23.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;21.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.682 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1398 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 104 REMARK 3 RESIDUE RANGE : F 1 F 10 REMARK 3 RESIDUE RANGE : E 12 E 15 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8299 21.7127 64.3298 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.1029 REMARK 3 T33: 0.0703 T12: 0.0480 REMARK 3 T13: -0.0252 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.2941 L22: 2.5083 REMARK 3 L33: 4.1405 L12: 0.2537 REMARK 3 L13: 0.6611 L23: 0.2757 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.1598 S13: -0.1563 REMARK 3 S21: 0.0537 S22: -0.1002 S23: -0.2450 REMARK 3 S31: 0.2706 S32: 0.4005 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 105 REMARK 3 RESIDUE RANGE : C 5 C 8 REMARK 3 RESIDUE RANGE : G 14 G 16 REMARK 3 RESIDUE RANGE : D 1 D 3 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6462 28.4062 69.2863 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.1211 REMARK 3 T33: 0.0535 T12: 0.0655 REMARK 3 T13: 0.0102 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.8193 L22: 2.4601 REMARK 3 L33: 3.0563 L12: 0.9658 REMARK 3 L13: -1.1450 L23: -0.3870 REMARK 3 S TENSOR REMARK 3 S11: -0.0766 S12: -0.1013 S13: 0.1288 REMARK 3 S21: 0.2105 S22: -0.0007 S23: 0.0906 REMARK 3 S31: -0.2485 S32: -0.3848 S33: 0.0773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3VDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000069924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.53, 1.008 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NAACETATE, PH 5.6, 10 MM REMARK 280 MGCL(2), 1.8 M AMMONIUM SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.28550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.87650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.87650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.92825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.87650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.87650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.64275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.87650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.87650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.92825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.87650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.87650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.64275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.28550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 118.57100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ASN A 84 REMARK 465 GLU A 85 REMARK 465 GLU A 86 REMARK 465 GLY A 87 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 PRO A 107 REMARK 465 ARG A 108 REMARK 465 GLU A 109 REMARK 465 LYS A 110 REMARK 465 ALA A 111 REMARK 465 ALA A 112 REMARK 465 ASP A 113 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 SER B 81 REMARK 465 TYR B 82 REMARK 465 GLU B 83 REMARK 465 ASN B 84 REMARK 465 GLU B 85 REMARK 465 GLU B 86 REMARK 465 GLY B 87 REMARK 465 VAL B 88 REMARK 465 LYS B 106 REMARK 465 PRO B 107 REMARK 465 ARG B 108 REMARK 465 GLU B 109 REMARK 465 LYS B 110 REMARK 465 ALA B 111 REMARK 465 ALA B 112 REMARK 465 ASP B 113 REMARK 465 DT C 9 REMARK 465 DT C 10 REMARK 465 DT C 11 REMARK 465 DT C 12 REMARK 465 DT C 13 REMARK 465 DT C 14 REMARK 465 DT C 15 REMARK 465 DT C 16 REMARK 465 DT C 17 REMARK 465 DT C 18 REMARK 465 DT C 19 REMARK 465 DT C 20 REMARK 465 DT C 21 REMARK 465 DT C 22 REMARK 465 DT C 23 REMARK 465 DT C 24 REMARK 465 DT C 25 REMARK 465 DT C 26 REMARK 465 DT C 27 REMARK 465 DT C 28 REMARK 465 DT C 29 REMARK 465 DT C 30 REMARK 465 DT C 31 REMARK 465 DT C 32 REMARK 465 DT C 33 REMARK 465 DT C 34 REMARK 465 DT C 35 REMARK 465 DT C 36 REMARK 465 DT C 37 REMARK 465 DT C 38 REMARK 465 DT C 39 REMARK 465 DT D 4 REMARK 465 DT D 5 REMARK 465 DT D 6 REMARK 465 DT D 7 REMARK 465 DT D 8 REMARK 465 DT D 9 REMARK 465 DT D 10 REMARK 465 DT D 11 REMARK 465 DT D 12 REMARK 465 DT D 13 REMARK 465 DT D 14 REMARK 465 DT D 15 REMARK 465 DT D 16 REMARK 465 DT D 17 REMARK 465 DT D 18 REMARK 465 DT D 19 REMARK 465 DT D 20 REMARK 465 DT D 21 REMARK 465 DT D 22 REMARK 465 DT D 23 REMARK 465 DT D 24 REMARK 465 DT D 25 REMARK 465 DT D 26 REMARK 465 DT D 27 REMARK 465 DT D 28 REMARK 465 DT D 29 REMARK 465 DT D 30 REMARK 465 DT D 31 REMARK 465 DT D 32 REMARK 465 DT D 33 REMARK 465 DT D 34 REMARK 465 DT D 35 REMARK 465 DT E 16 REMARK 465 DT E 17 REMARK 465 DT E 18 REMARK 465 DT E 19 REMARK 465 DT E 20 REMARK 465 DT E 21 REMARK 465 DT E 22 REMARK 465 DT E 23 REMARK 465 DT E 24 REMARK 465 DT E 25 REMARK 465 DT E 26 REMARK 465 DT E 27 REMARK 465 DT E 28 REMARK 465 DT E 29 REMARK 465 DT E 30 REMARK 465 DT E 31 REMARK 465 DT E 32 REMARK 465 DT E 33 REMARK 465 DT E 34 REMARK 465 DT E 35 REMARK 465 DT E 36 REMARK 465 DT E 37 REMARK 465 DT E 38 REMARK 465 DT E 39 REMARK 465 DT E 40 REMARK 465 DT E 41 REMARK 465 DT E 42 REMARK 465 DT E 43 REMARK 465 DT E 44 REMARK 465 DT E 45 REMARK 465 DT E 46 REMARK 465 DT F 11 REMARK 465 DT F 12 REMARK 465 DT F 13 REMARK 465 DT F 14 REMARK 465 DT F 15 REMARK 465 DT F 16 REMARK 465 DT F 17 REMARK 465 DT F 18 REMARK 465 DT F 19 REMARK 465 DT F 20 REMARK 465 DT F 21 REMARK 465 DT F 22 REMARK 465 DT F 23 REMARK 465 DT F 24 REMARK 465 DT F 25 REMARK 465 DT F 26 REMARK 465 DT F 27 REMARK 465 DT F 28 REMARK 465 DT F 29 REMARK 465 DT F 30 REMARK 465 DT F 31 REMARK 465 DT F 32 REMARK 465 DT F 33 REMARK 465 DT F 34 REMARK 465 DT F 35 REMARK 465 DT G 17 REMARK 465 DT G 18 REMARK 465 DT G 19 REMARK 465 DT G 20 REMARK 465 DT G 21 REMARK 465 DT G 22 REMARK 465 DT G 23 REMARK 465 DT G 24 REMARK 465 DT G 25 REMARK 465 DT G 26 REMARK 465 DT G 27 REMARK 465 DT G 28 REMARK 465 DT G 29 REMARK 465 DT G 30 REMARK 465 DT G 31 REMARK 465 DT G 32 REMARK 465 DT G 33 REMARK 465 DT G 34 REMARK 465 DT G 35 REMARK 465 DT G 36 REMARK 465 DT G 37 REMARK 465 DT G 38 REMARK 465 DT G 39 REMARK 465 DT G 40 REMARK 465 DT G 41 REMARK 465 DT G 42 REMARK 465 DT G 43 REMARK 465 DT G 44 REMARK 465 DT G 45 REMARK 465 DT G 46 REMARK 465 DT G 47 REMARK 465 DT G 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 55 -138.39 48.96 REMARK 500 ARG B 55 -130.70 47.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 3VDY A 1 113 UNP C0SPB6 SSB2_BACSU 1 113 DBREF 3VDY B 1 113 UNP C0SPB6 SSB2_BACSU 1 113 DBREF 3VDY C 5 39 PDB 3VDY 3VDY 5 39 DBREF 3VDY D 1 35 PDB 3VDY 3VDY 1 35 DBREF 3VDY E 12 46 PDB 3VDY 3VDY 12 46 DBREF 3VDY F 1 35 PDB 3VDY 3VDY 1 35 DBREF 3VDY G 14 48 PDB 3VDY 3VDY 14 48 SEQADV 3VDY HIS A -2 UNP C0SPB6 EXPRESSION TAG SEQADV 3VDY HIS A -1 UNP C0SPB6 EXPRESSION TAG SEQADV 3VDY HIS A 0 UNP C0SPB6 EXPRESSION TAG SEQADV 3VDY HIS B -2 UNP C0SPB6 EXPRESSION TAG SEQADV 3VDY HIS B -1 UNP C0SPB6 EXPRESSION TAG SEQADV 3VDY HIS B 0 UNP C0SPB6 EXPRESSION TAG SEQRES 1 A 116 HIS HIS HIS MET PHE ASN GLN VAL MET LEU VAL GLY ARG SEQRES 2 A 116 LEU THR LYS ASP PRO ASP LEU ARG TYR THR SER ALA GLY SEQRES 3 A 116 ALA ALA VAL ALA HIS VAL THR LEU ALA VAL ASN ARG SER SEQRES 4 A 116 PHE LYS ASN ALA SER GLY GLU ILE GLU ALA ASP TYR VAL SEQRES 5 A 116 ASN CYS THR LEU TRP ARG LYS THR ALA GLU ASN THR ALA SEQRES 6 A 116 LEU TYR CYS GLN LYS GLY SER LEU VAL GLY VAL SER GLY SEQRES 7 A 116 ARG ILE GLN THR ARG SER TYR GLU ASN GLU GLU GLY VAL SEQRES 8 A 116 ASN VAL TYR VAL THR GLU VAL LEU ALA ASP THR VAL ARG SEQRES 9 A 116 PHE MET ASP PRO LYS PRO ARG GLU LYS ALA ALA ASP SEQRES 1 B 116 HIS HIS HIS MET PHE ASN GLN VAL MET LEU VAL GLY ARG SEQRES 2 B 116 LEU THR LYS ASP PRO ASP LEU ARG TYR THR SER ALA GLY SEQRES 3 B 116 ALA ALA VAL ALA HIS VAL THR LEU ALA VAL ASN ARG SER SEQRES 4 B 116 PHE LYS ASN ALA SER GLY GLU ILE GLU ALA ASP TYR VAL SEQRES 5 B 116 ASN CYS THR LEU TRP ARG LYS THR ALA GLU ASN THR ALA SEQRES 6 B 116 LEU TYR CYS GLN LYS GLY SER LEU VAL GLY VAL SER GLY SEQRES 7 B 116 ARG ILE GLN THR ARG SER TYR GLU ASN GLU GLU GLY VAL SEQRES 8 B 116 ASN VAL TYR VAL THR GLU VAL LEU ALA ASP THR VAL ARG SEQRES 9 B 116 PHE MET ASP PRO LYS PRO ARG GLU LYS ALA ALA ASP SEQRES 1 C 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 C 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 C 35 DT DT DT DT DT DT DT DT DT SEQRES 1 D 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 D 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 D 35 DT DT DT DT DT DT DT DT DT SEQRES 1 E 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 E 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 E 35 DT DT DT DT DT DT DT DT DT SEQRES 1 F 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 F 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 F 35 DT DT DT DT DT DT DT DT DT SEQRES 1 G 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 G 35 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 3 G 35 DT DT DT DT DT DT DT DT DT HELIX 1 1 ARG A 55 CYS A 65 1 11 HELIX 2 2 ARG B 55 CYS B 65 1 11 SHEET 1 A 7 ASP A 16 TYR A 19 0 SHEET 2 A 7 ALA A 25 ASN A 34 -1 O VAL A 26 N ARG A 18 SHEET 3 A 7 ALA A 46 TRP A 54 -1 O VAL A 49 N LEU A 31 SHEET 4 A 7 VAL A 90 PHE A 102 1 O VAL A 95 N ASN A 50 SHEET 5 A 7 LEU A 70 TYR A 82 -1 N ARG A 76 O LEU A 96 SHEET 6 A 7 VAL A 5 LEU A 11 -1 N LEU A 7 O VAL A 73 SHEET 7 A 7 ALA A 25 ASN A 34 -1 O ALA A 32 N ARG A 10 SHEET 1 B 7 ASP B 16 TYR B 19 0 SHEET 2 B 7 ALA B 25 ASN B 34 -1 O VAL B 26 N ARG B 18 SHEET 3 B 7 ALA B 46 TRP B 54 -1 O CYS B 51 N VAL B 29 SHEET 4 B 7 VAL B 92 PHE B 102 1 O VAL B 95 N THR B 52 SHEET 5 B 7 LEU B 70 ARG B 80 -1 N GLN B 78 O GLU B 94 SHEET 6 B 7 VAL B 5 LEU B 11 -1 N GLY B 9 O VAL B 71 SHEET 7 B 7 ALA B 25 ASN B 34 -1 O ALA B 32 N ARG B 10 CRYST1 101.753 101.753 118.571 90.00 90.00 90.00 P 43 21 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009828 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008434 0.00000