HEADER IMMUNE SYSTEM 09-JAN-12 3VFG TITLE CRYSTAL STRUCTURE OF MONOCLONAL ANTIBODY 3F8 FAB FRAGMENT THAT BINDS TITLE 2 TO GD2 GANGLIOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3F8 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3F8 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN, ANTIBODY, GD2 GANGLIOSIDE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.AHMED,Y.GOLDGUR,N.-K.CHEUNG REVDAT 5 13-SEP-23 3VFG 1 SSBOND REVDAT 4 24-JUN-15 3VFG 1 TITLE REVDAT 3 26-JUN-13 3VFG 1 JRNL REVDAT 2 29-MAY-13 3VFG 1 JRNL REVDAT 1 06-FEB-13 3VFG 0 JRNL AUTH M.AHMED,Y.GOLDGUR,J.HU,H.F.GUO,N.K.CHEUNG JRNL TITL IN SILICO DRIVEN REDESIGN OF A CLINICALLY RELEVANT ANTIBODY JRNL TITL 2 FOR THE TREATMENT OF GD2 POSITIVE TUMORS. JRNL REF PLOS ONE V. 8 63359 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23696816 JRNL DOI 10.1371/JOURNAL.PONE.0063359 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 47192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3339 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3074 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4534 ; 2.094 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7086 ; 0.938 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 7.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;34.637 ;24.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;14.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3743 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3VFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2AJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HAMPTOM INDEX D7, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.01400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.01400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 129 REMARK 465 ASP H 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS L 194 O HOH L 481 1.77 REMARK 500 C TYR L 55 O HOH L 578 1.77 REMARK 500 NH1 ARG L 61 OD2 ASP L 82 1.91 REMARK 500 CB LYS H 117 O HOH H 524 1.93 REMARK 500 N SER L 56 O HOH L 578 1.97 REMARK 500 CB VAL L 206 O HOH L 572 1.99 REMARK 500 NE2 GLN H 105 O HOH H 473 2.00 REMARK 500 NZ LYS L 45 O HOH L 379 2.04 REMARK 500 O HOH L 503 O HOH L 548 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 319 O HOH L 574 2556 1.24 REMARK 500 O HOH H 538 O HOH H 538 2556 1.82 REMARK 500 O HOH L 456 O HOH L 582 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER L 76 CB SER L 76 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 82 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP L 91 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG H 95 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -127.59 48.98 REMARK 500 ALA L 51 -33.94 72.83 REMARK 500 TYR L 55 -124.77 -49.96 REMARK 500 ALA L 84 170.85 178.76 REMARK 500 GLN L 90 -105.65 -106.90 REMARK 500 SER H 15 -7.12 87.87 REMARK 500 MET H 64 -73.27 -16.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 1 ILE L 2 149.74 REMARK 500 GLY H 127 CYS H 128 139.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PSK RELATED DB: PDB REMARK 900 RELATED ID: 2AJU RELATED DB: PDB DBREF 3VFG L 1 214 PDB 3VFG 3VFG 1 214 DBREF 3VFG H 1 213 PDB 3VFG 3VFG 1 213 SEQRES 1 L 211 SER ILE VAL MET THR GLN THR PRO LYS PHE LEU LEU VAL SEQRES 2 L 211 SER ALA GLY ASP ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 L 211 GLN SER VAL SER ASN ASP VAL THR TRP TYR GLN GLN LYS SEQRES 4 L 211 ALA GLY GLN SER PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 L 211 ASN ARG TYR SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 L 211 GLY TYR GLY THR ALA PHE THR PHE THR ILE SER THR VAL SEQRES 7 L 211 GLN ALA GLU ASP LEU ALA VAL TYR PHE CYS GLN GLN ASP SEQRES 8 L 211 TYR SER SER PHE GLY GLY GLY THR LYS LEU GLU ILE LYS SEQRES 9 L 211 ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO PRO SEQRES 10 L 211 SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL VAL SEQRES 11 L 211 CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN VAL SEQRES 12 L 211 LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY VAL SEQRES 13 L 211 LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SER THR SEQRES 14 L 211 TYR SER MET SER SER THR LEU THR LEU THR LYS ASP GLU SEQRES 15 L 211 TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR HIS SEQRES 16 L 211 LYS THR SER THR SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 17 L 211 ASN GLU CYS SEQRES 1 H 219 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 219 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 219 PHE SER VAL THR ASN TYR GLY VAL HIS TRP VAL ARG GLN SEQRES 4 H 219 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 H 219 ALA GLY GLY ILE THR ASN TYR ASN SER ALA PHE MET SER SEQRES 6 H 219 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 219 PHE LEU LYS MET ASN SER LEU GLN ILE ASP ASP THR ALA SEQRES 8 H 219 MET TYR TYR CYS ALA SER ARG GLY GLY HIS TYR GLY TYR SEQRES 9 H 219 ALA LEU ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 H 219 SER SER ALA SER THR LYS GLY PRO SER VAL TYR PRO LEU SEQRES 11 H 219 VAL PRO GLY CYS SER ASP THR SER GLY SER SER VAL THR SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR VAL LYS TRP ASN TYR GLY ALA LEU SER SER GLY VAL SEQRES 14 H 219 ARG THR VAL SER SER VAL LEU GLN SER GLY PHE TYR SER SEQRES 15 H 219 LEU SER SER LEU VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 219 SER GLN THR VAL ILE CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 219 LYS THR GLU LEU ILE LYS ARG ILE GLU PRO ARG FORMUL 3 HOH *532(H2 O) HELIX 1 1 GLN L 79 LEU L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 ASN L 212 CYS L 214 5 3 HELIX 5 5 SER H 61 MET H 64 5 4 HELIX 6 6 ASN H 73 LYS H 75 5 3 HELIX 7 7 GLN H 83 THR H 87 5 5 HELIX 8 8 TYR H 156 ALA H 158 5 3 HELIX 9 9 PRO H 200 LYS H 203 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 A 4 ALA L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 A 4 PHE L 62 GLY L 66 -1 N SER L 65 O THR L 72 SHEET 1 B 6 PHE L 10 SER L 14 0 SHEET 2 B 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 89 -1 N ALA L 84 O LEU L 104 SHEET 4 B 6 THR L 34 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 C 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 C 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 D 4 SER L 153 ARG L 155 0 SHEET 2 D 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 D 4 SER L 191 HIS L 198 -1 O THR L 197 N ASN L 145 SHEET 4 D 4 SER L 201 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 E 4 GLN H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 O THR H 23 N LYS H 5 SHEET 3 E 4 GLN H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 E 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 F 6 LEU H 11 VAL H 12 0 SHEET 2 F 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 F 6 ALA H 88 SER H 94 -1 N TYR H 90 O THR H 107 SHEET 4 F 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 F 6 GLU H 46 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 F 6 THR H 57 TYR H 59 -1 O ASN H 58 N VAL H 50 SHEET 1 G 4 LEU H 11 VAL H 12 0 SHEET 2 G 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 4 ALA H 88 SER H 94 -1 N TYR H 90 O THR H 107 SHEET 4 G 4 TYR H 102 TRP H 103 -1 O TYR H 102 N SER H 94 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 H 4 PHE H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 H 4 VAL H 163 THR H 165 -1 N ARG H 164 O LEU H 180 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 I 4 PHE H 174 PRO H 184 -1 O LEU H 177 N VAL H 142 SHEET 4 I 4 VAL H 169 GLN H 171 -1 N GLN H 171 O PHE H 174 SHEET 1 J 3 THR H 151 TRP H 154 0 SHEET 2 J 3 ILE H 194 HIS H 199 -1 O ASN H 196 N LYS H 153 SHEET 3 J 3 THR H 204 ARG H 209 -1 O LEU H 206 N VAL H 197 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.02 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.07 SSBOND 3 CYS L 214 CYS H 128 1555 1555 2.06 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.14 SSBOND 5 CYS H 140 CYS H 195 1555 1555 2.06 CISPEP 1 THR L 7 PRO L 8 0 -6.93 CISPEP 2 TYR L 140 PRO L 141 0 6.17 CISPEP 3 PHE H 146 PRO H 147 0 -13.28 CISPEP 4 GLU H 148 PRO H 149 0 2.05 CISPEP 5 TRP H 188 PRO H 189 0 9.30 CRYST1 116.028 64.310 57.241 90.00 93.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008619 0.000000 0.000550 0.00000 SCALE2 0.000000 0.015550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017506 0.00000