HEADER SIGNALING PROTEIN 26-AUG-11 3VHL TITLE CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK8 IN COMPLEX WITH CDC42 TITLE 2 (T17N MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEDICATOR OF CYTOKINESIS PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DHR-2 DOMAIN (UNP RESIDUES 1787-2067); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELL DIVISION CONTROL PROTEIN 42 HOMOLOG; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CDC42, G25K GTP-BINDING PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DOCK8; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHSIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PX101019-11; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CDC42; SOURCE 14 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHSIS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PX080214-12 KEYWDS SIGNAL TRANSDUCTION, GUANINE NUCLEOTIDE EXCHANG FACTOR, GTPASE, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.HANAWA-SUETSUGU,M.KUKIMOTO-NIINO,T.NISHIZAK,T.TERADA,M.SHIROUZU, AUTHOR 2 Y.FUKUI,S.YOKOYAMA REVDAT 2 08-NOV-23 3VHL 1 REMARK SEQADV REVDAT 1 20-JUN-12 3VHL 0 JRNL AUTH Y.HARADA,Y.TANAKA,M.TERASAWA,M.PIECZYK,K.HABIRO,T.KATAKAI, JRNL AUTH 2 K.HANAWA-SUETSUGU,M.KUKIMOTO-NIINO,T.NISHIZAKI,M.SHIROUZU, JRNL AUTH 3 X.DUAN,T.URUNO,A.NISHIKIMI,F.SANEMATSU,S.YOKOYAMA,J.V.STEIN, JRNL AUTH 4 T.KINASHI,Y.FUKUI JRNL TITL DOCK8 IS A CDC42 ACTIVATOR CRITICAL FOR INTERSTITIAL JRNL TITL 2 DENDRITIC CELL MIGRATION DURING IMMUNE RESPONSES. JRNL REF BLOOD V. 119 4451 2012 JRNL REFN ISSN 0006-4971 JRNL PMID 22461490 JRNL DOI 10.1182/BLOOD-2012-01-407098 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 26517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6819 - 5.0173 0.99 1923 147 0.1875 0.2298 REMARK 3 2 5.0173 - 3.9854 0.99 1862 142 0.1408 0.1765 REMARK 3 3 3.9854 - 3.4825 0.98 1853 143 0.1615 0.1991 REMARK 3 4 3.4825 - 3.1645 1.00 1880 145 0.1741 0.2216 REMARK 3 5 3.1645 - 2.9379 0.96 1789 140 0.1982 0.2034 REMARK 3 6 2.9379 - 2.7648 0.91 1694 131 0.2093 0.3286 REMARK 3 7 2.7648 - 2.6264 0.90 1697 135 0.2116 0.2984 REMARK 3 8 2.6264 - 2.5122 0.91 1712 131 0.1987 0.2583 REMARK 3 9 2.5122 - 2.4155 0.92 1732 134 0.1863 0.2745 REMARK 3 10 2.4155 - 2.3322 0.90 1644 128 0.1922 0.2712 REMARK 3 11 2.3322 - 2.2593 0.91 1723 134 0.1829 0.2799 REMARK 3 12 2.2593 - 2.1947 0.94 1753 134 0.1787 0.2615 REMARK 3 13 2.1947 - 2.1370 0.93 1734 137 0.1898 0.2738 REMARK 3 14 2.1370 - 2.0848 0.87 1616 124 0.1916 0.2825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 47.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.30480 REMARK 3 B22 (A**2) : 0.26830 REMARK 3 B33 (A**2) : 3.03650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.30910 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3665 REMARK 3 ANGLE : 1.275 4956 REMARK 3 CHIRALITY : 0.100 547 REMARK 3 PLANARITY : 0.007 639 REMARK 3 DIHEDRAL : 15.217 1396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1792:1890) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8503 -5.9088 -6.5282 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.1292 REMARK 3 T33: 0.1486 T12: -0.0359 REMARK 3 T13: -0.0109 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.7318 L22: 4.7858 REMARK 3 L33: 2.3279 L12: -0.4729 REMARK 3 L13: -0.4728 L23: 0.2352 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0484 S13: 0.0565 REMARK 3 S21: -0.1830 S22: 0.0251 S23: -0.1409 REMARK 3 S31: -0.0954 S32: -0.1104 S33: -0.0614 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1891:1980) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3947 8.6237 2.9862 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1688 REMARK 3 T33: 0.2396 T12: 0.0125 REMARK 3 T13: -0.0079 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.0328 L22: 0.8511 REMARK 3 L33: 0.4403 L12: -0.0803 REMARK 3 L13: -0.2057 L23: 0.2437 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.0286 S13: 0.0513 REMARK 3 S21: -0.0718 S22: 0.1143 S23: -0.0140 REMARK 3 S31: -0.0341 S32: -0.0386 S33: -0.0675 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1981:2062) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0201 20.3687 20.6824 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.2248 REMARK 3 T33: 0.2024 T12: 0.0943 REMARK 3 T13: -0.0652 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 4.2233 L22: 3.0637 REMARK 3 L33: 3.8315 L12: 0.7413 REMARK 3 L13: -2.0243 L23: -1.5394 REMARK 3 S TENSOR REMARK 3 S11: 0.1569 S12: -0.3810 S13: 0.2816 REMARK 3 S21: 0.4036 S22: -0.0476 S23: -0.1335 REMARK 3 S31: -0.5247 S32: -0.0412 S33: -0.1640 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4624 -2.0574 20.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.3422 REMARK 3 T33: 0.2355 T12: -0.0447 REMARK 3 T13: 0.0039 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 9.1222 L22: 4.2778 REMARK 3 L33: 7.5881 L12: -6.1967 REMARK 3 L13: 3.9183 L23: -2.8511 REMARK 3 S TENSOR REMARK 3 S11: 0.5998 S12: 0.7784 S13: 0.0929 REMARK 3 S21: -0.3179 S22: -0.4237 S23: 0.3808 REMARK 3 S31: 0.1239 S32: -0.4716 S33: -0.1912 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 11:57) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4265 -1.1843 12.7408 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.2562 REMARK 3 T33: 0.1940 T12: 0.0043 REMARK 3 T13: 0.0298 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.5744 L22: 2.7423 REMARK 3 L33: 2.3348 L12: -0.4657 REMARK 3 L13: 0.0032 L23: -0.4134 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: -0.0167 S13: 0.0775 REMARK 3 S21: -0.1225 S22: -0.1341 S23: -0.0453 REMARK 3 S31: 0.2532 S32: -0.1475 S33: 0.0782 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 58:67) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0487 1.6891 32.9837 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.4653 REMARK 3 T33: 0.3468 T12: -0.0239 REMARK 3 T13: -0.0614 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 2.4790 L22: 8.6301 REMARK 3 L33: 2.5588 L12: 0.4801 REMARK 3 L13: 2.3371 L23: 0.4500 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.2644 S13: 0.2541 REMARK 3 S21: 0.6003 S22: -0.0110 S23: -0.8445 REMARK 3 S31: -0.5089 S32: 1.4899 S33: 0.2279 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 68:164) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2816 -14.3245 24.0574 REMARK 3 T TENSOR REMARK 3 T11: 0.2599 T22: 0.2262 REMARK 3 T33: 0.1881 T12: -0.0719 REMARK 3 T13: 0.0031 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.9211 L22: 1.7710 REMARK 3 L33: 2.3409 L12: -0.5819 REMARK 3 L13: -0.1479 L23: 0.0722 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.0052 S13: -0.2436 REMARK 3 S21: 0.0936 S22: 0.1044 S23: 0.0050 REMARK 3 S31: 0.3753 S32: -0.2535 S33: 0.0073 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 165:178) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6433 -11.0670 14.9478 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.2293 REMARK 3 T33: 0.2197 T12: -0.0818 REMARK 3 T13: -0.0644 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 5.9105 L22: 5.3599 REMARK 3 L33: 6.1082 L12: -4.7762 REMARK 3 L13: -1.0099 L23: 2.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.1356 S12: 0.1933 S13: -0.5764 REMARK 3 S21: -0.2410 S22: -0.1215 S23: 0.2212 REMARK 3 S31: 0.3288 S32: -0.5042 S33: -0.0057 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000095053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.085 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 FOR SHELL : 4.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2WM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM PHOSPHATE, 20% PEG REMARK 280 3350, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.09250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.63950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.09250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.63950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1780 REMARK 465 SER A 1781 REMARK 465 SER A 1782 REMARK 465 GLY A 1783 REMARK 465 SER A 1784 REMARK 465 SER A 1785 REMARK 465 GLY A 1786 REMARK 465 ASP A 1787 REMARK 465 HIS A 1788 REMARK 465 LYS A 1789 REMARK 465 ARG A 1790 REMARK 465 MET A 1791 REMARK 465 ASP A 1880 REMARK 465 ARG A 1881 REMARK 465 VAL A 1882 REMARK 465 THR A 1883 REMARK 465 TYR A 1884 REMARK 465 PHE A 1885 REMARK 465 GLU A 1886 REMARK 465 LYS A 1887 REMARK 465 ASN A 1888 REMARK 465 LYS A 2065 REMARK 465 ILE A 2066 REMARK 465 PRO A 2067 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 179 REMARK 465 PRO B 180 REMARK 465 GLU B 181 REMARK 465 PRO B 182 REMARK 465 LYS B 183 REMARK 465 LYS B 184 REMARK 465 SER B 185 REMARK 465 ARG B 186 REMARK 465 ARG B 187 REMARK 465 SER B 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1810 -0.79 74.46 REMARK 500 ALA A1819 -123.79 43.59 REMARK 500 VAL A1986 -63.41 -105.10 REMARK 500 GLN B 2 -167.80 -100.38 REMARK 500 ASN B 39 -179.65 63.76 REMARK 500 LYS B 96 -63.32 -121.60 REMARK 500 GLN B 162 -5.31 80.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 189 DBREF 3VHL A 1787 2067 UNP Q8C147 DOCK8_MOUSE 1787 2067 DBREF 3VHL B 1 188 UNP P60953 CDC42_HUMAN 1 188 SEQADV 3VHL GLY A 1780 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL SER A 1781 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL SER A 1782 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL GLY A 1783 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL SER A 1784 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL SER A 1785 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL GLY A 1786 UNP Q8C147 EXPRESSION TAG SEQADV 3VHL GLY B -6 UNP P60953 EXPRESSION TAG SEQADV 3VHL SER B -5 UNP P60953 EXPRESSION TAG SEQADV 3VHL SER B -4 UNP P60953 EXPRESSION TAG SEQADV 3VHL GLY B -3 UNP P60953 EXPRESSION TAG SEQADV 3VHL SER B -2 UNP P60953 EXPRESSION TAG SEQADV 3VHL SER B -1 UNP P60953 EXPRESSION TAG SEQADV 3VHL GLY B 0 UNP P60953 EXPRESSION TAG SEQADV 3VHL ASN B 17 UNP P60953 THR 17 ENGINEERED MUTATION SEQADV 3VHL SER B 188 UNP P60953 CYS 188 ENGINEERED MUTATION SEQRES 1 A 288 GLY SER SER GLY SER SER GLY ASP HIS LYS ARG MET PHE SEQRES 2 A 288 GLY THR TYR PHE ARG VAL GLY PHE TYR GLY SER ARG PHE SEQRES 3 A 288 GLY ASP LEU ASP GLU GLN GLU PHE VAL TYR LYS GLU PRO SEQRES 4 A 288 ALA ILE THR LYS LEU PRO GLU ILE SER HIS ARG LEU GLU SEQRES 5 A 288 GLY PHE TYR GLY GLN CYS PHE GLY ALA GLU PHE VAL GLU SEQRES 6 A 288 VAL ILE LYS ASP SER THR PRO VAL ASP LYS THR LYS LEU SEQRES 7 A 288 ASP PRO ASN LYS ALA TYR ILE GLN ILE THR PHE VAL GLU SEQRES 8 A 288 PRO TYR PHE ASP GLU TYR GLU MET LYS ASP ARG VAL THR SEQRES 9 A 288 TYR PHE GLU LYS ASN PHE ASN LEU ARG ARG PHE MET TYR SEQRES 10 A 288 THR THR PRO PHE THR LEU GLU GLY ARG PRO ARG GLY GLU SEQRES 11 A 288 LEU HIS GLU GLN HIS ARG ARG ASN THR VAL LEU THR THR SEQRES 12 A 288 MET HIS ALA PHE PRO TYR ILE LYS THR ARG ILE ARG VAL SEQRES 13 A 288 SER GLN LYS GLU GLU PHE VAL LEU THR PRO ILE GLU VAL SEQRES 14 A 288 ALA ILE GLU ASP MET LYS LYS LYS THR LEU GLN LEU ALA SEQRES 15 A 288 VAL ALA THR HIS GLN GLU PRO PRO ASP ALA LYS MET LEU SEQRES 16 A 288 GLN MET VAL LEU GLN GLY SER VAL GLY ALA THR VAL ASN SEQRES 17 A 288 GLN GLY PRO LEU GLU VAL ALA GLN VAL PHE LEU ALA GLU SEQRES 18 A 288 ILE PRO ALA ASP PRO LYS LEU TYR ARG HIS HIS ASN LYS SEQRES 19 A 288 LEU ARG LEU CYS PHE LYS GLU PHE ILE MET ARG CYS GLY SEQRES 20 A 288 GLU ALA VAL GLU LYS ASN ARG ARG LEU ILE THR ALA GLU SEQRES 21 A 288 GLN ARG GLU TYR GLN GLN GLU LEU LYS LYS ASN TYR ASN SEQRES 22 A 288 LYS LEU ARG ASP SER LEU ARG PRO MET ILE GLU ARG LYS SEQRES 23 A 288 ILE PRO SEQRES 1 B 195 GLY SER SER GLY SER SER GLY MET GLN THR ILE LYS CYS SEQRES 2 B 195 VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS ASN CYS LEU SEQRES 3 B 195 LEU ILE SER TYR THR THR ASN LYS PHE PRO SER GLU TYR SEQRES 4 B 195 VAL PRO THR VAL PHE ASP ASN TYR ALA VAL THR VAL MET SEQRES 5 B 195 ILE GLY GLY GLU PRO TYR THR LEU GLY LEU PHE ASP THR SEQRES 6 B 195 ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER SEQRES 7 B 195 TYR PRO GLN THR ASP VAL PHE LEU VAL CYS PHE SER VAL SEQRES 8 B 195 VAL SER PRO SER SER PHE GLU ASN VAL LYS GLU LYS TRP SEQRES 9 B 195 VAL PRO GLU ILE THR HIS HIS CYS PRO LYS THR PRO PHE SEQRES 10 B 195 LEU LEU VAL GLY THR GLN ILE ASP LEU ARG ASP ASP PRO SEQRES 11 B 195 SER THR ILE GLU LYS LEU ALA LYS ASN LYS GLN LYS PRO SEQRES 12 B 195 ILE THR PRO GLU THR ALA GLU LYS LEU ALA ARG ASP LEU SEQRES 13 B 195 LYS ALA VAL LYS TYR VAL GLU CYS SER ALA LEU THR GLN SEQRES 14 B 195 LYS GLY LEU LYS ASN VAL PHE ASP GLU ALA ILE LEU ALA SEQRES 15 B 195 ALA LEU GLU PRO PRO GLU PRO LYS LYS SER ARG ARG SER HET PO4 A 2 5 HET PO4 B 189 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *194(H2 O) HELIX 1 1 GLY A 1802 ASP A 1809 5 8 HELIX 2 2 LYS A 1822 GLY A 1839 1 18 HELIX 3 3 ASP A 1853 LEU A 1857 5 5 HELIX 4 4 ASP A 1874 LYS A 1879 1 6 HELIX 5 5 GLU A 1909 GLN A 1913 5 5 HELIX 6 6 THR A 1944 GLN A 1966 1 23 HELIX 7 7 ASP A 1970 GLY A 1983 1 14 HELIX 8 8 GLY A 1989 LEU A 1998 1 10 HELIX 9 9 ASP A 2004 ILE A 2036 1 33 HELIX 10 10 THR A 2037 GLU A 2039 5 3 HELIX 11 11 GLN A 2040 GLU A 2063 1 24 HELIX 12 12 GLY B 15 ASN B 26 1 12 HELIX 13 13 PHE B 28 TYR B 32 5 5 HELIX 14 14 GLN B 61 ASP B 65 5 5 HELIX 15 15 LEU B 67 TYR B 72 5 6 HELIX 16 16 SER B 86 LYS B 96 1 11 HELIX 17 17 LYS B 96 CYS B 105 1 10 HELIX 18 18 GLN B 116 ASP B 121 1 6 HELIX 19 19 ASP B 122 ASN B 132 1 11 HELIX 20 20 THR B 138 LYS B 150 1 13 HELIX 21 21 GLY B 164 LEU B 177 1 14 SHEET 1 A 8 VAL A1843 ILE A1846 0 SHEET 2 A 8 ALA A1862 PRO A1871 1 O ILE A1864 N ILE A1846 SHEET 3 A 8 LEU A1891 PHE A1900 -1 O MET A1895 N GLU A1870 SHEET 4 A 8 HIS A1914 PHE A1926 -1 O LEU A1920 N PHE A1894 SHEET 5 A 8 ARG A1932 LEU A1943 -1 O ARG A1934 N MET A1923 SHEET 6 A 8 GLU A1812 GLU A1817 -1 N GLU A1812 O VAL A1935 SHEET 7 A 8 THR A1794 TYR A1801 -1 N THR A1794 O GLU A1817 SHEET 8 A 8 ALA A1862 PRO A1871 -1 O THR A1867 N ARG A1797 SHEET 1 B 6 TYR B 40 ILE B 46 0 SHEET 2 B 6 GLU B 49 ASP B 57 -1 O LEU B 55 N TYR B 40 SHEET 3 B 6 ILE B 4 GLY B 10 1 N VAL B 8 O PHE B 56 SHEET 4 B 6 VAL B 77 SER B 83 1 O CYS B 81 N VAL B 9 SHEET 5 B 6 PHE B 110 THR B 115 1 O LEU B 111 N VAL B 80 SHEET 6 B 6 LYS B 153 GLU B 156 1 O VAL B 155 N LEU B 112 CISPEP 1 PHE A 1926 PRO A 1927 0 -2.39 CISPEP 2 GLU A 1967 PRO A 1968 0 -2.82 SITE 1 AC1 5 HOH A 89 LYS A1816 PRO A1927 ARG A2015 SITE 2 AC1 5 LYS A2019 SITE 1 AC2 9 ASP B 11 GLY B 12 ALA B 13 VAL B 14 SITE 2 AC2 9 GLY B 15 LYS B 16 ASN B 17 HOH B 222 SITE 3 AC2 9 HOH B 224 CRYST1 104.185 73.279 65.031 90.00 104.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009598 0.000000 0.002539 0.00000 SCALE2 0.000000 0.013646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015906 0.00000