HEADER LIGASE 17-JAN-12 3VNN TITLE CRYSTAL STRUCTURE OF A SUB-DOMAIN OF THE NUCLEOTIDYLTRANSFERASE TITLE 2 (ADENYLATION) DOMAIN OF HUMAN DNA LIGASE IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A SUB-DOMAIN OF THE NUCLEOTIDYLTRANSFERASE (ADENYLATION) COMPND 5 DOMAIN, UNP RESIDUES 268-405; COMPND 6 SYNONYM: DNA LIGASE IV, POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 4; COMPND 7 EC: 6.5.1.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIG4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHAT5 KEYWDS DNA LIGASE, NON-HOMOLOGOUS END JOINING, DNA REPAIR, XRCC4, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OCHI,Q.WU,D.Y.CHIRGADZE,J.G.GROSSMANN,V.M.BOLANOS-GARCIA, AUTHOR 2 T.L.BLUNDELL REVDAT 3 20-MAR-24 3VNN 1 REMARK REVDAT 2 24-JUL-13 3VNN 1 JRNL REVDAT 1 20-JUN-12 3VNN 0 JRNL AUTH T.OCHI,Q.WU,D.Y.CHIRGADZE,J.G.GROSSMANN,V.M.BOLANOS-GARCIA, JRNL AUTH 2 T.L.BLUNDELL JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE OF DOMAIN FLEXIBILITY IN JRNL TITL 2 HUMAN DNA LIGASE IV JRNL REF STRUCTURE V. 20 1212 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22658747 JRNL DOI 10.1016/J.STR.2012.04.012 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 3811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6413 - 4.1842 0.98 1203 134 0.2742 0.2920 REMARK 3 2 4.1842 - 3.3224 1.00 1127 126 0.2581 0.2978 REMARK 3 3 3.3224 - 2.9028 1.00 1100 121 0.3042 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 95.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.89710 REMARK 3 B22 (A**2) : 8.89710 REMARK 3 B33 (A**2) : -17.79420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 970 REMARK 3 ANGLE : 1.971 1319 REMARK 3 CHIRALITY : 0.156 147 REMARK 3 PLANARITY : 0.011 173 REMARK 3 DIHEDRAL : 18.975 331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.1544 12.1520 62.2802 REMARK 3 T TENSOR REMARK 3 T11: 1.1422 T22: 0.6554 REMARK 3 T33: 0.6698 T12: -0.5319 REMARK 3 T13: 0.4325 T23: -0.1712 REMARK 3 L TENSOR REMARK 3 L11: 3.3707 L22: 1.3123 REMARK 3 L33: 2.7432 L12: -0.9543 REMARK 3 L13: 1.4246 L23: 0.7508 REMARK 3 S TENSOR REMARK 3 S11: 0.3848 S12: 0.0965 S13: 0.1399 REMARK 3 S21: -0.0758 S22: 0.1461 S23: 0.0040 REMARK 3 S31: -1.1068 S32: 0.6403 S33: -0.2819 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000095271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : 0.54400 REMARK 200 FOR SHELL : 5.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% PEG 6000, 100MM MES, 0.01MG/ML REMARK 280 PAPAIN, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.69650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.34825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.04475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.69650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 148.04475 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.34825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 309 REMARK 465 SER A 310 REMARK 465 GLY A 346 REMARK 465 THR A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 ASP A 350 REMARK 465 ILE A 351 REMARK 465 LYS A 352 REMARK 465 ARG A 353 REMARK 465 MET A 354 REMARK 465 VAL A 355 REMARK 465 GLU A 356 REMARK 465 ASP A 357 REMARK 465 SER A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ASP A 284 CG OD1 OD2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 SER A 305 OG REMARK 470 ILE A 315 CG1 CG2 CD1 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 MET A 343 CG SD CE REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 LEU A 360 CG CD1 CD2 REMARK 470 GLN A 361 CG CD OE1 NE2 REMARK 470 ASN A 374 CG OD1 ND2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LEU A 377 CG CD1 CD2 REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 GLN A 404 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG1 VAL A 369 CD1 LEU A 389 1.55 REMARK 500 O GLU A 380 NH1 ARG A 385 2.09 REMARK 500 O ASP A 322 ND2 ASN A 373 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 288 CZ TYR A 288 CE2 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 393 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO A 397 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 286 -7.24 89.52 REMARK 500 TYR A 296 155.12 177.10 REMARK 500 PHE A 302 -74.23 -99.61 REMARK 500 ALA A 321 -110.02 44.03 REMARK 500 GLN A 324 -57.43 -122.79 REMARK 500 ASN A 373 68.66 36.61 REMARK 500 ASN A 374 -17.44 66.76 REMARK 500 PHE A 393 -65.51 -136.77 REMARK 500 THR A 394 125.85 81.34 REMARK 500 ILE A 400 73.26 50.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 317 ALA A 318 141.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X9N RELATED DB: PDB REMARK 900 A HUMAN HOMOLOG REMARK 900 RELATED ID: 3L2P RELATED DB: PDB REMARK 900 A HUMAN HOMOLOG REMARK 900 RELATED ID: 1IK9 RELATED DB: PDB REMARK 900 A DIFFERENT POLYPEPTIDE FROM THE SAME PROTEIN REMARK 900 RELATED ID: 3II6 RELATED DB: PDB REMARK 900 THE BRCT DOMAINS OF THE SAME PROTEIN REMARK 900 RELATED ID: 2E2W RELATED DB: PDB REMARK 900 THE FIRST BRCT DOMAIN OF THE SAME PROTEIN DBREF 3VNN A 268 406 UNP P49917 DNLI4_HUMAN 268 406 SEQRES 1 A 139 PHE TYR ILE GLU THR LYS LEU ASP GLY GLU ARG MET GLN SEQRES 2 A 139 MET HIS LYS ASP GLY ASP VAL TYR LYS TYR PHE SER ARG SEQRES 3 A 139 ASN GLY TYR ASN TYR THR ASP GLN PHE GLY ALA SER PRO SEQRES 4 A 139 THR GLU GLY SER LEU THR PRO PHE ILE HIS ASN ALA PHE SEQRES 5 A 139 LYS ALA ASP ILE GLN ILE CYS ILE LEU ASP GLY GLU MET SEQRES 6 A 139 MET ALA TYR ASN PRO ASN THR GLN THR PHE MET GLN LYS SEQRES 7 A 139 GLY THR LYS PHE ASP ILE LYS ARG MET VAL GLU ASP SER SEQRES 8 A 139 ASP LEU GLN THR CYS TYR CYS VAL PHE ASP VAL LEU MET SEQRES 9 A 139 VAL ASN ASN LYS LYS LEU GLY HIS GLU THR LEU ARG LYS SEQRES 10 A 139 ARG TYR GLU ILE LEU SER SER ILE PHE THR PRO ILE PRO SEQRES 11 A 139 GLY ARG ILE GLU ILE VAL GLN LYS THR FORMUL 2 HOH *3(H2 O) HELIX 1 1 PRO A 313 ASN A 317 5 5 HELIX 2 2 THR A 381 PHE A 393 1 13 SHEET 1 A 4 VAL A 287 PHE A 291 0 SHEET 2 A 4 GLU A 277 ASP A 284 -1 N ASP A 284 O VAL A 287 SHEET 3 A 4 ILE A 325 ASN A 336 -1 O MET A 332 N GLU A 277 SHEET 4 A 4 THR A 341 PHE A 342 -1 O THR A 341 N ASN A 336 SHEET 1 B 5 VAL A 287 PHE A 291 0 SHEET 2 B 5 GLU A 277 ASP A 284 -1 N ASP A 284 O VAL A 287 SHEET 3 B 5 ILE A 325 ASN A 336 -1 O MET A 332 N GLU A 277 SHEET 4 B 5 GLN A 361 VAL A 372 -1 O MET A 371 N ILE A 327 SHEET 5 B 5 LYS A 375 LYS A 376 -1 O LYS A 375 N VAL A 372 CRYST1 39.086 39.086 197.393 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005066 0.00000